LOCUS       DANLXB010000001        42085 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLXB010000001 DANLXB010000000
VERSION     DANLXB010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42085
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            190..1548
                     /locus_tag="PXD41_000001"
     CDS             190..1548
                     /locus_tag="PXD41_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL6287578.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            1551..2786
                     /locus_tag="PXD41_000002"
     CDS             1551..2786
                     /locus_tag="PXD41_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL6287579.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            2779..3552
                     /locus_tag="PXD41_000003"
     CDS             2779..3552
                     /locus_tag="PXD41_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL6287580.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            3552..4178
                     /locus_tag="PXD41_000004"
     CDS             3552..4178
                     /locus_tag="PXD41_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL6287581.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            4180..4776
                     /gene="nqrE"
                     /locus_tag="PXD41_000005"
     CDS             4180..4776
                     /gene="nqrE"
                     /locus_tag="PXD41_000005"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL6287582.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            4787..6016
                     /gene="nqrF"
                     /locus_tag="PXD41_000006"
     CDS             4787..6016
                     /gene="nqrF"
                     /locus_tag="PXD41_000006"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL6287583.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            6128..6562
                     /locus_tag="PXD41_000007"
     CDS             6128..6562
                     /locus_tag="PXD41_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6287584.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            6555..6848
                     /locus_tag="PXD41_000008"
     CDS             6555..6848
                     /locus_tag="PXD41_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6287585.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            6897..7931
                     /locus_tag="PXD41_000009"
     CDS             6897..7931
                     /locus_tag="PXD41_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL6287586.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            7944..8189
                     /gene="nqrM"
                     /locus_tag="PXD41_000010"
     CDS             7944..8189
                     /gene="nqrM"
                     /locus_tag="PXD41_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL6287587.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            8191..8607
                     /locus_tag="PXD41_000011"
     CDS             8191..8607
                     /locus_tag="PXD41_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6287588.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            8589..8900
                     /locus_tag="PXD41_000012"
     CDS             8589..8900
                     /locus_tag="PXD41_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6287589.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            9011..10174
                     /gene="mnmA"
                     /locus_tag="PXD41_000013"
     CDS             9011..10174
                     /gene="mnmA"
                     /locus_tag="PXD41_000013"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL6287590.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            10291..11670
                     /gene="argH"
                     /locus_tag="PXD41_000014"
     CDS             10291..11670
                     /gene="argH"
                     /locus_tag="PXD41_000014"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL6287591.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            11838..12836
                     /locus_tag="PXD41_000015"
     CDS             11838..12836
                     /locus_tag="PXD41_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL6287592.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            12937..14049
                     /gene="ispG"
                     /locus_tag="PXD41_000016"
                     /gene_synonym="gcpE"
     CDS             12937..14049
                     /gene="ispG"
                     /locus_tag="PXD41_000016"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL6287593.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            14055..15326
                     /gene="hisS"
                     /locus_tag="PXD41_000017"
     CDS             14055..15326
                     /gene="hisS"
                     /locus_tag="PXD41_000017"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL6287594.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            15336..15956
                     /locus_tag="PXD41_000018"
     CDS             15336..15956
                     /locus_tag="PXD41_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL6287595.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(16019..17122)
                     /gene="dnaN"
                     /locus_tag="PXD41_000019"
     CDS             complement(16019..17122)
                     /gene="dnaN"
                     /locus_tag="PXD41_000019"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL6287596.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17141..18490)
                     /gene="dnaA"
                     /locus_tag="PXD41_000020"
     CDS             complement(17141..18490)
                     /gene="dnaA"
                     /locus_tag="PXD41_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL6287597.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(18677..20524)
                     /locus_tag="PXD41_000021"
     CDS             complement(18677..20524)
                     /locus_tag="PXD41_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6287598.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(20593..21102)
                     /gene="luxS"
                     /locus_tag="PXD41_000022"
     CDS             complement(20593..21102)
                     /gene="luxS"
                     /locus_tag="PXD41_000022"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL6287599.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            complement(21120..23786)
                     /locus_tag="PXD41_000023"
     CDS             complement(21120..23786)
                     /locus_tag="PXD41_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL6287600.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(23869..24309)
                     /gene="fur"
                     /locus_tag="PXD41_000024"
     CDS             complement(23869..24309)
                     /gene="fur"
                     /locus_tag="PXD41_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL6287601.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(24345..24869)
                     /gene="fldA"
                     /locus_tag="PXD41_000025"
     CDS             complement(24345..24869)
                     /gene="fldA"
                     /locus_tag="PXD41_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL6287602.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(24875..25150)
                     /gene="ybfE"
                     /locus_tag="PXD41_000026"
     CDS             complement(24875..25150)
                     /gene="ybfE"
                     /locus_tag="PXD41_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL6287603.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            25391..26377
                     /locus_tag="PXD41_000027"
     CDS             25391..26377
                     /locus_tag="PXD41_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6287604.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            26474..27769
                     /locus_tag="PXD41_000028"
     CDS             26474..27769
                     /locus_tag="PXD41_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6287605.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            27889..28257
                     /locus_tag="PXD41_000029"
     CDS             27889..28257
                     /locus_tag="PXD41_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL6287606.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            28257..29450
                     /locus_tag="PXD41_000030"
     CDS             28257..29450
                     /locus_tag="PXD41_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6287607.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(29521..29739)
                     /gene="infA"
                     /locus_tag="PXD41_000031"
     CDS             complement(29521..29739)
                     /gene="infA"
                     /locus_tag="PXD41_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL6287608.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(29849..30508)
                     /locus_tag="PXD41_000032"
     CDS             complement(29849..30508)
                     /locus_tag="PXD41_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL6287609.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            30594..31457
                     /gene="serB"
                     /locus_tag="PXD41_000033"
     CDS             30594..31457
                     /gene="serB"
                     /locus_tag="PXD41_000033"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL6287610.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            31473..31964
                     /locus_tag="PXD41_000034"
     CDS             31473..31964
                     /locus_tag="PXD41_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL6287611.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            32049..32225
                     /locus_tag="PXD41_000035"
     CDS             32049..32225
                     /locus_tag="PXD41_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL6287612.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(32273..32569)
                     /locus_tag="PXD41_000036"
     CDS             complement(32273..32569)
                     /locus_tag="PXD41_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287613.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(32646..33614)
                     /gene="mdh"
                     /locus_tag="PXD41_000037"
     CDS             complement(32646..33614)
                     /gene="mdh"
                     /locus_tag="PXD41_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL6287614.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            33810..34271
                     /gene="argR"
                     /locus_tag="PXD41_000038"
     CDS             33810..34271
                     /gene="argR"
                     /locus_tag="PXD41_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL6287615.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            34321..35217
                     /locus_tag="PXD41_000039"
     CDS             34321..35217
                     /locus_tag="PXD41_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL6287616.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            35262..37460
                     /gene="uvrD"
                     /locus_tag="PXD41_000040"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             35262..37460
                     /gene="uvrD"
                     /locus_tag="PXD41_000040"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL6287617.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
     gene            complement(37607..37681)
                     /locus_tag="PXD41_000041"
     tRNA            complement(37607..37681)
                     /locus_tag="PXD41_000041"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37647..37649),aa:Gln,seq:ttg)
     gene            complement(37736..37810)
                     /locus_tag="PXD41_000042"
     tRNA            complement(37736..37810)
                     /locus_tag="PXD41_000042"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37776..37778),aa:Gln,seq:ttg)
     gene            complement(37836..37920)
                     /locus_tag="PXD41_000043"
     tRNA            complement(37836..37920)
                     /locus_tag="PXD41_000043"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37884..37886),aa:Leu,seq:tag)
     gene            complement(37923..37999)
                     /locus_tag="PXD41_000044"
     tRNA            complement(37923..37999)
                     /locus_tag="PXD41_000044"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37963..37965),aa:Met,seq:cat)
     gene            complement(38166..38990)
                     /gene="aroE"
                     /locus_tag="PXD41_000045"
     CDS             complement(38166..38990)
                     /gene="aroE"
                     /locus_tag="PXD41_000045"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL6287618.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(38997..39551)
                     /locus_tag="PXD41_000046"
     CDS             complement(38997..39551)
                     /locus_tag="PXD41_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL6287619.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(39544..40080)
                     /locus_tag="PXD41_000047"
     CDS             complement(39544..40080)
                     /locus_tag="PXD41_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL6287620.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(40090..40401)
                     /locus_tag="PXD41_000048"
     CDS             complement(40090..40401)
                     /locus_tag="PXD41_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL6287621.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(40394..40870)
                     /gene="recX"
                     /locus_tag="PXD41_000049"
     CDS             complement(40394..40870)
                     /gene="recX"
                     /locus_tag="PXD41_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL6287622.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(40929..42035)
                     /gene="recA"
                     /locus_tag="PXD41_000050"
     CDS             complement(40929..42035)
                     /gene="recA"
                     /locus_tag="PXD41_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL6287623.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
BASE COUNT        12316 a         8198 c         9049 g        12522 t
ORIGIN      
        1 gaagattatt tttagttaac cttttgttaa gaaaagataa aggttgatca cagatttgag
       61 aacttaatgt ggcttttaaa aataggtggg ggaccattgt ttatttttaa gtaaagctgc
      121 ggctcaatag aagcgattgc gttagcgcaa tcatattttt taacccaaaa gaaaagtagt
      181 gcaaacaata tgattacaat caaaaaaggc ttagatcttc cgattgcggg aaaacctgag
      241 caagtaatcc ataacggtaa taccgttact gaagttgcta tgcttggtga agaatatgtg
      301 ggtatgcgtc cttcaatgaa agtgcgtgaa ggcgatgtag taaagaaagg tcaggttctt
      361 tttgaagata aaaagaatcc gggcgtggta tttactgccc ctgcaagtgg taccgtaacg
      421 gcaattaacc gtggcgagaa gcgtgttctt caatcggtag taattaaagt tgagggtgat
      481 gagcaaatta cctttgctcg ttatgaagcc agccaattag cttcattaac ttcagagcaa
      541 gtaaaacaaa accttgtaga gtcaggctta tggacggctt tccgtacacg tccgtttagc
      601 aaagtgcctg cattagatgc agaaccttcc tctatttttg tcaatgcgat ggataccaat
      661 ccacttgcag caaatccgga agtgattatt gcagaacacc aacaagcttt ctttgatggc
      721 ttaactgtat taagtcgttt atttgaaagt aaaaaagtga ttcatctctg tggcagtgca
      781 gactcaaata ttttaaatgc ggcacaaagc cgtcagatca ataatgtgga aactaaccgc
      841 tttaaaggtc cgcaccctgc aggtctttct ggtacgcata ttcactttat tgacccggta
      901 ggtgcaacta aacaagtttg gtatttaaat taccaagatg taattgctat cggtaaatta
      961 tttacgaccg gtgagctatt tactgaccgt gtagtcgcat tagccgggcc acaagtgaaa
     1021 aatccacgtt tggtgcgtac tcgtttaggg gcgaatcttt cacaattaac agccaacgaa
     1081 ttaaatgcgg gtgaaaaccg tgtcatttca ggttctgtgt taagtggtgc tatcgcaacg
     1141 ggagtacacg actatttagg tcgttacgca ttacaagtgt ctgctttatt agaagggcgt
     1201 gagaaagcgt tcttcggtat gattgctcct tactctgata agtattcaat tacgcgtact
     1261 actttagggc attttgcgaa gaaattattt aacttcacaa cagcagttca cggtagtgag
     1321 cgtgcaatgg taccaacagg ggcttatgag cgtgtaatgc cgttggatat cattccaaca
     1381 ctcttattgc gtgatttagc agctggagat acagactccg ctcaagcttt aggctgctta
     1441 gagttagacg aagaagattt agcgttatgt acttttgtgt gttccggtaa aaacaactgg
     1501 ggaccattat tacgtcaagc gttagataag atcgagaagg acggttaaaa atgggtttga
     1561 aaaatctttt tgaaaaaatg gaacccgctt tccataaagg tggaaagtat gagaaatggt
     1621 acacgctatt tgaagctgcc tatacgattt tctatacacc gggtacggtc actcgtaaag
     1681 atgctcacgt gcgtgatgcg attgactcta agcgtatgat gttaattgta tggttagcgt
     1741 tattccctgc gatgttctac ggaatgtaca atgttggtgc acagggtatt ctagcggcac
     1801 tcaaaatggg aacattaacg gatttagttg ctaacaactg gcactacagc ttagccgata
     1861 gtttaggctc tgtagctgat gcaggctggg gaactaaaat gttgctgggg gcaacctatt
     1921 tcctaccaat ctacttaaca gtatttgcag tgggcggttt ctgggaagtg gtgtttgcaa
     1981 tggtgcgtaa gcacgagatc aacgaaggtt tctttgtaac ctctatctta ctagcattaa
     2041 ttgttcctcc aacattaccg ttatggcaag cagcccttgc aactaccttt ggtgttgtgg
     2101 tcgcaaaaga agtgttcggt ggcgtgggta aaaactttat gaaccctgcg ttagccggtc
     2161 gtgctttctt gttctttgct tacccgggtc aaatttcagg tgatgcagta tgggttgccg
     2221 cagacggctt ctcaggtgca actgcacttt ctcaatgggc agttggtggt caaggtgcat
     2281 tacagcacgt tgcaaccggt gaaaccatta cttggatgga tgcgttctta ggtaatattc
     2341 cgggttctat cggcgagacc tctaccttaa tgttgattat tggtgctgca atcattgtat
     2401 ttgcccgaat tgcttcttgg cgaattattg ccggtgtaat gattggtatg gcggcaactg
     2461 cgacattatt taatgtaatc ggttctgata ccaacccatt attctctatg ccttggcatt
     2521 ggcatttagt attaggcggt tttgcgatcg gtatgttctt tatggcaacc gacccggtat
     2581 cagctgcatt taccaacaaa ggtaaatggg catacggtat cttaatcggc tttatgtgtg
     2641 tattaatccg tgtggtaaac ccagcatacc ctgaaggtat gatgttagcg atcttatttg
     2701 ctaacttatt tgctccaatc tttgactatt tagtagttca agggaatatc aaacgcagat
     2761 tagcgagggt agcaaacaat ggctaaattt aataaagata gcgttggcgg aacgctaacc
     2821 gttgtagttt tattaagttt aatttgttct ttgattgtgg caggtgcggc agtaatgctt
     2881 aaaccaacac aagatattca gaaacaactt gataaacaga aaaacatctt acaagcggcc
     2941 ggtttattgc aaaaagatac caatgtgcaa gaaacctata ccaaatttat tgagccgaaa
     3001 attgtcgatt tagcaacagg tgattacgtt gagggtgtaa ccggttttga tgctcgtgca
     3061 gcagctaaag atcctgctca aaatgtagtt atcgcacctg aagatgataa ggcgaatatc
     3121 aaaacgcgtg ctaaatatgc tgaagtttat ttagtaaaag atgaatctgg caaaacgact
     3181 caagtagtat taccaatgca cggtaacggc ttatggtcaa ttatgtacgg tttcgttgcg
     3241 gtacaacctg atgcaaatac cgttaacggt attacttact atgaacaagg tgaaacggca
     3301 ggcttaggtg gcgaaattgc aaacccgaac tggcagaaaa actttgtagg taaaaaactg
     3361 tataacgagc aaaaccaagt tgcgttaaga gtgggtaaag gggcatctgc agataaagat
     3421 cacggtgttg atggtttatc tggtgcaaca ttaacctcga acggtgttga tggttcattc
     3481 aaatactggt ttggtcaaaa tggttttggt ccatatttag caaaatttaa agcagcggca
     3541 ggagctaact aatggcagac aataacaatc ttaaaaaatt attgttatcg ccaattgtcg
     3601 ataacaaccc gatcgcatta cagatcttag gtatttgttc tgcgttagcg gtaacgactc
     3661 aattacaaac agcagtagta atggcgattg cggtaagttt agttactgca ttctcaagta
     3721 tgttcatttc aatgattcgt aactatattc caaatagtat ccgtatcatt gtgcaaatgg
     3781 cgattattgc atcattagta attttggttg accaaatctt acgcgcttat gcttacgatc
     3841 tgtcaaaaca attatcggta ttcgtaggcc ttattattac caactgtatc gtaatggggc
     3901 gtgcagaagc attcgcgatg aaatcaggcc cggttgaaag ttttgttgat ggtatcggta
     3961 acggtttagg ctacggtgca atgttaatta tcgttgcctt tttacgtgaa cttatcggtt
     4021 caggtaaaat tttcggtatc accattcttg aaactgttca aaatggcggt tggtatcaag
     4081 caaacggttt attcttatta gcaccaagtg cgttctttat tatcggattt gtgatctggg
     4141 cgattagaac gtggaaaccg gaacaagtgg agaaataaga tggaacatct tctgagtatc
     4201 tttgttaagt ccatatttat tgaaaatatg gcactttctt tcttccttgg tatgtgtaca
     4261 ttccttgcgg tgtctaagaa agtttcaact gcttttggtt taggtattgc ggtaattgta
     4321 gtacttggca ttgcagttcc agctaaccaa ttagtttata cccacgtatt aaaagagggt
     4381 gcattagtag aaggtgtgga tttaagcttc ttaaacttta tcactttcat cggggttatt
     4441 gcggcacttg ttcaaattct ggaaatgatt ttagacaagt ttttcccggc actttatagt
     4501 gcattaggta tcttcttacc acttatcacc gtaaactgtg cgatttttgg tggtgtatcg
     4561 tttatggtac aacgtgagta taactttgta gaatctgtgg tttatggcgt aggtgcaggt
     4621 acaggctgga tgttagccat cgttgccctt gcaggtttaa ccgagaaaat gaaatattcc
     4681 gacgtgccgg caggcttacg tggtttaggt attaccttta ttacggtagg cttaatggcg
     4741 ttaggcttta tgtcattctc aggcattcaa ttataaggag catatcgtgg atagtaattt
     4801 tattttcggt attatcgcat ttacggctct ggtattagtg cttgcggtga tcattctttt
     4861 cgctaaatca aaattagttg attcaggtga tattaccatc tcaatcaaca acgatccgga
     4921 aaaaggcatt acgctaccgg ctggtggaaa attactcggt gctttagcaa gtaaagggat
     4981 tttcgtttcg tcagcttgtg ggggcggtgg ctcttgcggt caatgtaaag tacaagtgaa
     5041 atcaggcggt ggtgaaattc ttccaactga gttatcgcac atttctaaga aagaagcgaa
     5101 agaaggctgg cgtttagctt gtcaggtaaa cgtgaaatct tcaatggacg ttgaacttcc
     5161 ggaagagatc tttggtgtga aaaaatggga atgtaccgtt atctcaaacg ataacaaagc
     5221 aaccttcatc aaagagctta aacttcaaat tcctgaaggc gaagaagtac cgttccgtgc
     5281 gggtggttat atccaaattg aagctgaacc tcataccgtt cattataaag acttcgatat
     5341 tccaaaagag taccacgaag actgggataa atttgactta tggcgttata cttcaaaagt
     5401 ggacgagcat attattcgtg catactcaat ggcttcatat ccggaagaga aaggcattat
     5461 tatgcttaac gtgcgtattg ctacacctcc accacgcaat ccggacgtac cgccgggtca
     5521 aatgtcttcc tacatttggt cattaaaacc gggtgataaa gtaacaattt caggtccatt
     5581 cggtgagttc ttcgctaaag ataccgatgc ggaaatggtc tttatcggtg gtggtgcagg
     5641 tatggcacca atgcgttcac atatcttcga ccaattaaaa cgtttaaaat ctaaacgtaa
     5701 aatgtcattc tggtatggtg ctcgttctga gcgtgaaatg ttctatgtgg aagattttga
     5761 tggtcttcaa gcagaaaacg ataacttcaa atggtatgtg gcactttctg atccattacc
     5821 gggcgacaga gaagattact tccgtggctt tattcataac gtgctttatg agaactacct
     5881 caaaaaccac gaagcacctg aagactgcga atactatatg tgtggtccac cggtgatgaa
     5941 tgctgcggta atcggtatgc tgaagagttt aggtgtagaa gacgaaaaca tcttattaga
     6001 tgactttggt ggttgataaa ccttaacttc tgactacaag cggtcaaatt tgcaaaattg
     6061 accgcttgat ttaatttata ttattaagtt ttggtaattt aataatgtga attttaaggg
     6121 gaagcaaatg gaacaactgg atattacggt acttgaaaat gccttcaatt cccttgagaa
     6181 aacgattgtc agccttgaga atcaagcgtg gtttaaccgg caagaagcaa ttattcaaga
     6241 cactttgatt gcaggagcaa tccaaaaatt tgaatttgtt tacgaattgt cgataaaaat
     6301 gctcaagcgt cagctcaaaa acattgagtc aaatgacact gatattgata gcaccgagtt
     6361 ccgtgatatt ttgcgaatgg ctgctcaata tgggctgatt gaatcaccgg aagtttggct
     6421 ggattatcgc aaaatgcgaa atattacttc gcatacttat gatcaaaata aagcacagca
     6481 ggtttataac ggaatttcaa actttctgga aagtacgtat tttttagtta aacagctcca
     6541 aaaacgcaat agctatgatt gatttaactg agtcacaacg ccaacaggtg ttggatattt
     6601 tcaaaaaata cttgcctgat acacccgttt gggtttttgg ctctcgcatt aaaggcacag
     6661 ccaaagccta ttcggatctt gatttagcat taatcaccaa acaaccgctc acaattcggc
     6721 aacaaacaga gttagagctt gcgtttacgg attctgacct acctttcaca gtagatctga
     6781 ttgactgggc aagttgcaac gaatcgttta aacaaattat tttacagcga tatgaagtgc
     6841 ttatttaatc gctaaatatg ctataatttc cccaattttt aacttttgtg acaccaatga
     6901 aaaaattttt tcttctttta attgcttttt ttactttaag tgcttgtgaa aaagcccctg
     6961 agcaaattac gctgtcaggc aaaaccatgg gaacgactta caccgtaaaa tatattgata
     7021 atggtgaagt ggagaatttg atttcgcctg aaaaaatgaa aaatgagctg gatggcttat
     7081 tgattgaggt gaataatcag atgtccacct accaacaaga ttcggaaatt agccgtttta
     7141 atcaagcaaa gcaggcaaat caagcggtcg aaatttcgca ggattttgca aaagtggtac
     7201 aagaggcaat ccgtttaaat aaagtaaccg aaggggcttt agatgtaacc gttggtccat
     7261 tggtgaactt gtggggcttc gggccggata aacgcttaaa taaagtgccg tctgatgaac
     7321 aaattgcaga gcgttctgct tatgtcggca ttgataaaat tttgcttgaa atgagtagta
     7381 aacccaagct caccaagtca gcagctaatc tttatctaga tttatcgtct attgcaaagg
     7441 gtttcggtgt agataaatta gccgagcatc ttgaaactat aggtgtgagc aactatttag
     7501 ttgaaattgg tggcgaatta cgaggcaaag gaaaaaattt acaaggctta gattggcgga
     7561 ttgcaatcga gaagccggta atgacacaag gtcaagccgc acaaattacc gtgccgttgc
     7621 acaatttggc gatggcaact tcgggcaatt atcgtaatta ttttgaagat gaaaaaggca
     7681 accgtctttc acatattatc gacccaaaac agttacgtcc ggtaaaccat aatttagcct
     7741 ctatcaccgt atttgcccca actacaatga cggcagacgg cttatcaacc ggtttatttg
     7801 ttttaggagc ggaaaaagca ttagcagtgg cagagcgtga aaaattagct atttttttaa
     7861 ttgttaaaaa cggcgataaa tttgagacac aaatgtcgag cgaatttagc aaacttattc
     7921 aatcacaata gttggagtga aaaatggaaa ctgtattatt aacctttggc ttttttgtag
     7981 ccgtaatttt tgcgatgtcg attggtttta tcgtgaaagg caaaaccatc aaaggcagct
     8041 gtggcggtat caccgcttta ggtatgaaaa aaatgtgcga ctgcgaagaa ccttgcgata
     8101 acctaaaatc taaaatcgca gacggcacag ccgaccctga agaagtggca cgttttaata
     8161 aagagccaca attttatgaa gtgaaataat atgaatagag atattcgctg gaaacagcgg
     8221 tttgataact ataaaaaatc agtaagttac cttcaagcag aagcagaaaa atacgctgat
     8281 accgacattg atgtaattaa aaaaggaatt atccagagtt ttgagattac acacgagtta
     8341 gcgtggaagt taatgcaaga tattttaaaa tgggaaggtg aagttgatat ttatggttca
     8401 aaaacggctt ctcgtttggc ttttaatcgt gggctaatca ctcagggcga agtttggcta
     8461 gaaatgataa aaagccgcaa tataacagtt catactgacg atgaaactat tttaactgaa
     8521 gaatttaata aaattatcaa ggcgtatctg cctttattta ttgaatttga acagcgagta
     8581 gaaacactat gccaaacttt ggactaagcg aacgagcgac gaaaactatt accgatattc
     8641 ttgcgaaata ccctgaagtg gagcaagcca ttatttacgg ctcgcgtgct aaaggtaatt
     8701 atcgtgaagg ctcagatgta gatcttactt ttaaaggaaa agatcttact tacgatattg
     8761 tcaaacgcat ttggggtgat ttagacgatt ccgactcgcc ctatttattt gacttgtcga
     8821 tttatcatca attaaccaat gccaacttta ttgaacatat tgatagagta ggaaaagtct
     8881 tttaccaaag agaactctaa tttcttaata ggcaagcggt tcattttgca aaattttttg
     8941 caaatttcac cgcttgttgt ttttattatt aaccaatgtg cttcgcctta accgaagtta
     9001 cgggagattt atgacaactc aattaacctc aaaaacctac gacactcatt tccctaaatt
     9061 aaccccagaa caacttgctg aaaacagcaa gaaaaaagtc attatcggta tgtccggtgg
     9121 ggtggattcc tcggtttccg cttttattct tcaacagcag ggctaccaag tggaaggctt
     9181 gtttatgaaa aactgggaag aagatgatga tacggattat tgtaccgccg ccgccgagct
     9241 tgccgatgct caagcggttg ccgataaact gggtatgaaa ctgcataaaa ttaattttgc
     9301 agcggaatat tgggataatg tatttgaata tttcttggca gaatacaagg caggaagaac
     9361 gccaaatccg gatattttgt gtaataaaga gatcaaattt aaagcctttt tggaatatgc
     9421 ggcagaagat cttggtgcgg attatattgc gaccgggcat tacgtccgcc gtacgagcga
     9481 tgatcaagat gcgaaacttt tgcgtggctt agatgaaaac aaagatcaga gttacttttt
     9541 atatgcgtta aataaaaagc agatcgggca gagtttattc ccagtgggtg aaattgagaa
     9601 gccgattgtg cgagccattg ccgaagacct aggattagca accgcaaaga aaaaagattc
     9661 taccggcatt tgttttatcg gtgagcgtaa atttaaagat ttcttagctc gttttctacc
     9721 ggctcaaccg ggggaaatcc gcaccgttga gggcaaatta gtcggtcgcc atgatgggct
     9781 gatgtatcac acgcttgggc aacgcaaagg cttgggtatc ggtggggtga aagggctaag
     9841 tgaagatccg ttttatgtgg tggagaaaga cttaattaac aatgtattga ttgtggcaca
     9901 aggacacgat aattcagccc tgctttcaag tggcttaatt gcgaaacagc tcacttgggt
     9961 ggatatgcag ccgttgcgtg aaaatttacg ctgcacggta aaaacccgtt atcgtcaagc
    10021 agatattgcg tgtgaaatcc aagtgattga tgatgaaacc attcgagtga tgtttgatga
    10081 accgcaaatt gccgtgacgc cggggcagtc tgccgtgttt tacttaggtg aagtttgctt
    10141 aggcggtggc attattgagt cacaattaaa atagttataa ataaatattg aaatattttg
    10201 catatttatg caaaataagc gaaaagttaa ggcggtaaaa cgcctttttc attttgatcg
    10261 atacaaagaa taatatacaa ggaacagact gtggcacttt ggggtggacg ctttacacaa
    10321 caagcagacg caaaatttaa atattttaac gattcattac gttttgatta ccgcttggcg
    10381 attcaagata ttgaaggctc aatcggctgg gcaaaagcca ttacttcggt aggtatttta
    10441 acggtagcag aattagaaca actaatcgca gcattaaaag aggtgagagc agaggtagaa
    10501 tctaacctta ccatcatctt aaaagatgat gcggaagaca ttcacagctg ggttgaatct
    10561 aagctgattg aaaaagtggg cgatttaggt aaaaaattgc acaccgggcg tagccgtaat
    10621 gaccaagtag cggtggatat taaaatgtgg tgcaaggtgc aagcggtggc attgcaagaa
    10681 agaatccgag ctttgcaaga gcgtttggtt tccgttgccg aagaaaatca agagtcggtg
    10741 atgccgggct atacccattt acaacgagct cagcctgtga ccttcgctca ttggtgtatg
    10801 gcgtattatg aaatgctaga acgggatttc agccgtttga gtgatgctaa taaacgtatg
    10861 agcacttgcc cgcttggttc aggggcattg gctggtacgg cttacggcat tgatcgtgac
    10921 ttattagccc gtgatttagg ctttgaagaa gccacacgca acagtttaga cagcgtgtca
    10981 gatcgtgacc atattttaga gctgctctct actgcctcga tcagtatgat gcacctctct
    11041 cgctttgctg aagatttaat catttttaat agtggcgaat caggcttcct tgaaatgtcg
    11101 gatcgtgtga cctcaggctc atcacttatg ccacagaaga aaaaccctga tgcttgtgag
    11161 ctgattcgtg ggaaatccgg tcgggtattt ggggcattaa acggtttatt aactacactc
    11221 aaagggttac cacttgctta taataaagat atgcaagagg acaaagaggg tatttttgat
    11281 gcgttggaaa cttggcaggc ttgtttagaa attgcagaac ttgtactggt tgatattcaa
    11341 gtgaataccg aacgcacccg agaagccgct cagcaaggtt atgcgaatgc gaccgagttg
    11401 gcagattatt tagtggcgaa aggcgtgcca ttccgtgaag ctcatcatat tgttggcgaa
    11461 gcggtggttt acgcaatcag caaaaaagag ccacttgaag cattaagcat taacgaattc
    11521 cagcaattcc atcattcgat tggcgatgat gtttacccaa ttctctcgtt agaatcttgc
    11581 ttagaaaaac gttgtgccaa aggtggagtg aacccacaac gtgtggcaga ggcgattgcg
    11641 gtagccaaag ccaatttagc ttcaaagtaa aaccggatac aagcggtcat attttgcaaa
    11701 aaaattgaaa aatatgaccg cttgccgatt aaattttcaa ttttttacgc attaagattg
    11761 caaaataggc attacctctt taaacttccg aataattttt gaattttatt tctactactt
    11821 tctttaaaga gttttatatg acggaatcag ttaattctac tcaagctggt acagcacttt
    11881 ctttagggca acaattaaaa gcggctcgtg aagcgttaaa tctctctatt acagatgttg
    11941 ctcaaaaaac caacttaaaa aaatcacata ttgaatcact tgaaaatgat atctttattc
    12001 tacaaaatgt tgccccaact tttgtgcgtg gctatgtgcg taattatgtg aaatttttgc
    12061 gtttacctga atcccttatt tcgagcgtta attatggtga agtcactatt ccaaaagaag
    12121 tcactaaagt ttcttcagta aaaccttcat caaattcaca aggtaaaacc ttaaagtatt
    12181 taacggtatt agtattgctt gcggcattag gaatgacatt actttggtgg tggcaagggt
    12241 atcaaaaaga acaggaaaat cgcgagcaat ttgttagctc tgcaccagtt gctgaagtgg
    12301 cgaataccgc tacaaataat gatgcttcag cacaaacttc cgtgcctgtt cagcaaccta
    12361 ttcaggtttc agagcagcct gctcaagtag cagaaacggt agttgcagca gaaccggcat
    12421 taactgaaaa agtagagcct acacaagcag catcatcacc tgtaacacaa gaagatgtta
    12481 aagtggtaga agaagttaaa caagctgatg ccaccactgc acaggttgag gcagttaatg
    12541 ttttacagca atctcaatcg gaacaagccc ctacagaaca gcctgttgcg gtaacgaatg
    12601 atgagcttcg tatcgaaatt accggttcac aaagctggat tacagtgcgg ggtgctaaaa
    12661 ataaacgttt agcagaaaaa ttatataaca atggtgagac tttaagtttc aatgagaatg
    12721 agcaatatcg tttaaccatt ggtgcgcctg ccaatgtaaa agtgtactat aaaggtcaag
    12781 aagtaccatt gaaaattgat gggcgtgtag ctcgtattca tttaccgtta cagtaagctt
    12841 gatttaacga tgaaacgcac gtaaagctag catttaacga tagctgtctt tacgagcgtt
    12901 ttctgttttt ataaattttc acaattagct aaaaatatga tacatcaatc acctattaaa
    12961 cgtcgggtat cgaagaaaat ctatgtgggt aatgtgcctg taggcggcga tgcaccgatt
    13021 acggttcagt caatgaccaa cacccgcaca accgatgtgg aagccaccgt tgctcaaatt
    13081 aaatcgctgg aacgggtcgg ggctgatatt gtgcgtgtgt ctgtgccgac aatggacgct
    13141 gctgaggcat ttaaagcgat taaacaacaa gtgagtgtgc cattggtggc ggatatccac
    13201 ttcgattacc gcattgcgtt gaaagttgcc gaatatgggg tggattgctt gcggattaac
    13261 ccgggtaata tcgggaatga agagcggatc cgcacggtgg tagattgtgc cagagataaa
    13321 aacattccga tccgaatcgg ggtaaatgcc ggatcattag agcgtgattt gcaggaaaaa
    13381 tatggcgagc cgacaccaca ggcattatta gaatcggcat tacgccacgt tgatcactta
    13441 gatcgcctta actttgatca attcaaagtc agcgtgaaag cctcagatgt atttctagcg
    13501 gttgaatctt accgacttct tgcaaaacag attgatcagc ccctgcattt aggtattact
    13561 gaagcaggcg gagcgagagc cggttcggtg aaatcggcgg taggcttagg tctgttgcta
    13621 gcggaaggga ttggtgatac cttgcgtgtg tcattagcgg ctgatcctgt tgaagaggtg
    13681 aaagtcggtt ttgatatttt gaaatcgctg cgtattcgct ctcgtgggat caactttatt
    13741 gcttgcccaa cctgctcccg ccaagaaatt gatgtgattg cgacggtaaa cgagctagaa
    13801 caacgtttag aagacattat cacgccgatg gacgtttcga ttatcggctg tgtggtaaac
    13861 ggtccaggag aggcgttggt gtctgattta ggggtaaccg gcagcaataa aatgagcggc
    13921 ttttatttag atggcgttcg tcaaaaagag cgttttgaca acgcaaaatt aatcgaccaa
    13981 ttagaagcta aaattcgtgc cagagttgca caacaacata atcgtataga tattgaacaa
    14041 ataggataaa tatagtggca aaaacaattc aagcaattcg aggaatgaac gactgctcac
    14101 caagtgagtc tccattatgg caatgggttg aacagaaagt gcgtaatgtg ctggcaagtt
    14161 acggctattc ggaagtacgt atgccgattg tagaaagcac tccgttattt gcccgtgcca
    14221 ttggcgaagt aaccgatgtg gtgtcgaaag agatgtacac gttctgggat aacgatgagc
    14281 aattaacgct ccgcccggaa ggtacagccg gttgtgtgcg tgcagcgatt gagcgtggtt
    14341 ggatctacaa taatgagcaa cgcttatggt atatggggcc gatgttccgc cacgaacgtc
    14401 cacagaaagg gcgttaccgc caattccacc aagccggtgt tgaagtgttt ggcattgcaa
    14461 atccggaaat tgatgcggag ttgattattc tcaccgcacg cctatggaaa gagttaggca
    14521 tcgatcaaca tgtttctttg caacttaact ctatcggctc gttagaagct cgtgcaaatt
    14581 atcgctcagc attagtaaaa tttttagaaa atcacaccgc tttaatgaac gaagaagaga
    14641 aagagcgttt ggtgaaaaac ccgctacgga ttttagatac caaaaacgaa gcactacaaa
    14701 atgtattaaa cgatgcccca aaactgctcg attatttaga tgatgacagc cgtgaacatt
    14761 ttacccaact ttgtgcctta cttgatgcaa tgggaatccg ttacgaagtc aatccaaaat
    14821 tggtgcgtgg tttagactat tacaataaaa ccgtgtttga atgggtcact tcagccttag
    14881 gctcacaagg caccgtatgt ggcggtgggc gttatgacgg cttagtcgaa caactcggtg
    14941 gacacgcaac ccaaggcgtt ggctttgcaa tgggcttaga gcgtttagtg ctgttggtac
    15001 aagaggtgaa taaagagatt gatttaccaa aaacggtgga tgtgtatatc gtattctccg
    15061 gtgaaggggc aacactaaat gccttccaac ttgcagagca gattcgtagc gaattgccac
    15121 acgttggcgt aatgacacac tgttccggcg gtaaattcca aaaacaattt aagcgtgcag
    15181 ataaagtaga agcgcaaatt gcgttagtga ttggcgaaag cgaagtggct gaaaagcaag
    15241 ttgttatcaa agatttacgt tcaggagcag aacaaatcac gattgctcaa tcagagctga
    15301 ttgctgagct atctaaacga ttttaggaga aaaagatgag taacgaatat ttaaataaaa
    15361 ccgaagagca gcaatttgaa gatgccaaaa attggtttaa agagaacggg acaccgattt
    15421 tggtggcgat tattttagct tgtgcggcaa ctgccggctg gaatttttgg aaaaatcacc
    15481 agcttgaaac ggcacaaaaa acatccgctt cataccaaag cgtgatggag agttatttgc
    15541 aaaatccaag caaaaatcaa ccgcttgttg agaaatttat tgccgataat aaagattcaa
    15601 gctatgccgc ttttgcccaa tttgaagtag ctaaacaagc ggtcgaaaaa gggaattttt
    15661 ctgcggcaaa aacagcgtta cagtcagttt tgacttattc ggattcaacc ttacaatcta
    15721 tcgctcgttt tcgtttggct caaattgact tccaactaaa atcttacgat gaagcactgg
    15781 caagtctggc tcaaattcaa gataaagcgt gggaattgcg taagcaaatt ctaacaggcg
    15841 atattcttgc agcaaaaggc gatattcctg cggcgaaaag tgcttatgag caagctaaaa
    15901 cgaccgcaaa tcctcaggaa caaaccttaa ttgatgtacg tttgaataac ttataaaaac
    15961 aaagcctgat tgaaataaaa tcaatcaggc ttttttgttg gtttagtgtt gctgtgaatt
    16021 ataaacgcat tggcataatc acatattcgg cagagctgtt gtcgcaatct tcaattaagc
    16081 aactagaact tgaatcaact aagctaaaac gcacacgttg gcattttaag gtgtttaaca
    16141 catctaatac atagctaacg ttaaagccga cttccatttc cgggctgtcg taggcaacat
    16201 caatgatctc ttccgcctct tcttgctccg gattgtttgc ggtaattttg agtaaattat
    16261 tgcttaaggt taaacgcacc cctctaaatt tctcattaga aagaatcgct gcacgcatta
    16321 atgcccgttt aagggtttcg gtttccgctt ctagaatgcg atctgcattg cgaggcagaa
    16381 ctcggcggta atccgggaat ctgccatcaa tcagtttaga ggtaaataca atgccgttca
    16441 ttgtaatacg gatattgctt gaaccgattt ccaaacgcac ggtttcatcg ttgctggcaa
    16501 ccaagcggga aagctcaagt acggctttgc gtggcacgat aaccgaatga gtcaaaagct
    16561 cttgatttag caccattgtg caaaccgcta aacggtgccc atctgtggca acggtgcgta
    16621 ataaattgcc ttcggtttca aatttcattc cgtttaagaa ataacgggcg tcttggtttg
    16681 ccattgagaa ttgggtggca tcaatcagac gggcaagggt agattgatca atcgagaaat
    16741 ccacttccgg tttccaatcc atcaaattcg ggtaatcact tgccggtaat gtagctaaac
    16801 taaatttact acgtcctgct ttgataatgg ctttatcttc ttcaaattgt accgaaatca
    16861 cgctgtcatc aggtaggctt ttactgatat ctaggaattt tttagctgga atggtaaatt
    16921 ttccggcaaa atcgaccgct tgtagcagtt gtgcttgggt ggttaattcc acttctaaat
    16981 cggtaccggt taaagataga cgattacctt caatttctaa taaaagattg ttaataacag
    17041 gcaaagtcgg acggctactt aatacgccac acacctgttg taaaggctta agtaattgtt
    17101 ctctggtaat ggtaatttgc ataatcattc cttcatcggg ctaagatgat aatttgcgtg
    17161 ttaaatggat ataatcttct tggataccgc tttcggtatc gcgtaattca ttaatggttt
    17221 tgcaggcgtg catcacggta gtatgatccc gaccgccaaa ttcccgacca atttccggca
    17281 agctgtggtt ggttagctct tttgccagtg ccattgccat ttggcgagga cgggcaatgc
    17341 ttcttgcccg acttttcgat ttaatatcgg caacttttat gccgtaatat tcggccacaa
    17401 tgcgttgaat attttcaatc gtaatcaagt aatcaaaaga ggcaaacaga tcttgcaagg
    17461 tttcacgcac cgcatcaacc gtaatcgggc gaagggtcaa tttttgccac gcaatcacac
    17521 ggtttaatgc tccctccaat tcacgcacat tggttcggag tttttgcccc attaaatagg
    17581 cggcatcttc ttgcaaatct gctccacgtt ctaaggcttt ttggcgaaga attgccactc
    17641 gggtttccaa ttcaggtggc tcaatggtcg cactaatacc gccgcttaaa cgggatttaa
    17701 tcgctgtgtc aattttatcg atattttttg gcaaaacgtc agaggttaga ataatctgct
    17761 ttctctgctc aaataaagca ttgagtagat gtaaaaactc ttcttgtact ttcggtttat
    17821 tggcaagaaa ttgaatatcg tcaatcatta acacatcaag cgagcggtag aattttttga
    17881 ttttttccgc atcgttattg gaactgttga tcgccttaat aatatcacga taaaaacgtt
    17941 ccaaatgaat atatagcacc cgagtacccg gtgtgcgttt aactaattca ttgccgatag
    18001 cgtgtaataa gtgggttttg cccaaaccgg tgccggcata aaacgagagt gggttgcaat
    18061 ggctttcgcc taaattatcc accacttgtt gagccactaa tttagctaat tggtttgagc
    18121 gaccttgtac aaaattatca aaggtttgat ttggatttag cccggtttta aagccggtat
    18181 tgctgaattc tgaactctcg ttttttagat ttgggctgac ctttggctgt tctgtcggtt
    18241 taatcccaac ttttaacgta accaccaaat tatcattttt cgccaaaaaa cgggcaagct
    18301 cggtaatttc cgataaaaat ttatctttta cccagttttc aacaaattga ttttgtgcat
    18361 aaagtgtaag ttccccattc tcagaactcg cttgcagagg acgcagccaa gtgctgtaat
    18421 cagttggtga gactttcgtt tgtaagtgat taaggcaatc agaccaaagg gaagacacaa
    18481 tttgctccaa aattattgtt attaaaggtc ataatgatac ctgaaaaaag gggagaaatc
    18541 ttgcaaattt ttgagagatt ttatgggggc ttggaagcga ttttaattgg cgaacaagcg
    18601 gtcgtttttt gttgaaatct tgcaaattgc taacaaaaaa tgaccgcttg cttagtatga
    18661 tgtgtgatgg agttgattaa atatccgtat tctccggcaa gaacccaccg ctttggtgag
    18721 cccaaagtct ggcgtaaaca ccgttttgag caagcaattc ttcgtgcgtg ccttgttcaa
    18781 cgatttcgcc tttatctaac acgataagtc tgtccattgc cataatggta gagaggcggt
    18841 gggcaatcgc aaccacggtt ttaccttcca ttaattgcgt gagattttct tgaattgcca
    18901 cttctacttc agagtctaac gcactggttg cctcatcgag taataaaatc ggagcgtctt
    18961 ttagcatcac tcgggcaatc gcaatccgtt ggcgttgtcc gccggaaagt tttacccctc
    19021 gttcgccaac gtgtgcatca aaaccggttc tgcctttggc atcttgcagg tttggaataa
    19081 attcactggc ggcagcttgt tcaacggctt tgatcatctc ttcttcagtg gcgtttgggc
    19141 gaccgtacat caagttttca cgcacagagc ggtgtaacag cgaggtgtct tgagttacta
    19201 aaccaatttg tgagcgaagg ctttcttggg taatatcacg gatattttgc ccgtcaatcg
    19261 tgattgaacc gtcttgaata tcgtaaaaac gcaataataa attggtgagc gttgatttac
    19321 ctgcaccact acgcccgact aagccgactt tttcccccgg ttttatagtg aggtcaaaat
    19381 ctttcagtag cggttttttc ggatcgtagg caaaatccac attctcaaat ttaatttcgc
    19441 ctttggttac atttaacggt ttcgcatcga ttttatctac cacattgtgt ggtttggaaa
    19501 gcgtaatcat accgtcttgt accgtaccta aattttcaaa tagacgagca aattcccaca
    19561 taatccattg tgataagcct ttaatgcgta aagccaaagc ggttgaggtg gcaatcgccc
    19621 ctgcagttac tacgcttgaa ccccaaagcc ataaaccgat acccgcagtt gaaattatta
    19681 atgccatcga ggttagatta gttacggttt caattacagt cactaaacgc atctgtttat
    19741 gcactgtcac cataaatcct tccatcgact ctttcgcata ggcagattca cggttgccgt
    19801 gcgagaagag tttgacggtg gcaatgttag cgtaagcatc ggtaattcga ccggtcatta
    19861 aacttctggc atccgattgc tcttgagcag cttgggctaa tttcgggaca aagtagataa
    19921 tggttgccgc taatgagatg acccataaaa taaacggcac gaataaccag ccgtcaagtt
    19981 gtaataaaat cacgctggag gtggtgaagt aaaccagcac atacaccaac atatcggcac
    20041 aagtcataat cacatcacgc acggaaaggg cggtttgcat tacttttgca gacactcttc
    20101 ctgcaaattc gtcttgatag aaacctaaac tttgcccaag cattaagcgg tggaagttcc
    20161 aacgcaaacg cattggaaat accccttgca gagattgaaa gcgaatgctg ctggcaaggt
    20221 aaacaaacac cactgcaagt agggcaataa aaaacatacc gataatcgtc cagccttttt
    20281 ctgcccaaag ttctgttggc gagtatttat tgacccaatc gactaaatcg cccataaagc
    20341 gaaacagaac cgcttcgata ataccgacag ctgcaactaa tacggtcagt agtaagatat
    20401 aaaaccgcat tcctttagtg gcatcgtaaa taaaaggaat gagacctgat tttggagttt
    20461 tcggcatttc atttggatag gtttccaccc ttgcctcaaa ccatttaaac agtttttcaa
    20521 acataaattt gtgatttccg aataaaaatg caggggcaaa tagccatttg cccccgaaaa
    20581 aatgtgaaaa aattatggat taagtaattt ttcgtctaag gctaaatctt cgttgcgatt
    20641 tataccaatg ccggcagcta atacgttgcg ggcaatttga tgtgcttctt ttaaagaatg
    20701 ctctttgtaa gagccacatt gatattcatt cagctcaggg attgccgata catcaggaat
    20761 tttatgtaac gcatcttcca ttgatgccgt ccaagctttg acaacttctt ctgctgaagg
    20821 cgatccaatc agtgacatat aaaaaccggt acgacaaccc attggtgaaa tatcaatgat
    20881 ctccacttgt tcgctattga ggtgatcacg cataaaaccg gcaaaaagat gttccatcgt
    20941 gtgaatccca cgcaccggta gaatatcaat attcggacga cagaaacgga gatcgaacac
    21001 ggtaatggta tcgcctttcg gtgtggtcat tgtttttgca acacgcacgg ctggtgcgtt
    21061 cattttggtg tgatctactt taaaactatc taataaaggc attttttact ccatcaatat
    21121 tattccgcaa ttccttgatc ccaagccggg gcttcatcag gtagtttgcg ctgtaagaaa
    21181 aatcgtctgt ttggctgggc ttgaggcttc accactttag tgtaaggggt agagaactca
    21241 ataccgccat ttaataactg cgacattgtg ccggagttca tacttacacc ttgcaggctc
    21301 acgtccatag tgtaacctga agcttgccag aattgggtat tggttctgac taagtgcttg
    21361 tatttatctt gaatattgac ataaataagc actcgatcgc ctaactcact tagccctaaa
    21421 cggctgacta ttcccacctg cattccacgg taaagcaccg gtgcttccgg ctgaataccg
    21481 ttagcattgg tggtttcgac aataatgggg aaaccgttgg cataggtggt ttttaccgta
    21541 tcggtatctg caagaacaaa ttggttttga gcttgccctg aaccgacatc aaccgtaatg
    21601 taattttgta gtgctgcatc taaattttta aagccggagg tactgatttc aggcgagata
    21661 acattaaatt tactgccggc ttttgcaatt aacggatagt atttcctttg aatgtaagcg
    21721 gtcgctttta tctgtttttt tgcattttgt agctcaagtt tttcaatttg acctacggtt
    21781 aagcccatat atttaatgtc cattccttcg cttaacttac tcgcatcttt tgcaatcagc
    21841 gtgagataag tattgcccga agtggctttc tccttacttg cataaagcgt tttattgcct
    21901 tttgaaccgc catcatcaaa gctgatcgcc ccttttaagg tacgcattaa tggagctgta
    21961 gtgatattca cgcctttgag tgacacatca acactcgttg ccggctcaat ccagaaacgg
    22021 cttttctcgg ttaatagatg acgataattt ggctggataa atagctcaac ctcaaatttt
    22081 tgttgtttcg gggttatttt taacacctcg ccgacctgaa aatcacgata tagcaccaaa
    22141 gagccttcgc tgataccaga taatgaatct gccgaaaggg tagtggtggc ttttttatct
    22201 aaggtagcca tgcctgattc cgcactttct atatctttat aaagtgcata ttgttttttc
    22261 gggctaccgt catttttacc gttaattaag cgaacaccgc cttttaacca ttcagatggt
    22321 gaaccggcgt gaactcttaa cccatctagc cccaccgaca tatcaatgtt ggatatcgca
    22381 acaaatttgc tgttactccc aatcaggttg cgataaggcg gataaataat gacatcaaaa
    22441 cgtactttgt ctaactctag gctacgtttg acgatttctc cgatttgcac atcgctatag
    22501 taaatcccct gattggtatc taccccatag gcttgaggag caattaagct aaagctaagt
    22561 aaattcggta aacttaatag ataatcggct tcgttttgta ccacaaattc cgattgaggt
    22621 tctccttccc ccgggtgaac ctcaaaatag acaccacgca gcagctcacc tactttcgtc
    22681 agctgctctg tgtttaagga gaatttcggc tctttgagca agattttagt ttgggaacgt
    22741 agtaaatttt cataacttgg gtcaattaat aaaaccccat caatctgttt atgctgccct
    22801 gattcttgct gtggcacacc gttgtctttt acttgcggta attttagctg cgaaagcata
    22861 ccaatttgca cattttggtg aaaaacacca gtctcattaa tttttaaatt atgtgtaagc
    22921 ggtagtttta cgttgatttc aattccacgt ttagctgatt tcaaatccgg atatagctca
    22981 aatttctgtc cttgctcggc aatttccata ttatcaggcg aatcaaaagc aaccgcacct
    23041 tgtactaccg aggcaaggct gtccatattg attttaatac cttgtaaatt tacatcagcg
    23101 ctaataccgc taatattcca aaatcggctc tcttttttta ctaaatgagc gtatttttga
    23161 ttaatgacga catcaatttc gatttttttc tggtctttgg taaaacgata atcggcaata
    23221 ttacccactg gcactttacg gaaataaaca ctcgctccga cagtaataga gcctatgtca
    23281 tcagagatta aacggatcag taaatcgcca tcgctcacgg taatagccgg aggatcttct
    23341 tctgcaataa attcatcaac gaaatcgcct tcaccgggaa gtagggtaat atagttacca
    23401 gaaacaatcg catctaagcc tgaaacgcca gccaaagaag cacttggttg cactaaccaa
    23461 aatttagtct gtttgcgtaa aatacttttg gcttcagggt ttatttctgc ttgcacttcc
    23521 acttctttta aattatcgac aaaataaaca cgcttaacct gaccaatctg caagccttgg
    23581 taacgaatag cggtttttcc ggcagtaatg ccatcacctt tactaaatcg aatcgtgatt
    23641 gtttcacctt gctcttttaa aatttggaaa aatagcaaag caccaataat aaaagcaact
    23701 attggtaaca gccaaaaagg agaaattttg cgaggctgcc ggatttgggc atctacaaca
    23761 gtgtgggtat tttcttccat cgtcatttta aattagggaa acctatatag aacaataccg
    23821 aagacccaaa gggacttcgg taatagaaat aagtcaaaat aagaaatatt attttttctc
    23881 atcacagttg gttaaattac tgcatttacc atacagatat aaactgtggt tagtcaattc
    23941 cattccgtgt ttttcactga tttcacgttg gcgacgctcc atatcaggat ctttaaattc
    24001 gaacacctta ccacaatcca tacaaataat atggtcgtgt tcgtggttca tatttaattc
    24061 gaatactgct ttattcgcat cgaaattatg gcgggttaaa atgccggctt cttcaaattg
    24121 gtttaagaca cgataaaccg ttgctaaacc aatgtctgag cctttttcta acagaatctt
    24181 ataaatatct tctgctgcaa aatgttgcat ttcatcacga atatcttgca ttaatgcaag
    24241 gatagtcaaa cgaggctcgg ttacttttaa gcctacctct tttaaacgtt taatatttgc
    24301 ttcagacata tatgccactt atttatcttt atccaaaata gttattatgc gagttggtct
    24361 aagcacattt cttctttcaa ctgctcgcac catttattaa cacgttcagt ggttaattca
    24421 ggctgacgat cttcatcaat acataagccg acaaaagtat catcatcaac taaggcctga
    24481 gaaacctcga aagtgtaacc ggcagttggc caatgaccaa caatcacacc accatttggc
    24541 tctaccacat cacgcacagt acccattgca tcacagaaat attctgcata atcttcctga
    24601 tcaccgcaac caaaaattgc aacgactttg ccgttaaaat caatctcttt tagggtaggc
    24661 ataaaatcgt cccaatcggc ttgcgattca ccataatacc aagttgggat cccaaacatc
    24721 agaaaatcgt atgcttcaat atcttctttt gtgcttttgg caatgtctcg aatatcaatt
    24781 aattcagccc ctaatttttt ctgaatcatt tttgaaatat tttctgtatt gcctgtatcg
    24841 ctaccgtaaa ataaacctac aactgccatt gctactacct atttgtgaga taattattta
    24901 gaattgtttc aattaactgc ccgcgtgaaa caccttgttc agacgcctgt tcctctaata
    24961 actttactaa attcgaatgc agttttaatt ctacccgttt taaaccggaa gatttatctc
    25021 gttttagttg gttacgttta ttgattcgaa gttgttgttc tctatcaaga ggatttgtac
    25081 gaggacgccc aacttttggt acagtcgcaa acagatctaa ggttatacaa tctgaatctt
    25141 gttttgccat tttgttttac tattgggctt tagctaatcc tcagttttaa tgagaatgat
    25201 aagctacttt taaagtgtga actatatcaa aagttcaatc atttgaaaag taaattacag
    25261 gcaaaacaag cggtgttttt aggtttaaaa tttgcaaaaa ccataaatta cacattatga
    25321 gttatgattt ttctgaagcg tgaaattagc ttataatgaa accgaataac gttatgaaaa
    25381 aggagatagt gtgtcgaata tccatttagc gattgccgct gattttacgc tggcagaaaa
    25441 attacttgaa gcattagcaa atcaagattt agggattgaa aatatttcag ccgttgagct
    25501 tgagccgttt ggtgaagagc agaatttacg ctttggggca aaagcagtcg cacaatatgc
    25561 gttagatgaa gtaaattggg cggaatttag ccatgttcta tttgccggca aaatggcaca
    25621 agcggaagtg ttggcagaag cggtgaaagc cggctgtgtg attttagatt tatacggcat
    25681 taccgcactc atcggcgatg taccggtagt tgtgccaagt gtaaatgatg aaaatgtcgc
    25741 aaatttgcgt gagcgaaata tcgttgcttt agccaatccg caaatttcac aactggcgtt
    25801 agccttaaag ccattgttga acgagccgtt aaaacaggtg tgggtaacct cacttttacc
    25861 gtctgcctat tttggcgatg aaaaagtcaa ggagcttgcc ggacaaactg cccgtttgtt
    25921 aaacggcatt ccgtttgatg aaaatgcgga acgcattgcc tttgatgttg tgccggctaa
    25981 tgtgcaagga gaagagaaaa gtctgccgtt ctcaaaagcc tttgaactgc aaattgcaaa
    26041 agttttacca aatttgaccg cttgtactac cttccacagc gtgcaagtgc cggtctttta
    26101 tggggtttcc caaatggtgt cggtgcagtc tgaatatcag ttagatgcta atgcgttaag
    26161 tgaagcttgg aaagccgaaa attggctgaa ttttaatgaa aattcagtga ttacagcggt
    26221 gaaaaatggc gaaaacgaag agcaaaatgc gttagaaatc agtcagttat tggcgaaatc
    26281 cgaacaggaa gtgcagttct ggacggtcgc cgatgaacag cgtttcagtc tggcattttt
    26341 agcggtgaaa ttactaaaat tagttttagc gtattaagtg cttgcaaaag tatttattcc
    26401 gtgataaaaa tcgtcaacgc ccgagcaacc gattgcttgg gcgttgtcat tttgtttaaa
    26461 caccgaaggt cttatgttag aaaaattatt tcagctcaaa gcaaaaggca gtaatgtaaa
    26521 aaccgaaatt atcgccggta ttactacctt tttcacaatg gtttatattg ttttcgtcaa
    26581 tccgtctatt ttaggcgtgg cgggaatgga cacccaagta gtgttcgtga ctacttgttt
    26641 aattgccgct tttggtacta tcgcaatggg gttattcagt aatttaccga ttgctcttgc
    26701 accggcaatg ggcttaaatg ccttttttgc attcgtagtg gtgcaaaaat taggttactc
    26761 gtggcaagtg ggtatggggg cgattttctt aggctctgtc ggcttattcc tattaactgt
    26821 attacaagtt cgttactggt ttatgtctgc gattccactt ggtttacgtg taggtattgg
    26881 tgccggtatc ggtttattca ttgccctaat cggttttaaa aatatgggct tggtggtgcc
    26941 aaatccggca acgcttgtgg cactaggtga tttgcacgac ccgaaagtgt taatggggat
    27001 tttaggcttt ttcatcattg ttgtattagc ggcgaaaggt attcactcag gcgtgttaat
    27061 ttcaattgtg attgttaccg ctcttgcctt agcctttgac ccggcggtga gctttaacgg
    27121 cataatgtct atgccaccaa gccttggggc agttgtgggg caggttgata ttgccggtgc
    27181 ttttgatgtt gccttactcg ggatgatttt ctcctttatg ttggtaaacc tgtttgactc
    27241 ttccggcacc ttaattgcgg tgactaccaa agcaggcttt gcggatgaac aagggcgttt
    27301 cccgaaaatg aaacaagctc tgctagtaga tagtaccgct gcaatggcag gctcttatat
    27361 gggaacttca gcgatttcta cctatattga aagtggctcc ggcgtttcag ttggcggtcg
    27421 taccggctta actgcggtgg tagttgggat cttattccta ttaaccattt tcttctcacc
    27481 acttgcaggg ttagtacctg cctatgcaac tgcgggggca ttggtatttg taggaatttt
    27541 aatggcatct agcttaattg aagtaaaatg ggacgattta actgaagcta cgccggcatt
    27601 tattactacc gcaatgatgc cgtttactta ctccatcact gaagggattg cattcggctt
    27661 tatcagctac tgcgtaatga aagcctttac agggcgttgg aaagaaatca acctttctgt
    27721 tttagtggtt tcacttctct ttattgctaa atttgtgtgg gtgggttaag ctctaccccc
    27781 ctctccctga tttttcttct aaacgaagaa aaatctatcc ctctcccaca aaggggagag
    27841 ggtatttgat tcattatcta tgtgtttcgt gtattccgag gtaaaacaat gtctaattca
    27901 gttcaaaaac ttctttttat catcaattct gctccttacg gcaatgaaac gtttttcagt
    27961 gcgttgcgtt tggcattaca aattcaagaa caacataaag ccaatacgga aattaaactt
    28021 ttcttaatgt cggatgcagt caccgcaggg ctggcaaagc aaaatccggc agagggttat
    28081 catattcagc aaatgctgga aattttaacc gcccaagggg caaacgtaaa attatgcaaa
    28141 acctgtacta atgctcgagg gattacagat ttgcctttag ccgatggggt agagattggc
    28201 acattaattg aactggcaga ttggacaatt caagcagata aggtactgaa tttttaatgc
    28261 aaaatattga tgttgtggtg attggtgccg gtgcggcagg gctgttttgt gctgcccaac
    28321 tggggcaagc tggcaaaaaa gtggtggtgt tagacagcgg taagaaagtc ggacgtaaaa
    28381 ttttaatgtc tggcggtggt ttttgcaatt ttacgaattt agacgtaagt gccggaaatt
    28441 accttagcca aaaccgccat tttgtgaaat ccgccctttc acgttatacc caatgggatt
    28501 ttatttcgct tgtcagccac tatggcatta gctatcacga aaaagagcta gggcagttgt
    28561 tttgtgatga aagctcgcaa caaattgtcg atttactaca agcagaatgc aacaaaggca
    28621 aggttgagat tctgttacgg caagcggtca tttctgtgga aaaagttgca aatttttttg
    28681 aaatttcgac cgcttgtggc aagttccaat ccgaacactt agtgattgca accggagggc
    28741 tttcaatgcc ggctctcggg gcaagccctt ttggctatca acttgccgag cagtttggta
    28801 ttcctgttgt gccaccacgt gcaagccttg tgccttttac ttggaaagag agcgataaat
    28861 attttgccga gctttccggc attgcactgc cgattactgt ttccgccaat ggcaaaagtt
    28921 ttagcaatca gatgttgttt acgcacagag gcttatccgg cccggcaatt ttgcagattt
    28981 ccaattattg ggaattgggg gaaacggtag agattgatct gctaccttcg cagtccatta
    29041 ccgatatatt gagcgaacta cgccaatctt cgccgaaatt acagctaaaa accgtattat
    29101 ctcgttattt acctaaaaaa ttggttgaag tttggctgga acagaaattg ctgaccgata
    29161 aagtgattgc cgatttgagt aaaaaagatc tgaccttatt agagcaattt atccaccatt
    29221 ggcatttctt gccaaacggc acggaaggct atcgtacagc ggaagtaacc aaaggcggtg
    29281 ttgataccga ctatatttca tctaaaacga tggaagcgaa aaatacagca gggctttatt
    29341 ttatcggcga agtgctggat gttaccggct ggcttggtgg ttataatttc caatgggcgt
    29401 ggtcatctgc ttttgcctgt gcagaaggga ttattgaaaa aagcaaataa ctaaaaaagc
    29461 aaataactaa aaaaccaaac aaaaaggcga acacaattgt tcgccttatt ttatgctgaa
    29521 ttatcttgca cggaaaataa tgcgtgcttt gcttaaatcg tatggagtca tttcaaccgt
    29581 tactttatca ccggttaaaa tacgaatgta gtttttacgc attttgcctg aaatatgtgc
    29641 ggtaacaata tgaccgtttt ctaattccac acggaacatt gtatttggta aggtttctaa
    29701 aatcgtacct tgcatctcaa tgcaatcttc tttagccatt tattcctctt taaagtttta
    29761 atttttatat gatgccattc ggcgaaaaac ggcggatatt atacgcttat tcgctcaaat
    29821 tacaatcgtt tatccatttg agtgtaaact atttacgctt aatccaacgg cgacgtgagt
    29881 gaaaacgctg ggtttgggtt tttacttgac tcataagtgg ttttgggctt atctgtacat
    29941 gatgaatttt acgacgaaaa tagtagttaa tgctacttgc caacaatata cctgtgagta
    30001 gcaaaataat tatttcccca taaagttgat gaaattgttg ctctactcgt gctttagtag
    30061 tttgcccata ttctgcatca aacgtgacgc gtaaaaagcc aaccaacgcc tgttgagaaa
    30121 atattggctc aacaatttgc tgagttttgg cagattgctc tgaatcgagc aatactttta
    30181 aatctttcgc attttggctt tgagccagta gcacgccatt tggtgaatag atattggcat
    30241 caataataaa atcttctttg gcaaaactat ccaacgcatc aaccagctca tcggttttgg
    30301 catttttaac taacaaaaac gaaaaaatat ttgcttgctg gcgaaccaat aggtgtgaaa
    30361 ggtttgatac ttgattaatg ctggccaatt gtgagcctag cttaaattgg tttacgccca
    30421 ttaaaataac cgccacgatc ccacagcaga gtagcgtaat ccctgccagc aaaagcgttt
    30481 tcgttatttt ttcacgacta atgtacatcg aaattccctc aaaatgatgc gtgattgtag
    30541 cacgcttttc tgttagatta gtgcagtaaa tttaaacaac ctaaaataag acaatgacaa
    30601 acacaatttt tatctattca aaaaccttaa acgagcgtga aattgaacag ttttcacaac
    30661 aaacggcagc aattttgctg aaacaagcgg tctatttaga ctacaaaatt gcattttttt
    30721 ccacaaattt aaccgcttgc gagctgcgtg aaacggcaca gaaaatcaat gcggatatta
    30781 gcgatctcac tattattcca accttaaacc aaggcggttt gctattaatg gatatggatt
    30841 ccaccgctat taaaattgaa tgtattgatg atattgccaa acttgccggc accggcgagg
    30901 tggtgtccgc cattactgcc agtgcaatgc ggggcgagct ggatttcgag caaagtttac
    30961 gcaagcgagt cggcacgttg gaaaatgcat cggaaagcat tttgcaaaaa gtgcgggaaa
    31021 atctaccgct tatggacggc tttgagcaga tggttgctat tcttaaggaa cacggctgga
    31081 aattagcgat tgcgtccggt ggatttgatt acttcgccga ttacttaaaa caaaaatacg
    31141 ggttgaattt tgcggtctct aaccaactgg aaattattga cggtaaatta accggcaagg
    31201 tgttaggcaa agtagtggat gctcaacata aagccgatac cttacagaat ttagcgacaa
    31261 cctttaatat tccaccaaat caatgggtgg cagtcggcga tggggcaaat gacttaccaa
    31321 tgttaaaaac cgccagttta ggcgttgctt tgcacgctaa accaaaagtg caagcacaag
    31381 ctgattttgt ggtaaacttc ggggacttaa cggcattatg tttattactt aatgccaatc
    31441 atttatttca acattaattg agaggaacaa caatgccatc atttgatatt gtatctgaaa
    31501 tcacgatgca cgaagtgcgt aatgcggtag aaaatgccaa tcgtgtatta agcacccgct
    31561 acgatttccg tggggtggaa gccgttattg agttaaatga aaaaaatgaa agcattaagc
    31621 tcacgaccga atcggatttc caattagagc agttaattga gattttaatc ggctcttgtg
    31681 taaaacgtgg gatcgagcat agttcattag atatccctac agaaagtgag catcacggta
    31741 aactctattc caaagaaatt aagctcaagc aagggattga gtcagatatg gcgaagaaaa
    31801 ttaccaagct gattaaggat tctaaaatca aggttcaagc ccaaattcaa ggcgagcaag
    31861 tgcgtgtaac gggcaaatct cgtgatgatt tacaagccgc aattcagcta gtgaaagggg
    31921 cagatttagg gcagccattc caatttaata atttccgtga ttagcaattc ctgcaattaa
    31981 tgatgacaag tggaaaaatt cagcaaaatt tgaccgcttg cattaataat tcaacataaa
    32041 aggaagagat gatgagcgag caaacagaaa agaaaggctg gtttaaaaaa gcccttgaga
    32101 aatatgatgc cttttgcgat gagctagggg taaatcaagg tgcttgccga ggttgtgtcc
    32161 ctgtggtgaa gtttgaccct gaaccggaaa aagagcagcc agaaaaatca gaaaataaaa
    32221 catagaaaaa atgcacaatg gtaagataca ttgtgcattt tttataggat ttttaattgg
    32281 cgtgatgatg ggcaaaatat tgcttaactc cgccatcttt cttgcaagga ttctgaatat
    32341 cagtagagta actaccgtta aaacaaagag cagtagcatt cgatggttta atcttttcct
    32401 gtttagttag ggctggcggt tgagtattgg tttcactaat atagatcgtt ttaggttgag
    32461 aatagtctat atttttgtcg ccatttacga cttgaacggg ggtgttcgag ctgcaagcta
    32521 caaccgatgc tgaagccaat gtaagtataa tgatatggtg ttttttcatg ggtaatttcc
    32581 gtttttatat ttttaattga gagaatgtta aaaagggctg atttctcaac ccttaaagtt
    32641 atgccttaag catttttatt aaaagtttgt cctaactgaa tttcatcatt taatacagga
    32701 attaactgct ctagttgatc tttttcaaat tcgctgagat tgccgatagg tagaactttt
    32761 tccacaccat ttgtacctaa acgaatcggg taagcaaaga atgccggaga ggtttcgcca
    32821 ttggcattat ctacataagc ataacgaatg acatcttccc cgattaaggc tctcactaaa
    32881 ccaagtgcaa attctgctcc tgcttgagcc atagataagg ttgctgagcc accacctgct
    32941 tttgcctcaa ccacttcagt accggcgttt tggatacgat gagttaattg ctcgatttgt
    33001 tcttgagtga actcaagttt taagccattt actgttgctt gtgaaagcag tggaagaata
    33061 gttgtgccgg aatgtccgcc aatcacaggc actcttacat atttcacatt tacgtctttc
    33121 gcttcagcca caaaggtatt cgctcgaata acatctaatg ttgtaacacc gaaaagttta
    33181 tttttgtcat acacaccggc ttttttcaat acttctgccg caatcggaat aatggtgttt
    33241 accgggttag taataattgc aatgcaagct ttagggcaaa ctttcgctgc tttttcgact
    33301 aagttatgca cgatagtggc attcgtattg aataaatcgg cacgtgtcat ccccggctta
    33361 cgggcaacac cagcagaaat aacgaccaca tcggcatctt ttagtgcctc agtcggatct
    33421 tcacctgcaa aaccggttac ttttacatca gttggaatat ggcttaaatc cactgcaatt
    33481 cctggagtaa caggggaaat atcgtaaaga gataattcag atttagccgg taaattgagt
    33541 tttaataata aggcgagtga ttgaccgatt ccacctgcag cacctaaaag ggcaactttt
    33601 ttactttgac acataaaatt tctcctaaat gttatggaag tttagaccaa tttagtctaa
    33661 gccaattttt tgggcgattc aaacggcaaa tctcattttt gagacataga gcaaattttt
    33721 agctgatttt tatgggtttt attgatttat ttgcataaat aagcaagaat tatgaatatt
    33781 tttaagtttt tgtgaataag agtgtgaaag tggacaagat agatagttta tcagaagcgt
    33841 ttaaatcgct gttaaaggaa gaaaaattcg gctcgcaaag tgaaattgtt gccgcactac
    33901 aagagatggg ctttgataat atcaaccaat ccaaagtttc tcgaatgtta tcaaaatttg
    33961 gtgcagtcag aacccgtaat cctaaaatgg aaatggtgta tcagctacca gtcgaattaa
    34021 gtgtaccgac tacctccagc ccacttaaaa atttggtggt agatattgat cataatgatg
    34081 cgttaattgt ggtcaaaacc agccccggtg cggctcaact gattgcacgt ttgctcgatt
    34141 caatgggtaa agccgaaggt attttaggca ctattgctgg cgatgatacg atttttataa
    34201 cgccggtacg caatgtgcaa attgaaaaat tggtgaagaa tgtgacacag ttatttgaaa
    34261 catcattata gaataagtaa aggaggactt aatgttctcc ttatttttta ggagattatt
    34321 atgcacattt ttataacagg tggtacgggt tttattgggc gtgaattaat ccagcaatta
    34381 aaatctgaaa atcaccactt tacacttctt actagagata cagaagcgaa aagtgatgat
    34441 ttacagatta attattgcta ttcacttgat gaacttgttg atttaaatga ttttgatgca
    34501 gtaattaacc ttgccggtga gccgattttt gataaacgtt ggacagacga acaaaaacag
    34561 aaattgattg aaagccgggt taacctaacg aataagctca gtcaattaat gaatgcaagc
    34621 tctaaccctc cgcatacttt tctctccggt tcggcaatcg ggatttatgg cgatttgcct
    34681 ccttctgcaa atttttatac agaatcgacc gcttgttatc aagattgctt taccaaccgg
    34741 ctttgccaac agtgggaagc cgctgcacta aaagccgcaa gtgataaaac ccgagtgtgt
    34801 ttaattcgta ccggcacggt attttcgccc gaaggcggag cattaaagaa aattttaccg
    34861 ctttatcgat gcggattagg cggaaaactt ggttcaggca aacaatattg ggcgtggatc
    34921 agccgccggg atcacgtaca agcggtcatt tttctgctca aaaatgcaaa ttgttcgggt
    34981 gcttataatt ttgttgcacc aaatccggtg agaaatgaag aatttaatcg tattttagcg
    35041 aatgctgtta atcgcccggc attctttact gtgcctgaat ttgccttgaa attaggctta
    35101 ggcgaacgag cttgtttagt cttagataat caacagctca ttccggaaaa actactcgca
    35161 gccagttttg tattccaaga tccgatttta accgagaacg ttttcttaaa cccataattt
    35221 aggctataat gctgtataaa agcacagatt aaaaggtgat tatggatttc tcattattat
    35281 tagacggttt aaatgacaag cagagggagg cggttgctgc cccgattggt aattatttag
    35341 tgttagccgg ggcgggttcg ggcaaaactc gggttttaac ccatcgcatt gcgtggctga
    35401 ttggggtgga aaatgtgccg gaatccaata ttctggctgt tacctttacc aataaagcgg
    35461 cggcggaaat gcgacatcgg attgagtaca ctctttccca atcgggcgat aatcgattgt
    35521 tcggaatgtg ggttggtact ttccacagca ttgccaaccg cttacttcgt tcccactatt
    35581 tagatgcgga tttaccgcaa gatttccaaa ttatggatac cgaagatcag caacgtttac
    35641 tcaaacgttt actgaaactg cataatattg atgagaaaca ttttccgcca aaacacgttg
    35701 cgtggtatat caacgcccaa aaagataaag gcaaacgggc aaaagatatt gatcactata
    35761 acgatccgaa tgaaaaaaaa ttggtggaga tttaccaaat ctatcaagat gcctgcgacc
    35821 gagccggttt gttagatttt gccgagctgt tgattcgggc ttatgaacta ttcaaaacca
    35881 aatcaaccat tttgcaacgt tatcaacaac gttttcagca aattttgatt gatgagtttc
    35941 aagacaccaa caatattcag tacgacttaa ttcgtttgct tgccggcgat gtcggcaaag
    36001 tgatgattgt cggcgatgat gatcagtcta tttatggttg gcgtggggca caggttgaga
    36061 atatccaacg tttcttaaat gattatgaca acgctcaaac cattcgctta gagcaaaatt
    36121 accgctctac cggcaacatt ttaagctgtg ccaatgaatt aattgccaat aacgataacc
    36181 gcttaggcaa aaatttatgg acagatagcg gtgatggcga gcctgtggat atttactgtg
    36241 ccttcaacga acttgatgaa gctcgctttg ttgcctcgca aatcaagcaa tggaaagaag
    36301 acgagggtga tttggcggaa tgtgcggtgt tgtatcgcag caacagccaa tctcgtgtga
    36361 ttgaggaagc tttaattcaa gcgaatattc cttatcgcat ttacggtgga atgcgattct
    36421 ttgaacgcca agaaattaaa gatgctctgg cttatttacg cttaatcgcc aatcgtcaag
    36481 acgatgcggc gtttgaacgg gtgatcaaca cgccaaccag aggcattggc gatcgtacct
    36541 tagacacact ccgtcaaatt acccgtggtc gccaaattac gctgtggcaa gcaattcaag
    36601 tggcggtgca agaagaacaa ctttcagggc gtgccacttc ttccttattg cgttttgtag
    36661 agctgattaa tgctcttgat caagaaaccg agcagatgtc gcttgccgaa caaaccgatt
    36721 ttgtgattaa aaaatcgggt ttatatgaaa tgtataagca agaaaaaggc gaaaagggcg
    36781 aagttcggat tgaaaactta gaagagttag ttaccgcaac taagcagttt gtgaaacctg
    36841 acgaagcgga agagctgacc gatcttaccg catttttaac ccacgcctca cttgaggctg
    36901 gagaagccca agcctcgcaa cacgaagatt atgtcgaact gatgacgcta cattccgcca
    36961 aaggattgga gtttccccgt gtgtttattg tgggcgtgga agaagggatt ttcccaagcg
    37021 gaatgagctt tgatgaaggc aggttgcaag aagaacgccg tttggcttat gtcggcataa
    37081 cccgagctaa gaaaaaactg acgattagct atgccgaatc aagacggctt tatggtaaag
    37141 aagaacgcca cgttccgtct cgctttattg ctgaattacc tgaagagcat attcgagaag
    37201 tgagattgag aggctcaatt aaccgagcgg caagttttaa ccaagctaat tcatttgcaa
    37261 aaaatccgac aaaaacgacc gcttcctttt taaacgatga tacttggaaa atggggcaga
    37321 aagtgaacca cgctaaattt ggacaaggca cgattattaa tgtggagggc tcaggtgaag
    37381 ccacccgttt gcaagttgcc tttgtcggca acggcattaa atggctgatt gccaaaatgg
    37441 caaatttaga gaggatttag gcgaataaaa agttttttgc aggaatatag atggcgagat
    37501 atattgcccc ttaaccttaa actaagggta aataaaatta aataatgcaa gctagatata
    37561 atgtaaagta tcagaaataa gatattaatt taagataaag aatagatggc tggggtacta
    37621 ggattcgaac ctagggatgc cgagatcaaa acccggtgcc ttaccgcttg gcgatacccc
    37681 aaaagaaaaa actaacttac gttagcttat atagatttga atgtttgaaa ttaagtggct
    37741 ggggtactag gattcgaacc tagggatgcc gagatcaaaa cccggtgcct taccgcttgg
    37801 cgatacccca acactaattt ttgttaatcg ataaatggtg cgggacgagg gacttgaacc
    37861 cacacacctc gcggcgccag aacctaaatc tggtgcgtct accaatttcg ccagtcccgc
    37921 aatggtggct acagcgagat tcgaacttgc gaccccaaca ttatgagtgt tgtgctctaa
    37981 ccagctgagc tatgtagcca tttgcgttca ccatatcggt caacggagtg cattatgctg
    38041 attttagggc tttccgtcaa atactttttt taaaaaattt gaatttttga ttcgcttgta
    38101 tagttattcg tcgttttggc ttaaatctag cattttttgt ttataaaata atagcttata
    38161 ttctgctatt tcaccgtttg catttctaat tttaattgag ccagtacagg ctcaacatcg
    38221 gggaattgcc cttcccacaa agaaaacgca aacgctgcct gtccaaccaa cattcctaat
    38281 ccgtcttggc acgctgttgc tccacaacgc cttgcataat tgagaaaagg agtttgcata
    38341 ttgggggcat attgcatatc gtaaatattc gccgatgcta taacagattc aggcaattca
    38401 acatatttgc cttgcagacc gagagaggtg gcattgacga ttaaattaaa cagttggttt
    38461 gccaaatcgc ttaaacaagc ggtctgaatt ttgccaaatt ttgcaaattt ttcggctaaa
    38521 acgaccgctt tctcctgcgt gcggttatat agagtaatct ctaaccccgc tttaagtaac
    38581 ggaagtaata cgcctttggt tgctccacct gctccaagaa ttaaggtttt atgccctttt
    38641 tgtaaccaac ctagccgttc caaatcagaa actaaaccgg ccccgtcggt attatcggca
    38701 tataaccgtc catcttctaa gcgtttaagc gtattacacg cctgtgccaa caaagcggtt
    38761 tcgctaaatt catctgccaa tttaaaggct ctttctttaa aaggggcggt gatgttgcaa
    38821 ccttttgctc cagaagcgaa aaaatcggct aattgttgct caaaagccgt ttcatctcct
    38881 aagttagcga tatattcaat gttgcgttgg gtttgtaaag caaagagttg atgaatacgg
    38941 ggggatttac tttgagcaat cgggttgccc cacacggcat atcggttcat ttcggcttat
    39001 ccttgtctaa aaatctgttg gctgaaaata tctcgaattt cggaagggtt ttctctacct
    39061 agcgtgtctg cgtgtaatac aggaaaatct tgaccaaact gatcgatgac ttcttttgca
    39121 ttgcggcaag gtggttctcc gctcaaattg gcactggtag aggtcaacgc aacgccgctt
    39181 gcctcacaca actgaaccac cgccggcaca ttacataaac gtacggcaat agaatcaaat
    39241 ttgccggtga ggtaacttgg cacagtattt ttaaccggta cgatccaagt aattgcctgc
    39301 tcgccaatat ggcttaggcg ttgccaagcc tgttccgtca ttcgagcttc atcaatatag
    39361 ggaagaagat actttaaatc agaagccagt aaaattagcc ctttttcctc agggcgttgt
    39421 tttaatacga gtaatttcct taccgctttt tcactttgtg gattgcagcc taagccaaaa
    39481 accgcttcgg ttgggtaagc tacaacttct tcttgcttta attgattaac tatttctaaa
    39541 aaattattca ttcggtttta attctgtttg gtgctggcaa cttttgttag cacaaatggt
    39601 gaattgcttg cccttaattt ttttgattgt agcgagttca caaccacatt tttcacacaa
    39661 gtggttaatc ggtcgagttg ctaatgtaaa tttgcaatta gggaagccta tacaaccata
    39721 aaatattttg cctgaacgcc cttttctagc aatcagttta tgttgcttgc attcagggca
    39781 atcaaactct tcttcaacct cagcttcttc gtgtacgatg aagtggcatt cagggtaatg
    39841 gctacagccg ataaaaatac cataattgcc ttgttttaat tggaggtttc cgccacattc
    39901 agggcaaagt tcatctaatt gcttaataat atgaccggct tgatgtaatg gcttaatata
    39961 atcacattca gggtaagctg aacaacccaa aaataaccct tttttgccct gcttaatttg
    40021 caacggcgag ccacattgtg ggcaagtttc ggtctgtttg gttgatttga aaagtaccat
    40081 attgatttgc taaataagcg taaattcaat cacaaaaaac gcattgtcat tcggataaat
    40141 ctcccgaata acttgtttca attcggctaa gctcatattt tcttgtttag cgtgttgctc
    40201 gtttaattca tcaaacacta taggtgttac cgatagcact ttaatattgg cgaaaaatct
    40261 atcggtttca ttagtaaaaa ccgctaattc ttggtttggt tgaaaataag attctgactt
    40321 gtctcgaatc gtaattgttt ttttaccgct taaaatatcg gcttcaaatc ggctgaaaaa
    40381 ggtaattttc tctctattca tattcatcgc tactgtaatc cagagccatt aaatgactaa
    40441 aatgatcgtt ataaaaacca cggctaacca taaatcgcca cattttctgc tttgctttca
    40501 gatcccatac aagcggtcgt tttttctcaa aaatttgctc agctaattca aaccaatcca
    40561 cttcggcgtt ttctaattct tggttaatta accaatcttt taccccttta agttttagct
    40621 cttgctttaa acggcgaggc ccaatgcctt gcattgaacg ataacggata aaagtggtac
    40681 aaaagcgttc atcactttgc cactgattcg cttgagcttt ttcaatcgct gcatcaatct
    40741 ccgtgagttc atactctttt tgctttagtt tttgccgaag ctcttgctcg ctgtaatcac
    40801 gctttgaaag taaatatagc agataattaa ccgctgtgta tttatttgtt ttagtagtag
    40861 atgttgtcat ttatcggtta taaataaaaa tgcgattttc acgttgagcg aaaaccgcat
    40921 aaatttaatt agagttcttc ttcactaaat tcatcatctg cattgtctgc attttcagaa
    40981 tctggagtag ccgtaaaagt tgggtttgaa atgagtagat ttcgaatatc ttgctcaatt
    41041 ttactcgcca cttcagggtg ttcttttaac catttgatgg cattattttt accctgaccg
    41101 attttctccc cttcataaga gaaccaagcc cctgctttat taatgaagcc gtgagattcc
    41161 gctaaaatga gtaattcatt catacgggca atgccctcac cgtacataat atcaaattgg
    41221 acttcacgga acggtggagc aaccttgttt ttcacaattt tcacttttgt ttcgctaccg
    41281 ataacctcat caccgtcttt tactacgcct gaacgacgaa tatctaaacg tactgaagca
    41341 tagaatttaa gggcattacc accagttgtg gtttcagggt taccgaacat tactccaatt
    41401 ttcatacgaa tttggttaat gaaaatcacc aagcagttgg tcgctttgat atttgcggtt
    41461 aatttacgca atgcttgtga cattaaacga gcttgtaagc ccatatggga atcacccata
    41521 tcgccttcaa tctctgcttt tggtgtaagt gccgcaacag agtccacaat aattacatca
    41581 accgcaccgg aacgaactaa cgcatcacaa atttctaatg cttgttcgcc attatccggt
    41641 tgtgaaatta ataatccatc tgtatctacc cctaacttac gggcgtaaat aggatcaagt
    41701 gcgtgttcgg catcaataaa ggcacaagtt ttaccatttt tttgggcttg agccaccaca
    41761 gataaagtta atgtagtttt acctgaagac tccggtccat aaatttccac aatacgaccc
    41821 attggtaaac caccaatgcc taatgctgag tctaaaccaa gagaaccggt tgaaactgct
    41881 tcaatatcaa gggcttgagt atcgcctaac ttcataattg agcctttgcc aaattgcttt
    41941 tcaatttgag ctaatgcggc tgccaacgct ttttcttttt gttccggatc aatctgttta
    42001 accggagtgt tcttttgact ttttttctct gccatattct atcctttgta aacttttatc
    42061 taaaagcaac cgcttgttgc tgcaa
//
LOCUS       DANLXB010000002        34753 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLXB010000002 DANLXB010000000
VERSION     DANLXB010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(206..1081)
                     /gene="ubiA"
                     /locus_tag="PXD41_000051"
     CDS             complement(206..1081)
                     /gene="ubiA"
                     /locus_tag="PXD41_000051"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL6287624.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1074..1835)
                     /locus_tag="PXD41_000052"
     CDS             complement(1074..1835)
                     /locus_tag="PXD41_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL6287625.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1902..3269)
                     /gene="purB"
                     /locus_tag="PXD41_000053"
     CDS             complement(1902..3269)
                     /gene="purB"
                     /locus_tag="PXD41_000053"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL6287626.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3303..3932)
                     /gene="hflD"
                     /locus_tag="PXD41_000054"
     CDS             complement(3303..3932)
                     /gene="hflD"
                     /locus_tag="PXD41_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL6287627.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4064..5728)
                     /gene="cydC"
                     /locus_tag="PXD41_000055"
     CDS             complement(4064..5728)
                     /gene="cydC"
                     /locus_tag="PXD41_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL6287628.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5728..7494)
                     /gene="cydD"
                     /locus_tag="PXD41_000056"
     CDS             complement(5728..7494)
                     /gene="cydD"
                     /locus_tag="PXD41_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL6287629.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7609..11706)
                     /locus_tag="PXD41_000057"
     CDS             complement(7609..11706)
                     /locus_tag="PXD41_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL6287630.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11787..13622)
                     /locus_tag="PXD41_000058"
     CDS             complement(11787..13622)
                     /locus_tag="PXD41_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL6287631.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     SHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13634..14479)
                     /locus_tag="PXD41_000059"
     CDS             complement(13634..14479)
                     /locus_tag="PXD41_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL6287632.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14480..15643)
                     /locus_tag="PXD41_000060"
     CDS             complement(14480..15643)
                     /locus_tag="PXD41_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6287633.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
     gene            15811..16494
                     /locus_tag="PXD41_000061"
     CDS             15811..16494
                     /locus_tag="PXD41_000061"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL6287634.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(16631..17188)
                     /gene="frr"
                     /locus_tag="PXD41_000062"
     CDS             complement(16631..17188)
                     /gene="frr"
                     /locus_tag="PXD41_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL6287635.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(17240..17956)
                     /gene="pyrH"
                     /locus_tag="PXD41_000063"
     CDS             complement(17240..17956)
                     /gene="pyrH"
                     /locus_tag="PXD41_000063"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL6287636.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            18048..19610
                     /locus_tag="PXD41_000064"
     CDS             18048..19610
                     /locus_tag="PXD41_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6287637.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(19674..20525)
                     /gene="tsf"
                     /locus_tag="PXD41_000065"
     CDS             complement(19674..20525)
                     /gene="tsf"
                     /locus_tag="PXD41_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL6287638.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(20621..21340)
                     /gene="rpsB"
                     /locus_tag="PXD41_000066"
     CDS             complement(20621..21340)
                     /gene="rpsB"
                     /locus_tag="PXD41_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL6287639.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            21685..22713
                     /locus_tag="PXD41_000067"
     CDS             21685..22713
                     /locus_tag="PXD41_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6287640.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            22836..24482
                     /locus_tag="PXD41_000068"
     CDS             22836..24482
                     /locus_tag="PXD41_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6287641.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            24492..25502
                     /locus_tag="PXD41_000069"
     CDS             24492..25502
                     /locus_tag="PXD41_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6287642.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            25512..26138
                     /locus_tag="PXD41_000070"
     CDS             25512..26138
                     /locus_tag="PXD41_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL6287643.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(26200..27690)
                     /locus_tag="PXD41_000071"
     CDS             complement(26200..27690)
                     /locus_tag="PXD41_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL6287644.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(27749..28984)
                     /gene="rhlB"
                     /locus_tag="PXD41_000072"
     CDS             complement(27749..28984)
                     /gene="rhlB"
                     /locus_tag="PXD41_000072"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL6287645.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(29072..29794)
                     /gene="recO"
                     /locus_tag="PXD41_000073"
     CDS             complement(29072..29794)
                     /gene="recO"
                     /locus_tag="PXD41_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL6287646.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(30024..30941)
                     /gene="era"
                     /locus_tag="PXD41_000074"
     CDS             complement(30024..30941)
                     /gene="era"
                     /locus_tag="PXD41_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL6287647.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(31044..31718)
                     /gene="rnc"
                     /locus_tag="PXD41_000075"
     CDS             complement(31044..31718)
                     /gene="rnc"
                     /locus_tag="PXD41_000075"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL6287648.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(31764..32723)
                     /gene="lepB"
                     /locus_tag="PXD41_000076"
     CDS             complement(31764..32723)
                     /gene="lepB"
                     /locus_tag="PXD41_000076"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL6287649.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(32810..34603)
                     /gene="lepA"
                     /locus_tag="PXD41_000077"
     CDS             complement(32810..34603)
                     /gene="lepA"
                     /locus_tag="PXD41_000077"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL6287650.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
BASE COUNT         9954 a         7587 c         6445 g        10767 t
ORIGIN      
        1 tggcattgta atgtcccttt tttgaatgtc tactacaaaa tgggatattt tacaaaccga
       61 ttgactaatg aagcaagaat ataattaact acaactggat atattttgca aatttcccga
      121 taaatttcac cgcttgtaga taaaaaccgt agataaaaac catagataaa aaataggagc
      181 taaacatttt tagcccctac cgtcatcaga aataaatccc gactaaaatc gccacgaaca
      241 cacctaagcc gaaatagtgg ttatttagaa acgctttaaa gcattcgcta cgttctcttt
      301 ttttggtcag ccaacattgg tagataaaca gcgtggcact taaggctaat acgacaaaat
      361 agccgatgtg ataatctttt accacgccca ataaccccaa taaaatcaag gtgataaact
      421 gtaataacgc aataatttta ttatcgtatt gagcgaataa aattgcagtg gatttaactc
      481 caattcgtaa atcatcgtca cgatcaacca ttgcatattg ggtgtcgtag gcgactgtcc
      541 acgctagatt ggcaaaaaac agcagccagc attcaagtgg aagagtttcc gttaccgcac
      601 caaatgccat cggaatcgac caaccgaatg ccattccaag cactacttgt ggcaagtggg
      661 taaaacgctt cataaaggga taaatcaccg ccagaaaaac tgccacaaag gaaagcagaa
      721 acgcatagcg gtttagcatt aaatcgagca gaaaagcgaa caacagcaag atggcaaaaa
      781 tgacttttgc ctcagtggtg gtcactctgc cggtagctaa tgggcgttga gaggtgcgtt
      841 taacgtgtcc gtcaatttct ctatcggcat aatcattaat cacacaacct gccgcacgca
      901 taacgattac cccaagggta aaaatggcta aaatcgcaac aggcggcatt ccctctgcgg
      961 caataaataa cgcccatagt gtggggtgta ataataataa cgtgccgatg ggtttatcga
     1021 aacgcattaa ctgggcgtag gcaatccatt tttgtttaga aaaaagagtt tcgttattca
     1081 ttacaaattt tgacgataac gtccgattgg cttaaatgag tctgtaattc taacggtaaa
     1141 tcttgatctg taaacaaata atttacttct ttaacatttc ctaaacgtgc aatagctgta
     1201 cgggtaaact ttgaatgatc ggtcactaaa accacttgtc gggaacattc cattaatgca
     1261 cgctttacct gcacttcgtg gtaatcgtaa tcgagcatag agccgtccat atccaccgca
     1321 ctaatgccta aaatcccaaa gtccaaacgg aattggttaa taaagcgaac cgtttcttct
     1381 ccgattagcc cgccatcact tcttagccct ccgcctgcta ccgtaatttg gcaatcttca
     1441 ttttgcatca gaatatgagc cgcatttaaa ttattggtaa ctacttttaa atttttatgc
     1501 gaaagtaagg ctaatgccac tgcttctgaa gtcgtgccaa tatctaaaaa taatgatgct
     1561 ccatttggaa tcagttttgc cacctgttgg gcaatcgcat ttttctcgtg tgagaaaaat
     1621 tgcttgcggt gggtgtaatc actattctcc gtattggaag gagcggctgc cccaccgtga
     1681 tgacggcgaa tcagattatt ttctgccatt tcattcagat cacggcgaat ggtttgcgga
     1741 ctcacattca attcagccac taattgctcg gtactcacat agccaagctg attaaccagc
     1801 tcaatgatct ttttgtgtct gtttgcctgt ttcatatttc ctcttttgca aataatttgc
     1861 agaaaaagac cgcttgcaag cggtcttttt tcagttaaat tttacaattt atcaacaagt
     1921 tcaaccgcat agccgatata gcttgccggt gtcatctctt tcaaacgatt tttttcattt
     1981 tccggaattt ccaacttatc gataaactca cgcattgcgg tttcatcaac ccgtttgcct
     2041 cgagtcagct ctttaagttt ttcatacggt ttttcaatgc cataacgacg cataacagtt
     2101 tgaattggct ctgccaatac ttcccagttt tggttgagtt catcacgcaa gtgttgttca
     2161 ttcacttcta atttgctaat accttttaag gtggacgcat aagcaattaa cgcataacct
     2221 aaacctacac ctaaattacg caacacggtg gagtcagtta agtcacgctg ccagcgagaa
     2281 atcggcaatt tttgccccaa atgagccatt accgcatttg ccaagccaag attgccttcg
     2341 gaattttcaa aatcaatcgg gttcacttta tgtggcattg tgctagagcc gatttcaccg
     2401 gcaatagtgc gttgtttgaa gtgatttaag gcaatgtagc cccacatatc acgatcaaaa
     2461 tcaattaaaa tcgtattaaa acgagccacg caatcaaaga actccgcaat ataatcgtgc
     2521 ggttcaattt gggtggtgta tgggttccac gtcacaccta acgattccac aaattcttgg
     2581 ctgaaagtgt gccaatcaat ctccggatat gctgataaat gtgcgttata gttgcccact
     2641 gctccattga ttttagcgag aatttctaaa ttttctaact gtttatattg gcgttgtaaa
     2701 cgatatgcca catttgccat ctctttaccc attgtggtcg ggcttgccgg ctgaccgtgt
     2761 gtgcgagaaa gcaacggaat atgttggtaa catttcgcca gctctgctac agcatcaatc
     2821 acttttttcc attcaggtaa taatacttct tcacgagcgg ttttaagcat taaagcgtgc
     2881 gaagtattat tgatatcttc agaagtacaa gcaaaatgaa taaattcatt caccgcttgt
     2941 aattcaggca acgcttcaca tttctctttt aggaaatact ccaccgcttt tacatcgtgg
     3001 ttggtggtac gttcaatcgt tttaatccga ttggcatctt ctaacgaaaa atcagccaca
     3061 atttggttta ggtaatcgtt tgctttttca gaaaacactg gaacttcatt aatttgtgta
     3121 tgcgatgcca atttttgtaa ccagcgaact tccaccgtca cacggaattt taataagcca
     3181 aattcactaa aaatcggacg aaggctcgca actttgtctt gataacgtcc atcaatcggg
     3241 gataacgcag ttaaagcggt aagttccatt gttttatatt ctccaaatag gtaaatgttc
     3301 ggttagattt gacgataaaa tttctgtgct tggttaaaaa ttttcttgcg tgaaaataaa
     3361 aattgccaac ggcttccgcc gacttgctgc cacaaaatac cggctcgaat accggctagt
     3421 agcgaggctc gaattttatt ctgtatatcc gggcgaacca agtaatcttg cattcccatc
     3481 acgtgaattt tcgtacctaa cgggctgata atatcgctat aaatagcggc taaattggca
     3541 atcatttgat ctgccatcac attatcttca tacagggcta actggcgttc cacttgctgt
     3601 aaacgctggg ctaactgttg ttttgcttca gggtttttat tgagtttttg gctaagggcg
     3661 agcaggctta tccaataacg tccgacttcg gtatctaatt tgccgttacc gccgccagtt
     3721 tgagctaatg cggtttctaa gcccattttt aaatgggaaa gatcatcgcc aaatacactt
     3781 aacgttgatt ccggctgagt gattaacagg ctttctaaag cacacttaaa agcctctctg
     3841 tctgccatgc ctttatgtgc aaattgttgc actaacgtcg ccgcttggca aacgccggca
     3901 taagcaaggg taatatcgtg gtaatccgcc atctctgtaa aattcaatat gataaaacat
     3961 tagtgggaat atagcatttt ttcagcttct tttgaatggc aaaaggcatt tattctattg
     4021 aaaaataaat gccttttcat taatacgcaa tttgctgcaa aaactatcct accaatcgcc
     4081 cattatctat tcgataaacc acatcaaatt tatccagtcc gctttggcgg tgagtgatca
     4141 taattaaggt gcgatcacag cagtgagtca aaattaggtt taaaatctgc tgttcggttt
     4201 ctctgtccag tccttctgtt ggctcatcaa gtaagactaa ttcagcagaa ctcaggagca
     4261 aacgggcaag ccctaaacgg cgttgttcgc caccagaaag cggtctgccg ccctcgccta
     4321 accataaatt taagccgtct gtttcaagca aatgccctaa gcctactttt cttactgctt
     4381 cttgcatttg ttcgtctgta gcttgagcat tccccattaa taaattatct tttagggttt
     4441 ggctaaaaat atgcactcgt tggcttaagg taactaattt tgagcgtaac atcggctctg
     4501 aatattcgtc aattttacaa ttattcagcc aaatttgacc gcttgtaggg tcgtagttgc
     4561 ggtttaacag ttggaatatg gtcgattttc cgctacccgt tttacctaag attgccactt
     4621 tctgcccttt taatacctta aaggaaagat tatttagtac gttttgctcg ccgtaataag
     4681 caaagctcac gttttcacag cgtacaagcg gttgattttg gctcaaattt tgccattctg
     4741 ccttgctacc aaatgttaca ttaggctgtt gttcggtaat ttcactaatc cgctcggcgg
     4801 cggtaatcac ttgccctaaa tgcaaaaagg cgataccaat cggggaaaga atctccgccg
     4861 atgccattac acagaaaatc actaacgcaa ttaaggcttc agggtatttt gcagtgggca
     4921 cattaatcga agttgaaacc aaatagatca ccacacaagt caaaatgccg ttggataaca
     4981 ttatcaagct atttgataag ccggacagtc ggctttcttt gctttgagcg ttcagccatt
     5041 gttgttcagt ttgctgtagt ttttcgctca tttggttcaa gttgccaaag agtaaaaatt
     5101 ctgcatttaa ctgtacccac tcaataaatt ggctgcggta atttgctcgg ctttgtattg
     5161 cattacgccc taatttcaaa cccaatcgat aaaatacggt aggaataacg gcaagcaata
     5221 ccaatagtgt gccgcaaatg atcagcatta atggcacgga aacaaaagaa agcccgattg
     5281 ccataaatgc aataatcatc actgcactga caaaaggcga gactaaattc agatataggg
     5341 tgtctaacgt atccacatct gccaccaagc ggtttaacaa ttcgctgttt ctaaagcgat
     5401 ttagcccgct tggactcagt ggaatcaatt ttttaaagac gctagcacgc aaattcgcca
     5461 atacccgaaa agtcgcatcg tgggtgacta aacgttcaaa gtaacgtgaa attgtccgcc
     5521 ctactgccaa ccctctcacc cccgatgaag ggtagaaaaa gttaaaaata agcgcattgc
     5581 cggctagaaa tgaggcagct aaaaaccaac cggaaaggct gagcaaaccg atacttgccg
     5641 ctaatcctaa aattgccagc acaacaccta ataatagtcg cccaaaatgg gtttggtaga
     5701 gagcaaaaaa cgggaacaac gatttcatta gatttctccc tgatgcacta attcattatg
     5761 tattaattcc gcaaaaaagc cggtgtgttc taattcagtg aaacgacctt tctgaatgat
     5821 ttgcccttgt ttcatcaccc aaatttcatc gcattgggtt aaatcttcca ctcgatgagt
     5881 aatcattagc gttgtttgct ctcggctgag attatgcaga gcggctaaca cttgctgttc
     5941 cgaatccata tcaaggcttg cagtcggctc gtctaacagt aataattcgt acgggcgaag
     6001 caacgctcgt gcaatcgcaa tccgctgtgc ttgcccgcca gagataccga tattactgtc
     6061 ttgcacttga tgctccaacc ctaaacgtgc cacaaattca tcggcttttg aaagctgtaa
     6121 tgccttggct aattcagaat ctgtcgcatt agggttgcct attaaaatat tctctttcaa
     6181 actgccatgc attaattgcg gattttgccc cacccacgct aatttcgctc gccattggct
     6241 taaatttaaa tctcgcagtt cggtgccgtt aatcgtaacc gacccttcat aaggcaagaa
     6301 accaagtaac atattcatta atgaactttt tcctgcacca ctttgcccaa ccaaagcgat
     6361 atgttggtgt gcattcaact cgaaatttaa cgcttgggtt aaggctttgc cttgtggtga
     6421 gaagatcacg caatctttgg cttgaatcac aagcggttga ttttcaacat tttcttgcaa
     6481 attgccacct tgcgttttca ccttttcttt taagaaagtt tcgatattat ctgcggcact
     6541 aatcgctgct gccttgtcgt gataaaacac gccaagttca cgcatcggtt ggtaaaactc
     6601 aggtgccacc attagacaaa agaagccgat aaataaggtc acgcccgtac cataatagcc
     6661 aaaatccagc tcacctaaaa aaataaagcc aaaatagacc gccgtcaccg caatcgatac
     6721 cgccgtgaaa aactccaata ccgcagagga taaaaacgcc atttttagta cgtccatcgt
     6781 actgattcgg aaatcttcgg tgctttggta gatttgttca gtctgctttt ccgcttgccc
     6841 aaataagcga atggtttcta aaccttttaa tttatctaag aactgtccgc taatacggga
     6901 aagaatgccg atattacgct gatttgcctc cactgctttc attccggcta aaatcataaa
     6961 taaaggtaat aatggcattg ttgcaaataa aatagcccct gctgcccagt taatcgggaa
     7021 tacaaaacag aggatcagta atggcactat cagcgataaa aattgctgtg gcaaatagcg
     7081 tgcgtagaaa ttatgtagat tttccacctg ctcgagcatt aaggttgccc agctgcccgc
     7141 cggtttttgt tgaatgctca tcggcccgac tgcttccatt ttggctagaa tttggcggcg
     7201 aagatgtaaa cgcaaggttt gccctgcttt gaaaccgaca cgctcacgca gaaaaatgaa
     7261 gaatgctctg gcagcaaaac aacagaataa gagcataatt tcaaccagaa agctattcgg
     7321 tgactgcttt ccgataagca ttttgtctaa cattgtggca atcagccaca tctgtccaat
     7381 catacataaa ctactgaaac tccctaacag tatgtttaag tgcatatatt ttttgatgac
     7441 tttttgctga cttttaagcc atttttgtaa ttcgcgttgg cgttgttttt ccataatttt
     7501 gtcaattttt ttgttttttc aaccgcttgt aaatcgggtt tgccattcta ctataaagca
     7561 aaaaggttgt taatggcgaa acattaacaa cctttcattc agccttaact agaatagctc
     7621 gtcaaattca aagcgataca ttaaatctac cgcttggtta atacttgaga cccattgtaa
     7681 gtacaatctt ggcgttaaat tatagcgtaa ggttaattcg gtaagcggtg caaaaatgcc
     7741 cacgccatac ttcactctga atttaggggc aaggctggca cttacttcta ctttggtgtt
     7801 atcgccaata cctgcggtgg tcacgcttaa atctttgagt ccgaaagtgc taccaacatc
     7861 acccaccaat ttactgcttt ttgataagct catactgagt aatgccgctg cgactgcatt
     7921 actggagctg gtatcgccac tgctttccaa tgaacgacca gttaaaatat aggaaagtgc
     7981 ttcattttgc gacattgccg gatcagagaa tacttttacc gttggattgt ctgccaaacc
     8041 ggtcactctt accccagctg taatggtcgg atcttccatt gcctccggat tgcgtatagc
     8101 ttcaatatct aaggttggct gagacggtga gccggcaaaa ctaatatcac ctttacgaat
     8161 cagcaagtct tgaccataag cggcaaatcg tccttcacgc aaatgaactt gcccgtaaag
     8221 ccctaaacct tgtttgcctt gcctgacaga caataagcca ttcacgttac tgtttaaacc
     8281 ataggctttg agtttgacat cattaccgat gttaatctta atatctgcat taattgccat
     8341 tccacctgag gtttgagccg gaatattacg ttggctaaac ggcactttat ttttcacaga
     8401 gccgtccata atcacctcat ctccacttac actgaccgca ctttcaggta actgctcgac
     8461 ttcaattctt gcccaaggga tatctacatt tccacttaag gttaaaagag ttggcgttgc
     8521 cgtcacttga atatccgggc taactgccac ttttgcgata ttaggaatat ccacttggaa
     8581 acggttagct tgagcgtgaa cccgtgtttt ccacgcattt agatctcgcc agtctgcatc
     8641 accctccaaa cgcagttcgc tttgtttggt ttgtaattta ccgcttaaag tcgatgttgc
     8701 cccgtggaaa ttcattgcta aattcccacc tgtaatatca aacggcattg taacagagcg
     8761 agcttttaac tctgtaacgt ttagatttcc gtgcaataac ggagaggttg cggtgccgct
     8821 cacggtaaga cgagcattca cattgccatc aaccgaatcg ccccgttcaa gtagcggtcg
     8881 aatcagcttt aagcttaatt ggtcaagatg aatattgccg gataacgcac gagccttact
     8941 taaatctttc atcactaaat cagtcgaaag tctgccgtta ttttcgaccc ttaaatcaga
     9001 tttaagggtt aaattattgt cagacatttt cagatcaatt ttaagcggtg aaacggtgag
     9061 tgggaaactt tttcccccct ccattttttg aataaattta atcgcattag aggttaaatc
     9121 cagattcact tgaggctgtt tgtttttaaa ccaagctgca tcgcctttgg cattcacaat
     9181 ccctgaaagc tggctgtttt tctccaaaaa ttgttgcaat accgctaaat caaagttacg
     9241 gatttcaaaa ggcactttac cctcaacacc ggcattaaat gcagtcggga aacaaagatt
     9301 aattttccgg ttatgccaac aatgtgcgga aatattggcg ttaatggctt tattgtcata
     9361 tttcacattc actgctttat ctgcttggaa ttgaccaaac tcggtggatt gaatcgaaac
     9421 ttggcttaat tgcccttccc aaatttcttt caaacggtca aattttccag aaatttgcaa
     9481 atcagcacca accggattgc cttttgcact taatttcaag ctatgatttt cttcatttcc
     9541 ttttagcaat aaagtggcat ttcccacttt gatttcatta taggcaaatt gacgtaaccc
     9601 caaggttaaa tccccttgaa tggttttctc agtggtaatt ttgccttttg cggttaaatt
     9661 ttgcagttta aattgctcat agcctacatt tgaggccact aaatctaaat caatgttagg
     9721 ttctgaaacc ttacccgata atttggcatt accattcacg ctggctttta aattcggcac
     9781 taacccttgc aaattagggg ctttaatatc cgcatagaaa tcagattttt cgcctaacac
     9841 gccttttaaa tcgatcttat tttcaccata caccagcgat aagcccggaa catctaaaag
     9901 ttgttgatga tcggctttta aattaccgct taagtgtaga tttttctgta ataacgaacc
     9961 tttaatatca atattcgaga cgtccgcttt ccatccgcta gctgaattgc cccgtcctgc
    10021 ataaccttcg gaagataaag aaccggacaa taccgccggc cagtctgcca gtagggattt
    10081 agtgttaata tgctgaagtt tcaaatttga acgccacgca acgccctcgc tccaatccac
    10141 taaaccgtcg atcttcgccg taccttccag cgtattgaga cttaaatctt gtatattaaa
    10201 atgggttaat tcccctttgc cagttaaact agccgagctt gcaggcacgc ccattccttt
    10261 ggcactgact ttagcctcca aagcgtaatc caggagattg ccattaagcc tcatggcgat
    10321 attctctaaa ctcagcacat caccattttg ctgaggagca aacggataac gcattgactc
    10381 actcttcagc gataaatcaa agggagtttt cgcctgagcc agtgcaacat tgccctccaa
    10441 cgaggcgcta attgcaccag ccgtcttcac ttttaggctg gttttgtcat atagctcacc
    10501 ggaaagagag gcttcaattt gattgaacgg caattttact ttcgccgttt ttgcctcgtg
    10561 accacttagc gtccaactta gcggataatt atcttgtaac gataaagaac cgcttgcggt
    10621 tagatcccct tggtcgcttt tgaaatctaa actttttagg ttgatatgct gatcttttgc
    10681 ttgagcctga agctgtaaag aggcaacatt taacaatgag atcggctcaa tcaaattccc
    10741 tttttcatct ttagcttttt gagcaatcgc tacattcgca atatcaatct gttcaatatt
    10801 gagatcaaga ggcaaactaa agcgaatatt tttatccaat aacggctgtg ctaattgtgc
    10861 tttaatcgct gcccaatcca ctttattatc cacctgttcg gcctgtgcaa cagtttttct
    10921 ctgtaattgg tgaaagccct ctacgacttt ttcactggtt ttttccaccg cctcttgaat
    10981 cactttatca gcaatctctt gtggatttgt cgctgataac gcctctgttt ttgcattttt
    11041 ttgtgcaaaa tcgacagctt gttcagtatc agtttcgtct aactttaagg ctaaaagcag
    11101 atttagcccc tctaactgtg tcgggtgaac ggtaatagcc cgccctttac cagaaagtgc
    11161 agtgtggaaa tgattaagat gaatatccat atcatcaact ttgaccttga tattctctaa
    11221 attgatattt tgagctgaaa tccccaatgg caaatttaat tcggtgaaag gttcggtctc
    11281 ttcttttggc tgagaagggg gtaatttagt cgtatcaatc aacacctctg tatctttaag
    11341 gctgagatta ttcaaacaca tttcatagtg gagcaagcag ctaaaaccaa tatgcagatc
    11401 tgcttgccca accgttacat tcacaccgtc catcacaaat cgggcatcag aaagctgtaa
    11461 cccatcttgc aggctacctt gcacttgccc aagttgtaat ggctctacga atttatctac
    11521 ccagcttaac actttacgtt gcccgtaacc tgtgcataga aagagaatgg cgagtaaaag
    11581 tagaataaac gtcagacaaa agccgtgctt caaaaaccgc cactttgatt ttttaggctg
    11641 tgttgcttgt ggctcttgtg ctgagtccgt ttgatttgtg gctgtttgtt tattttcgtc
    11701 agtcataatc gtgcatattt atgaggtgat aaaaagtaaa caagcggtat gcgaaatttt
    11761 actgaaattc gaccgcttgt tttcatttac agatcggaac ctaaaccaat ataaatttgt
    11821 attcctttgg aattatctgg tgattttacc ggcgtggcga catcaaattt aatcgccccg
    11881 ataggtgatg cccaacgcac ccctaagccc gtaccgtagt agagatcctg agttttgaat
    11941 ttattcgatg ccaagcctgc atcataaaaa attgcacccc accaattagg gtaaacctga
    12001 tactgatatt ctactgtgcc tgtggctaaa tgagagcctc cgacacgttt gccattactc
    12061 ggatcacggg gggaaatatc cttatagcca aagccccgca cactcatatc gccaccggca
    12121 aaatagcgta acgccggtgg aatacgttca aattgattgg ctttcaaata ccccaactcc
    12181 gcccttaaat agaaccgatg gttatcaaag taagttctcg cccaagatgt cgaggcttta
    12241 taactataaa agtttacatc tgaacctact gcacgactcc cccagtttac cgttaatttt
    12301 tgtgtatccc cccataatgg gtaaggcttg ccatctgttc tggttcgatt caatgatgcc
    12361 gttgggtaaa ctaataaggt tttaaatcga tcattagctt gagtaaaaga atcgtaacgg
    12421 gcttttaaac caacagaaaa tgaccaaccg gtttcgtgag tccagaaacg ttgtaagcca
    12481 agggtggcag cggttgattt tgtatcgttt tgatcttcgt tttctaaagt gccggataat
    12541 tggtaataat aatgtagcgg atcttctcta agtggaatat tataaccaaa ttcaaatgtc
    12601 tgctccggct tagaaacgta cgttcggctt tcaatactat gacctcggct atttaaccaa
    12661 ggtttcttcc agttaagctg taaccttggg ccaacttcag tttcgtagcc tatcccaatt
    12721 tccacttcat tgcgtttttt aggctgaaat aacacattta aatccactaa tttatcctgt
    12781 tcatttaaat gtgactcaac catcactgat gaaaaccaat tactggaaag gtaatcttgg
    12841 gttaaaatcg aaagatcgtt agctaaatat ggctcaccgg aatgaatttt aagaatattt
    12901 tgcaaatatt cttctttgat ttggctatca acaaaccgga tttgtccata atggtatcgt
    12961 tttccgctat catagcctaa acgccaatcc gctttatgat cggtcggata aacttccaaa
    13021 cggtgataaa gccaatgacc gtcaaaatac cctttactaa aagcggtact ttcaatatca
    13081 cctttaaaat tatcataggt tttatggttt aaacgactac cttgttttgg ggctttactg
    13141 actagatgag cgaaatcttc gtccgttttt gcatcgcctt gcaaaacaat atcggtttca
    13201 tcaattttta ccgtctcttt atctagctca acatttaata ctaagagcgg tttctttccc
    13261 tcttgaggta gctgcacaaa ttggtatcgg ctattataat agcccaaggc tctcagagct
    13321 ttatctactg tggtttgcac caaatattga taacgctctg aaccatctgc atattcattg
    13381 gcaatttgat ctaaatatag ctccacattt ttcttggcat ctttaccctg aatgcctttg
    13441 acttctaaag tgactaatgg ctctatttct ggctcatcat cactatcttc cgctaatttt
    13501 tcttgcagat tttcaactcg ctcacgatct acgtcagaca gcctttgctc ttgatttgct
    13561 tgtgccattg aagcaaaagc cactaaacag cagaatgtta aaaaatgtag ttttgtattc
    13621 attagtaacc tttttattct tttggaatgc cacgcaaaag cggaatactg tcataaggcg
    13681 gaacagaact taacgctggc tcttgctcaa agagcataat gaatggtttg tcaggcactg
    13741 ttttttcatt acgccacaag tttccaacac tcaccaattc aatatcttga ggtagttgtg
    13801 ctaaattttg cttcagtaca ctaatcgtat tcttgcgagg gtgtcctatc accaccgcta
    13861 ccccgttttt tcgtgcgtga ttaattgcat gtgcaaactg tttttgtaca tcagcaagca
    13921 gatcgctatc atctaaaaaa atgtctctct ccagcgtatt aataccaaat tgacgagccg
    13981 ttttagccgc cacactactg ccaatagttt tactgtctaa aaagaaaagc gtattttctt
    14041 ttaacacttt caacaaatgt tgcattgtag cagagtctga agttgctcca ctgcccatat
    14101 ggttatttaa accaatagca tatggtactt gaccacgaga agtatgaata agtttccgaa
    14161 ttttctcttc gttatcacca atatgaatac ccccctcttc aattggctgt ttcgatttag
    14221 gttccattgg caaatgaatc aaaatatccc gtttttggtt ataagcgtcc tttgcccgtt
    14281 ctgttgcata gggtgcaaca ggaataatcg ccacgcttac cgccttgggt aaggctaaga
    14341 tttctcgatc ttcttttatt cgatagccca catcatcaat tacaatcgcc atttgagctg
    14401 cttgtacaag cggtgtaaaa agcacaaaca tttgcaaaaa aatgttaaaa ttcaaccgct
    14461 tgttaatttg tttaaacatc tatttcacca aatttagagg attaatcggc gtgcctttac
    14521 gggtaacacc aaaatagagt gcagaacggc tttgtccccc actgttacca accttcgcaa
    14581 taacctgtcc gccttgcact cggctaccct tgctgactga aatagattgg ttatagccat
    14641 aaagggaaat atcaccattg ccgtggtcaa tcgcaaccat attgccatac cctgcaagcc
    14701 attgagccat tatgactcgc ccgctcgcca ttgctctaac cgaagtaccg gcagaagcac
    14761 caatcactac accgtgccaa ttattaccaa aaggagtgat aatattgcca gacaccggca
    14821 tcgtatatcg accagccttg atcggtgttc tctcaacatt ctcagttgtt ttggactgac
    14881 cggattttgc ctgtttttcc cgctgttgtt cacgtttttc tgcttgctga gcctctcttt
    14941 gcgcttgttc taattgttgt tttagtgcct gttcattgct gcgtaaattc tctaatcggc
    15001 tttgatcctg ctcaagcgtt ttatcgatta aacgtaaggt actttcacgc tggctttgta
    15061 ctttctttaa atctttctct tgtttctttt gttcattaag ttgcgtttga tgatcttttt
    15121 gctggccttt caattcatca cgtctggctt taagatcagc ttgggtttta cgaatttcaa
    15181 cgatcgcatc aatgcgaata ttattcatat gctgataata agcggtcatt ctttccgcat
    15241 tttttgcctc ttcagacatt aaacgctcta agaccgaagg gttcacccca gaacggtagg
    15301 cagagtccaa ctgctctttt aatttttctt tctgctgttt ttccaacttt tctaaacggg
    15361 caatttcagt ctcagtcgct ttaatggtct ggcgaacttc cgttaaagac atttcggttt
    15421 tttgtaattt atccaacacc ttccccattt ctacttcttg gttttttagg gtagattgca
    15481 acgcattacg tttttgcttt tgttcattaa tttttgaggt ttgctgttgg attttttgct
    15541 gaatctgatt aagattattt gcaaaagaaa aaggggtaga aaagcttatt accccactga
    15601 aaatagcagt ccaacagtaa gaatttattc gtttcaccag catacctttg tttcttcaaa
    15661 atattattaa ggttatattc taatcggtta tttgcttaag atcagctttt tagtgaaaga
    15721 atttaactat ctatttcaaa atataaagaa ttttgctata aatagcacaa tttcaaatcc
    15781 attaatttta ctcaaagcta aggagtcatt atgcaattag tatttatccg tcacggtttc
    15841 agtgaatgga atgctaaaaa cttatttacc ggttggcgtg atgttaattt aacagaacgt
    15901 gggattgaag aagcaaaatc tgccggtcaa aaattaaaag cagccggttt tgaatttgat
    15961 attgcgttta cttcggtttt aacccgtgcg atcaaaactt gtaacatcgt attagaagaa
    16021 tcagaccaat tatggatccc tcaagtgaaa aactggcgtt taaacgagcg tcactacggt
    16081 gcattacaag gtttagacaa aaaagaaact gctgaaaaat atggtgatga acaggttcac
    16141 atctggcgtc gttcttatga catctctcca ccggatttag acccacagga tccaaactca
    16201 gcacataacg accgccgtta tgctaactta ccaaaagatt taattccaaa tgcagaaaac
    16261 ctcaaaatca cccttgagcg tgtgttacca ttctgggaag atcatattgc acctgcatta
    16321 atttcaggta aacgcgtatt agttactgct cacggtaact cattacgtgc attagcaaaa
    16381 cacatcgaag gcatttctga tgcagacatt atggacttag aaatcccaac cggtcagcca
    16441 ttagtgtatg aactagatga caacttaaaa gtaatcagca aacgttactt ataattggta
    16501 aatttccgat aaaaaataac cgcttgtagt gcaacacatt acaagcggtt attttttgtt
    16561 aattttttgc aaatggcaaa gaacaaaaat aaaggcgaat catacattcg ccttattgtt
    16621 ttaaagtaga ttagaaatct aacaactctt tctcttttgc tgctaatact tcatcaactt
    16681 ttttaatgaa ggtatcggtg attttttgaa tatcttcttc agctttgtgt tgttcgtttt
    16741 cgctgatttc tttatctttt aataacgctt tgatttggtc attagcatca cgacgaacat
    16801 tacgaattgc cactttgcct tgctcacctt ctgctttaac gattttgatt aaatcacgac
    16861 gacgttcttc cgttaatggt ggaagcggaa cacgaatggt tgtgccggca gaagatgggt
    16921 ttaaacctaa atctgaggtt aaaattgctt tttctaccgc agagattaaa gatttatcaa
    16981 atacgtttac cgctaaagta cgggcatctt cagctaccac gttcgctact tgacgtaatg
    17041 gagtcgcaga gccgtaatat tccacttgaa taccgtctaa taaagaaggt tgggcacgac
    17101 ctgtacgaat tttcgcaata tgccctttta aagcctcaag gcttttttcc atacgatctt
    17161 gggtatcttt cttgatttcg ttaatcattg attttttatc cttttattta gtaactgaga
    17221 gttaaacaga gaaaattaat tattcagaaa tggttgtacc ttcttcagta ccgaatacca
    17281 cattgcgtaa cgcccccggt ttgcccatat taaagacacg aattggcatt ccgtggtcac
    17341 gagcaagcgt gaatgctgct aagtccatta cttgtaattc ttgctcaata acttgcgcat
    17401 acgttaattt attatatagt tttgcatctg cgtattttgc tgggtcttta tcataaacgc
    17461 catcaacttt agttgctttt aataccacat cagcttcaat ttcaatacca cgcaagcaag
    17521 cagctgaatc ggtggtaaag aacgggctac ctgtaccggc agagaaaatc accacacgtt
    17581 tttcacgcaa cattttaatt gcttcagacc agttgtaagt gtcgcaaatc ccatttaatt
    17641 ggaacgcaga cattaattta gcatttacct ctgcacggtg taaggcatca cgcatagcca
    17701 aaccgttcat tacggtggca agcataccca tatggtcgcc cactacacgg ttcattcctg
    17761 ctttggctaa ttttgcacca cggaataagt taccgccgcc aagtaccaca ccaacctcaa
    17821 cgccttcagc aagtaattct ttaatctcta acgccatacg atccaaaata gacgggtcga
    17881 taccaaaacc ttcactgcct tgtagggctt caccacttaa tttgagaaga attcgcttat
    17941 aaataggttt gctcatttta attgcctctt aactgtatgg actaaacaca aaattacgtt
    18001 attatagaac aatccaatat aacgataaac taaaaatatt cactacaatg aaatccaaac
    18061 aacttttcgg cattcttgtc gctatttcgc tggcaactgc tgctagctgt ttaatgctaa
    18121 tcggatcagg cttttttcca aatccgagta tctttgaagt cattttgggc gtattcctca
    18181 tcatcgctct tgccagctct aaatggactt attatttact cttactgcca atcagcatcg
    18241 cttatgcaat ttataccccg gttgggataa aattcggtaa accgacttac gagtatatcg
    18301 cctctatttt tgctaccgat atgatggaaa gcaaagagtt tattgctcaa ctgccgattt
    18361 taaatattgc ggcgggcatt gcgattgtac tagcggtcat tttttatcga aaaattacca
    18421 atcgctatca aatccgtttt ttacgcaata aaacattcgt gatttcggct tttgtattaa
    18481 tgctgttttc ccttgcaccg tttaaatttt ttcaggagtt ctacaattcg agcctaaagg
    18541 taaagaaaga attggaagtg ctgaacaatt taacgctaga ttcacaatgg ggacaatcaa
    18601 ccctcagctc aacttcaaac tacgatgatt atgtactgat tatgggcgaa agtgcgagaa
    18661 aggattatca ccacgcctat ggctatccgg ctgccaatac gccttttatg agttcggcaa
    18721 aaggaacctt gattgacggt ttaacctccg gtggcacaaa cactatcgcc tcattacgct
    18781 taatgctcac taagcccgat acggaaaaat gggaagcaaa ttatgggtta accttaattg
    18841 atttaatcaa atctaccggt atcaagacct attggatctc aaatcaaggc tatttgggca
    18901 attacgatac gccgatttcc tctatcggta ataaaagtga tgtcaaaatt ttcactaaag
    18961 ccggcgattc attaaatacc aatgtgagcg attttgaatt gttaccgcat tttgctaaag
    19021 tgattgaaga acctgctcaa gggaagcgtt tcatctttct gcatttatat ggctcgcatc
    19081 ctattacctg cgatcgtctc accgattacc cgaaaatgtt tgacgatgac aaactgccaa
    19141 aacgctactt taatgtaaat tgctacgtgt catctatcaa gaaaaccgat gaattgctga
    19201 aacgggtata tgatttgcta gtgaaaaacc aagaaaatca ccagcgttca ttctcaatgg
    19261 tttatttgtc tgatcacggt ttatcgcacg aggtttcaaa agagaacatt gttatccaca
    19321 atggaaagga tagaagtaaa ttacactacg atattccgct gtttaaaatt tcaagcgatg
    19381 atacccaacg taatgagtat aaagccttta aatccggctt aaacttcact aatggtattg
    19441 cgaattggat tggtatcgaa aatccgttat tagataaaga aattaatctt tttaacgaac
    19501 aaaacgataa aagtgattat gggctaaaga aaatcattga aacgcagtct actgtagaag
    19561 atccagctgt tcctattcct gaaagctact tatataaagc gactaattag caaaagtaag
    19621 taacaaaaaa gcaggcttta agcctgcttt tttagttttt agtatcagaa aaattaagcg
    19681 ttaccgccag tgattttcgc tacttctgct gcgaaatctt cttctacttt ctcaatacct
    19741 tcacctactt ctaaacgaat aaagttagaa actgaagtat ttactgattt taaatattga
    19801 cctacagatt gagatggatc cattacaaac ggctgaccgg ttaatgaaac ttcaccggtg
    19861 aatttagcca tacggccttc aaccattttt tctgcgattt cttttggttt accagaattc
    19921 atcgcaattt caatttgaat ttcacgttct tttgctacta catcagcaga aacatcttct
    19981 gggtttacaa attcaggttt gcttgcagca acgtgcattg ctactttctt aagctcatct
    20041 tcagagcctg cacctgctac taatacacca attttcgcac cgtgtaagta ttgagcaata
    20101 acttcgcctt ctaagtattg aacacggcga atgttcatat tctcaccgat tttcgcaact
    20161 aatgccgcac gtttttcttc aaattgtgct tgtaatgctt cgatagttgt acctttattt
    20221 gcaactgcaa aatcagcaac ttcgttcgct aattctaaga aaccggcatc ttttgcaacg
    20281 aagtcagttt cacagttcat ttcaactaat acgccaaaac ctgaagcgac acgagcaagg
    20341 attacacctt cagctgcaac acgacctgct tttttagccg ctttcgcttg accggattta
    20401 cgcatattat cgattgctaa ttcaatatca ccgttcgctt caactaatgc ttttttacat
    20461 tccatcatac ctgcgccggt acgttcacga agttctttaa ctaatgatgc tgtgatttca
    20521 gccattttaa attcccctta tttgatatgg taaaacaggc tctcacctgc ctagaaattt
    20581 cattgtttag ggcaggttaa aacctgcccc ctcaactgaa ttattccgca gaagcttctt
    20641 ctgctacttc aacagtttca acaccgcgac cttctttgat tgcagcaact gctgaatcta
    20701 agtaaagttg gatagcacgt gttgcatcat cgttaccggg aatgatgtag ttaacgccat
    20761 ctggagttga gttagtatca acaatcgcaa ataccggaat acctaagttg tttgcttctt
    20821 taattgcgat atgttcgtga tcagcaccga taacaaaaat tgcatccggt aaaccgttca
    20881 tatctttgat accgcctaag cttaactcta atttttctaa ctcacgagta cgcattaacg
    20941 cttctttttt agtgattttg tcaaaagtac cgtcttgagt ttgagtttct aaatctttta
    21001 agcgtttgat tgattgacga actgttttcc agttagtcaa cataccacct aaccaacggt
    21061 ggtttacgta gaattgttgg ctctctactg ccgctgcttt aacagcatca cttgctgcac
    21121 gttttgtacc aacaaataat actttaccat tgttactagc aatgcgagtt aattccgcta
    21181 atgcttcgtt gaataaaggt aaagtttttt ctaagttgat tacgtgaaca ccattacgag
    21241 caccaaagat gaatggtttc atttttgggt tccagtaacg tgtttggtga ccatagtgaa
    21301 cgcctgcgtt aagcatatcg cgcatagaaa cttgtgccat aagaattttc cttcaaagtt
    21361 gtttgttttg ccacttatga acggcaaaac ggggtttagc ctccacatat cctagaaaat
    21421 caatctgtta aagacacccc aattcctagc ttgtgatatg tgtgtgtttt agtgttaaaa
    21481 aataaatgtg tacgttttgc ctgaatagac aaaaacgggg cgtattatgc caaaaaacaa
    21541 acaatttgcc aattatttta ttgctctctt cgcattacta aatcaagctc aaaaataaaa
    21601 accgttctca ttattgacta aaaaaatggg gaggtttaga atgtctttca ttctgttatg
    21661 aaaacctgtc tgaaggagac tatcatgaaa aaaacacttt ctgcacttgc tattgctgca
    21721 gccactttta catcaacttc aacgcttgct gcaaatgaag tgaatgttta ttcttaccgc
    21781 cagccttact taattgagcc aatgctaaaa aactttgaaa aagatactgg cattaaagta
    21841 aacatcatct tcgctgataa agggttggtt gatcgtgtaa aacaagaagg tgaattaagt
    21901 cctgctgatg tgcttttaac agtagatatt tcacgcgtaa tggaaattgt taacgctgat
    21961 cttgcacaaa aaattgactc taaagtgtta gaaaaaaata ttcctgcaca attccgtgac
    22021 tctaacgacc aatggtttgg tttaaccaca cgtgctcgtg ttatctacac gtcaaaagat
    22081 cgtgtaggta aattaccagc aggctttgac tacctagatt tagctaaacc agagtataaa
    22141 ggtaaagtct gcgtgcgttc aggcaaaaac tcttacaatg tctcactatt cgcggcgatg
    22201 atcgaacatt acggcattga aaaaaccaaa gcattcttag aaggcttaaa agcgaactta
    22261 gcacgaaaac cacaaggtgg tgaccgtgat caagtaaaag caattaaaga aggcatctgt
    22321 gattactcta tcggtaacag ctactactac ggcaaaatgt tagatgatga gaaacaaaaa
    22381 tcgtgggctg aagcagcgat tattaatttc ccgagtggtg aacacggcac gcacaaaaac
    22441 atcagcggcg tagttattgc aaaacactca ccaaataaag caaacgcggt gaaattaatt
    22501 gaatacctaa gtggcgaaaa agcacaaggt ttatatgctg aacttaacca cgaatatcca
    22561 gtaaaagaag gcatcgagcc atcagcaatc gtaaaaggtt ggggtacgtt caaatcagat
    22621 accatcaaac ttgaagatat cgcaaaaaat tacgaagccg cattaaaatt agttgatgaa
    22681 gtgaaatttg acgatttctc tgagaaaaaa taatcaaccg ataagcggtc atttttccac
    22741 aaaaatttgc aaaattttgt taaaatacaa ccgcttgcaa aaggacgcat tttgcgtcct
    22801 tttatttttt tatgaaataa caggcttaaa gaaaaatgcg atcacaattt tgctggaaaa
    22861 gtattgctgc cctaacaact tttatcgttt tgcttcctct tattgcaatt tgctatcacg
    22921 cattgcaagg ggataatgaa aaccttgctc acctttggca aacaatgttg ccaatctatc
    22981 ttaaaaactc aactttatta gtattaggaa ccgttttcct tgcactgatt tttgctctgc
    23041 ctaccgcttg gattgtggca aattaccgtt tttgggggca aagaacctta caatggttac
    23101 tttgtttgcc tctcgctatg cctgcttatt taattgccta tttatatacc gatttattag
    23161 attactcagg tgcttttcaa ggctggctgc gtagtatttt tggctggact catccgcaag
    23221 attactggtt tcctcaaatt cgtacattgt atggtgcttg ctttgtgctt gcgttagtac
    23281 tatatccata cattttttta ttagtgcgag ttgccttatt agaacaatct gaaaacttaa
    23341 cacacagtgc aaaaatgctc ggggcttcgc cctctcagtt gttccgtcga attacgctgc
    23401 cattaattcg accttctgtt gccgtaggca ttgcattagt ggcaatggaa acgcttggcg
    23461 atttcggtac tgtggcctat tttgccgtgc caacacttac tacggcaatt tatgattcgt
    23521 ggctaggcta tcacgatctt ggtactgcca gccagattgc gatctttatg ttgctaatga
    23581 ttttcctgtt tttaagttta gagcaatata gtcgccgtaa acaaaaaagc tatcaacgtg
    23641 gctatgaaaa gaaatcagcc tttaaatttt taactggttg gaaattagca ttagcccttg
    23701 cttggtgctg gggtttattg gcgttagcct ttttcattcc gtttggcagg ttgctctatt
    23761 gggcatacga ctatttcgag caagcgtgga atttagactt tgtccaattt tcgcttaata
    23821 gtttgaaagt atcgatcatc gcctccgtga taacggtact gattgctcta cttctgcatt
    23881 tttctaaacg tttgaatacc cgcaaaattt tagtcaaaaa tgaccgcttg tcattacaac
    23941 ttgcctcact gggctatgcg gttcctggca cagtattagc gatcggttta ctttcgcctt
    24001 taacatttgc cgatcatcaa ctccatgctt ggctaaaaag ccttgaatta tcacccgttg
    24061 gattgatttt ttcaggctca ctctttgcat tagtattagc ttataccatc cgatttttag
    24121 caatggcaat tggcagcctt gaaacttcgc taaataaaat ctctccatcg ctggatatgg
    24181 cgagccaaac gcttggtaaa aatggctcag caatgttagt aaaaattcat atccctttaa
    24241 tttataaagg tattttaact gcaggattaa tggtctttat tgagagtatg aaagagctaa
    24301 atgcttctct gctacttcgc ccatttaatt ttgatacact cgcaacctat gtgtttacct
    24361 ttacatcaga cgagcagctt gagcgtgctg ctctgcctgc catcgtattg gtgttagtcg
    24421 gtttactgcc tgttatttgg cttaccagat cccttatttc gcaatctgaa aaagaaagat
    24481 aaaggaattt tatgtctgtt ttaactatta atcatctcaa cctcaatttc ggcagtacaa
    24541 aggttttaca aaatctccat cttgctgtga atcaaaatga aattatctgt ttgctaggtg
    24601 caagtggctg tgggaaaact acactgctca aagccattgc aggtttattg ccaattgagc
    24661 agggagatat tcatttagcg ggtgaatgcc taaaaagtaa agccgtggaa gagcgacaaa
    24721 tcgggctgat tttccaagat tacgctcttt ttccacactt gacggtagcc gataatattc
    24781 aatttggctt atccaaattg ccaaaagtac aacaaaaagc aattaccgaa aaaatgcttt
    24841 cagttgtgca tttacaaggc tttgaaagcc gttttccaca cgaactttcg ggcgggcaac
    24901 aacagcgtgt cgctattgcc cgagcattag cctgccagcc agaattgcta ctgttagatg
    24961 agccgttttc caatattgac agccaaactc gctatgcaat gattcaagag atcaagcaaa
    25021 tcttaaaaag ccaaaatgtg cccgctattt ttgtaaccca tagcaaagaa gaagcctttg
    25081 catttgccga taaaattgcc gtgatggatc aagggaaaat tattcaattt ggtaagccaa
    25141 acgagctata ccattctcca gttaatccat ttgtggcaga ttttttaggt ggcacaaact
    25201 atcttaactg taatgtaacg gaagacaacg tgttatgcag ccctattggc gagttccgac
    25261 tcttccctga aatgaacgtt cagaaagggc gttaccgttg gcttcttcgc ccagaacaga
    25321 ttatcttaaa acccaatgag ctaggtttag gtaaagtggt aggcaaactg tttttaggcc
    25381 tatactaccg ctatcaggtt gaaattaaag gcattgagat agtaacttac caatctcaag
    25441 agctgaaaat tggcgaacaa gtggaagtgg gcttccaagt aagagagttt atcctatttt
    25501 aaggagaata tatgaaaatt gaagtttggt cagattatgc ctgcccgttt tgttacatcg
    25561 gcaaacgcca cttagagcaa gccctagccc aatttgaagg cgaggttgaa gtggttttcc
    25621 gagcctttga gcttgatccg cacgctaacg gcgaaccgga gggcgatatt cagcaacgcc
    25681 taatgcggaa atatcaaaaa accgcagaac aagctgatga aatgattcgt tatgtggaac
    25741 aagccggcaa acaagctggg ctagatttgc gttaccgcac cacccaatac actcgcacct
    25801 ttgaagctca tcgcttggcg aaatttgcag aaagtaaaga cttaggcgaa gcaatggttg
    25861 aacgtttatt caaagcctat tttaccgata acactattct agctaaacgc acagagctta
    25921 tcagtttagc cttagacatt ggcttagagc gtgatgaaat cgctcaactg ctcacaggtg
    25981 atgatttcgg gcacgaagtc cgtgaagatg agcgagtcgc tcacaaatat ggcattcaca
    26041 gcgtaccgtt ttttgtgatc aatgaaaaac tcggggtatc cggggctcaa ccgccagaaa
    26101 tattacttga cgctatcaaa caggcattgc aaaaataatc cgaaaaaaga ccgcttgtta
    26161 agctaaacaa gcagtcttat tcttcttata atttacaatt tattttttgg tgatcgcacc
    26221 taaaatacca cgcataattt gtttggtgac ttggttgcgt aaatttctgc caactgaatg
    26281 cgccacttgg ctaaccactt gttcggtaat cgattgatct tttttcttct tcgagccaaa
    26341 aatggaagag agaataccgc caaagaagtc attgtttgct tcttctgccg cagcctgctc
    26401 tgctttaatt gcttctgctt tcgcattaag taattcaaac gcagattcat tatcgacata
    26461 ttggctgtag tgatgataga gatcatcttg cttcactaaa ctatcacgtt cgcctgtggc
    26521 taatggagct aattggcttt ttggtggata gatataggca atttctacag gcgttggcat
    26581 acctttttca tctagcaccg aaaccaacgc ttgccccaca ccaagttgcg tgatggcttc
    26641 taccacattt acctctttat tcgctcggaa agtttccgct gctgatttta ccgctttttg
    26701 atcacgtggc gtgaaagcac gcaaagcgtg ttggatacga ttgccaagct gccctaatac
    26761 tgaatcaggt atgtccaacg gattttgcgt aacaaaataa acacccaccc cttttgagcg
    26821 aattaaacga accacctgtt caattttatc caccaatgcc ttaggggcat cgtcaaacaa
    26881 taaatgagct tcatcaaaga ataaaacaaa cgtcggtttt tctgggtcgc caacttctgg
    26941 caaattctca aagagctctg ccataaacca aagcaggaat gcactgtaca ctcttggtga
    27001 gttaattaat ttttctgcat tcaacatatt gattacacca cgcccattac gggtttggat
    27061 ccaatcgtgc aaatctaatg caggctcacc aaataaatta tctgcccctt cattttcaag
    27121 ccttaataac gcacgctgaa tagctccaac gcttgctgca gaaatatgcc catattccag
    27181 ttggaattct ttcgcattat ctgcgacaaa tttaagcaac gcacgcaaat cttttaaatc
    27241 aattagcaat aaacctctgt catctgccac acgaaaaacg agatttaaca agcctccttg
    27301 ggtatcgttt aaattgagta aacgagaaag taacatcggt cccatttcgg aaatagtgat
    27361 tcgaagtggg atacctgatg taccaaatac gtcccaaaac gaaactggat agccctttaa
    27421 gtaatcttct ccccctaaat taaactgtaa aatgcgttct gcaatttttc ctgaaaaatt
    27481 acccgcttgt accgagcccg aaagatcacc ttttacatct actaaaaata ctggcacgcc
    27541 atcatcactc aaagattctg ccaatttgcg taaagtaacc gttttacctg tacccgtagc
    27601 cccagcaatt aaaccgtgcc gatttgccat tttggcatta agcgaaataa ctttgcctgt
    27661 ttctgttcga gcaatttgat acaaactcat ctttcattct cttaaaggta aattaatttt
    27721 ttgttctcat catataaaaa tttatcactt aattacggct attctttttc gtttttgcca
    27781 agaacgtttt tttacttctt gagcggttca ctttcggtaa agtcagtaag gattccttgt
    27841 cgtattgact cacaggaatc tgatgcccaa tatactcttc aattgcaggc aaattaaccg
    27901 cataacgctc gcaagcaaaa ctaattgaat ggccgctctc ccctgctcgc cccgttctac
    27961 caatacgatg aacgtaatct tctttatcat caggcagatc ataattgaaa acgtgcgtga
    28021 catctggaat atgcaatcca cgagccgcaa catctgttac cactaaaata tccaaattgc
    28081 ctttggtgaa attatccagc aaagaaaggc gttttttctg cggaatatcg ccggttagca
    28141 ttccaacccg atgtccgtct gccgataaat actgccagat ctcttcgcat ttatgcttgg
    28201 tgttggcaaa aatcatacaa cgctccggcc actcttcctc aagcaatgtc agcaacaatg
    28261 ccattttgtc ttcattcgag gggtaaaata gctcttcttt aatacgatgt ccggtttttt
    28321 gtagtggctc aatttcaata tattccgcat tatccatatc ttcataggca agttcccgca
    28381 cttttgccga aagcgttgcc gaaaagagca aagttaaacg ttctgaaggc ttaggtgctt
    28441 ttcgcattaa ataacggata tctttaataa aaccaagatc aaacattcga tctgcttcat
    28501 ctagcacaat cacttgaatt ttgtctaaat tgataatgcc ttgttttaca tagtcaatca
    28561 ctcgacctgt tgtaccgaca agaatatcta cccctttttc aatttcttga acttgtttgt
    28621 cgtaaccatc accaccgtat gccaaagcta gttttaaatc agaatgtttt aaaaacagct
    28681 cggcatctgc cccaatttga accgccaatt cacgggttgg agcaagaatt aatgctctcg
    28741 gctgattttt tgacgtttcg atttcgttat tcaataaatg gttaaaagtt gcaatcaaaa
    28801 aggcaagcgt tttccctgta cctgtttgag cttgccctgc aatatctttg cctttcagcg
    28861 taatcggaaa ggtttttgcc tgaatcggcg tacaaaattc aaagcctttg ctatcaaggg
    28921 catttagtac attagcgtga atcgggaagt caataaagcg gtgttcggta agatgattag
    28981 acatagtatt tccttgataa ttgtgatgtg acaagcggtc ttttttacac atttttttgc
    29041 aaaatagcat attgggcgtt ttttctcaaa tttaaccgct tttgagttta ttcggcaaaa
    29101 tagattggaa aagctctcgg cttttcagcg gttgtgaccc taaatagggc tttagtgcca
    29161 ttcgggtaaa acgtttcgct gcttgttgag tacttttttc tgaaaaatcc aactgagcaa
    29221 acgctaataa atcactgcct aaaaagctct ggttattctg taataatgag gcgataaagc
    29281 cctgattttc ctgaaattga taggtcattt tcggatcaac tggcaaaccg gttgccgcac
    29341 agtgcgtaaa atccacccca taacccaatg cttttaacgt atgaaattca aaggtgcgta
    29401 aaatcggctc aatctgtttt tgtgtggcaa gctcggtaat gcaacgtaaa taatgctgaa
    29461 ataattcagg gtaagcggtc tgattttcca atactcttgc aagtacctcg ttgatataaa
    29521 acccactata aagtgaaagc gtttccatcg gcaacgttaa tgcagccggt tctgctttgg
    29581 ttaaagtttt cagatcccct ttacccgacc aacgcaacaa caacggcgtg aacggctgta
    29641 aaaccgcttt caacggcgag cgagcccgcc ttgcaccttt agcaagtaaa gtaatccgcc
    29701 cgtgatgttc ggtaaaaaac tccactaata aactgttttc gctgtattca cgccgatgaa
    29761 ggacaaaggc tcgttgccat tggtctattg tcataatttc ttgttaatta tgaggttgta
    29821 atttacttct gccaaatctc cccctcccct ctttgctaaa gaggggagat cttgcagagt
    29881 atattttaaa gtcattttca ctatttaacc ttttatatag ataggaagat gaatttaaaa
    29941 tttctggaga actagtcccc ctctttagaa aagaggggtt aggggagatt tgattacgat
    30001 attaatgcta taacgggagc caactactcg tccatatacc ctaaacttct caatgctctt
    30061 tcatcatccg cccaaccagc ttttactttc acccaaagct caaggtgcac ttggttgtca
    30121 aataggcgtt ccatatcttt tcgagcttca atgccgatgg ttttgatttt ttgccccccc
    30181 gcaccaataa ccattttttt ctgaccatct cgttctacta aaatcaagcc attgatttca
    30241 tacaccccac gctcattcat tttaaattgt tcgatttcta ccgttaccga ataaggtaac
    30301 tcttcacctg taaaacgcat tagtttttca cgaataattt ctgatgccat aaagcgttga
    30361 gagcggtctg tcacatactc ttcaggaaag tggtgctcac cttgacgcag tgattgacgg
    30421 acaaatttct gtaaaatatg cacattttta ccccgttgtg ccgaaattgg cagaatttca
    30481 gcaaaatcaa atttttgtga aagctcggta atatgcggca gaagttcttc tttttccttg
    30541 atgttatcaa ttttattgat tgccaataaa acaggggctt ttgccgaacg caatttgttt
    30601 aacaccattt catcatcttc tgtccatttt gtgccttcca caacaaagat gatgagatct
    30661 acatcgccaa tagcagaact tgctgcacgg ttcattaaac gattaatcgc acgtttttct
    30721 tctatgtgta agcctggggt atctacataa atcgcttggt attgatcttc agtgtgaata
    30781 ccaacaatac gatggcgagt cgtttgagct ttgcgtgagg taatggaaat tttttgtcct
    30841 aaaatcttat ttaataatgt tgatttccct acatttgggc gaccaacaat cgcaataaaa
    30901 ccacaatagg tttttgcagg agtttgaatt tgttctgtca ttttgttttc ctttcattct
    30961 gtggaatgaa tttgatggtg caagcgtcca cgcttgtacc atttaattaa atctttagca
    31021 caagcgagga cgcttgcgct atcttacttt ttcgttttaa ccaccgctaa cgctttttct
    31081 gcggcatttt gttcggcttt tcggcggctg gtgccaatgc cgataaacac ttcctcgacg
    31141 ttaatcactt tacaggttac acggaaagtt tggttatgag cttcgccttt aatatctaat
    31201 acatcatatt caggcaatgg caattttcta ccttgtaaaa actcttgcag gcgggttttt
    31261 ggatcttttt gtgaatcgcc tggactgata tctttaagca aatctgaata ccaatcttcc
    31321 accttttcca ttgcttttgc catatcttga tcgagataaa tggccgcaat aatcgcttca
    31381 acacagtccg ataaaatcga ttctcggcga aaaccaccac tttttagctc tcctggacct
    31441 aattttaggt agtcgcctaa atcaaatttg cgagcaataa tcgctagagt ttgctcacgc
    31501 acaagagttg ctctcatacg gctaagctca ccttcattcg cttttggaaa tttgtcgtat
    31561 aatactttac caatagtaaa atttaaaatt gaatcgccta gaaattcaag acgctcattg
    31621 tttttggttg ccgcactgcg gtgtgttaag gcctgaatga ggtaatcaag gttatgaaat
    31681 tgataaccta attttttctg taatcgttct agttgcatag tttatgtgaa taaaggggcg
    31741 tatctcatac gcccctgtta agattaattg attgaggtaa acattctaga aaaacgaagc
    31801 cccgttggga attcatttgc ttttttatct aaacttaacc aaataaaagt ggctttacca
    31861 acgatgtttc tctcaggcac aaagccccag aaacgactgt cttcactgtt atcacggtta
    31921 tcacccatca caaaatagta tccttgtggc acaacccatt caccttctgc ttgcccttct
    31981 tgttggtaga aataaggtgc atagttaaat gccattgggt gatttaaaat ttgatgagtt
    32041 acattacctt tttcagtgcg ttctacctgc atttcaccgt gatagaaaaa ctcaggattt
    32101 ggcttgcctt cgctgtattc aaataccttt gtttcgccat tggctttagt aaccgttaat
    32161 tgctgagttg caaaatcata tttaatttta tcaccaccta ctgccaccac acgcttaata
    32221 taatcaacgt gtggttgtgc cggtgctttg aatacaatca catcgcctcg ttctggtttg
    32281 cccgtttcaa tcaaggtgtt ttgccagata ggatctttaa tgccgtagct gaatttattt
    32341 acgactaaaa aatcgcctac acgcaaggtt ggctccattg aaccacttgg aatttgaaac
    32401 ggttcaaata agaacgagcg aagtactgta acaaagaata aaatgccgaa aagtgaggca
    32461 aaaaattcgc ctactgcgga tttaggttga atttccgcta tttcttcagc ggttaattct
    32521 ctgcctaaac gtttttgttg tagaacaatc gcctgtttac gtcttgggtc agcactgaat
    32581 ttgtaaaacg cccaaaatcc accacaaata ataaccaagg caactaaaat aatggaaata
    32641 gtatttggca gttgcattga atcaagccat tgccaaatac cataaataat acctagaaaa
    32701 ataattggca taaattgtgc cactgaatgc tcctttttat tcaaaattgc aaagttttct
    32761 caaaatatga ccgcttgcaa gcggtcgtat tttacacgaa tattgacaat taatccttac
    32821 ccacatgaag aattgccaaa aatgcttctt gtggcacttc tacgttaccg agagatttca
    32881 ttcgtttttt accctctttt tgtttttgta gcagtttctt cttacgactt acatcaccac
    32941 cgtaacattt tgctaatacg tttttacgca actgttttac cgttgagcga gcaatgacgt
    33001 ggttaccaat tgccgcttga atagcgatgt caaattgttg gcgtggaata agttcacgca
    33061 ttttttccac taattcacgt ccacgatacg ccgcatttgc acggtgaacg ataatcgcca
    33121 acgcatcaac acgctcgccg ttaatcataa tatccacacg caccatatca gccgtttgga
    33181 aacgtttaaa accgtaatcg agtgaagcat aaccacgaga ggttgatttt aagcggtcga
    33241 agaagtctaa cactacttcg cccattggga tttcgtaagt taaggcgatt tggttaccgt
    33301 gatagaccat attggtctgt acgccacgtt tttccacaca aagggtaatc acgttgccta
    33361 ggaattcttg tggcacaagc atattacatt ctgcaatcgg ctcacgaatt tctgcaatat
    33421 tgttgattgc tgggagtttc gatgggctat ccacatagat cgtttcgcca ctggtttgca
    33481 ccacttcgta aactacggtc ggagcggtag taatcaaatc aagatcgtat tcacgctcta
    33541 aacgctcttg aatgatctcc atatgcaaca agcctaagaa gccacaccgg aagccaaagc
    33601 ccaacgcact tgaagtttct ggctcataga acaatgacgc atcatttagg cttaatttgc
    33661 ctaaagcatc acggaaggct tcgtagtcgt ctgaactaat cggaaataac cctgcataaa
    33721 cctgtggttt tactttctta aagcccggta atacttcagt tgctgggttg tggtggtggg
    33781 ttaatgtatc gcccactggt gcccctaaaa tatctttaat cgcacaaact acccaaccta
    33841 cttcacctgt ttttagctcg gtagtatcca cttgttttgg cgtgaaaata ccaaggcgat
    33901 ctacattgta agactgccct gtactcatca ctttaatttt atcgcctttt ttcagcacgc
    33961 catttttcac acgcactaaa gacacaacgc ctaaatagtt atcgaaccaa gagtcgataa
    34021 ttaacgcttg taatggtgct tccgcatcgc cttctggtgc aggcattttc ttcacgattt
    34081 cttctaaaac atcttcaatg cctaaacctg ttttagctga acagcgtact gcatcaatgg
    34141 catcaatgcc gacaatatct tcaatctctt ctgccacacg ctcaggctcg gctgctggta
    34201 aatcgatttt atttaaaatt ggcacaacct ctaaatctat ctcaattgcg gtataacaat
    34261 tcgccaacgt ctgtgcttcc accccctgcc ctgcatcaac cactaataaa gcaccttcac
    34321 aagcagcaag cgagcgagaa acttcatatg agaaatccac gtgccctggc gtatcaataa
    34381 agttgagctg ataaatttcg ccatctttcg ctttatagtt taaggttaca ctttgtgctt
    34441 taatagtaat tccacgctca cgctcaagat ccattgaatc taatacttga gcctccattt
    34501 cacgatctga taagccacca caagtttgaa ttaagcggtc tgataaagtc gatttgccgt
    34561 gatcgatatg agcgataatc gaaaagttac gaatattttg cattttcatc gggcagttaa
    34621 tgtcctgttt tgttatttgt ttatcaaaaa ttaatcgggg aattgtactt gaaatacaag
    34681 gttttgcaaa gaaaacaaat agcaataagc ggttattttt tcctaaaaat gtgcaaattt
    34741 cttgagaaaa atg
//
LOCUS       DANLXB010000003        29863 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLXB010000003 DANLXB010000000
VERSION     DANLXB010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29863
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            95..1153
                     /locus_tag="PXD41_000078"
     CDS             95..1153
                     /locus_tag="PXD41_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6287651.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSA
                     FYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIIL
                     QIMPWFYALQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLI
                     LAITTLGVMNVLPYIFLI"
     gene            complement(1150..2283)
                     /locus_tag="PXD41_000079"
     CDS             complement(1150..2283)
                     /locus_tag="PXD41_000079"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL6287652.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(2475..3314)
                     /gene="queF"
                     /locus_tag="PXD41_000080"
     CDS             complement(2475..3314)
                     /gene="queF"
                     /locus_tag="PXD41_000080"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL6287653.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            complement(3319..3867)
                     /gene="gmhB"
                     /locus_tag="PXD41_000081"
     CDS             complement(3319..3867)
                     /gene="gmhB"
                     /locus_tag="PXD41_000081"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL6287654.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            complement(3867..4334)
                     /gene="bcp"
                     /locus_tag="PXD41_000082"
     CDS             complement(3867..4334)
                     /gene="bcp"
                     /locus_tag="PXD41_000082"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL6287655.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGGEQVFDKFKTGEHHQMIVDYLRGR"
     gene            complement(4421..4618)
                     /locus_tag="PXD41_000083"
     CDS             complement(4421..4618)
                     /locus_tag="PXD41_000083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287656.1"
                     /translation="MKFGYLNGVLEGKGKMRFDEAKLHAESEFEKYRIVQDRLFESDF
                     DKVLKEMLRSENQYRPSFSTT"
     gene            complement(4587..5069)
                     /locus_tag="PXD41_000084"
     CDS             complement(4587..5069)
                     /locus_tag="PXD41_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6287657.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            complement(5212..6369)
                     /gene="hemW"
                     /locus_tag="PXD41_000085"
     CDS             complement(5212..6369)
                     /gene="hemW"
                     /locus_tag="PXD41_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL6287658.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            6591..8174
                     /locus_tag="PXD41_000086"
     CDS             6591..8174
                     /locus_tag="PXD41_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6287659.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            8386..9339
                     /locus_tag="PXD41_000087"
     CDS             8386..9339
                     /locus_tag="PXD41_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6287660.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            9341..11311
                     /locus_tag="PXD41_000088"
     CDS             9341..11311
                     /locus_tag="PXD41_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL6287661.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            11326..12132
                     /locus_tag="PXD41_000089"
     CDS             11326..12132
                     /locus_tag="PXD41_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6287662.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            12195..13781
                     /locus_tag="PXD41_000090"
     CDS             12195..13781
                     /locus_tag="PXD41_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL6287663.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            13827..15209
                     /gene="nhaC"
                     /locus_tag="PXD41_000091"
     CDS             13827..15209
                     /gene="nhaC"
                     /locus_tag="PXD41_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6287664.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(15252..16448)
                     /gene="ispC"
                     /locus_tag="PXD41_000092"
     CDS             complement(15252..16448)
                     /gene="ispC"
                     /locus_tag="PXD41_000092"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL6287665.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(16567..18765)
                     /gene="relA"
                     /locus_tag="PXD41_000093"
     CDS             complement(16567..18765)
                     /gene="relA"
                     /locus_tag="PXD41_000093"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL6287666.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            19019..20326
                     /locus_tag="PXD41_000094"
     CDS             19019..20326
                     /locus_tag="PXD41_000094"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL6287667.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            20511..22046
                     /gene="der"
                     /locus_tag="PXD41_000095"
     CDS             20511..22046
                     /gene="der"
                     /locus_tag="PXD41_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL6287668.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRKRLMKFIKK
                     SKK"
     gene            22142..23569
                     /gene="hldE"
                     /locus_tag="PXD41_000096"
     CDS             22142..23569
                     /gene="hldE"
                     /locus_tag="PXD41_000096"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL6287669.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            23583..24137
                     /gene="pyrR"
                     /locus_tag="PXD41_000097"
     CDS             23583..24137
                     /gene="pyrR"
                     /locus_tag="PXD41_000097"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL6287670.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            24210..25160
                     /locus_tag="PXD41_000098"
     CDS             24210..25160
                     /locus_tag="PXD41_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6287671.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            25222..26088
                     /gene="rsmA"
                     /locus_tag="PXD41_000099"
     CDS             25222..26088
                     /gene="rsmA"
                     /locus_tag="PXD41_000099"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL6287672.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(26199..26828)
                     /gene="upp"
                     /locus_tag="PXD41_000100"
     CDS             complement(26199..26828)
                     /gene="upp"
                     /locus_tag="PXD41_000100"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL6287673.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(26853..28538)
                     /gene="fadD"
                     /locus_tag="PXD41_000101"
     CDS             complement(26853..28538)
                     /gene="fadD"
                     /locus_tag="PXD41_000101"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL6287674.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(28516..28980)
                     /locus_tag="PXD41_000102"
     CDS             complement(28516..28980)
                     /locus_tag="PXD41_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL6287675.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(28977..>29863)
                     /locus_tag="PXD41_000103"
     CDS             complement(28977..>29863)
                     /locus_tag="PXD41_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL6287676.1"
                     /translation="YLTAMSEAHKKSTYELVYILQQGSDTESFRLRHAFTHNKEYAQL
                     LNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYANLKGYAFLDAG
                     KDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQ
                     SPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVE
                     SEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVIIGDVPL
                     QSAKQIMNNIGFKEGAQP"
BASE COUNT         8622 a         6426 c         5923 g         8892 t
ORIGIN      
        1 gatttttctc attgtgcttc cttattaaat ttagttatat tagaaatcat ttttctcatt
       61 aaatattatc tatgaatatc caaaatatca ttttatggcg gaaattcttt tccggtcttg
      121 cttatgctgc aatgcaaagc gtatttttta tctacttaca ttctacaaag gctttgaaac
      181 cagccaaatt gcaactgcat tttctttgtt ggtctttacc agccaagcat tttccctttt
      241 tgcaggttct tggggtgata gttttggacg ttaccctatc atgatgcttg gctgtttgct
      301 cgatgcccta gcttacattt tattactgac aacaaaaaat taccctctgc tattacttgc
      361 tacctttttc ttcgggctcg gtagcacctt atttagtacc aatgcgagag cattcttatt
      421 agccaatatt caagataccg gagatagtta ccaactcaaa actaaggctc aaggtaaatt
      481 tctgaaggta tcaagcctgt cagcgatggt agcaccatta cttactattc catttatttt
      541 ctaccgtaaa gcagaatggc ttatttggat tagctgctgc attgaaatta ttatgctatt
      601 cgttatgttt aaaaccgcac ccaaaacaca tgaatgtgca aatgggcaat gcgaacgctt
      661 taaatttggt gcattaaaag gaatactaaa tgaacaattt atttttgtac atttattact
      721 ttttattccg cttggtctag gaagtgcatt ttatattata ttcccctata tattcaccaa
      781 tcttctggat aaaccagaat tagtctctgt ctcattcttt gtgaataatt taattgcagt
      841 gttattgcaa tctgattttt cacgaaaatt aaatctgaca gtacataaac ttatttatat
      901 tgcaccaata ctgattatac ttcaaataat gccttggttt tatgcactcc aatggctttc
      961 aaccatcact gcatttctct atttagtgat ttttgccact attaccgtgt atgcgaatac
     1021 ggcactatct aatatgctag tgaaattaga caatggtaaa aaccaaggct taatgtttgg
     1081 aagctctaaa ttaattttag ctattaccac tctcggagta atgaatgtat taccttacat
     1141 tttcttaatc taagcagggt aaatcacgcc caaactcacg gctttttttg ctcctgtcac
     1201 gctaggcata ttactgggta aattatggat tcgctggtaa gctaaccaag caaaagcggc
     1261 agcctctaca taatcaatat ctaaaccaaa ttctgtagtg gttgtaacct cccactcggg
     1321 aagtaaagca gaaatccgtt ccattaataa cggatttctt gacccaccac cacaaactaa
     1381 aagcaagcga ggcagagagc tttcaaagcg taataactca ttggcaatac tttgagcagt
     1441 aaattctgcc agcgtgcgtt gcacatcttg tggctgacaa gcggtcaaat tttccaattt
     1501 ttttgcaagc cacgttaaat taaacagctc ccgcccagtg cttttaggcg gggctttagc
     1561 aaaaaacgac tcgtctaata acgtcgctaa cagttcagta ttgagcttgc ccgttctcgc
     1621 ccattcgccg tttttatcgt atcttttgcc ttgatgttgt tcgatccaac tatccatcaa
     1681 agtatttccg gctcctacat cataaccaac tgtaggggaa ttgggattta acaccgaaat
     1741 attgctgatg ccgccaatat tcagcaccac tgttagacga tttggatcgc taaaaatagc
     1801 ttgatgaaat gccggcacaa gcggagcccc ttgcccacct actgccatat ctttacgccg
     1861 aaaatcagcg atagtggtaa taccggtttg ctctgccacc aaattcatat cgccaatttg
     1921 ggtggtgaag ggatactcag aatccggtga atgccacacc gtctgcccgt gacaacctat
     1981 ggcttgaata tcttctgctt ttagctgatt tttcgctaaa aacgcattga tcgtttctgc
     2041 ataaagcaag cctaaacggt gatcaatttc ccccagtttt tggagattgg tttcgccggt
     2101 tttaagtaac gcagaaatat ccgcccgtaa ttcctccggc attggaaaaa aatcacaagc
     2161 ggtcattttc ggtggatttt ttgcaaaatc cagcaaagca atatccaccc catcaaggct
     2221 cgtgccggac attacgccta tatagtaatt tgggctatat tcattcatca taaaaatcaa
     2281 catctgctat ttgttacttt tctttgcttt gccaaagaaa agtaaccaaa agaaaggcaa
     2341 cccgagcttc accgctatcc tcgcttagtt tgaattggct taacggcaaa tttacattcg
     2401 ctccgctcag agtaaattta cctaccaatt caaacacgct caggcggttc agacgggaac
     2461 aaaaaacaac aaaatcattg gcgtgccatt cttagatttt ccggcacttc ctcaaaattc
     2521 gatctaaacg gattgatgtc tagcccgcct cgtctggtgt agcgtgcgta aactgttaat
     2581 ttttccggct cggcaaattg cattaaatca cagaaaatgc gttccacaca ttgttcgtgg
     2641 aactcattat gctcacggaa cgacactaaa taacgtaaca gtttttcacg gtttagcttt
     2701 ttgcctttgt agcgaatttg cacacttccc cagtcaggct gtgacgtaat taagcagtta
     2761 gatttgagca aatggctgac taaggtttct tccaccaact catcttctgc aatgttctct
     2821 aaataatgag tcgaaaacgc ataactgtcg atttgaatat cttgctcatc aatgcaatcg
     2881 cctgcaaaat caactatcgg ctgttgcgtg tagtgtgata attggtaaat ttttaccgaa
     2941 acctgaccgc ttgcacagcg agccagatcc gcttgaatcg ttttcccaac ttcttctatt
     3001 gagctaaatt tggtttggtt aaaactgttc aaatagagct tgaaactttt cgattcaatt
     3061 aagttttcgc tcttaaaatc aatggcgaca tctgcaatcg ctacttgcgg tagcccattt
     3121 tggttcaacc aagatagctc atagcaagtc cacacatcag cccctcggtt aaaaggctgc
     3181 tcttgtgtaa tgcctaaact atcacggttt aatttacgag gaacaggttg caaaagcgag
     3241 gcatcatatt cgcttttgta ctcggttttt tgccctaatt tcagggcgga aagggattta
     3301 tcgttataat tcattgcttt atttaatata ttttactaaa tcaactaaac tatctaacac
     3361 caaatcggct ttagcctgac cctcttccgt cactgctttg tcagtgcgaa ccagcacttt
     3421 ggttttcacg ccggcggctt ctgcggcaag gatatcttct aatttatcgc ccaccatata
     3481 agattggctt gggtcgatgt ttaaatcttg aatcgcttga gtaaacatac ctgctttagg
     3541 cttacggcaa tcacaatctt tacggtattc gcctttgcct tcggggtgat gtgggcagta
     3601 gtaaataccg tctagtacca cgccataatc ttcatcgagc gaccagtcca tccattcggt
     3661 tagttgcata aattgtgctt cgctaaaata gcctcgggca atgccagatt gattggttac
     3721 cagcaccaat aaataacctt tgtcttgtag ctgttttaac gccttgccga caccgtcaat
     3781 aaattgaaaa tcatcaattt gatgcacata gccgtgatcg atattaattg tgccgtcacg
     3841 gtctaaaaaa atggcttttt ttcccattag cgaccccgta gataatccac gatcatttgg
     3901 tgatgttcgc cggttttaaa tttatcaaac acttgctcac cccccccctg ctcatcaatt
     3961 aaaaaactga tgcgatgaat gccgtcatag gtttttccca taaatttctt ttcgccccat
     4021 acaccaaagg cttctgcaac ttggtgatcc gggtcagata ataaggtaaa attaagtgct
     4081 tttttctcta caaattgagc taattttttc ggtaaatcgg tgctaattcc gagaacaacc
     4141 acattgagct catcaagttc tgatttgctg tcacgcagtc cgcacgcttg cgtagtgcaa
     4201 ccgggtgtaa gagctttcgg ataaaaataa accagtactt ttttgccggc aaattgagag
     4261 agagaaaccg gctcgtcagc ctgattctga agggtaaatt taggggcttt atcgcctgct
     4321 tgtaagatat tcatttgtaa tttttccata aaaaataacc gcttgcatta tacacggcaa
     4381 gcggtcaaac ttggcaaaaa atttgcaaaa tgcggttgtt ttatgttgtt gaaaatgatg
     4441 gacggtattg attttccgaa cgcaacattt ctttcaatac cttgtcaaaa tcgctttcaa
     4501 ataatctgtc ttgaacaatg cggtatttct caaattcgct ttctgcgtgc aatttcgctt
     4561 catcaaaacg cattttgcct ttgccctcaa gaacgccgtt cagataacca aatttcacga
     4621 atttctgcca gcaactgctc aaaataatct tcatttaaaa atgtaccatt ttccattctt
     4681 tggcggtcaa tcacatagcc tttttgggcg aaattccgta atactttagt tgcccattgg
     4741 cgaaattgtg tcgcccgcac cgagtttacc ctatagccta tcgaaataac ggcatcaaag
     4801 ttgtagtgtt tggtacgata atttttgaca tctgcggcag ttaccgagaa atcctcggta
     4861 actgaatttg gatcgagttc cctactatta aaaatgtttt ttaaatgcaa agaaacatta
     4921 tctgttgagc aatcaaaaag ctgagcaatt aatttttgcg taagccaaat ttcgttatct
     4981 tcatagcgaa cggtaatatt ttctgcccca ttttgttgag taaaaatcaa aaattcggcg
     5041 gtactattac ggatttgttt atcgatcata agctctcctt attgtgaagg ctatgctact
     5101 aaacactgtt tttttgtcta gtaaaaaatg aggatttttc gacgcagatc acaaaaaacg
     5161 cctgtaattt agcattacaa tgcggtcttt ttttagtcgt ttttttgcaa attattccaa
     5221 aaatccttcc agtaattcat ttaaaaacaa tttaccgtgt tgggtaattt gccaatgggt
     5281 tgcggtttcg gaaatatagt tttggtttaa cgcccaatcg attgtcgggc gaacaacttc
     5341 cctgtctaac cctgtaaacc attcaaattc ttgttttggt gtcgcttcaa gtaatctaaa
     5401 gcggttcata aaaaactcaa acgggcggtc gtctaattca atcaaatctt ggctgtagcg
     5461 atattcacct cgcatataac ctttcgggtg tttgattttg ctaaagcgat aaatttcccc
     5521 ggtcggatat gaaattttgc cgtgagcgcc acaaccaatc gccaaataat ccccaaatcg
     5581 ccaataattt aaattgtgtc tgcattggta gccttttttg gcataagccg aggtttcata
     5641 ctgctcatag ccggcattcg ttaaaagttg atgcccttgc tcgaaaatat cccataactc
     5701 gtcatcatca ggcaaggttg gcttacgata atagaacatc gtattcggct caatcgtgag
     5761 ctgataccac gataaatgcg gtggattgag tgaaatccct gtttctaaat ccgccaaggc
     5821 ttgtttaacc gattggtttg gtaagccgtg cattaaatca atgttgaaac tttgcaagcc
     5881 cgattttgca gaattttggg caaatttaat cgcttgtttt gcttcatttg catcgtgaat
     5941 ccgtcctaat ttcaataatt tttccggctc aaaactttgg attcccattg aaatgcgggt
     6001 tacgccacct tgtgcgtaac ctaaaaatcg ctctgcctct gcggttcccg ggttcgcttc
     6061 cagtgtaatt tcgatatttg gctcgaatgc aatccgtttt tctacttcaa ttaataaata
     6121 agctatccct tccgctgaaa ataagctcgg ggtgccgccg ccaataaaaa tagaatataa
     6181 tttacgatca cctattgcca ctcggtaagc ggtcaaatct tgggataaat ctgcaagtaa
     6241 atgttcgata tattcttgct cgggaattaa tcctttttga gcgtgcgagt taaaatcgca
     6301 ataagggcat ttttgcacgc accaagggat atggatataa aggcttaaag gcggtaaaat
     6361 caggttcact gtcaattttt catttatgat taaattggcg aataataacg aaaagcacgt
     6421 gaagtgaaaa gcaaagattt tcgtgagcta gatcacaaat tcaataattc ttgctttacc
     6481 actttgacat taatgatatg ataaattcaa ttcaaaaaag tgcatttttt gataaattca
     6541 cttcagcaaa taataccgcc cctatcataa aaacttaaag gagctttaag atgaaaaaac
     6601 agtttgaaca caacgaatcc cgccgtggtt ttatgaaact aattgcaggt gtcggtgccg
     6661 gtatggcatt tagtggcact ttaggtacat ttacacctaa agcatttgca gcccctgccg
     6721 ccggctcaac gattgaggcc ggtatagctt atcccatatc aaccggattt gacccgctta
     6781 cctcaagcgg tgcatcctca atggcggcaa acctccatat ttttgaaggc ctcgtggact
     6841 tacatccagc cactcgcaaa ccatatttag cattggcagc agcagagcct gaaaaaattg
     6901 atgatgtaac ctatcgaatt actttacgtg acggggctaa attccacaat ggtaatccgg
     6961 ttaccactga agacgtagtt tactcatttg aacgtgtatt agacccagct aaagcatcac
     7021 ttttcgcaca attcattcca tttattgaca ctgtgaaaaa agttgatgac aaagtggttg
     7081 aattcaaatt gaaatatcca tttgcgttat tcaaagagcg cctaaccatt gttaaaatcg
     7141 taccaaaagc agtggtagaa gccggtcaag ctgcatttga tgctaatcca gtggggactg
     7201 gcccatataa atttgtatcc gcaactaaag atgatcgtat tgttttcgaa gcatttgcag
     7261 attataacgg tggctacccg gcacaagtcg agaaaatgac ttggttctta ctttctgatg
     7321 atgccgctcg tgtaaccgct caagaatctg gccgtgttca agcaattgag tctgtgcctt
     7381 acttagatgc agaacgctta aaacgtaaag gtaccgttga gtcagtacaa tcattcggct
     7441 tactgttctt aatgtttaac tgtgaaaaag caccgtttaa caacccgaaa gttcgccaag
     7501 cgttacatta tggcttagat acccaaaaat taattgatgt ggtgttctta ggcaatgcaa
     7561 aagctgctac atcttacgtg caagatactc acccggatta tgtgaaagca aattcgcaat
     7621 atgatttcga taaagcgaaa gccgaagcgt tattagcaga agcgggtgtg acagagttaa
     7681 aatttgaatt gttggcaacc gatcactctt gggtgaaaga atgtgcgcca ttaattcttg
     7741 aatcgtggaa cagcttaaaa ggcgtgaaag tttcactcaa acacttacaa tcaggtgcat
     7801 tatatggcac acacgttgat aaaggtgcat acgaagttgt gattgcacct ggcgacccat
     7861 cagttttcgg taatgactta gacctattat taagctggtg gtatcgtggt gatgtatggc
     7921 cgaaacgtcg tttccgctgg tctgaaacag ctgaatatgc agaagtacaa aaactgcttg
     7981 atgaagcggc caaaaatcct gctgcttcta aagaagcctg ggcgaaagca atcaatatta
     8041 tcgctgaaca agtgcctctt tacccaatta ttcaccgtaa attgccaact gcgtggaatg
     8101 ataaggcatt aacaggtttc caaccattac caacaacagg tatgtcattt atcggtgttg
     8161 gtcgtgctaa atagtcgtaa cggctagcta aatgcaagcg gtaatatttt acaaaaaatt
     8221 taccgcttgc ataaataaaa atcaaaatga tgtaatattc gtcttatatc actcagaatt
     8281 cttaccattt ctatattttc atttataatc ctacatatca ctatattagc ttgtaggtaa
     8341 acttagattt aattttggag tgtaactaca ctcaaggaga agaaaatgga aattatactc
     8401 cgattattat ggcgtcgcct aatggctctg ccggtaatga tcttaggcgt aactgccttg
     8461 gtatttattg ttttacaatt cacccccgga gatccggcaa ccgttgctct cggtgaaagc
     8521 gccagcgaag ccgctaaaga aatctatcgt gaacaacatg ggttaaatga tccattgctt
     8581 gtacaatatt ttcgcttttt agggaattta ttcgtattag atttcggtat gacaacccct
     8641 ccagaacagc ctattgttga tatgattgct aaagcattcc ctttaacatt acagcttacc
     8701 tttattgggg tcttcttagc tgctatcgtc tctttcacat taggtgtaac ggcagcactt
     8761 taccgtgata cttggattga tcaattaatc cgtttaatct cggttgccgc tgttgccaca
     8821 ccttctttct ggttgggtat tttattgatt caatacttct ccttaaaatt agattggttg
     8881 ccttcaggcg gttttattcc atttagcgaa gatccaaaag gctatgtaaa ctcaatggtt
     8941 ctcccttcac tcgctttagc tgttcctgta tgtgcctcat tgatccgtgt cgtgcgtaca
     9001 acaatggtag aagaaatgga taaagattat gttcgaacag ccatcggtaa tggtgtacct
     9061 tactcaacgg tgattcgcca caacgtgctt cgtaatgcct taattactcc ggtaacagta
     9121 ttaggtttac gggttggtta tttattaggt ggtgcagttg tgattgaaca gatcttcgac
     9181 ttaccgggaa tgggtaaatt aattttcaac ggtatcgtca atcacgactt gaacttagtg
     9241 caaggtgtag tattaactat cgcatttact ttcgtgttgg tgaatatcat tgttgatatt
     9301 ctttacttgc tcattaatcc aaaaattcgg agtttataat atgtttcgcc aaggattagc
     9361 tgctcgactt gcttcaggcg gtgcaagatt tagagcatta tcaaccagct caaaaatcgc
     9421 cttactcttt attgtattta tcgcattagt cgctattttt gcaccattag tagcgcctta
     9481 tgacccactg caaacgctac gtccagtgca agctccaagc ggtgattatt tattcggtac
     9541 agaccgttta ggacgtgata ttttctcgcg tatggtatgg ggagcaagaa catctctctt
     9601 tatcggttta ggtgcggtag gcgttgcgat tctattcggt agtattttag gggcaactgc
     9661 ggcaaccgcc gataaattcg gtaacgaagt gattatgcgt tttatggata tcttaatggc
     9721 attcccgggt atcgcattag ctgctgtatt acttgccact ttcggtaact ctgtacctgt
     9781 gattatcgtg actattgcgg ttgtttacac tccccaactt gcccgagtgg tgcgtgctaa
     9841 cgtagtatct caatgggaag aagattatgt gcgtgccgag cgtgtaattg gtggtagccg
     9901 tacttatatt ctattaaaac acgttgtgcg taatactgct gcaccggttt tagtattcgc
     9961 aacagtgatg gttgctgatg ccatcgtatt tgaagcatca ctttcattct taggtgcagg
    10021 tgtccagcct ccattcccat cttggggaaa tatcttatct gaaggtcgta accttgtatt
    10081 aagtggcttc tggtgggcta caactttcgc agggattatg attttattaa ccgtacttgc
    10141 gttaaatatc cttgctgaag gcttaaccga tgcgttagta aatccaaaac taaaacgttc
    10201 aactcaaagt aaagaagatg tcgcaaaacc attggcaaca gacgttcaag aagcaatgtc
    10261 tgaaactctt gcgttaaaac gttacttact caaattacac gagaaagaaa cgacccgtac
    10321 tgaccgtatg caattaaact caacggccaa accgatttta caagtgaaaa acttatcaat
    10381 ccgtttccca aatcgttatg gtgaaactcc gcttgttgat aatatcagct ttactgttca
    10441 cgaaggcgaa accatgggct tagtgggtga atctggttgt ggtaaatcaa tcaccgcatt
    10501 ctcaattatg ggtttattac caaaaactgc aaaaatcact ggtgaaatcc tctttaccga
    10561 ccgttcaggt aaacaacaca atcttttaga atcagccgat ttaaatgccc ttcgtggtca
    10621 cgaaatctcg atgatttacc aagatgcatt aagtgcgtta aacccatcaa tgcgtattaa
    10681 agaccaaatg gcacaattaa tcagccgtgg tggtaaacaa tcagcagaaa cattattgca
    10741 atgggtaaaa cttgacccgg aaaaaacgct caaccgttat cctcacgagt tatctggagg
    10801 acaacgtcag cgtgtattaa ttgcaatggc acttgctcgt gaaccgaaac tattgattgc
    10861 tgatgaacca acaacagcat tagacgtaac cgttcaagct gaagtgatca aattattaaa
    10921 cgaattacgt gagaaacttg gatttgcaat ggtattcgtg agccacgact tagctttagt
    10981 ggcacaaatc gctcaccaca tcacggtaat gtatgctggt caagtggttg aaactgcacc
    11041 aactacgcca ttattggcaa acccaacaca cgaatacaca cgtggattat taggctcggt
    11101 actttctacc gaattgcgtg cagaacgcct ataccaaatt ccgggcagtg tgccttcacc
    11161 atttgatttt gcgaaaggtg accgttttgc gagtcgttca ttaagaccag atgcaaaccc
    11221 tgaacagcac ttgaaattag tgccaaccgg tgatcaccca caacacttct gggcttcaca
    11281 cttagaagat ccacaatcta aagaagcata aaggagagca atacgatgag tatgaaattt
    11341 atcaaagaac agccaattat tgaactgtct aatattgttg tgcaatttgc ttctcgtgac
    11401 ggcaccttat ttaacccgaa aaaattcacg gcggtaaatg atgtcagcct agcaattcac
    11461 gccggtgaaa cagtcggtct ggttggacaa tctggttgtg gcaaatctac tttagccagt
    11521 gtgatgatcg ggcttcaaaa accaacctcc ggcacagtaa aatttaacgg cttagagatg
    11581 aaatatggca gtgcggaagc tcgcaaatat ttcggtagcc aagtgtcagt aattttccaa
    11641 gacccggcaa ccgccctaaa tccgcgtatg cgtgtgttgg atattttaaa agatccgatg
    11701 gatattcata atatcttaca accgcaagaa cgtgagaagc gggtttatga tttgctctct
    11761 cgagtcggtc tacctcgttc agcggcgttg gtcgagccaa cccgattatc tggtgggcaa
    11821 aagcaacgtg tagcgattgc tcgtgcattg gcattaaatc cgaagctgat tgtggctgat
    11881 gaaccaacct ctgcacttga cgtatcggtt cgagctcaag tactgaacct gctggcagac
    11941 ttgaaaaaag aactcaattt agcgatggta tttatctctc acgacttaca aaccgttcac
    12001 caagtttcag accgcattgt ggttatgaac ggcggtaaaa ttgtggaaat gggcgatgct
    12061 tcagacgtat ttgaacgccc aacgcaagag tacacccgaa ccttaattga agcagcacca
    12121 tctttattat aattgtgctt tgtgcctaca agcggtaaaa tttttcgcaa attttaccgc
    12181 ttgtgttttt atttatgatc caaattaccc aaaccattaa cattgattta ttaattgtcg
    12241 gctctggcat cgctgggctt tctgctgcag ttgaggcaaa agaaaaaggc attaatacct
    12301 tactgattag caaatctacg attggctcgg gagcgagcta ctttccgctt aaggcaacac
    12361 ttggcattca agtaaccggc gatgaagccg ataaaattca ctttaaagaa gatattgaaa
    12421 acatcggcaa aggcaaaatc aaccctaatg tggtacaagc ctatatcgaa gattcaccac
    12481 aagcgattga actactccac cgtatcggct ttcagccttg gaagcgtaac gacaaccgtc
    12541 cggcttgttt tgccaaatac cctcgcccaa tttatttaat taaagattgg cgggaatctg
    12601 ccctacgagc gaaacagatt ttgcaagagc aacacattgc tttctatgaa aatgctaccc
    12661 ttttacacat cgtcacagac aataaccaag tgcaaggtgc ggtattttcg ctcactacaa
    12721 gcggtcaaat ttcctatatt ttttgcaaaa ccaagcatct tattttagcc gcaggcggga
    12781 ttgctgggct gtataaagat aatctctacc cggctgatgt tatcggttca cttcattatg
    12841 tggcacaaca agccggggca accttggtta atcttgcctt tattcagttc attcctgcct
    12901 ttgtcgagcc aaaatacaag gtgctatttg gcgaacatac attgaaatat gtcacccaaa
    12961 tcaccgattc taagggtaac aatctatttc cacacttaaa tgccgagcaa tttgcaaaaa
    13021 tggtgctgga acgtagccat tatgctcctt tcagccttga ttttgccggc gtggagttcg
    13081 atttagtgat gatgaaacat ttgcttgaaa accctcacga aaaaggcatt taccttaaat
    13141 acagccccaa actgtatgaa gacacggaag agttttatac cgtctatttg aattggctca
    13201 aaaatgaagt cgggattgat ttagtgcaag ataagattgc aatcaagccg tttgctcata
    13261 gctgtaacgg cggcattcaa attaatcaat ggggcgaaag tgcagtaaaa gggctatttg
    13321 cgattggtga gatttctcac tgcattgaag gggcaaaccg tatgggtggt aactcagtcg
    13381 gcggtggctt agtgtttgcc aaacgtgcgg tatcggaaat tgttcgttcg ctagaacaga
    13441 atgatttgca aaaaaacagc gaaatctcac cgcttgcaat ggcagaaaaa gcattaaatc
    13501 agcttgctaa ttcaactgct aatctagaac taactgccag tgaagtgctt tctactattc
    13561 gagagaaaat ggcgttatac gccaatgtgt accgcactcg gagcaacctc aaactactac
    13621 ttgaggaatt aaaccgtttg gaacaagaat ttgacccaat ctatcacgct caatatcaag
    13681 gcattgaaat ttacaatgcg ttaaaaaccg ctcaattagt ggtcaatcaa atgctaaatg
    13741 agcagagttt aggcgcgcac tacttagatg aacaaaatta gtctataata gccaacttat
    13801 ttaaaaataa taaattagga gtataaatga ataactacct acttaaatta aaaccaatga
    13861 cagcggtcat actttcgctt ttgacggtct ttatcttagg ttttacaatg attgggcttg
    13921 gctgggtgcc tcaaatttca attctagccg tgattgtaat gctgctactt ttcggcttaa
    13981 tcaataaaat tccgtttaaa aatatgcaag agggtatggc aagcgggctg atgtccagta
    14041 ttggtgcggt ttacctattc ttttttattg gattattggt ttcagctttg atgatgtctg
    14101 gtgcgattcc aaccttaatg tattatggct taagtgtgat ttcacctgaa ttattttaca
    14161 tttctgcatt cgcattaagt tctgtagtag gtattgcgtt aggcagtagt ttaaccacaa
    14221 ccgccaccat cggtgttgct tttatcggta tggcttctgc tttcggtgcg aaccctgcga
    14281 ttgtagcagg tgcggtggtt tcaggggcgt tttttggcga taaaacctct ccactttcag
    14341 acactactac cattgctgct tccgtagtgg gcattgatat gttcgctcat atccgtaata
    14401 tgctttatac caccatccct gcgtggattt taacagcatt attcctttgg tttttaaccg
    14461 aacctactga tgcacaaaat ttagcaaata tagagaacct aaaaaccaat ttgcaagaaa
    14521 caggattaat acacggctac tctttgctac cttttgttac gttaatttta atggcaatta
    14581 agcgtgttaa ttcaatttat attattgtaa ctacagtaac actctcgcta attattacct
    14641 atatccacag ttcgccaacc cttgaacagc tagggaatta tttctttacc agctataaac
    14701 ctgttgaagg cgtagattta ggcgaagtgg catcattagt ctctcgtggt ggcattaata
    14761 gtatgttctt taccatcact attgtattgc ttgcgttaag tttaggtggt cttttacaaa
    14821 tcctcggcat tttaccggca ctacttaacg gcattagcgg ctttttaacc agcacaggac
    14881 gtgttactct tgtagttgcc agcactgcgg tgggaattaa cgtcttaatc ggtgagcaat
    14941 atttgagctt attgttatca ggtaatactt tccgctcaac ttatgaacgt ttaggcttag
    15001 aagtgaaaaa cttatctcgc accattgaag atgcaggcac ggtaatcaac ccattagtcc
    15061 cttggggcgt gtgcggtgtg tttatcagta gcgtattaaa tgtaccggtg ttagattatc
    15121 taccatacgc attcttctgt tatatctgtt taatccttac cttaattttt ggatttaccg
    15181 gggtaacaat cagtaaaaaa gctaactaat atgtgaaaaa tgcctacaaa tttgtaggca
    15241 ttttcttttc attagagctg aagaacagct tgtttggcta actctctggc gagtttatca
    15301 atatgcaata catcagcaat ttcactgact tgaattggag caatattttc caccaccgtt
    15361 ctattcacgt tcacaatatc cgtaaagcgg atttgctcgt ttaaaaacgc ctcaacggca
    15421 atttcattgg cggcattcat cgctgttgtc gcatactgtc cttctgcaaa agcctcaatc
    15481 gctaatttta agttcgggta acgggcaaaa tccggctcga taaaggttag ctcttttaat
    15541 ttaaagaaat ctaatggtgg cacaccagca ttaattcggt ttggatatgc catcgtgtga
    15601 gcaatcggcg tacacatatc cgggttgccc atttgagcaa tcaccgagcc atcaatataa
    15661 cgcaccatcg aatgaataat tgattgtggg tgaatgatga tatccatttc ctcggctgtt
    15721 gcattaaaca accagcgggc ttcaatatac tccaagcctt tgttcatcat tgtggctgaa
    15781 tcgactgaaa ttttcttacc catagaccaa ttggggtgag caactgcttg agccggtgta
    15841 atcgcatcaa attcatttaa tggcttagta cggaacggtc cacccgatcc tgttaaaata
    15901 attttactga cacccagttc agcgagtgga caaaacccga ctttttgctg tgcctccggt
    15961 ggaagcgatt ggaaaatcgc attgtgttca ctatctaccg gtaagagctt cgcaccggat
    16021 ttacgagcct catcaataaa aatttgccca caggttacca gcgattcttt atttgccaac
    16081 aatacggttt tacccgcttt caccgcagaa agtgtcggta ataaccctgc tgctcctaca
    16141 atagcagcca ttaccatatc cacttcggaa tgtgcagcaa gctcacaaat agctgcttga
    16201 ccggctaaca cttcagtttt agaccccaaa gttgccaatg ccgtttttaa tgcttgtgcg
    16261 gatttttcat catccattgc cgcaaaagtc ggctgatatt gacgacattg ctccagcatt
    16321 aattcaacat tctttccacc aactaacgca aacacctcat attggtttgg gtttgggtta
    16381 tgctcaacta ccgataaagt gcttttaccg atagaacctg ttgaacctaa aatcactaat
    16441 tttttcattt tgtttctctt tatctaatga ctgataaggg cgaaagattt ttcgccccta
    16501 cgccgtaatt atgcggatac tcattcgttg tttgtaaatt gtttagcaaa aacaaccgct
    16561 tgtagattaa ctcgaaagcc gttttgcttc gataacatca tctaattgag cgatacgagc
    16621 caataattta ttcaaaattt caacgttgtt aagctgaatt tccatatcaa tggtggcaag
    16681 gctacgtttc acatcggttc ggctggaaac gcctaacacg tttacttttt catttgccat
    16741 aattgcactg acatctcgca gtaagccgtt gcggtcattg gcaatcactc gaatggttaa
    16801 gcttaaacca gaggtatagc cttcgcccca atccgcctcc acaactcgtt ctgggttgag
    16861 actttgtaat tcaaacagtt gctcacaatc tgcacggtga atcgaaatcc ctctgccttg
    16921 tgtgatgtaa cccacgattt catcacccgg aatcggctgg cagcaacggg caatggaatg
    16981 cattaagttc cctacgccct ctacaatcac atagcctttg cttggcttcg gctgattggt
    17041 gtttttattc acctgtttaa gtaccgcttc gtcttcttgt tcggcggtcg gtttaattaa
    17101 ttttgattgc aagaagtgca ttaactgatg aagacgaata tcgccaccgc caataccggc
    17161 atagagatca tcaaactgtt ttaagttata gcgaggcaga gcatattctt caatttgctt
    17221 gagcgtaaaa ccgaattttt ccatttcggc ttcaagggcc tctttgccga ttggaatatt
    17281 tttctctcgg tctaattttt taaaccacgc aataattttt gagcgagctt tgcctgtatt
    17341 cacaaaaccg gtattcggat tgagccaatc tcggcttggg ttcggctctt tttgggtgat
    17401 aatttcaacc tgatcgccca tttgcagatg ataagtaaac ggcacaatcc gccctgccac
    17461 ttttgctcca atgcaacgat gcccgatttc actatgaatt gcataagcaa aatcaagtgg
    17521 tgtagctttt tgcggtaaat cgatcacctc gcctcttggg gtaaagacat aaacacgatc
    17581 atcaaaaatt tgcgaacgca tttctgccac catatcgcct gaatcggcaa gatcgttttg
    17641 ccactcaagc aatttgcgta gccacacgat tttttcttcg tagcccgaac gccctgcggt
    17701 tgccccctct ttatatttcc agtgagcggc tacgcctagc tccgcatcat cgtgcatttg
    17761 ctgggtacga atttgcactt caatcgtttt ttcaccttcg cctaatacaa ctgtatgaat
    17821 agactgataa ccgttaggtt ttgggttagc aatataatca tcgaaatgtt ccggcaaatg
    17881 ggtatatttg gtgtgaataa tgcctaatgc cgtgtagcaa tcttctaacg ttggcactat
    17941 tacccgcaca gcccgaatat cgaaaagctg attaaatctc aaccgttttt tctgcatttt
    18001 cttccaaatg ctgtagatat gtttcgggcg tccataaatc tgcacattct tgatttcagg
    18061 acttaaacaa gcggtcagat ctgctacaaa atttgcaata taacgctcac gatccacacg
    18121 gcgttcgccc aattcaaatt tagcaatttg agtgtaagag acagggtgta aaatgcggaa
    18181 acagtaatct tccagctccc atttgagctg cccgataccc aatcgattgg caagcggtgc
    18241 ataaacgtga gaacattctt tagcggcgag aacggtatct tcttcggaat ggtggttact
    18301 atcacgcagg taggcaattc gttcggcaag tttaatcacc acacagcgga aatcgtccac
    18361 catcgccaac aacatgcgac ggatattgtc gatttgcaga tccgacacat tattggcact
    18421 aagctggcgg atattctcca tttcgagtac gcctttaact aagtttttga tgtcgttact
    18481 gaaatcttct tttaattgca ccaagtcgat cacattgtgt tttaccagag gaaaaagcat
    18541 tgcggcaact aagctgtcat cgtccatatt caagccgtgc aatacttcaa ccatctcaat
    18601 gccataccac atcagactat agtcggtatc cagtttttcc tgtgcataac tccacgcatt
    18661 gtgaatctgc tcaaaagtca caggagacat attcaggctt gcacaccaac tcgacaactc
    18721 aaaattattc ggttcaagtt gatgggaata acgaattgct accataaggc ctccttgtaa
    18781 atttttgtgg aaattagacc gcttgtacag cttaaaatgg agttttatta tacgtggaaa
    18841 ttcagaaaaa atttacccct aatcgaaaat ttaatccaag ttatcttatc ctctttactc
    18901 cttaagaggt agcaaccttg tgataaatca aacctatcaa cacaatcatt tgcacgactt
    18961 cacgctcttg attaaaatac ttgcgttttt attttgatct ttatttttgt gggtagcaat
    19021 gacaatttta gctttaggaa tcaaccataa aaccgcctct gtgggtttaa gagagaaagt
    19081 ggcgtttgta gatgacaaac gtaaactggc tcttgaacaa atccaaacga gcggattggc
    19141 tgaaagcgtg gtcattctct ctacctgcaa ccgcaccgag ctctacttcc accagcctaa
    19201 tatttctccc cgtgaagaga gcgaggaaaa tatccaatgg cgtgaacaat gtttccgctg
    19261 gtttgcccaa attcatcaac ttgatgaaag cgagttgcgt gaatgtttat attttaaaca
    19321 aaatttagaa gccgctaacc acttaatgaa agtggcaagc ggattagatt cactaatttt
    19381 aggcgaacca caaattttag ggcaggttaa acaagcctat caatatagcg aagatttcta
    19441 ccaacatcag caaaaagcga tgtccaccaa gctatcacgc ttgttccaac gcacctttgc
    19501 caccgcaaaa cgagtacgtt ccgaaaccga aatcggcagc caagcggtgt cagttgctta
    19561 tgcagcttgc ggtttagccc gtcaaatttt cgataatttt ggcaagttac gctttttgct
    19621 ggtaggggca ggcgaaacca ttgaattagt cgcccgctat ttaattcaac acggggcgaa
    19681 aaatataatg ttggcaaacc gcacccatat tcgggcggaa atgttggcgg aaaaactaaa
    19741 cgctccaatg caaattctgt cgttaagtgc tttgcaactc ggtttaaacc aagctgatgt
    19801 agttattagc tccaccggta gccctgatac cctaatcagt aaagaaatgg tggaaattgc
    19861 gcaaaaacaa cgccaatttg acccactttt gctgattgat attgccgttc ctcgtgatat
    19921 tgacgaaaaa gccggcgact tagagggcgt ttacgcttat agtgttgatg atttacaaaa
    19981 tattatccaa cgcaatatgg ctcagcgtga agaagccgcc aaacaagccg ctgaaatcgt
    20041 caaagaggaa agcaaagcat tttttgaatg gttaaaacaa cagcagtcta gtgatttaat
    20101 caaacgctat cgtcaagatg cggagcaaac ccgccaagaa ttgttggaga aagccctaca
    20161 agcaatcagt caagggcaag acagccaaaa agtattaagt gagctaagct acaaactcac
    20221 caaccagtta ctacacgccc caacccaagc gttacaagca atggcaaaaa gtggcaactc
    20281 caccggctta caaagttttt caagagcatt acggctagaa gaatgatgct cagcacattc
    20341 ttttaggcat atttgcaaaa aattgaacat ttttaaccgc ttgcggacgc acgccgtgcg
    20401 tccctccccg tgttcccgat cttcttctaa tttcaacttc cccaaatttc cgctataata
    20461 agccaatttt tgcaactatt ttgcaaataa ccggatatag aggatacaaa atgactcctg
    20521 ttgttgccct agtgggcaga cctaatgtcg gcaaatcgac tttatttaac cgtttaaccc
    20581 gtactcgaga tgccttagta gcagatttcc ccggcttaac ccgagaccgt aaatatggtc
    20641 acgctaatat tgccggctac gatttcattg taatcgacac cggtggtatt gatggtacag
    20701 aggaaggcgt ggaagaaaaa atggcggaac aatctttatt ggcgattgaa gaagccgatg
    20761 tggtgctttt cttggttgat gcccgagccg gattattacc tgccgatgtc ggcattgctc
    20821 aatatttacg ccaacgtgaa aaaaccacgg tggtggttgc caataaaacc gatggtattg
    20881 atgccgactc tcactgtgcc gaattctatc aattaggctt aggcgaagta gaacaaattg
    20941 ctgcagcaca agggcgtggg gttacgcagc ttatcgagca agtgttagct cctttaggcg
    21001 aacagctaaa tgccgagcaa tttaaccaag aacaagcggg cgaaaatgct aaaaatgttg
    21061 caaatgaaga aacagacgaa tgggataccg aattcgactt tgagaacgaa gaagatgcgg
    21121 cattattaga tgaagccttg gcagaagaag cagaagagtc gattgaagat aaaaatatca
    21181 aaattgcgat tgtcggtcgt ccgaatgttg gtaaatcaac actgaccaac cgcattttag
    21241 gcgaagagcg tgtggtagtt tatgatatgc caggaacaac ccgtgattct atttatattc
    21301 caatggagcg tgacggtcag caatatacca tcattgatac cgccggtgtg cgtaaacgtg
    21361 gcaaagtgaa tttagcggtt gagaaattct cggtaattaa aaccttgcaa gccattcaag
    21421 atgcaaacgt ggtgctatta actattgagg cccgagaagg tatttccgat caggatttat
    21481 cactactcgg ctttattcta aatgctggtc gttcattggt gattgtggta aacaaatggg
    21541 acggcttgtc gcaagatatt aaagatcaag tgaaatcaga gttagatcgc cgtttagatt
    21601 ttattgattt tgccagagtg cattttatct cggcattgca cggctcaggc gtggggaatt
    21661 tgtttgattc agtaaaagaa gcctacgctt gtgcaacgca aaaaacctcg acctcaatgc
    21721 tgactcgcat tttgcgtatg gctgctgatg aacaccaacc accattggtt aatggtcgcc
    21781 gagtgaaatt aaaatatgct cacccgggtg gctacaaccc accaattatt gtgattcacg
    21841 gcaatcaggt tgaaaaatta gcggattctt acaaacgtta tttaagtaat tatttccgta
    21901 aaagtttaaa aattatcggc tcgccaattc ggattttatt ccaagaaggc aataatcctt
    21961 ttgccggtaa gaaaaacaaa ctgacaccaa gccaattacg caaacgtaaa cgtttgatga
    22021 agtttattaa gaaaagtaag aaataatatc taacgatagc gcaagcatcc acgcttgtgc
    22081 taaaactaat aatggcacaa gcgtggacgc ttgcgccatc atttaacaga gaatattaac
    22141 tatgatgatg caatactctc caaaatttaa taatgctaaa gtgctggtgc ttggcgatgt
    22201 aatgttagac cgttactggt tcggggcaac caatcgaatt tcgcctgaag cccctgtgcc
    22261 ggtggtgaaa gtacaagata ttgaagagcg tgccggcggt gcggcaaacg tggcgatgaa
    22321 catcgccagc cttggcgtac cggtaacatt acacggctta attggcgatg atgatgccgg
    22381 gcgtgcttta gataaattac ttaattccca ccagatccaa aatcattgtg tggtgattaa
    22441 ttcgcaccca accatcacaa aattgcggat tctttcccgc catcagcaat tattgcggtt
    22501 ggattttgaa gagggttttc acaatgtaga ttctaccgcc ctacttgcaa aactttcgca
    22561 agaaattacc gcttacggag cattaattct ctcggattac ggcaaaggca cattggaatc
    22621 ggtgcaacaa atgatccaaa ttgcccgcaa tgctaaggtg ccggtgctga tcgacccgaa
    22681 aggcacagac tttgaacgct atcgtggggc aacattgctt acaccaaata tgtcggaatt
    22741 tgaagcggtg gttgggcatt gtaaagatga ggatgagatt gtcagcaaag ggttaaaact
    22801 gattgccgac tatgatttat ctgcactatt agttacccgt tcggaaaaag gaatgacctt
    22861 acttcgcccg aaccacgagc cttatcatct gccgacccaa gccaaagagg tttatgatgt
    22921 aaccggtgca ggcgataccg taatcagtgt attagccact gcgattgccg atggcagagc
    22981 ctatgaagaa gcctgctatt tagccaatgc tgccgccggt gtagtcgtag gtaaattagg
    23041 gacttcaacc gtcagcccgg ttgagctgga aaatgcgatt caccaacgca ctgccaccgg
    23101 ttttggcgtg gtttctgaag ccgaattaaa agcgattgtg gaagaagcga aaaaacgtgg
    23161 cgaaaaaatc gtgatgacga acggttgctt tgatattctt caccccggtc acgtttccta
    23221 tttggaaaac gcccgtaaat taggcgaccg attaattgta gccgtcaata ccgatgcttc
    23281 ggtaaaacgc ctaaaaggcg aagctcgccc gattaatgat ttagctgccc gtatggcagt
    23341 tttagctggt ttagcctctg tagattgggt tgtgcctttt gatgaagata caccacaacg
    23401 tttaatcagt gaaatcctac ctgatttatt ggtaaaaggt ggtgattaca agccggaaga
    23461 gattgccggc agccaagaag tatgggcaaa cggcggcgat gtgcgagtat tgaactttga
    23521 aaacggctgt tctaccacta atgtgatcaa gaaaattcaa gcactataat ggtaataagc
    23581 gaatggcgag agaaaaaatc attattgata ccgagcaatt tcagcgcaca atatctcgta
    23641 tttcacatca aattattgaa aaacacggtg atttgcaaga tgtagtgatt gtcggcatca
    23701 aacgtcgagg agctgaaatt gccgagttaa tccaaaaacg cattgaagat ttagctcaaa
    23761 cacgcttgcc ttatatggcg ttagatatta cgttctaccg tgatgaccta gacttaattt
    23821 atcaagatcc cgtatttatg ggagccgata atcagctaaa tctgaacggt aaaaaagtga
    23881 ttttggttga tgatgttctg tttaccggca gaaccattcg ggcggcactt gatgcactct
    23941 tagattttgg cagagctgcc agaattgaac tggtgatttt tgtcgataga ggtcatcggg
    24001 aattgcctat ccgagccgat tatgtcggaa aaaatattcc aacggctaaa aacgagcaaa
    24061 ttcaggtgca aacgctctcg tatgatggga ttaaccaagt ggtcttagtt cctgctgcca
    24121 ataaagaaag tgcttaaatt aagtgaacct tttcgctaaa cttatctcta aggaaaagtt
    24181 actgcttaat tacctccatt aggattgtta taaaaatgaa attagtcaaa tcattatttg
    24241 ctgttgccgt tgcaacaatg agtcttaccc aaaccgccca cgcatttgaa gaaagagtgg
    24301 tggcgttagt gaatgatacc cctattatgc aaagccaggt tcaacgtgtg cttggcaaga
    24361 aaaaggcgac agaaactgct caacgtgcgg ctattgatca agtgattgat gatatgttgg
    24421 tgcaacaggc aatgaaagaa gccggcgtta aagtcagccc agctgcggta aaccaagcgg
    24481 ttgaaaatgt agcaattcaa aacggcatta cttacggtca gttattagat gcgttagatt
    24541 atcaaggtat tacacttgaa caattcaaac gtaatattgc tcaacaaatg gcaatggaac
    24601 aagttcgcca tatcagcatt agcaaatcga ttcaggttgc accacagcaa gtgcaagctc
    24661 tggcgaaaga gttaatggcg aaagataaag cagcaggcaa attgaaaacc gtttctggca
    24721 aagagcatcg cattagtcat attttgctca aaaccaaccc gattttaaat gatgctcaag
    24781 ccaaagcaaa acttagcagc ttaactactg atattaactc aggcaaaatc agctttgaag
    24841 aagcggcaaa aacccattct gttgattatg cctcaggggc agacggtgga gatttaggtt
    24901 ttaacttctt agaaatttac gatccggcat ttgcgaatgt tgcatcaaaa atcaaaccaa
    24961 accaaatttc tgctccgttt aaatcgcaat ttggttggca tattttaaaa gtcaccgaca
    25021 ctcgtaacgg agacagaacc gaagatgctt accaccaacg tgcttatcag caactggtga
    25081 acaagcaagc cgaagaagcc tctaaagatt gggtaaaagc gcttagaaaa accgccaata
    25141 ttcaatatgt cggtcaataa ttaaaatttt taagaacctc gcataatgcg gggttctttt
    25201 cttatttcaa aaaggataac aatgagttct acaaattcca aaaaacattt aggtcatacc
    25261 gctcgtaagc gtttcgggca aaactttttg cacgatatga acattattca cagcatagtt
    25321 tcagccatta acccgaaaaa cggacaattt ttattagaaa tcggtccggg tttaggagca
    25381 ttaaccgagc cggttgccga attggtagat aaactcacgg tggttgaaat tgaccgtgat
    25441 ttagcagagc gtttacgcca ccacccgttt ttaaaccaaa aactcaccat tattgagcaa
    25501 gatgccctac gctttaattt ccgtgactat tttaaccaac tcaacttaga cgaagactcg
    25561 gtgcgtgtgt ttggtaactt accttacaac atttctacgc ccttgatatt ccacctgctg
    25621 acctttcacg acttaattca agatatgcac tttatgttgc aaaaagaggt ggtgaaacgt
    25681 ttatgtgccg cgccaaacag taaagcatac gggcgtttaa ccattatggc tcaatactat
    25741 tgccaagtaa ttccggtgct ggaagtgccg ccaaccgcct ttaaaccggc accaaaagtc
    25801 gattctgcgg tagtgcgttt agtgccttat aaccaactgc cttatccggc aaaagatgtg
    25861 tattggctca atcgggtcac gactcaagcc tttaaccaac gccgtaaaac cttacgcaat
    25921 gctctttcaa ccctgtttag tgcggagcaa ctggacgcct taggcgttga tttaaccgcc
    25981 cgagcggaaa accttaccat tgccgattat gtgcgtttgg ctaactggct acacgacaac
    26041 ccgccggcaa ttgatacaac cgaagaattg gttgatgaag attgctaatc aataaattac
    26101 aagcggtcat ttttctacca agatttgcaa atctttagtg aaaaatggcc gcttgtttaa
    26161 atcagcttta cttgttttgc tgttacttag ttttgatgtt acttggtgcc gaaaatttta
    26221 tcccctgcat cgcctaagcc tggaatgata tagccgtttt cgtttaagtg actatcgatt
    26281 gaggcggtgt agagttcaac atctgggtgg gcggcttcta atactttaat cccctctgga
    26341 gcggcaacta acactagcac tttaatctgc ttacagcctg cttttttcag gaggtcaatg
    26401 gttgctacca ttgagccacc ggttgcaagc attgggtcgg tgataatggc taaacgctca
    26461 tcaacatcgt tggctagttt ggagaaatac ggcacgggct ttaaggtttc ttcgtcacga
    26521 taaatcccaa ccacactaat tctggcactt ggaatatgct ctaacacacc gtccatcata
    26581 cctaagccag cacgcagaat cggcacaaca gtcacttttt tgcctttaat tcgctcaacc
    26641 gcaattttct ctccgctcca gccattgatc tccacacttt ccatttccag atctttggtt
    26701 gcttcgtaag taagcagact accaatttca ttcgctagct cacggaaatc tttggtgctg
    26761 atttccgctt cacgcattaa gcccaattta tgctttacaa gtgggtgttt tacttcaaca
    26821 attttcattt taagctcctt aattagtgta atttaagcct tattcacctt tgctaattct
    26881 tcgtctctta acactcggcg aagaattttg ccgacattac tttttggtaa ttcgtcacgg
    26941 aattcgatgt ctcttggaat tttgtagccg gttaagaatt gacgacaata ggttctcaat
    27001 tcatctcgag ttaaactttc atcttttttg gttacaaaaa ttttaatgct ttcgccggaa
    27061 gcctcactcg gcacaccaat cgccactact tcattcactt ttgggttttg ggaaatcact
    27121 tcttcaattt cggttgggta cacattaaaa ccggagacaa taatcatatc ttttttacga
    27181 tcaacaatgc gtaagttcag atcatccccc attaccacaa tgtcaccggt tgccatccaa
    27241 ccatcttgta gcacttgtgc cgtttcatca ggacggttcc aatagccttg cattacttgc
    27301 ggccctttca ccaccagctc gccccgttcg ccgagtggta cttctttgcc ttcatcatcc
    27361 acaatacgaa tgtcagtatt tggcactggc acgccaatag agccggaata ttccaccgaa
    27421 tcgccacggg ttgcactaat cagcggagaa cattctgtca ttccataacc ttcgataata
    27481 tgtacgccgg ttaaatcgtg ccagcgtttt gccacgctag attggatcgc tgcaccgcca
    27541 cctacactta attttaggtg tgaaaaatca acctctttaa aactttcgtg attaagtaat
    27601 gcattaaaca atgtatttac cccagtaatc actgaaactt tgtacttttt taattcttta
    27661 ataaagcctg gaatatcgcg cggattagta attaataatc cggtaagtcc taattcgata
    27721 aagagcaagc aattcatcga aagtgctaag acgtgataca gcggtaaagg taccaatcca
    27781 atcatattgg cagaattacc caacaatggc tcaacaatcc attttgcctg catcatatta
    27841 gcaattaagt tttgatgagt cagcattgcc cctttcgcta cacctgtagt accgccagtg
    27901 tattgtaaaa aggcgagatc ttggctgaca atattcggtt ttacatattg acgctgtttg
    27961 ccaatgctta aggcttcacg gaagctgacc gcatgtggca atttatattt cggcactaat
    28021 tttttgatgt atttcaccac aaaattgact aaggtgcgtt tgccgaatga aagttggtcg
    28081 cccattcggg tcaaaataac gtgcttaatc tcagtattaa agacaatttt ttctaaggta
    28141 gccgcgaagt tcgagactat cacaatcgct ttcgcaccac tgtcatttaa ttgatgttct
    28201 aattcacgcg gcgtataaag cgggttgaca ttcaccacca caagcccggc acgtaatgcg
    28261 ccaaataaag cgatcggata ttgcaataaa ttcggcatca tcaatgcgat tcgatcacct
    28321 tttttcaggc gtaattcatt ttgcaaataa gcggcaaacg agcggctacg ttcttccaat
    28381 ttacggaacg ttaaaacctg ccccatatta atataagctg gaatatcagg gtggcgttgt
    28441 atcgctgctt caaacatttc cactaaagat tcatattgat ctgtttcaat cgtttttggt
    28501 gaataaggcg gataattatt tagccatatt ttttccatta tagtctccta aaaccttacc
    28561 taaaaagata ggtgaaaaat ttgcttgttt gctgtgttta tgaatcaatt ttcttacagc
    28621 ccagaatgtt atacctgttg aaagcaacat tataaataaa acaataagct catttgcaaa
    28681 aaattgcgaa aatccgaccg ctgtcatcac aagaaccagc agaggaatgc cataaattaa
    28741 aaacacgctt ttgagcaaga tattttcagc taaccctagt tcaaccttat cgcctacttt
    28801 taggggttca tctacctcaa tacgaaaacg agggtcaatt ttttcacctg ctaatgctga
    28861 taatgctttg ctgccacaag cagactgagc tacacagcca ccacagctac ttttagcata
    28921 acattgtaca atagccacac cattctgata ttccaccacc gtagcctgtt cgatcatcat
    28981 ggctgagctc cttccttaaa accaatattg ttcataattt gcttagccga ttgcaacggc
    29041 acatcaccaa taatcacaat atctctatca ttaatcgttt gatttaaaat cgttaattta
    29101 ccttgttgcc aagcgtactc attaaaactc acgccttggc taggcataat ataaatagtt
    29161 aatgtagata aaccatcact atatactctg ctatctacat actcactttc cacttgatat
    29221 gtcgcacctg tgactgtttg ttgctgaatt aacctaaacc ctgtcggcaa ccacttcacc
    29281 tgccaaccat cagacttagg aaattcttct tttttcactg tcgttaatgt tggtaacatt
    29341 agtgattcta ttacatttgc aatcctatcc aattctggag attgataaag ttgcaaaact
    29401 ctgaattctt ctaataccaa attatccata ttcaagactt ggcttttaag taataaatgt
    29461 gtttcttcat caatccatag tatataggca tatcttaaag tatcatttgg cttcatacga
    29521 attacctttg taattcggtc agaaatacga tctttaccag catctaaaaa ggcataacct
    29581 tttaaatttg cataatctgt gtaaagtaca ttagggaggt tatctaaaat ctgtgaacta
    29641 tttaaactaa aaggacgaaa attatacccc aaatagctga ccttgttatt ttttaaaata
    29701 atttcttctc ggctgtgatc taaattcagt aattgggcat attctttatt atgggtaaaa
    29761 gcatgacgta aacggaaaga ttctgtatca cttccctgtt gaagaatata aactaattca
    29821 taagtggatt ttttatgtgc ttctgacata gccgttaaat atg
//
LOCUS       DANLXB010000004        29257 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLXB010000004 DANLXB010000000
VERSION     DANLXB010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29257
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            44..262
                     /locus_tag="PXD41_000104"
     CDS             44..262
                     /locus_tag="PXD41_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6287677.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            272..2242
                     /locus_tag="PXD41_000105"
     CDS             272..2242
                     /locus_tag="PXD41_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6287678.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2422..2910)
                     /locus_tag="PXD41_000106"
     CDS             complement(2422..2910)
                     /locus_tag="PXD41_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287679.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            2942..3043
                     /locus_tag="PXD41_000107"
                     /pseudo
     CDS             2942..3043
                     /locus_tag="PXD41_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transposition protein"
     gene            3040..3279
                     /locus_tag="PXD41_000108"
                     /pseudo
     CDS             3040..3279
                     /locus_tag="PXD41_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005688575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3282..3551
                     /locus_tag="PXD41_000109"
     CDS             3282..3551
                     /locus_tag="PXD41_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6287680.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            3545..3892
                     /locus_tag="PXD41_000110"
     CDS             3545..3892
                     /locus_tag="PXD41_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6287681.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            3919..4071
                     /locus_tag="PXD41_000111"
     CDS             3919..4071
                     /locus_tag="PXD41_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287682.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            4071..4406
                     /locus_tag="PXD41_000112"
     CDS             4071..4406
                     /locus_tag="PXD41_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL6287683.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            4408..4704
                     /locus_tag="PXD41_000113"
     CDS             4408..4704
                     /locus_tag="PXD41_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287684.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            4727..5299
                     /locus_tag="PXD41_000114"
     CDS             4727..5299
                     /locus_tag="PXD41_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL6287685.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            5299..6855
                     /locus_tag="PXD41_000115"
     CDS             5299..6855
                     /locus_tag="PXD41_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL6287686.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            6974..8428
                     /locus_tag="PXD41_000116"
     CDS             6974..8428
                     /locus_tag="PXD41_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL6287687.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            8421..9698
                     /locus_tag="PXD41_000117"
     CDS             8421..9698
                     /locus_tag="PXD41_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6287688.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(9900..10244)
                     /locus_tag="PXD41_000118"
     CDS             complement(9900..10244)
                     /locus_tag="PXD41_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287689.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            10308..10772
                     /locus_tag="PXD41_000119"
     CDS             10308..10772
                     /locus_tag="PXD41_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6287690.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            11007..12122
                     /locus_tag="PXD41_000120"
     CDS             11007..12122
                     /locus_tag="PXD41_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL6287691.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            12153..13079
                     /locus_tag="PXD41_000121"
     CDS             12153..13079
                     /locus_tag="PXD41_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL6287692.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            13148..13429
                     /locus_tag="PXD41_000122"
     CDS             13148..13429
                     /locus_tag="PXD41_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287693.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            13429..13863
                     /locus_tag="PXD41_000123"
     CDS             13429..13863
                     /locus_tag="PXD41_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6287694.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            13869..14366
                     /locus_tag="PXD41_000124"
     CDS             13869..14366
                     /locus_tag="PXD41_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL6287695.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            14451..15836
                     /locus_tag="PXD41_000125"
     CDS             14451..15836
                     /locus_tag="PXD41_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL6287696.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            15847..16362
                     /locus_tag="PXD41_000126"
     CDS             15847..16362
                     /locus_tag="PXD41_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6287697.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            16458..16772
                     /locus_tag="PXD41_000127"
     CDS             16458..16772
                     /locus_tag="PXD41_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6287698.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            16769..16921
                     /locus_tag="PXD41_000128"
     CDS             16769..16921
                     /locus_tag="PXD41_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6287699.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(16900..17202)
                     /locus_tag="PXD41_000129"
     CDS             complement(16900..17202)
                     /locus_tag="PXD41_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287700.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            17250..19907
                     /locus_tag="PXD41_000130"
     CDS             17250..19907
                     /locus_tag="PXD41_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6287701.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            19917..20840
                     /locus_tag="PXD41_000131"
     CDS             19917..20840
                     /locus_tag="PXD41_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287702.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            20824..21051
                     /locus_tag="PXD41_000132"
     CDS             20824..21051
                     /locus_tag="PXD41_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6287703.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            21044..22108
                     /locus_tag="PXD41_000133"
     CDS             21044..22108
                     /locus_tag="PXD41_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287704.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            22095..22631
                     /locus_tag="PXD41_000134"
     CDS             22095..22631
                     /locus_tag="PXD41_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6287705.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            22686..23048
                     /locus_tag="PXD41_000135"
     CDS             22686..23048
                     /locus_tag="PXD41_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6287706.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            23058..24161
                     /locus_tag="PXD41_000136"
     CDS             23058..24161
                     /locus_tag="PXD41_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6287707.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            24154..24720
                     /locus_tag="PXD41_000137"
     CDS             24154..24720
                     /locus_tag="PXD41_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287708.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            24730..27009
                     /locus_tag="PXD41_000138"
     CDS             24730..27009
                     /locus_tag="PXD41_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL6287709.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            27010..27612
                     /locus_tag="PXD41_000139"
     CDS             27010..27612
                     /locus_tag="PXD41_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287710.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            27596..27871
                     /locus_tag="PXD41_000140"
     CDS             27596..27871
                     /locus_tag="PXD41_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287711.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            27871..28158
                     /locus_tag="PXD41_000141"
     CDS             27871..28158
                     /locus_tag="PXD41_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287712.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            28168..28332
                     /locus_tag="PXD41_000142"
     CDS             28168..28332
                     /locus_tag="PXD41_000142"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287713.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            28325..29029
                     /locus_tag="PXD41_000143"
     CDS             28325..29029
                     /locus_tag="PXD41_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287714.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
BASE COUNT         9034 a         5928 c         7006 g         7289 t
ORIGIN      
        1 catttaagta gtttctaaaa ctaactttca aggatctcac aaaatggcaa gaaataaaag
       61 agttcgagat atgagtaatt tcgaaattcg tggtgagctg atgaaaatcg gtaagtcctt
      121 atctcagtta ggtattgaga atggattagc aaaaaccaca gttcgtaatg cgttagataa
      181 gccatatccc aaaggggagc aaattattgc aaaagcgatt ggtaaaacac cgcaggaaat
      241 ttggccctct cgttacgaat aaggagcttt tatgaaggaa tggtttttag ccaaagaaat
      301 cgcaggatta tctggagttc cagaattacc gaatagcgtt tcaagattgg caaccaaaga
      361 aggatggcaa aaacgacaaa ttcaaggtgt aagaggtgtt acttacgaat accacctcac
      421 cagcctaccc attgaaaccc aacaacaact tagactaaac gccgcccttg cggtaatacc
      481 gcaagcggca gaactacaac ccaaacgaga cgaccccgca cttatcgcaa ggctcaataa
      541 tgccaccgat aaaggcaggg ataaagcaaa aggcaaggca gaagcctgta tgcagttgca
      601 agcctttctc gaccaagggt ttagttatac gcaggcagaa gcgggagcgg caaccgctaa
      661 aaatgtgtcg caaggttctt taaaaaattg gtactacaaa gtgaaaggtc accccgtcca
      721 tttatggcag gcgatcttaa tttccgaaag cggtaggagt aaaaagccgc agctgaaagc
      781 caagattact gaagaagcgt gggactgctt tttggcggat tacctccgcc ctgaaaagcc
      841 ggatttacgg gcaagttacc gccgaaccca agccatcgcc aagcaatacg gctggcaaat
      901 agcaagttta cagactttcc aacgccgagt gttggcggaa gtgccttacg aggtgatttt
      961 gctcaaacgg gaaggagcaa atgcggttgc caagttagtg ccggcactac aacgcacggt
     1021 gaaagatatt ctcgcaggag aatggattaa cggcgatggc tatcaacaca atgtgtttgt
     1081 gaaatggcac accggcgaga ttgtccgccc taaaacgtgg ttttggcaag atgttcgcac
     1141 ccgcaagatt ttaggttatc gaacatcgat ttcggagaat actgacagca tacgccacgc
     1201 attaatggat gtgattttta acgtaggcat accgaaaacg ctcacgctgg ataacacccg
     1261 agcagcagcg aataaggcaa tgaccggtgg tattgaaaac cgctaccgct ttaaacatac
     1321 cgagttagac ccgaaaggca ttatgccgat tttagggatt gatgtgcatt ttacctcaat
     1381 tctttatggt gaaggacacg ggcaagccaa gccgattgaa cgtgctttcg ggcgaggcgg
     1441 aattggcgag aaaatagata aacgccctga attaagtggt ttctatacgg gcagaaatgc
     1501 acaagaaacc cctgataact ataacggcgg taaagacggt gtggattaca acacattctt
     1561 gaaagccata gcagcaggga tagaagagta caactctcaa accgaacgcc ataccgaaat
     1621 gtgccgagga gaattgagtt ttaaccaagt ttgggagcgg gattaccacc caagcaacgt
     1681 aagacaagcc agccctgaac agttgcggtt actgttctta caggcagaaa cggtcagcat
     1741 taaacgcaac ggcagtttta cgctgaaagc agccggcaaa ctttacggct taactaacgt
     1801 ttactgggca gaaagcctga tagggataac ggataagaaa gtagtggcac ggttcgaccc
     1861 cgatgactta cacggcaacg tgtatgtgta caacctagag gggcaattct tagccgaagc
     1921 ggtttgccga gaggcgaaag gatttggtga taccagtgca agccgtgagc aaggtcgctt
     1981 atatcagaaa gtagtgaaaa gtgccaaagc tcaagccgaa gcccttgaat tactggaagc
     2041 tcacgaactg gcaagcctcg ccccacaagt ggacgtgcct gagccgatag agaagaaggt
     2101 aaaagaggtg ctggtgaaag aagattttat cgtggatttc aacactgtgc gtaaagcaac
     2161 ggtggtggaa gaaaccgaag agatcagtat ttttgatgaa gtgttactga aacaagagaa
     2221 acaacttcgc atagtggaat aactagcggt cagtttttgc aaaaaatttg caaatttttc
     2281 taaaaaaacg accgcttgaa atgagattta aacagggttt aaacgccttt aaggagtaaa
     2341 aaatgacatt aacagggcaa gcttaccgag tgattttcaa ggaactcaaa gagcaacaag
     2401 agagtgaatt tgaacaggct ttcaagaaag ggattgccaa aattcagcag aatcaaactc
     2461 aggaatccat tctggtaaac cgtgatatgt ttcaagctga aaagctaaca ctgctttcac
     2521 aaaagttgga agcggttgag caattacttc gccttgaatt aaatcagccg aattttcaag
     2581 caaaacttga agactacgct gacgcattac gaacaaccat tttaagtaaa gtagccaaat
     2641 aagagcttta gactcttgaa ggcttaacat ctgagccact ttttttactg tcggcattat
     2701 accgtcaaga tcatcaatag aagttaaatg atgaaaagag gaatggtatt cagctaaaca
     2761 aaaattgatt gtactaagtt taaacaaagt aatgcaattt ttcatcacga tggcatttgc
     2821 tcgttttaac ttaaaaccag agaaggttgc acgagcagaa tcaagggcta tttgatgaat
     2881 ttcatcatct gttaaagaac gaaagagcat aaaaacctcc aaacaaaaac aggacaccat
     2941 tatgacatta atcgaccaaa ttaaacaaca catcgccgaa agcggcagtt ctcaggggaa
     3001 agttgccaaa gaagccggga ttaatgccgg ggcgttatcg gctttggtaa tgctagtcgt
     3061 atgttacagc gtgcagtagg cgtagcggat gatggcatta ttggcaatat taccctgcag
     3121 gcaattaatg caaaatctga aagcgatctc ttaatgctat ttaatgccga acgtctgaag
     3181 ttttacacaa aattacgcaa cttccccact tttggtaagg gttgggtcaa tcgtgtggca
     3241 ggcaatttag aatacgcagc acaagataat gaggtttaaa aatggcaaaa ctatttaaag
     3301 aactactctc aaccaatggc acattatcca ccactagcac cgtgcagttt tttggcacat
     3361 tgtgtgtatt tggtttaatg gtttatgcag taattaccca acaaccttat gccgaaagcc
     3421 tattaaataa tgtgttgatt tatctttttg gggcaactac cgctaagggt gtagtaacca
     3481 gctatcaagc caaaattaaa gggggtatcc ataaacaaca aagtacattt aaagaggagg
     3541 agggatgtta atgcaacaaa ttttaggcgt gattggcgtc atcgcagcaa tattgtctta
     3601 tgctttgttt aaaagctggc aactaaaacg tgagcgtaaa aagaatgcca tattacaagc
     3661 tgaaaaacag caacaagcgg ttgaaattga gcaaaaaaaa gcagaggtaa aatatgtgta
     3721 tatatcaaag aaaaacaatg aaaaagttac tcgcagctct gctagcgata ttgatgacaa
     3781 gttgcagcaa cacggttact tccgtgacaa caacaggttg cacggcgttc agtctgattt
     3841 atccgaaccg tgcggatacg ctggaaacga aacgtcagat tcttgctcat aatctgactt
     3901 ttgaggaaat ttgccaaaat gaaatacatt aaaaaattac gtaaacgctg gcaaatttgg
     3961 cgttttttaa aaaatcatcc tgaggttgca caacgccgag atttattagc gattgccatt
     4021 aaacagggcg tagaaaaccc tgtagggcgt gcaagacgga gggagccata atggatttat
     4081 ttacagtctt ttgggagtct atccgtgcta actttggttt tatttctgcg ttactcacca
     4141 ttgttgttac ggcattttgg ctcaagctag atagcaaata cgccaagaaa aatgatcttg
     4201 gtgaattgct ggaaattgcc aaaagccacg ataaccgctt aaccacctta gaaaccaagg
     4261 tagaaaacct gccaagtgcg gtggacgtgg aaaagctgaa aaccttagtc actgatgtaa
     4321 aaggcgatac caaagccacc tcaaagcagg tggatagtat cagccaccaa ctcggcttgt
     4381 tattagaagc aaaattaaag gaatgatatg tcgttaagag atttactcac tcaagaccaa
     4441 cggctggtga ttttacgctc attagcggaa gccggctatg atgccaatga gtcaattatt
     4501 agtgattgcc tagatttata cggtcacgat attagccgtg atttagttcg cacccattta
     4561 agttggcttg aagagcaagg cttacttacc ttagaacgtt tgcgagatgg ctatatggtg
     4621 gcaagcatta cccagcgtgg cttagatgtt gctcaagggc gtgttgtggt aagtggcgtt
     4681 aaacgccctc gccctaaaat ttaaacggta tttaaggagc gtttaaatga gcgagaaaaa
     4741 tactcgtggt cgagcatcaa aagtcgattt actgccgccg aatattaaaa cccaactggc
     4801 gatgatgttg cgtgataagc agtactctca gtcacaaatt ttagaagaaa ttaatgactt
     4861 aattcgggat tgtggcttgc ctgatgaaat gctgttaagc aaaaccggat taaaccgcta
     4921 cgcaagccgt atggaacgct taggggcaaa aatccgtaat gcccgggaag ttgccgaaat
     4981 ttggactaag caattcggcg aaatgccaca aaccgatatt ggcaaaaccc taatggaaat
     5041 ggtcaagcaa attgcctttg aaacctcatt gaaattaggc gaacaagaag gcggtattga
     5101 gccaaaacag cttgctttgc tctcgtctgc tattcaacgt ttagaacaag ccgaaagttt
     5161 gagttttaaa cgggaacagg caatccgtaa agaggtcgca caacaagccg ctgaaaccgc
     5221 tgaaaaagtg gtggtgcaag cgggtttatc cgctgaaacc gtccgtacga ttaaagagca
     5281 aattttagga attgcataat ggcactactc aataacagac cgctgaatga attagcccct
     5341 gaatgccgtt cgtttttaga gagcattcac gcttttaatc ctaacgaact gttattgggc
     5401 tatcaaaagc ggtggattgc ggacgacagc caactcaaaa ttgccgaaaa aacccgccgt
     5461 tgcggtttaa cgtgggcaga agcagcagat aacgccttaa tcgcaagcac ccgcaaatca
     5521 gacggtggct ctgatgtatt ttacattggc tcaaataaag agatggcacg tgaatatatc
     5581 gatgctgtcg caatgtgggc aaaagccttt aatcgtgtgg ctggagaaat ccaagaagag
     5641 atctttgaag acgaagataa agacatctta acctatgtaa tctacttctc atcgggtttt
     5701 aaggtcaagg cattatccag taatccgaaa aacctgcgtg gtatgcaggg cgtggtggtg
     5761 attgatgagg cggcattcca cgaatactta gcggaagtct tgaaggcggc gttagctctc
     5821 acaatgtggg gggcgaaagt ccgtattatt tcgacccaca acggctcgga aaatctgttt
     5881 aatgaactga ttaccgatag ccgtgccggc cgcaaacgct actctgtgca tacgattacg
     5941 attgaagatg cctgccgtga tgggctatat caacgtatct gccaagtagt gacgaaaaaa
     6001 acgtggtcac cggaagcaga aaaagagtgg attgaaaacc tactcaacga caccgccagc
     6061 gaagaagacg cattggaaga atacttctgc gtaccgaagt tcggctcagg cttatggctc
     6121 tctcgtgctt tgattgaacg gcagatgagc gaagccacgc ctgttatccg ctttacggca
     6181 aaagatggtt tcagccttgt ggctgaaccg acacgctatg cggagattgc cgaatggtgt
     6241 gaattagaac ttgagccgat attggcaacc cttaaccctg atttgttgca ttttatgggc
     6301 gaagactttg cacgcagcgg cgatatgacc tctctggtgg tgcttgctca gcaacaaaac
     6361 cttgttcgta aagtcgcctt tattgttgag cttggcaata tgccctacaa gcaacaagag
     6421 caaatcgtga tgtttatgct taaacgctta ccgcattttg ccggtggggc ttttgacgcc
     6481 cgaggcaatg gtggctattt agccgaagct gcacgagatg aatttagcac cttgattgac
     6541 tgcgtgcagt tatcggaaaa atggtatcgg gaacacaccg ccccctttaa agcggcattg
     6601 gaagacggcg agctggaagc tattccaaaa gatgcggata ttttggctga tttgcgttca
     6661 tttcaggtgg tgaaaggcgt accacgcata ccggataaac gcactaaaag tgcagatggg
     6721 aaaagcaaac gacacggtga taccgcaatt tctttgctgt tggctcatta tgccagccga
     6781 caattagtgc aaatgccagt tgagccggta tcacgccgtc cacgccatag ccaacaatta
     6841 acagaaggat attaacaaat gagatatgta ccactttgtt taatgatgtg tgcctcattc
     6901 tacctattta ttaacaacat tgacggctgg ggttggggaa ttcttttatc ttttatttta
     6961 gcgagtgcag cttatggcaa agaagaataa tttaattagt gaaattgcca cccgtgccag
     7021 aagtattgat tactgggcat ttggctatta tctgccgaac cctgacccga ttttaaaacg
     7081 aatggggaaa gatatttccg tttaccgtga gttgttatca gacgggcaag ttcgctcagg
     7141 cgtacgccgt cgaaaagcgg cgattaaagg cttagagtgg cgaattacca ccactaacaa
     7201 tgagaaagtg gacgagcaga tttatcaaat atttaaccgc ttgccgatga ataacctgat
     7261 taccgaaatg ctcaatgcag cactctatgg ctaccatatc agcgaggtta tttgggcaaa
     7321 agagggtgag ttatttgtgc caacagaaat cattggtaaa aagcctgaat ggtttatgtt
     7381 tgacgacgaa aacctactgc gtttccgtac caaagaaaac tgggcggacg gcgaattatt
     7441 accagatgat aagttcttgc ttactacgca agaagccacc caagataatc cctacggttt
     7501 aggcgattta tccctctgct tttgggcggc gacctttaaa aaaggcggtt tcaaatactg
     7561 gttggaattt accgaaaaat acggctcacc gtggttgatt ggcaaacacc ctcgccaagc
     7621 tcacaataca gataaagagc gactagctga tgccctagag ggaatgatta gctcagcgat
     7681 tgcggttatc cctgaagata gttcggtcga aatcaaagat gcagcgggca aatctgccag
     7741 caccgatgcc tttgaaaagt tcctcaattt ttgcaaggca gagatcaata tcgccctact
     7801 tgggcaaaac caaaccaccg agcaagaaag caaccgtgcc agtgcacaag taggcttgga
     7861 agttatggaa gatattcgct cggacgacca agcgatgatt gaagccacct tcaacacctt
     7921 gttgcagtgg attgtgaaat ataacttcaa tgtggaacaa ctgccgaagt ttgaatttta
     7981 cgagcaagaa gccatcaaca ccgaccaagt tgaacgagac agtaaactcc acgcaatggg
     8041 cgtgcgtttt tccaaagcct actttgagcg tgaatatggc tttgaggcgg gtgatattga
     8101 ggtgcaagcg gtcgaaaaag cggaaaaatc tgcaaatacc acagaattta gcgaaggaca
     8161 acgccgaacc caagtgccaa tgcctgtgcc aattttggaa cagctagaac acgagggaga
     8221 agcaatggtg gacgattggc tacaaggggt gagagataaa ctcgctcaag cagatagtct
     8281 ggaggatttc caaagtcagc tagatagcct tatccctgaa ttaagctttg ccgaatatgg
     8341 cgagctgttg gcgttaggct caacggtggc agagcttgca ggcagacaat cggtaaacga
     8401 tgaaattaag gcaaaacgca atgcgtaaat ttacctttaa acagcaagcc caatattttg
     8461 agaaaaaact caatctccgc acgaatagct accttgatat tctgggcgaa gagcacgact
     8521 attttttcgt ggtggctggg gcgaatcgta atgaagtgtt gagtgagttt cgcaaggcgg
     8581 tggatgaggc tattcacaac ggcgaaacct tagagaactt tcgcaagcgg tttgatgagg
     8641 ttgtggcaaa aacaggctgg gagtacaacg gcggacgaaa ttggcgaaca cggattattt
     8701 acgataccaa tgtttacggg gcgtataacc gtggacgttt gcaacaacat ttagagcttg
     8761 cggaggatat gccttattgg gaatatcaac acaacgacaa cgcccaccct cgcccacagc
     8821 acgtggcgtg ggacggcttg gtgctgcgtt atgacgatcc gttttggaaa tatcactatc
     8881 caataaaagc ctacggttgc cactgcaccg tgcaagcgtt agatgatttt gacctcaagc
     8941 acgatggtaa aaccgtcagc ccaccacctg aaattgagtt tgaacaaaaa acggtaggcg
     9001 tgcggacagg caattcacga gtcgtaactg tgccgaaagg ggttgatgtg ggttttacac
     9061 cgcataattt tgataatctc aaagccggga gagcagcaaa tgtagataag ttgctaatgc
     9121 aaaaaatggt taccgccgat cctatatttg cctccaaagc agtcagtgat ttattggcaa
     9181 aagagccggt tgcaaagtta cataaccaag cctttaaaaa ttgggtaaat gatgttgcca
     9241 atgctaaagg aagtgcatta tcccaagtag agaatatgca gttgttaggg gtactacctg
     9301 ttgcggtgat tgaacggtta cagcagatca atttagctcc gcaatctgca attattgcaa
     9361 taacaaaagg cgatatggta cacgctctac gagagctaaa acaaaatacc ggtattgccg
     9421 taccgttgga attttgggaa aagttgcctg caaagttaca atacccaaat gccatcttgt
     9481 tggaaaaaca acaagcagaa actacattgc tctttatcta tgacgtagct caaaccaaaa
     9541 ttgccgtaaa agtcaattat gatgcaactt tacaagatag acacggagca aaaggacggc
     9601 agaaagtctt actgaatcga gcggttacag gtagtttatt ccaagataca actggattga
     9661 aaagttcaaa gtatgaagtg ctattgggag aaatgtagcg gcgaaggact cgaaccttat
     9721 aatgtaggtt aaacctacaa cctttaccaa ttaggaaact accgctacat tgtgtaaatt
     9781 cactataccc ctaaattatt ttttaatcaa taggagaaac aaaatggcag aaaaacaact
     9841 ttcctttaaa gtagccgaaa tagtgccaat gtcagctatt aacactatgc ggcacttaat
     9901 tagtttggca ttacaagcga attatgagag agaaaaatct cgtgcttgat aatttcaatg
     9961 gcttgtagtt cgggaactat attatctgaa acaagccatt gttttgttga tgtcagacat
    10021 ttagcgatga aatccataat taaaccatta gcagtagctc gttgttccgg agtaagttgt
    10081 aaccacgacg cctctgtttg ttggtctaat gtataaagaa acataacggc ttctttttct
    10141 gataatgggt caagtggtaa tttttcagct tttgtgacta accattgacg ggaaagcaat
    10201 aaatcataaa ccagttctat tgcttgttct gcatttacca tcatattcta attccttaat
    10261 atatcagggc aacattaccc aatctatatt ttactgagat ttgcttaatg atcaaaatca
    10321 ccctcaacaa cacccaagcg gtcaaatcgt tacaacaaat tgcaaatcag ctggaacaac
    10381 ctcgccgact gtatggcatt ttaggggaaa ccctaaagaa aattcacact gcacgcttta
    10441 aagcggaaca agaccccgat ggcaacaatt ggaaaccgtt agccagtagc acgcttgctt
    10501 taaaacgtaa acgaggtaag tccactaaaa tcttacggca agacggctac cttgccgata
    10561 aaacggctta caatgttaca agtgataatg ttgagtttgg ctcgcaggaa gtgtatgcac
    10621 ggttgcatca attcggcggt aaagccggac gaggcaaaaa agtgactgta ccggctcgcc
    10681 cgtggttagg cgtaggcgat aaagatgagc agttactttt acgcaaagct gagtggcatt
    10741 tagggcaaat tatcggtcgt atgggaaaat aaccgcttaa aatcaaattt aacgcataaa
    10801 aacgcctctg tgcgttttta ttttttattc gcctgattat tcgactcaaa aaatttaaac
    10861 gctgttaaac gcatttaaac ggtatttaaa cggtattgcc gattgtgata aatcctcttt
    10921 attaaaacac cctcgaaaaa tctttaaacc agtttaaaag ctaatttctc tccaaatcct
    10981 tattattgcc ccatcacgga ggcaatatga cccaaattga aatttttaaa gccggtaagc
    11041 gttatgacgc caacggcacg ttaattgaca ttacccctga aatgttgcaa cagaccgttg
    11101 ctgcctataa ccccgaattt cacgaagctc cgctggtgat cggacacccg aaatccaaca
    11161 accctgcgtg ggggtgggta aaagcccttt cccttgaggg cgatgtacta aaagcagaag
    11221 tagatcagct agacgctgag ttttcagaaa tggtggcaag cggcaaattc aaaaaagtct
    11281 cggctgcttt ttacttacct gatagcccga ataacccaca taaaggcgtg ttatcgctac
    11341 gccacgtggg gtttttaggg gcaatgccac cggcggttaa aggcttaaag caggtggaat
    11401 ttgcagaaga tgatgatttt gtcgtctttt ctgaatgggg ggttgcaagt ctatttagtc
    11461 gttttcgtga ttggttggtg agtgagttcg ggcttgaaaa agccgataaa gctcttcccc
    11521 cacacgaaat tgattggctg aaagaagagg caatgcgaag ccaaattagc aaacaggtac
    11581 acgccgaaca ggcaacacct gaaccgattt ttaatgaacc cgcacaacca gaaggagaac
    11641 ctgaaatgag tgcagaagag aaggaagagc ttgaacgctt aaaagcggaa aacgagcagt
    11701 tgaaagccga aaaagcccaa gccgaagcag agaaaatgga agcagagctg gaagctgaaa
    11761 aagctggtaa tgcagagttt tgtgaaggtt tagtcaagca aggcaaactt gccccggtgg
    11821 caaaagcggc gtttgtgcag gctttaaata acctttcagt attaaaagcc ggtcgtgagc
    11881 cggaatttaa tgagggcgaa gatgtggttt cacagtttaa gtctgcaatg tcgcaatcac
    11941 cacagattat ccaatttgga gaatatgcca cagcagataa agccaaccca caagaagcgg
    12001 aagcagtgga atatgctgaa ggcacagatc cagtttcgat tgaagccgac caaaaagtgc
    12061 gagcttatat gaaagcccac aatgtaggct acgctgcggc atttaatgcg atttatcgct
    12121 aatgtttaac ccacaactga aaaggaatac taatgacaac tcataactta caaaaactgc
    12181 gtgtacaaga ccccgtttta accgagctgg cacaaggcta tcacaataac gagctggttg
    12241 ccgagacctt aatgccgact gtcgaaatcg aaaaggaagc aggcaaaatc ccaactttcg
    12301 ggcgtttagc tttccgattg ccttctaccg tgcgtaactt gcgtggttca tctaaccgtt
    12361 tagatccaga agatattggg gcgattgatg tggcgttaga agaacacgat gtggaatatg
    12421 ccattgatta tcgtgaagag aacgaagcca ttttttcttt acgtcaattt gccttaaata
    12481 ccacccaaga tgtgattgcg ttaggtcgtg aaaaagcggt tgcaaccctc gccttagatg
    12541 aaagccgtta tgaaacagac aataaagtca cgctgtccgg caccagtcaa ttcagccata
    12601 aagatgctga tgtgtttaag gtatttgata ccgctattcg tgccgtgaag cgggctatcg
    12661 gtcgtaaacc gaatgtgtgt gtgatttccg gtgatgtgtg ggcagcgtta aaagaacatc
    12721 cggcagtggt tgaaaagctc aaatacagtc aagtagcgat tgttacccct gaggtgtttg
    12781 ccaaactgat cggcattgag accgtaaaaa tcggtgaagc ggtgtatgaa gaaagcggtc
    12841 agctcaaaga tatttggagc aaagatattg tggtggcgta tgttgctcct cgttcgaccg
    12901 gaggcaaagg cacggtttac gagccgtctt atggttacac ggttcgccgt caaaaaggct
    12961 tatttgttga tacttataaa gagagtggcg gcaaaattga agtggtacgc acgaccgata
    13021 ttcacaaacc tcatttagtg ggtgcggcag caggctattt aattaaagct gccgtataag
    13081 ccacatacca tagggtgcgt ttactaacgc accattatct caaacacatt acatagagga
    13141 aaaaacgatg gctaaattta ttgttttaca taccccaatt ttacacgatg gcaaacgcta
    13201 tgaggtgggg gcagaaattg aactcaccgc tgaacaagct gagaacaatg cgatcaactt
    13261 aaaagcggta gaagctgttc caaaaccacc taaaaatgcc tcaaaacctg aagatgagcc
    13321 aaaacccgaa ggtgaaccta agcctgaaga tgcagtgacg gaagatgatg tgaagctggc
    13381 tgaagcaaaa attgcagaag cagagcaacc aaaagggaat aaaaaataat gtatgtgcag
    13441 attgatgagc tactcacggc gtttagtcgc aagattgtgg tgcagctcag taatgatgaa
    13501 ccgacagcga ccgagcctga tttaaagatg cttgaaacgg cagttaaagt ggcaaatgag
    13561 cgaattgatg cagcgttacg ctctcgctat accttgccgc tggctgatgt gcctacgctt
    13621 attaatcagc acgcattaac ccttgcccgt tattggcttt atgcccgccg tcctgaaacc
    13681 aaaatgccgg acaccgtgaa ggaaacctac caacaagcgg tgaaagagtt ggaacagatt
    13741 gcaacaggca aactgcattt aggcattgct gaaagcagtc aaattttaga agacgatgtt
    13801 ttagccgata acagtgaata tgaagttcgg gcgaacgctc gcattgatac cagtcgttat
    13861 taaagattat gtcagccaca caaccgattt tagaagatat ttgccaacac ttgcggcaag
    13921 cattgcccga gtgggaggtg gaactcttcc cgaatgaccc aagcacctat catctctcgc
    13981 acattaacgg tgcggtgttg attagctatt tggcaagcaa atttgagaaa cctcgcacta
    14041 cacaagcggt gctgcaggtt cgccacgttc agattgcttt aacggtgctg acccgtgatt
    14101 tgcataatga tgtcggggcg ttggatttgc tggataaatt gcggttattg gttgtggggt
    14161 ttaagcctca aaactgcggt gagtgttggt tgattgatga attttttaat ggctcaagcg
    14221 aagaaaccgg gctttggcaa tatcagttga ttttgcaaac cgaaactcag caggtgcaac
    14281 accaagcggt cgaaaatctg ccaaaatttg taaccgctca tcttcgccgt caagaccagc
    14341 ctggttcgcc cggacttaaa acttaaatcg tagggtgcgt ttgctaacgc accatcaaca
    14401 tcacctgatt ttacggtgcg ttggcaaacg caccctacaa ggagaatatt atgacgtttc
    14461 accacggttc tgaaaccgaa cgagtaaacg gtggctctgt gccggtatcg gtggttgata
    14521 gtgccattat cggcattgtc ggtactgccc caatcggcgc agttaatgaa ttgaccgtct
    14581 gtttaaccaa aaaagatttt gccaaattcg gcacgatttt aaaccaaggc ttcaccttac
    14641 ctgatgcctt tgatatttta gctcgttacg cagcgggtaa agtgtatgtg gtgaatgtgc
    14701 ttgacccttc ccgccaccgt actaccgtga ccgatgaagt cctcacactg gatcgcaata
    14761 cgctgaccgc tcaaacagcg aaaaccggca ttattgcggt gacgagagtg aaagacggtg
    14821 caaacgtgct gaatgctgat cggtattcgg tcgatctgca aaccggcgtg gtgacctttg
    14881 tctctgcacc gtctgccccg aaaattagct atatctatgc tgacccgagc aaagtgaccg
    14941 aagaggacat taaaggcggg gtggatagct taaccggtaa acgcaaaggt tttgaactat
    15001 tgcgtgatgg ttttaacctt tacggtgcgg atgccaaaat cttaatctgt ccggaatttg
    15061 ataaaaccgc aagctgtgcc gctgcccttg ccacccttgc cgaccaactg cacgctaagg
    15121 cgtatattca actgccgaaa gggacgagct tatcaaaagc tattcaagga cgtggcccgg
    15181 cagggacgat taacgcctcg gcaagcaatg agaacgtacg ccatttcttc ccgtatgcgt
    15241 tggggtcaag caatactctt gaaagccttg cgacccacgc cgccggtttg cgtatgttga
    15301 ttgatgtgga gaagggctac tggttcagca cttccaataa agagctgaaa ggggtgatcg
    15361 ggttggaaat tccgctgacg gctcgggtgg acgataagca aagcgaaact aatctgctca
    15421 atgcggtagg gattaccacc attttcaata gttttggcac aggcttccgc ttatggggca
    15481 accgttcgtc taacttcccg actgtgaccc atatcagcaa ctttgaagtc gcctctcgca
    15541 caggcgatat tattgatgaa agcattcgcc aagccgaatt gcagtttatt gatttaccga
    15601 ttgatgatgc gttgctggat agcttccttg aaaccatcga cactttcctg cgtacgcaga
    15661 aatcgttggt aggttattcg gtgagcttag actatgaata tgacttggtt gatgcattca
    15721 gccgtgggca agtcccgatt gtgtatgaat acactcctaa aattccgggt gaacgtatca
    15781 gcaataaatc tgtgatgacc cgtaaatact tggcaaactt ggtgtcgcaa cgataagggg
    15841 aaataaatga gtattgcaat taaccaaatt gtaaacggaa atgtttacat taacggcaac
    15901 agccaaatgg ggcgagtgaa tgaggtcaaa atccccgata ttgagtttga atttatcgaa
    15961 cacaaaggcc ttggaatgca cggtgtgatt aaattacctg ccggcacgaa tgcgattgaa
    16021 gcagaaatca cttgggacag tttttatccg gaagtgcgtg cggtaatgct taatccgtat
    16081 aaatacactc agttgcaaat ccgctctaac ctgcaagtgt ttaactcgca gggcttggca
    16141 gccgaagagc cgatggtcac cattatgaat gtgtctgccg gtaaaatcgg cggcacaggg
    16201 cataaaaaca aagaaaatgc cgaatttgcc gacacgttaa atgtacattc aattaaacag
    16261 accgttgccg gtcgtgagct gttatttatt gatgtgctgg cgaatatcta ccgtgtgaac
    16321 ggggtggatg tgttgcaaaa attccgcacc aatatcggtt agtaaaatct ttaaagccgt
    16381 ttaaaatcaa tttaaacacc gtttaagtaa actcctttgt gaagttaaac aacaaccact
    16441 cacaaaggag tttttttatg gctaacgcag ctcaacaagt attaaccaat cttcgtgtac
    16501 aaaccactta taaattgcaa taccctatcg ctttaccaga tggtagagtt attgaaacct
    16561 tagatgtacg tcgtccaaaa ggtaaagatt ttcgtttgct tgatgaaaaa gggtttgacc
    16621 ctgaaaaaga tggcgtaaaa attctacgct tctatattca acagctcacc acacttgtgc
    16681 cggaagatat tgatgaactc gatgctgccg atattaaggg cttaaataac ctattggaag
    16741 atatgcttat tgagggaaag tccgacaaat aagtgaacta gataccgttt atgctgatct
    16801 cgcttggtgg tttaagtttt caccaagcga gcttttagaa ttggatttag tggatattcc
    16861 gaaatgggta gaacagatga acaggcaaat aaaagccggt tatgggcaga ttttacggta
    16921 gagccaaata aagggttcgg tggctaaagt aagtaaaatg gcgacgcccc aagctagata
    16981 cacaccaacc cacgccaaga ttgtcaaaat caatccataa atgagtacaa aactaacgcc
    17041 ctcgcttagg ctttgtatag attgaatcgc atctaaccag tagaagatac tccaaccgac
    17101 taatgctacc gctaacaacc atttagcggt gcattctgtt cttgttacac aagcctcgaa
    17161 accagcccac tcagtaattc gattatttaa tttagtcagc atacaccacc tccttaaact
    17221 ttccctattt tacgctaagg atttaaccaa tggcaaataa tttagctatc ggaatggtaa
    17281 ttggtgcaag cctatcatca ggttttcacg gtgctttttc aggagcaaag aaaaagctag
    17341 aacaattaga acaggctgtc gctaaaaatc agcaaagcca ttctaaatta ggttctgagc
    17401 ttactgcatt gcgtagtaaa caagctactc tctatgcaga aatgagccga gccagtagta
    17461 aaggtggtgc tgggcttgct cttatgcaac aggaatataa aaaaattggc aaagaaattg
    17521 ccaatattag ccgagagcaa cgcaaatgga gtacagaatt agaaaaatct attgctaagc
    17581 aaactaaatt acgcaatgca atggaacgtc atacacaagc taaagaaaac cgagacgagc
    17641 ttaaagggaa aataattgga acggtagctt ctgcggcaat gggtgtcggc gtgatgaaaa
    17701 cctatatgga gcaagaagaa gctgcgaata atcttaaaat ttcaatgctg aaagcagatg
    17761 gttctttcgg gaaatttgaa gagattggca agattgctga cacattaggg acagatttac
    17821 cgggaacaaa aaaagatttc tacaagctcg caatggcatt aaagaaacaa ggtgtttctg
    17881 atgatgtgct gaccggaggg gcattaaaaa cttctgccga actgaatgtc ttgcttgata
    17941 tggatcagga aagtggtgga gagtttttag cgaagtttat ggaatctcac cggctcaatg
    18001 aaaatgagtt accacaagca gccgattatc tgcaacgagc aatgtttgcc ggcggtttaa
    18061 gtaaagagca gatgtatgaa tcgatgaaat actatgctcc aaaactgaac tcaatgaaac
    18121 ttacaggggc tgagaatacc gaaaaagtgc tggcgattga agcaatggca ggtcagcaag
    18181 gcttagaggg ttcaaccttt ggtacgggct taaatatgat gttaagccgt atgaataaag
    18241 gaccggaaat gctcaaggca gcagccaaag gaatgaaagc cgaagctcga gagatgatgg
    18301 aggctgtcgg agtagaattt aatttctggg ataaaaacgg ctcattcaaa ggcattgatg
    18361 gaatgctggc tgaaatgacg aaatttgaaa aaatccgcaa aaaattcggt gacaaaggtg
    18421 taggtttagt tgcagaagag ctgtttggca ttgaaggtgg gcgtcttgct gatattttgg
    18481 ctatgaaagg tcaaaaaggc ttagatgaaa tgctgagtaa aatgcgtgaa caagccagcc
    18541 ttcaagatcg cattaacctt aaaacaaata cattaggtgc tgccctagaa tctttaggag
    18601 gagcgtggga aacctttgtg ggggatattg gctctgtctt tgccgaagat ataaaagggt
    18661 tttcaaaagg cttgcaatct gcggtggaat ggcttgtgcc atttgtatca aaacataaag
    18721 aggcgattaa atttgtaggt ggtttggttg ctggacttgt tattttacga ggcgttttac
    18781 aagctggttc ttttgttatt caaacggtaa ctatggcaat gaacgccctc aaaattgcag
    18841 caatgaccaa tcctattgtc ttagtcattg gagcaatcgc agcgggtgct tacttgattt
    18901 atagccattg ggatagcatt gccccttggt ttgcaaatct ttggcaaaat gtgaccgctt
    18961 acttcaatca attttggact tgggtaaaag gtgtttggtc gggcgtgacg gactgggtgt
    19021 cttctgtgtg gaatggtgta gccacttttt tcgggcagtt atggactacg attactagct
    19081 tatttagtgt agcttggaca aatatccaaa caatatgggg aggagcaaca gcttggttct
    19141 ctggtttatg ggatgggatt aagtctgcgg cttttggtat gttcgacagt attagccaaa
    19201 aagtcagctc tgttgtagca agcattaaga gctttttagg ctttggcgat gatgtggata
    19261 aaatgggggc aaaaattggc aatgtagcta cccaagtcat cagcaaagaa cactcaggac
    19321 aactcagcaa aaccgcagat atggcagcca atacagggtt ctctagcggt ggtttcaccg
    19381 ggcaaggcgg taaatatacc cctgccggta ttgtgcataa gggcgaatat gtgatgacga
    19441 aagaagcgac ctctcgtttg ggtgttggaa tgctggatag cttaaactat ggcggtgcta
    19501 tgggtttcac tcaacctgtt ttgcaaccga ttttaggtaa gcaaaaaggc ttttttggct
    19561 cactttggga cgatgtgaaa ttcggggcaa actttgtcgg caatctgctt ggcttaaatc
    19621 aaggcagcct gaaaacgcct gattttaacc caaatgcgac caatgcaagc ggtcaaaatt
    19681 cgtcgatttt tagcaattat gaaccactca accgaaatgc ggtaacacag caggaaagct
    19741 cgcaagcacc gcagatagtc gtgaacttta acccgacaat caatgtaaac ggtaatgcta
    19801 cgcaagaggc tcaatcgcaa attatgcagc agttgcaaat gagtgcttat gagtttgaga
    19861 aattgctcaa tcgtgtgcta gaccaacgaa gccgtagagc ctattaggag tgatttatgt
    19921 attttatgtt aggcaatatt gcctttgagc cggtgaattt aactgaattt agcgagcaac
    19981 ataccgccga atttgccgaa cacgctgtgc taaaaggcaa acctcgttta caagcgatgg
    20041 gcgaaaagct aaatgaactt aatttttctc ttcggttgca ccataccata ggcggtgtag
    20101 agagccgtta tcaagccttg cttgaagcca aagcgaagca agcggcattg gcgttaattt
    20161 ggggcagtcg ttataaggga gattatgtaa ttgtcgatat ttcatcgacc acattgttca
    20221 ccgatggcag aggcaatgcc ctcgctcgtg aaatgcaaat cagcctgaaa gagtttgtgg
    20281 gcgataatga cggtggtgtg ttgggtgagg cgttaaattt tggtggtggc tcactgcttg
    20341 gctctatttt gccaagcggt gcggtaacta ccctatctca aatcaaaaca gcagtcagcc
    20401 gaggtgtgga gctttataac agcggcaaac gcttagttga cgaagtgcaa aataccgtgg
    20461 cgattattcg gcagttgaaa aatgacccgg caactgcatt ggcatattta cccgctgcat
    20521 tagcgaattt agacggggca ttggggcatt ttggtaattt gaccggctca tcggcgacct
    20581 tgggcggttt gcaggagaaa ctaccggcag cagtggtctt tagcgaggaa atcggcgaga
    20641 tttatcagag tttgcaaaca atgcgaagca gtttgggtaa tgcctcggca aatagctggg
    20701 ataattggtt tacaccggca gagagtgcat tgacagaggt cacagacagc tttgaccatc
    20761 tagcaaaacc ggtggcaaaa atgaccgctt ggattgtgct gcgtaccgat gaggaggcag
    20821 aaaatgacac agttgcttaa acatatcgtc aaacagggtg agcgttggga taacttgagc
    20881 tatcaatact acggcaatgc gtttgaatat ggtcgaatta ttgatgccaa tccgcatatc
    20941 ggtttttgcg aggtgttgcc gataggggta acaatttata tccctgtact taacgttaag
    21001 ccaacgaata atgaaaatat gccaccgtgg ctaagggggc gtgatgcgta atgtaccgaa
    21061 gcccgatttt tcactgtttt atgaaaaaac caatatcact gccgagattg agccacattt
    21121 ggtgcaactg acctatatcg accatttgga aggtcaatcg gacgaactca ctgtggaatt
    21181 tgaagacatt caaggcaaat ggatacgcca atggttcccg actcaggggg ataagctcaa
    21241 agcggcgatt ggctatcagg gcgaatttct gacggacatc ggtgagtttg aaattgatga
    21301 agtggaatat agttataagc cttccactat taacttaaaa gctctaagca ccggtatcag
    21361 caaagccaac cgtactttaa aaccgaaagc ctatgagaat acgactcttg ctcaggtggt
    21421 ggcaaaggta gcagataacc tgaaattaaa ggtagtcggt aagattaagg ctatcccgat
    21481 taaacggatc acccaatatc aagagcggga cgtggagttt ttggcacgcc ttgcccgaga
    21541 gtatcatcac agctttaaaa tcgtgggcaa tcagctggtc tttaccgata aaagcgaact
    21601 ggggcaaagt gagccggtgt taatgttgga agaacgggat actatttccc tacgtttgcg
    21661 agatcggatt aaagacactg caaaggcagt ggaaatcagc ggctatgata caagcggtaa
    21721 aaaagtggtg aaaaaacgca aaaaggcaaa agccttacgc ccgaatataa aacaagctaa
    21781 atcagccagt gaagatacgc tgaaaatcat cacacgaggc gaaagtcaag aacagattga
    21841 tgcacggggt gaggctgcgt tggctacgca aaatgaagat caggcggctg gtgatattga
    21901 gcttatcggc aatcctaaat tggttgccgg agcaacgatt ttattgcgta actttggcgt
    21961 gtttagtggc aagtatctga ttaaatcatc acgccatacg attagccgta gcggtggtta
    22021 tactactcat attgaggtca gaatgttgga gtttattgcc gatgatttaa tcacattagg
    22081 tatggaggct ggcaatgcaa acgcataatt ttggggcgac ttatcaagaa gggattgtat
    22141 ccgctgttga tccgaaaacg cacaaagtgc ggtgtaaaat ccctgcgctg gaagatttag
    22201 aaactgcttg gctgtcgttt ttgaccccga acgccggtgg caatcagttt tactgtttgc
    22261 ccgatgtggg cgagctggtg gcaatgctac ttgatgcaca aggcgaaggt ggctgtgtgt
    22321 ttggggcaat ttataacgag caagacccga caccggttgc cgatagcgat atgtgggtta
    22381 agaaattcag caatggcacg gagatttcgc ataatcgcaa aaccggcgat gtggtagtga
    22441 agactaacgg gcatttaacc gcaacggctc aaggtggggc tacgattaat gcaaacaccg
    22501 tagtcaatgg cacattgcac gctaccggta aaatcacctc tgacgaagaa gtctctgctc
    22561 ctgttgtgaa acaaggcacg gtagagcttg gcacacataa acacggcggt agccctgaac
    22621 ctaataagta attctttaaa ccagtttaaa atccctttta aagatagccc tgtatcatca
    22681 gggctatgaa cagacaaact tccattcaat taacccactg gcaacttgca ccctcaaccg
    22741 atacagttga ggtggtgcaa ggtattgatg atattcatct ttgtattgtc aatatccttt
    22801 caacccaaaa aggcacggat attttacgcc ctgaatttgg ctctgaccac tttcgctaca
    22861 ttgactaccc tgaagatgtg gctatcccga attttgtacg ggaaattaca accgccttgc
    22921 aaaaatggga aaaacgcatt gaggttgaag aagtattggt ggacggttca gctccgcatt
    22981 ttatttttac tgtgatgtgg cacttaaccg atgatgttta tcgtgaaatt taccgaacaa
    23041 cggtataagg ataggcaatg acagaagcga ttaaaatcat tgatgacgat gtaaaaaccg
    23101 tacttgccga agcgattgcc gattatgaaa aacgcaccgg taaaatctta caacctgcac
    23161 atattgagcg ttccattatt caaacctacg cttaccgtga gcagttatta cgcaaaggca
    23221 ttaatcacgc ctttttacaa acctttccgc agtttgcgac ggggattgcg ttggatttgt
    23281 gcggggaaac ttttggttgt tatcggctta gagataaacc tgcccgtact ttactacgct
    23341 tttcagtaag tggtgaacat acagctatag ttatccctaa aggaacgcag gtggcaatta
    23401 atgacgagct atacttttca acgctcaatg acgatgttat tactccatta attacctatg
    23461 tggaaattga tgcagagtgt aatcaggttg gtgttatcgg taatggttgg gaatcaggaa
    23521 gagtcagtaa actaaaaaca gcactggcaa ctaattataa agtaacagtt gaaaacattg
    23581 atattacgag cggtgggttg atgcaggaag aagatgaacc ttaccgtaag cgaattttag
    23641 ccgcaccgga agcctttagt aactgtggct ctatcgctgc atatgattac cacgtccgct
    23701 ctgtatccca agatattgca gatgtgaata tctctacgcc taggggtggc ttggtaagaa
    23761 ttgcggtatt gacccaaaaa gggttaccgg atacccgatt acttgatgat attaaaaaac
    23821 acgttagtgc cgaacggcta cgcccacttt gcgatatggt cgaggttatt aagcccacag
    23881 aacgccgtta tcaaattacg gcacgtttaa tattgttaga tggctaccgt gaggatttgg
    23941 taaaagcaaa agcccgagag gcattacaac tctatttgtc agacaagact aaaaaactcg
    24001 gtttagacat tgtgccgtcg gccatcattt cagctttaag agttgagggt gtttacgatg
    24061 tgaatttaat tcagccagtc aaaactatta tcaacgaaac agaatgggcg aactgcacag
    24121 caatcagcgt agaagtcgaa gaggagcgta gagatggcta gcttgcacta tgcggacatt
    24181 attgtgcgag accctaaata taaagcatta gcggatttaa gcaagcggtt aaatttgctc
    24241 gatacttcgc aaattatgac tacgctggtg gatttattgg gcgacgaatg tatcccattg
    24301 ctggcagaaa aatggtcggt aaccggctat gacggcttat tggttgcaga tagcgaaaac
    24361 tcaaagcgag ccttaattaa aagagcaatc gaactacatc aactaaaagg cacgccttgg
    24421 tcaattcgtg aagtattacg cagactaggt ttcggagagg ttgagattga cgagggactg
    24481 aaaaatcggc tgtatgaaag cacttatgtg agcggaatcc ccgaaaacga acgctgggcg
    24541 cactatgcga ttaggttgag taacccgatt accaatgagc aagctcgcaa tatccgtaag
    24601 gtcttacgca attttgctcc ggctcgttgc tctcttgcag ttttggatta taaagcagat
    24661 ccaattcgat ataacaataa agcaacctac aacggcacat ataaccacgg ttcaagttaa
    24721 ggataaatta tggcaggtgt acaagaaacc gcacagtggg aaaaccacgt ttacagaatt
    24781 gaagaaaatg acccagtcca cggaggagaa aacggtgtaa ccaataagcc aattaagcac
    24841 ctagcaaacc gcacgctcta tctgcgtaga ttgctcaccg aggcaggaca acgcattaac
    24901 ccgaaaaaaa tcacagctac cagcaaaaat agtaatgatt taactgggca tactcacgag
    24961 attgaccacg caagcctaac gcaaaaaggc attgtgcagt taaatgcgag tatccaatca
    25021 actagcacaa ctgagtctgc aaccccttca gcagttaaag cagcctatga taaagcagca
    25081 acagcagaac aaaaagcgac attggcaaat gagaaagtcg aggcgattaa agtaggcgga
    25141 cgaaacctcc tcattcaatc caacactcca cacaacggga atgcgtactc agtcagatac
    25201 gcattggctg aggctccgaa agtaggcgaa gagattgtag tcactctatg gggtgaactc
    25261 ggctctcaac gtactggaat tggcgtttac aactctcaag gtgctacgga gttggcaaaa
    25321 ctggtcaaaa ttcgtgatgg agtttatcaa ggtaaaggca tttggcgtaa gccgatgagt
    25381 gagggacgag agcgaacgcc taacgacacg cacctgaatg tgtattttta cccgaaaacc
    25441 gcaacagata ataaccgtat tgagcgaatc cagcttgagc gaggctcaat cggtacagat
    25501 tggacgccaa acgaggcaga cttaaaggca gagattagtg caatccgcac taaactaatc
    25561 cctgtacggg gtggcaatgt tgctacaacc ttaaatgcgg ctaagcggtc ggattggttt
    25621 agagaaatgc aaatccctta tcaaagtggt tgggggtatt acacccaagc atttcataac
    25681 tcagggacgc aacacaacta cagcaattta ccgctgacag gtcgttatta ttttatcgcc
    25741 gaactctatc ataactctgg ttattctcac ttgcgtatca cctatccaag tttaaaacgc
    25801 acctttgaga gtgctatcaa ccttaacaat gaggatttga ttctagattg gcgtgaggtg
    25861 gtgtttttaa aagatggatt gtatcaaggc acttttaaaa caacaggcac actagagtct
    25921 gcttatcgtc taagagcggc tcgtgatgat gaacgttatc agccatacct gcaaatggtc
    25981 gatatgggct atgaccttgc caatcccccg gtaggaaaaa acaaaattat tggcagtgtt
    26041 gattattacg ttaaaaacgg cacaagcgag tcttccaaag cgacgatgat ggcagcggca
    26101 atgcctgaca agaacgtatt ttgggaagta gcattgtgga atgcagcaca gcaacggaat
    26161 gtattgttta aggggtatag caagactaac aatttgagta ttggtaaaac caccgacaat
    26221 gagcgagacc gagtacaagt caatggcaca atccaagcca ccgcaccggc tgataacgcc
    26281 aataacgacc aagtgccgac tacggcttgg gtgcgtaaga tggcaaagat tttagctgat
    26341 ggcaaggtga gtaaagccgg tgacacaatg actgggcatt tattcatcaa gaatggggaa
    26401 tactctgcgg tacataccta taacacaagt ggttggttcg caaaatggga ggcggcccca
    26461 ttatctgatt cgcactttgc tgccattgta tatgccaacg acagagagac agttatcaat
    26521 cgggtgttaa ttcccaagaa gaatggcaca gtcgctttaa ttaatgatat tgccgatacc
    26581 gttagagccg ctgtgagtcg tagtgataaa tcccgtagta gaacttttcc tctgcaaacg
    26641 gggaaaaaat atacaaccac agggagcgtt acgatttatc cagatggccg aattgtgcag
    26701 attttccact taaaaaatat taaagcggcg tggtttgatt atgaggcaag tgcggtagga
    26761 gataggcata gagttgtcaa tatccctctt tggactgcga tgccaaataa aatttttgat
    26821 gtcgatgtta aaactgttcg cccctcaaat aatgcctcaa cttactacat agaagcggct
    26881 gaatggctga gtgcgtggca gatttacggt aatgacacga acaaatcaag tgtcaatatt
    26941 aatctatctc gattcagagg tggaaaggat gaagatatgg acttgtatgt aacagttgag
    27001 ggatattaaa tggcatattt tgtgaatgtg attgatgagc aaggcaatta tgagctaatt
    27061 gatgatgagt ttattgggct gtatccggat ttggatttta acacattacc caaactcacg
    27121 gataagcaat atcagaccta ccttgccaaa gcaaacggca aagagcgatt tgtaaatggc
    27181 gaatttgtgt atgagcaaat taaggtggat atgcaagcgg tcatttccgc tgaaaaatct
    27241 gcaaagttag cagagattaa ccaaaaagca caagccttta tcaatgattt agccaaatac
    27301 aacgaaacgc ctaagtttga gcgtgatact tggcttgagc aagcgaaaga ggcaaaagcg
    27361 tgggtggctg acccaaccgt acaaacgcca acccttgagt taattgcgca aatgcgaggc
    27421 ataccgctcg acacgctacg ccaaaaagcc tacgaaaaag cgatggcgta tcaaacggtg
    27481 gctgctattg tagcagggca acggcaagga tacgaagacc gcctagaaca agcggaaacc
    27541 ttagagcaaa tacaggcgat tgagccgatg tatcaattac cgcaaggagc aaacaatgag
    27601 caaactgact aaattaaaat cgtggagcta ccacgtctta attgcaatag atcaactctt
    27661 taacgctctc accggtggag cagcggacga aacattttct agccgttgct accgtggtgc
    27721 agtgcttgcg gaaaatccga aaaaacgttg gcgtttttgg cactcttttt tgaattgctt
    27781 atttttagac ccaaagcact gctacgccgc ttataaagcg gaggtacacc gcaagcagta
    27841 tccgaaggca tttagacttg gggggattta atgaaaaagc aaaacttaaa attagtgcgg
    27901 ggcgatgatg tgagttttag attcagcatt aaagacagca ccggacaacc tcttgcgtta
    27961 aaggatttgt ggtttgattt gcacttagtc agctatcaag gtgaggtgct gattgctctc
    28021 tctactgatg atggcagtat tgagacagca gaggctggtc agatggtgtt acattttagt
    28081 caccagcaaa ctgctcgagc tgaatggaca agtgccaatt atgacttgca actcacgcac
    28141 gactatacaa gagtctagga ggtggagatg acctctatca ttgaactaga cctgactgat
    28201 gacctcatca ttgaggtgca gttagatagc acaatcatta ccggcgatag ctttttagcc
    28261 aacctgccgg atttactcca aatttacaac caagcaaagt cagatagcag taaggagctt
    28321 aacaatgact aaacacaaaa accacgaaaa ccacccgatt gctataacat tctaccaact
    28381 tggcaaagat gtcggcgaca ttaaccgccg gctagcggtt attgagcaac gtgagcaatc
    28441 agcacagcca agccaaccac aagctgaggc ggttacaatg ccacagcaag atgctgttgc
    28501 cattaataac atcaatgccg ttttggaggc ggtcgaaaaa tacaaaactt ttgaaaaata
    28561 caacactcag tggcaagagc gttttgaaaa attcctgtct cgtaacccga atgattacga
    28621 gttaagtgaa gagcaacgcc aaaaacttta ccacacgatg tgccagcatt tgtggcaggt
    28681 gaactttact gaaatcaata gtaaacagta tgaattaccg atcccgcaac aattccaggg
    28741 taagtttggc tatattgtca aaacctcggg cggtagcaca gaaattagtt ttgagttgct
    28801 atctgaaact cacagcactt atctttatcc ggatagctat attcccgagg gcggtggcga
    28861 tgtaatgctc aagccggctt atatttattt agtgattccg gacttagtgg caatgcgtga
    28921 gccggaggtg gtgggggttt caccgctgaa actgaacatt ctgcagaaac acctgctgac
    28981 acctcagaaa ctacaggagc agaagccctt gaacacgaag gcaaactgat tgatggcgta
    29041 tggcattttg agcgagagcc ggtaaatcca ccgagagatc agaattatta tgtggcaggt
    29101 aacctgttct acaacggcat accggattga taaattgatg tttcagtaaa cctaattagg
    29161 ggggaatccc ccttttttat tattataagg aaagaaaatg aataaatctt tagtagcgtt
    29221 agctgttgca gcgatggcat cgaaagcaca aactaaa
//
LOCUS       DANLXB010000005        25399 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLXB010000005 DANLXB010000000
VERSION     DANLXB010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25399
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..2009
                     /locus_tag="PXD41_000144"
     CDS             <1..2009
                     /locus_tag="PXD41_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL6287715.1"
                     /translation="ENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAG
                     YPLEMKAEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPE
                     LLEYAQNVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFD
                     RFWLATPKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNEN
                     LKIWLSSVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPS
                     FQQYQTWAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRL
                     RMAIWQKADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAML
                     AAQQLGIVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIK
                     PEAGENTPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQ
                     DKKISKTFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLF
                     QPFNNIMLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASI
                     PFYETRGYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            2058..2134
                     /locus_tag="PXD41_000145"
     tRNA            2058..2134
                     /locus_tag="PXD41_000145"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2092..2094,aa:Met,seq:cat)
     gene            2361..2822
                     /gene="rimP"
                     /locus_tag="PXD41_000146"
     CDS             2361..2822
                     /gene="rimP"
                     /locus_tag="PXD41_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL6287716.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            2843..4339
                     /gene="nusA"
                     /locus_tag="PXD41_000147"
     CDS             2843..4339
                     /gene="nusA"
                     /locus_tag="PXD41_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL6287717.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            4324..6891
                     /gene="infB"
                     /locus_tag="PXD41_000148"
     CDS             4324..6891
                     /gene="infB"
                     /locus_tag="PXD41_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL6287718.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            6976..7356
                     /gene="rbfA"
                     /locus_tag="PXD41_000149"
     CDS             6976..7356
                     /gene="rbfA"
                     /locus_tag="PXD41_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL6287719.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            7359..8282
                     /gene="truB"
                     /locus_tag="PXD41_000150"
     CDS             7359..8282
                     /gene="truB"
                     /locus_tag="PXD41_000150"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL6287720.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            8285..9365
                     /locus_tag="PXD41_000151"
                     /pseudo
     CDS             8285..9365
                     /locus_tag="PXD41_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(9403..9927)
                     /gene="tadA"
                     /locus_tag="PXD41_000152"
     CDS             complement(9403..9927)
                     /gene="tadA"
                     /locus_tag="PXD41_000152"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL6287721.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(10009..11817)
                     /locus_tag="PXD41_000153"
     CDS             complement(10009..11817)
                     /locus_tag="PXD41_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL6287722.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(12019..12942)
                     /gene="nlpI"
                     /locus_tag="PXD41_000154"
     CDS             complement(12019..12942)
                     /gene="nlpI"
                     /locus_tag="PXD41_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL6287723.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(13023..15173)
                     /gene="pnp"
                     /locus_tag="PXD41_000155"
     CDS             complement(13023..15173)
                     /gene="pnp"
                     /locus_tag="PXD41_000155"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL6287724.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(15435..16715)
                     /gene="phoR"
                     /locus_tag="PXD41_000156"
     CDS             complement(15435..16715)
                     /gene="phoR"
                     /locus_tag="PXD41_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL6287725.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(16718..17404)
                     /gene="phoB"
                     /locus_tag="PXD41_000157"
     CDS             complement(16718..17404)
                     /gene="phoB"
                     /locus_tag="PXD41_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL6287726.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(17488..18258)
                     /gene="pstB"
                     /locus_tag="PXD41_000158"
     CDS             complement(17488..18258)
                     /gene="pstB"
                     /locus_tag="PXD41_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL6287727.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(18268..19116)
                     /gene="pstA"
                     /locus_tag="PXD41_000159"
     CDS             complement(18268..19116)
                     /gene="pstA"
                     /locus_tag="PXD41_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL6287728.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(19113..20072)
                     /gene="pstC"
                     /locus_tag="PXD41_000160"
     CDS             complement(19113..20072)
                     /gene="pstC"
                     /locus_tag="PXD41_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL6287729.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(20153..21190)
                     /gene="pstS"
                     /locus_tag="PXD41_000161"
     CDS             complement(20153..21190)
                     /gene="pstS"
                     /locus_tag="PXD41_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL6287730.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            21375..23621
                     /gene="parC"
                     /locus_tag="PXD41_000162"
     CDS             21375..23621
                     /gene="parC"
                     /locus_tag="PXD41_000162"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL6287731.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(23692..25044)
                     /gene="lysC"
                     /locus_tag="PXD41_000163"
     CDS             complement(23692..25044)
                     /gene="lysC"
                     /locus_tag="PXD41_000163"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL6287732.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
BASE COUNT         7516 a         5107 c         5710 g         7066 t
ORIGIN      
        1 cagaaaattt gcgtttaaaa cagagagaaa attttcagca aattaattat ttggcagatg
       61 cagcgattag tcagaagaat ttatcacttt caacggagca gataattcag cgtttattac
      121 taaccttagc gggttatccg ttggagatga aagctgaatg gaagctgcta aatgctaaaa
      181 taacgttaaa acaagccaca gaaagtgaag ttaaagcatt tatttcaaaa tatcctgatt
      241 ctttgtatca aaggcagtta cagaacttga tgtttgagct gctctatcgt gaacagaaat
      301 ttccggagtt actggaatat gctcaaaatg taaaacagag tagtcttgcc gaccaatgcc
      361 gtttattttc tgctcgttat gaactggcag caagtaaagc tcaaatcaat ccggaagttt
      421 ctcaagtaac tgagcaaaaa gcagaaaatg cagaactgct tgctttggtg caagagtttg
      481 atcgcttttg gcttgctacg ccgaaattaa cttctgattg tgcgaattta gaaagttatt
      541 ggcgggatca ggggcttaaa accgatgaaa aaatgcgttt gaaagcggtc gaattaatta
      601 aacaaaatgc aaatgcagaa ttggcgaatt tggcggcaaa tgtaaataat gagaatttga
      661 aaatctggct atcttccgtt gaaaaggtag cgaataatcc ggcagatttg caaaatttta
      721 tcgaaaatca accgcttgat tccccatttt atgctgataa taaagcgatt attcagcaac
      781 tctttgctaa atatgtgcga actttatcgg aaaatatgga gaacccgagt ttccagcagt
      841 atcaaacgtg ggcagagaag tatcaacttt ccagcgagga aatcaatggc tggaaaaatg
      901 cttttatcac tcgatttttt gataacccag aaccaacatt ccaattttgg cgtgatgagc
      961 aaatcaagtt gctcaagaca gacaatttaa ctgaacgccg tttacgaatg gcaatttggc
     1021 aaaaagcaga tttaaatgag tggctggttc tgctatctca gcaggcgaaa gaaaaagcag
     1081 aatggcgtta ttgggctgcg aaagaggaga aaaacgaagc gaagcgtaaa gttgattttg
     1141 aaagcttagc taaagagaga ggcttttatg ctatgttggc tgctcaacaa ttaggcattg
     1201 tttaccaaat cccgatgctt gaagtgcctg aattgacaca agcacagctt gaattgtatg
     1261 caaaccaatt agctcgtatt caagagttgc gagagctagg gcagtttgac caggcaagaa
     1321 aaatatggat tgactggata aaaaacatca agccggaagc aggtgaaaat acaccaacta
     1381 aaatccagtt agccctgata aaatatgcca aggataaaaa ttggtatgat ttggcggtgg
     1441 aaggtacaat tcaaacaaaa gcctttgatt atcttgattt gcgattaccg aatgcctatt
     1501 cggattggtt cgatttacat ctgcaagata aaaaaatcag caaaacgttt gctcaggcga
     1561 ttgctcgtca agaaagtgcg tggaatgctc aggctcaatc gcacgctaat gcgagagggc
     1621 taatgcaact gttaccgaca acagcacaaa aaaccgctaa agataacggt ttaaccttca
     1681 aagatggcaa tgatctcttt caaccgttta acaatattat gttaggcaca acccatttaa
     1741 tggagttaaa cgaaaaatat ccgaataatc ggattctgat tgcctctgct tataatgcag
     1801 gagcagggcg tgttgagcag tggctgaaac gtagtaacgg gcagttagca atggatgaat
     1861 ttattgccag tatcccgttt tatgaaacca gaggctatgt acaaaatgtg ctggcgtatg
     1921 actactatta tcaaatgctc tatagcgata taaatgataa aaatggatta aaaatgttct
     1981 atcaagagga attaacaaga aaatattaaa aaatgcttgt gtttttgtgt agaaccgcta
     2041 taatgcaccc catcagacgc ggggtggagc agcttggtag ctcgtcgggc tcataacccg
     2101 aaggtcgttg gttcaaatcc ggcccccgca accagtttta agctcacagc tttggttaaa
     2161 gttgtgagtt ttgttttata tgctgtagca aatttgcaaa aaatttggca aaaaagaccg
     2221 cttgttgtgg ttgctacagc aaaaaacaaa ccgcttaaag ccccacggtt tcccgtctgg
     2281 ggcttttttg cggaaattgg tacagcatta acgtatcaaa gctggtttat ccggcttttt
     2341 ttatatttgg agattatgac ttggcaactt tagaacaaaa attagaagat ttagtgctcg
     2401 attctattga agcattaggc tttgaattag tcggcattga atgccaacgt gcaggccgtt
     2461 ttttaacggt gcgtttatat attgataaag aaggtggcgt gacgattgat gattgtagcg
     2521 atgtcagccg ccaagtgagt gcgatttttg atgtggaaga tccgattgcc gataaatata
     2581 acttagaggt ttcttcacca gggttagatc gtccattatt taccgttgcc cactatgagc
     2641 gttttatcgg gcaagatgta gtgattcatt tacgcattcc gatgttcgat cgccgtaaat
     2701 ggcaaggtaa aatcaaacaa gtagaaggtg atttcatcac tttaacggta gaaaatgaag
     2761 atcgccagtt cgcatttggc aatattcaaa aagcaaattt agttccggtt tttaattttt
     2821 aagataaagg taaactgaca aaatgagtaa agagatttta ttagctgcgg aagcagtttc
     2881 aaacgaaaag caattaccaa aagaggcaat ttttgaagcc ttagaaaccg ctttaaccat
     2941 tgcaaccaaa aagagccgtg atttagatat tgacgtgcgt gtggtggtag atcgtaaaac
     3001 cggtgatttc caaactttcc gtcgttgggc tgtggttgaa aatgtgaata atatgacccg
     3061 tgaaatcagc ttagaagcgg cacaatttga agatccaaac gtacaattag gcgattttat
     3121 tgaagatgaa gtagagtcta tcgagttcgg tcgtgtggcg attcagactt ttggtcaggt
     3181 agtcaaaacc aaaattcgtg aagcggagaa gacgaaaatc attgatgaat tccgttcgga
     3241 tttaggcaaa attattcttg ccactgtgaa aaaagtaacc cgtgataata ttttccttga
     3301 gttacaaggt aaatcagaag atatcaaagg cgaagcggtc attgtgcgtg aagatatgat
     3361 cccacgtgaa aacttccgcc cgggtgaccg tgtgcgtggt gtgttatacg aaatcaagcc
     3421 tgaatcaaaa ggacctcagc ttttcgttac ccgtgctaaa ccggtgatgt tagaagagct
     3481 attcaaattg gaagtgcctg aaattggcga aggcgtaatt gagatcaaag gttcagcccg
     3541 tgatgtcggc tctcgtgcaa aaattgccgt gaaaacccac gataaacgta ttgacccggt
     3601 aggggcttgt gtgggtatgc gtggtgctcg tgttcaagct atcagcaatg aattaggcgg
     3661 cgagcgtgtg gatatcgtac tttgggacga aaatccggct caatttgtga ttaatgcaat
     3721 ggctccggca gatgtaagct ctattgtgat taacgatgaa actcactcaa tggatattgc
     3781 ggttgaagcg aaaaatctgg ctcaagctat cggtcgtaac ggtcaaaacg tgcgtttggc
     3841 gacacaatta actggttggg cattaaatgt aatgaccgtt gaagagctaa cgaagaagag
     3901 cgaagaagaa gatggtaaag tcatcaattt attaacttct gctttagaaa ttgatgaaga
     3961 atttgctcaa gttttaattg aagagggctt tacgtctctt gaagcgattg cttatgtgcc
     4021 ggttgatact ttaacggcga ttgacggttt agaagatgaa gatttagtcg aagaattaca
     4081 atctcgtgcc aaaaatgcga tcacgaaaaa agcgttagaa gaagagaagt tattaaaatc
     4141 agctcaaatt gaagaaaaat tattaacgct tgaaggtatg gatcgccata tcgcattcaa
     4201 attagctgaa aaacagatta cgactcttga agaacttgca gagcaaggtg ttgatgattt
     4261 agccgatatt gaagaacttt cagaagagaa agctggcgag ctaattatgg cagcacgcca
     4321 aatttgttgg ttcaactaag caaagaggat aataaaatga cagaagagaa aaaaacactt
     4381 tcgcttggtg gcgctcgcaa agcgagtaaa gtgaatacaa ccacaaccag tggtaaagta
     4441 aaagcggttg aagtaaaaga gaaaaaaccg aaaattgatg caaaagcatt gcaagaaaaa
     4501 gcagcaaaag aagctgccgc agcgaaagct agagctgaaa aagaagcagc tgaaaagtta
     4561 gccaaagaaa aagccgaagc tgaagctaaa gagaaagctg caaaaaaagc agcagaatcg
     4621 accgctagta aaccgatttc tgtgccggta atgccaagca gcaaagcaaa agaagaaaaa
     4681 ccgaaagcac aacaggtaca gccaaaacaa gagaaagcgg ttgatcctga aaaagaagct
     4741 aaacgcaaag aagaagctga gttacgccgt aagcaagagg aattagctca gcaaaaagcg
     4801 gaaatggagg caaaacgtgc tgcagaaaat gcccgccgtt tagcagaaat tgctcgtgaa
     4861 gaagcggaag ataacggcaa cgaagatttt gatgatgagc gttttacttc ttcttatgct
     4921 agagaggctg agcgtgataa tgaccgccgt agtgagggaa atcgtggtcg taacggcaaa
     4981 ggcaatgtgg ctaaagcgaa aaaaggcgga cgtgaagagg ataaaaacga acgcagtgca
     5041 gatcgtcgca accataaaga agtaaaaggc aaaggtaaac aaggtaagaa aggtgcagct
     5101 ttacaacaag cctttaccaa accagctcaa gttgttaaag ctgatgtggt gattggtgaa
     5161 actatcactg tggctgaatt ggctaataaa atggcagtga aagcgactga aatcatcaaa
     5221 atgatgatga aaatgggtga aatggtgacg atcaaccaag ttatcgacca agaaaccgca
     5281 caattagtgg cggaagaact tgggcataaa gtgattttgc gtaaagaaaa tgagttagaa
     5341 gaagcggttt tagaagatcg tgatactcac gcagaaaaag taacccgtgc accggtagtg
     5401 actattatgg gccacgttga ccacggtaaa acctcgttac ttgactacat tcgtaaagcc
     5461 aaagtggcgg caggtgaagc aggtggtatt acccagcaca ttggtgcata ccacgttgaa
     5521 accgatgacg gcaagatgat cactttctta gataccccgg ggcatgcagc ctttacctca
     5581 atgcgtgcgc gtggtgcgaa agcaactgac atcgttgttc tcgtcgttgc ggctgatgac
     5641 ggtgtaatgc cacaaactat tgaagctatc cagcacgcca aagcagcggg tgcgccatta
     5701 gtggtagcgg tgaataaaat tgataaaccg gaagcgaacc ctgaccgtgt agaacaagag
     5761 ttactacaac acgaggttat ttctgagaaa ttcggtggcg atgtgcaatt cgtgccggta
     5821 tctgcgaaaa aaggtatggg gatcgatgat ttactagaag ccattattct gcaatccgaa
     5881 gtgcttgaat taaccgcagt aaaagacggt atggcaagcg gcgtggtaat cgaatcttac
     5941 ttagataaag gtcgtggccc tgtggcaact atcttggttc aatccggtac gctaaacaaa
     6001 ggcgacattg ttctatgtgg ttttgaatac ggacgtgtgc gtgcaatgcg tgatgaaaac
     6061 ggtaaagatg ttgaatcagc aggtccgtct attccggtag aagtattagg cttatcaggc
     6121 gtgcctgctg ccggtgatga ggcaaccgtc gtgcgtgatg agaagaaagc ccgagaagtg
     6181 gctctttatc gccaaggtaa attccgtgaa gtaaaactgg ctcgtcagca aaaagctaaa
     6241 ctggaaaata tgttcagtaa tatggcagcc ggtgatgtgg cagaattgaa catcattgtt
     6301 aaagcagacg tacaaggctc ggtagaagcg atcagccaat ccttaatgga actttcaacc
     6361 gatgaggtga aagtgaaaat tgttggttca ggtgtaggtg gtattaccga aactgatgca
     6421 accttagccg cagcttctaa tgctattatg gtcggcttta acgtgcgtgc cgatgcctct
     6481 gcccgccgtg tgattgaaaa cgaaaatatc gatttacgtt actactccat catttatgag
     6541 ctattaaatg acgtgaaagc agcaatgagc ggtatgttac agcctgaatt caaacaagaa
     6601 attatcggct tggcagaagt gcgcgatgtg ttccgccacc cgaaatttgg ggcgattgcc
     6661 ggttgtatgg tgacagaagg tatcgttaaa cgtaacaacc caatccgtgt tctgcgtgat
     6721 aacgtagtaa tttttgaagg cgagttagaa tctctccgcc gtttcaaaga tgacgtatct
     6781 gaggtgcgta acggtatgga atgtggtatc ggcgttaaaa actacaacga cgtaaaagtt
     6841 ggcgaccaaa tcgaagtgtt tgaagtggtt gaagtaaaac gtactattta gcctaatttt
     6901 gtgtaggggc gtattgcata cgccctttgt attttttagg gcgtgaagca tcacgcccct
     6961 ataaaagaga aaaatatgtc cagagaattt aaacgtagtg accgtgtggc acaggagcta
     7021 caaaaagaag tggcggtgat tttacaacgt gaggtaaaag atcctcgcat tggtatggtg
     7081 actgtttctg atgtggaagt atcaagagat ttggcgtatg ccaaaatttt tgtgactttc
     7141 ttatttgata acgatgctga agctattaag caaggtatgc aaggcttgga gaaagcaagc
     7201 ccctatattc gaaccctttt aggtaaagca atgcgtttgc gtattgtgcc tgaactgcgt
     7261 tttatctacg atgaatcgct agtcgaaggt atgcgtatgt ctaaccttgt gtctagtgta
     7321 atcaaaaatg acgaagaaaa acataaagag gactaattgt gtctagacct cgcaaacgtg
     7381 gccgtgatat tcacggcgtt ttcttattag ataaaccaca aggaatgtct tcaaacgata
     7441 ttctgcaaaa ggtaaagcga attttccaag caaataaagc cggacatacc ggggcgttag
     7501 accctctcgc aaccggaatg ctgccgatct gtttaggtga agcgaccaaa ttttcgcaat
     7561 ttttgttgga ttcggataaa cgttatctcg tcaccgcaaa attaggcgag cgaaccgata
     7621 cttcagatgc ggaagggcaa gtggtggaaa ccaaagcagt tgcagtgaca aaatctcaaa
     7681 ttttggctgc tttggagaaa tttagaggtg atattttgca agtgccgaca atgttttcgg
     7741 ccttaaaaca caacggcaaa cccttgtatg aatatgcccg agcagggatt acggtggagc
     7801 gtgaggctcg cccgattacg atttttgaac taaatttcat tgaatacaag gctccatttt
     7861 taacccttga ggtgcattgt tctaaaggta cttatatccg aactttggtc gatgatttag
     7921 gcgaagagtt gggctgtggt gcacacgtta cgatgctacg ccgtacagca gtggcagatt
     7981 atccgattga aaaaatgatg agctatgcag atttgcaaaa tttagccgaa aatcaaccgc
     8041 ttgcagagtt agaccagcac ttattgccga tggatacggc agtttctgca ttagcaaaaa
     8101 taaatttaag ttcagagcaa actaaagcgg tgggttttgg tcagagaatt agatttgata
     8161 atctgaacca actttatggt ttggtacgtt tatattcaga agatgaacaa tttctcggtg
     8221 tggcagaaat caccaatgat actgtgattc gtcctaaccg aatgattaac ttaacggaat
     8281 aagaatgaaa tcgataattt ttaccttacc tttagcgatt atcactttag ccttagccgg
     8341 ttgttcaagt gataatcaag aaagttatgc cggcttaaac ttagatgcta aatacagtaa
     8401 atctcgctcg gtcagtcatt ttaatgatta tgtgcatttt ctgaaacaga aggcagcagg
     8461 ggcaggagtg tctgcaaaaa ccttaaatgc tcagaaattc attcattaca acgccagagc
     8521 ggtgcagtta gatcaacagc aagctgcacg aagacgtgac ccgaatgtac cgcctccgcc
     8581 accaaatcca agttttaaac aaagtattaa ctcaagcgaa ggtggatcag gcaagtgaac
     8641 gttggtatga atataatagc cagcttaccc atgccagcca aaaatatggg gtacaaaaag
     8701 agtatatttt ggcactttgg ggaatggaga gcagctttgg gcgtaaccaa ggggattttg
     8761 atgtactttc ggtgttggca accctcgcct ttgatggtcg ccgtgagaag ttatttacgc
     8821 aagaatttgt gaatgcgatg aaaatgctcg atgacggcac aattaaacgc tatgaattgc
     8881 ttggatcttg ggcaggagcg atgggacaaa ctcaatttat gccaacttct tacttaacct
     8941 atgcagctga tggcaataat gacggtaaaa aagatatttg ggagaatgaa gccgatgcat
     9001 ttgcctcgat tgccaattat ctttcaacag taggttggga taatcaacta ccttggggtg
     9061 ttgaggttaa attagcttca ccgatggatt taagtttcgc cggtcttgaa accaacaaag
     9121 cgaaaacatt ggcggaatgg caagccttag gtatttattt agcttatccg aatggacaag
     9181 aatcggcaaa attagctcaa ttacacggca aagaggtttg gttgattcgt ccggataaag
     9241 aagcgggaag agcgttttta gtttctaata atttccgtac tttaatggat tggaataaat
     9301 cgaataacct tggtatcagt atcggaaaat ttgccgatcg aattttagct tcagttggtc
     9361 aataatcgaa taaaagcata gtagcaaagc ctatctatgc ttttatttta tcaaagcgtc
     9421 gcctttcttc tgcaaacgac gttgcttaaa aaaatcactg atcttttggc tacattctct
     9481 gcccaataca ttgccatgca cttctaagaa atggttcatt ttataatctt caaacagatg
     9541 atagcgtgaa cctaccgcac ctgttttata atcacttgcc ccaaaaacca atcgcttaat
     9601 ccgactatgt aaaattgcac cggcacacat tgggcaaggc tcgagcgtaa cataaagggt
     9661 acaatctaac agacggtaat tccctaaagt ttgtcctgct tgacgaattg cctgcatttc
     9721 agcgtgtgca gatggatcac agagttgaat ggtttggttc cagcctctgc cgataatctg
     9781 ttggttttta tcaaccagta ctgccccaac cgggatttcg ccttttgctt cggctaaatc
     9841 agcgagatca agggcgtatt gcataaaggc gatgtcttgc tcggagatct gaagtggaca
     9901 agaagtttga tttggtttga taaacatagt tgcaaaaaat tgagtttttt tgaccgcttg
     9961 taaaatgccc cacgagggtg gggcatcgct tacttcgctt agtgtcgttt agtcacgacg
    10021 accacgtttt tcactgaaac gtttttcttt aaagccacct ttgcggtctt tattgaaacc
    10081 cccgtctcgg cgaccaccac gatcattacg atcgttacca cggcgaccac gaccttcaaa
    10141 tggatttgca ttacttgcac tgtttgcaga gccaagtaat gtcatctgca ttggtttgct
    10201 taatacacgt gctttgtgag cgaaatgttg tacgagatga tttggcattc cttgcggcaa
    10261 ctcaatggtt gagtatttat cataaagttt gatatgcccg atgtaacggc tgctgatatc
    10321 cccctcgttg gcaatcgctc caacaatatg acgaacttcc acaccgtctt cacgccccaa
    10381 ttcaatgcgg tataaatcca ttgccacacc attgttttca cggtgttcac gaccgttacg
    10441 acgatcgttt cgctcattgc ggtcacgtcc acgttcagaa cgggcagcac gcacaaccgg
    10501 atccggtggc agaatcagtt tttgtttttc ttgcagtaac atcatcatcg ccgctgctaa
    10561 ttcttcgtgg tcttgatccg cagtaaataa atcttccaac aattcacgat atttttctaa
    10621 atcgtgatgt tctaactgct tagaaatgcg ggctttgaat ttctcacggc gtttttccat
    10681 taaaatttcg tggtttggaa tcgccacttc attaattggt tttttgatta aattttcgat
    10741 attgcgtaat aagcggcgtt cacgaggctc aacaaacagt aaggcacgac ctgaacgacc
    10801 ggcacgaccg gtacgtccga tgcggtgaac ataagattct tcttctaacg gaatatcgta
    10861 gttaataacc aagctgattc gctcaatatc aataccacgg gcagcaacat cggtggcgac
    10921 taaaatatct aaacgaccgg agcgtaattt atctaaggtt tgctcacggg cttgctgggt
    10981 catatcgccg tttaatgccg cagtacggta gccgttgcgt tcacacaatt cggtaatatc
    11041 aatagtaccg gttttggtgc gggtaaagat gatagcagca tcaaattctt ctacttctag
    11101 gaaacgcaat aacgcatcgt ttttacggaa gccgtttacc agccagtagc tttgttcaat
    11161 atccggggct gaacgctcgg ttgccttaat ttttacctct tgcggatctt tcataaaacg
    11221 acgggtaata cggcgaatcg gctccggcat ggtggcagag aagagagcag tttgatgtgt
    11281 ttccggtaat tcagccatta ccgtttcaac atcgtcaata aagcccatac gcagcatttc
    11341 atcggcttca tctaacacga tgaattttaa ttcggataaa tctaatgtgc cacggcggat
    11401 atggtcaaga atacgcccag gtgtacccac tactacttgt gagccttgtt ttaaagcacg
    11461 taattgaatg tcgtaacgtt gtccaccata aaccgtcact acacgaatgc ctttcatatt
    11521 ttttgcaaac tgctcacaag catcggctac ttgaatcgca agctcacggg tgggtgccat
    11581 caccaacatt tgcgggtggc gttgtgttgg gtcaatttgt gccaacagcg gcagcgagaa
    11641 tgcggcggtt ttaccgctcc cggtttgtgc cataccaagc acatcacgac cggctaataa
    11701 atgaggaata cattcttgtt gaatgggtga tgggtttaca aagcccattt catttacagc
    11761 atcaaggatt ggttgaggta agcctaaatc ggcgaaagtt aaagattcag ttgtcataaa
    11821 aaaccatttg tttggaacgc acaaagcaga aaatatcgac tatttttctg cacagccatt
    11881 aatgaaaatt atattgttga aatttaggaa gaaatgaaat aacaaagcaa gtgatgcttt
    11941 aaaaatcccc tgagtataag cggttaaatt tacaaaattt tttgcgaaat taaccgcttg
    12001 tattgtccta atctttccct attctttatc aacaacggga gtcgtttgag tcataccacg
    12061 aatttgtgat aactcaaaca gggcaaaacg atactcaacg aagttaaaca cttgatttgc
    12121 aagagcaaga cgaaagaggc tgattgcctc atctttatga tctaatttga gttgttgttt
    12181 tgctaagtag aaatacgttt ctgtcagtat ttctgcatat tgtgagctat tttccttagc
    12241 gtcacgttcc attatagcac gaacttgagc taaattgagc ttccctaaaa aataatttac
    12301 gatatttgtt ccccagtaat ccgaagaaag attattagct cgcttttgta aattattttt
    12361 agcttctgtt ggtgtaaatt ccagctcatt aaaatagagc cataatgctc gataaggatc
    12421 tttcttatct tcttcataaa aatggagaag atcacgctgg gcttcagaat atctgccgct
    12481 ataatagaaa gccaaacctc gattgagata ggtgtagcta tattcccgat ctaattccaa
    12541 tacggcatta aacgcatcaa tcgaactgtc gtaatcgcct tccagcagca gatacagccc
    12601 catatagtta taagctgccg ccatacgttg attgagcgaa atggcttgag caaaatcata
    12661 acgggctaac gaccataaac ctaaactgtc gtaaataacg cctctttcaa aatagaggtc
    12721 tgcttgctca gagggcgtta atggggcttc ttccaatact tggctgagtc ttaccaccat
    12781 tgcctcttgt tcaaagcgaa gttgaggatt aagttctgcc aatgctaagt ttttaattga
    12841 aaccaaatcg gcataccgac tggtacagcc gcttagcatt aaaacagaaa ttaaattcag
    12901 taataagaaa cggattcgaa acaacttaaa aagttgtacc attacagcat atccctcaat
    12961 taaggaaaat taaaaactga ataacggaca ctcaaagtcc gttattcgcc tttattattg
    13021 aactagaaat tattttcttg ttctgtttct accacatttt cagctacagt ttcttctgca
    13081 tttgcctcgt tggtattatt gatgtctttc atcgtcagac gaatgcgtcc ttgacggtca
    13141 atttctacca ctttcacttg tacttcttga ccaacggtta agtagtccgc tacacgctca
    13201 acacgttcgt tggtgatttg tgaaatgtgg actaaacctt ctttgccacc taagatggaa
    13261 acgaatgcac cgaagtccac cacacgggtt actttaccgt tgtagatttg gtttacttcc
    13321 acttcggcaa cgatctcttc aatacgagcc attactgctt tcgctgcatt gccgtcagtt
    13381 gccgcaattt tcaccgtacc gtcatcatca atgtcgatag aagtattggt ctcttcggtt
    13441 aaagcacgaa ttgttgcacc gcctttacca atcacatctt tgattttctt cggatcgatc
    13501 ttcattgtgt gaatgcgtgg ggcatagtca gaaatatctg cacgaggtgc cggaatggct
    13561 tgttccatta cacctaaaat gtgcattctt gcacctttag cttggtttaa ggcaatacgc
    13621 ataatttcag gggtgatccc ttcgattttg atgtccattt gcagcgcagt cacaccggta
    13681 cgggttcccg ctactttaaa gtccatatcg cctaagtggt cttcatcacc taagatgtca
    13741 gaaagtacca cgaatttctc gtcttctttc acgagcccca ttgcgatacc ggcaaccgct
    13801 gctttgattg gcacacctgc gtccatcaac gcaagagacg caccacacac agatgccatt
    13861 gaagaagaac cgttagattc agtgatttca gacaccacac gcactacata cgggaactct
    13921 tcagcggttg gcatcacggc taatacgcca cgttttgcta aacgaccgtg accgatttca
    13981 cggcgttttg gcgagccgat acgaccggtt tcgcccacag agtatggagg gaaattgtag
    14041 tggaataaga aacggtcaga tttttcgccg gtcaattcgt caatgatttg ggcatcacgc
    14101 tctgtgccca atgttgctac tgctaatgct tgggtttcgc cacgggtgaa aagagcagaa
    14161 ccgtgggtgc gtggtaacac actggtgcaa atatccaatg cacgcacggt atccaccgta
    14221 cggccgtcaa tgcgtggttc gcctgcaata atacggctac gcacgatttg gctctctaat
    14281 gcggtgatga tgtcgatgat agtcccttca gaaacagttt catcttctgc ggtaagttgt
    14341 gcaatcacct ctgctttaat cgcatcgatt tgctcgtaac gaacttgttt ttctacgata
    14401 cgataagcat cgccaaggcg tgtttctgct aatgctttta ctttgttgat taaatctgta
    14461 tttggctctg gtgcaaccca atcccaacgt ggtttgcccg cttctttaac aaattctttg
    14521 atgttttcga ttacaacctg ttgttgctcg tggccgaaca ccaccgccgc taacatttgc
    14581 tcttcggtta agatatccgc ttcagattcc accatcaaca cggctttgtc tgtacctgaa
    14641 accactaaat ctaagcggct gattttttgc tcgctggtgg ttgggtttaa tacgaattga
    14701 tcgttgataa aaccgacacg agccgcaccg attggaccgt taaacggcac gccggataat
    14761 gaaagggcag ccgatgcacc gatcatcgca accagatcag gactgatttg tgggtttacc
    14821 gatactacgg tcgcaatcac ttgaatttcg ttaaagaaac cttctgggaa aagtggacgc
    14881 acaggacggt cgatcaagcg agcgattaag gtttcacctt cgctaggacg tccttcacgt
    14941 ttgaagaaac cgcccggaat acgaccggct gcgtaagtac gctcttgata atctacggtt
    15001 aatgggaaga aatcttgccc ttcttttacg tcttttttcg ctactacggt aacaaatacg
    15061 gttgtgtcgt ccatacttgc cattactgct gccgttgctt ggcgtgcgat agcaccggtt
    15121 tctaaggtca cggtgtgctg accgtattta aactgtttta caattggagt cattgaaatt
    15181 ttccttttaa agaatttact attattgtcg ttttatttct ctaaattgcg actagcaaaa
    15241 aggcttttaa gtaaaacatt tttgatagcc gcctctcaat aacaagaaat aaaacttgtc
    15301 tagtatagcg tgatttttat aaaaaatcgc ctattatttt gatcttgcac ctcagttata
    15361 aagaaattca aaacttcagt gtaaaatggg gattagtttg tgaaaagcct tgtgaaaata
    15421 gtttgattgc atcgctattt ttttattaga ggtagtttaa aactaaatct gcttccttta
    15481 ccggcttcac tttcaatttc cagtgtggaa tggtgctgtt caagagcgtg tttgacaata
    15541 gccagaccta aaccgctacc gccggttttg ttgctacgag attcgtccac acgatagaaa
    15601 cgttctgtca gatgggtaat atgatgggca tcgataccaa taccgtcatc ttgcacgctg
    15661 aaaatcgcag tattcggctc ttgattatca cgttgacaac atatttgaat ggtaactcct
    15721 tcaccggcgt gccgtattgc attgtaaatt aaatttgata cagcgctttg gagttgctct
    15781 tgatctcccc ataccgttaa attaggctca atatcaaaca gtatttgctg attttggctt
    15841 aaaatctcgg tatttttttg tatggcggag attaacgccg acatctggac ctcattgtgt
    15901 tcggaatcat tggaatgctc gattttaacc aaaagtgaga gttggcgaag caggttagtc
    15961 atacgttgac tttgctcttt catcgcattg agcgcttttt gctgtaatgc catattatgc
    16021 ggctcgtttt ccagcatttc caaataacct tgtaatatgg taagaggtgt tcgcagttcg
    16081 tggttcatat ttgccaaaaa ggtttgtcgt gagtgcataa ggcggacaaa agaggttaca
    16141 tctcgtgcga caataagtct ggagttactg tcatatcgat tgagattcaa ttcaatatag
    16201 cgtttattat gagtcagcag taccaatggg cgatggtgtc gttgttggcg gaaatagctt
    16261 ttaaattcag gataaaaaat cacattaaaa atgcttttat ttgatttttt gtcccaataa
    16321 aactcaaata gctcttgtgc aacattattg caccaagaaa tctccccgtt ttcttggcaa
    16381 ataatgatcg catcgggtaa gtattgaata tgcttattta attttgataa cagacgtaag
    16441 gttttgattt tatcttggcg taaacgttcg tgatagaatg cggcactttg agataaatgc
    16501 tccattgtcg ttacttttga cctgccgctt tgctcattag gtctgagtaa ctgaaggaga
    16561 gaagattcgg tgtggtgatg ccaaataagt agaaccagta aacaaaaact aaaccagaaa
    16621 aaataagcag ggaaaaacag attgaatacg ccggcaacgg ctgctgccag caaaagttcc
    16681 aataaaaagt gtttaagtga gagcttaact ttcattatta gtcctgaaaa tggttggaaa
    16741 aacggtatcc cgagccacgt acggtttgaa tataacgctc aaaaccatag ggttcaagac
    16801 tcttacgcaa tcgccgaata taagagtcta ccgtgcgatc ctcaacataa atatcattac
    16861 cccaaataaa atcaagcaac tgttcacgac gatacacttt ttcagggtga gtcattaaaa
    16921 agtgaagcag tttatattcc gtgccgctta atttcacttc ctgttcggca accaaaaccc
    16981 gttgtgcctg ttgatcaaga atcaatccgt ctatattgat gagattgctt ggcggatcat
    17041 agcttcgccg ccatactgct tcaatccggg caagcaacac ctgtggtgaa aacggtttgg
    17101 taatgtagtc gtctgcaccg gcattcagac cggtaataca gtcttcttcg ctactgcggg
    17161 ctgttagcat aatgattgga attttttcgg tttcaggctg tttttttagg tatttaatta
    17221 aatggatacc cgaacgcccc ggcatcatcc aatccagtaa aataagctcg ggtttttcgc
    17281 ccagtttatt gatagcactt tggtagtctt ccgcttcaat tacctgatat tgtttgctga
    17341 gatagagact tagcatttca cgaatagcac gttcgtcttc aacgatcaga attttgttat
    17401 tcattcttcc tctccgatgc ggtgtgacaa gcggtcgatt tatcgcagaa atttgcaaat
    17461 tttttactaa aaccgaccgc ttgcagatta ccccatttta cctttaatgt aatcttccgt
    17521 ctgccggaat tttggtttgt cgaaaatttg tttggtatca ccgaattcaa tcagctcgcc
    17581 tagatacata taagcggtat agtcagaaca gcgggctgct tgctgcatat tgtgggtaac
    17641 tatcgctacc gtgtagtcgt gcttgagttc gttgataagt tcttcgattt tcatagtcga
    17701 aatcgggtca agtgcggagc agggctcatc cagcagtaac acctcgggtt tcactgcaat
    17761 acctcgtgca atacagagcc gttgctgttg cccgccggag agactgtcac cattttggtt
    17821 taatttatgc tttacctcat tccataaagc cgctttggtt aatgcccact ctacacgatc
    17881 gtttagctcg gatttcggca atttttcaaa cagacgaata ccaaaagcaa cattatcgta
    17941 aatggacatc gggaatgggg tcggtttttg gaaaaccata ccgactttgg ctcgaataat
    18001 cgaaatatcc gtatcggagg tgagtagatt ctctccatca agattgattt cccccgttgc
    18061 acgttgattc gggtagagct caaacattcg gtttagggtt cgcagtaatg ttgattttcc
    18121 acaaccggaa ggaccgataa atgcggtcac tttatttttg gcaatacgca tattgatatt
    18181 tttcagagcg tggaaatcgc cataataaaa attgaggttg ttaatatgta attttgtctc
    18241 taaatccgtt ggtaacatat agagtcctta ttttgttttg ctgaaataca gacgagtgat
    18301 gatattaaga gaaagcacaa acagagtaat aagcattgca cctgcccaag ccaatgtatt
    18361 ccagtcagcg aacgggctgg ctgcgtattg ataaatcacc acagggaggt ttgccattgg
    18421 tgcattcata tctaaagagg caaactggtt ggataatgcg gtaaacaata gcggtgcggt
    18481 ttctccggaa atacgggcaa cagcgagcaa cacgccggta ataatgccgg agcgggcggc
    18541 acgataagag atcattgtaa ttaccctcca tcgtgggcag ccgagagccg cagctgcttc
    18601 acgcagatta ttaggcacaa gattgagcat actgtcggta gttcgaacaa caatcggaat
    18661 cactaatacc gccaatgcta atgagcctgc ccagcctgaa tagtgtttaa cctgtgcgac
    18721 ataaatcgca taaataaata agccgataat aatagaagga gcagagagca acacatcatt
    18781 caaaaaacgg gtgaattttg ccaatttggt ataacgcccg tattcgctca agtaagtgcc
    18841 ggctaaaata ccgattggtg ttgcaatcag tgttgcggta ctgacaatca gtatagagcc
    18901 gacaattgca ttacgtaatc ctcctgtttc atttggtgca ggagtcgggc gggtaaacag
    18961 ttcccaagac agtgcaggga tacctttttg gagtaaagta acaataatcc agaccagcca
    19021 aaataagcca aataatacag cggaataggc aagacttaac atcaagacat tttttatttt
    19081 tcggcaataa aagcgtcggt tttggtaatt tttcattctc gttttccttc ctgtttaccc
    19141 attcgtgcga ttaataaacg tgaagcggct aaaacaatcg aagtaataag gaacagaatt
    19201 agccctaggc tcatcaacgc tgatttttgt aatccgccgg cttcattaaa ttcattggcg
    19261 atagcagaag cgatggaggt tgaaggggaa aataccgaat caggtagcat aaaggcatta
    19321 ccgatcacaa aggtaactgc cattgtttcg cctaatgctc gacctaaccc gagcataatt
    19381 gcaccgatta ctccggtttt ggtgtaaggt agcacgactt tccaaataac ttcccaagtg
    19441 gttgagccta aaccgtaagc agactctttc agtaaaggcg gtacaacact gaaaacatca
    19501 cgcataattg aggcaataaa gggaataatc ataatcgcca ataccaagcc ggcactgaat
    19561 agcccgatcc cgaaaggagc tccgctaaaa agcataccga taaagggaag ctgaccaaat
    19621 gtatctatca aatacggttg cacatattct tgaaataagg gtacaaatac aaacagcccc
    19681 cacataccgt aaataataga gggaatagcc gctagcattt ctaccgctgt gccgacaggg
    19741 cgttttagcc attgcggtgc aagttcggtt aagaaagtcg caatgccgaa cgagaccgga
    19801 acggcaatga ctaatgcaat gccggcagaa atcaatgtgc cgataatcgg cactaatgca
    19861 ccgtatcggt cattcacagg gttccactcg ttttcccata ggaatgatac cccgaatcgg
    19921 cttaatgctt cccaactgcc aagcaataat gaaaccagca ccaccaccaa caaggcaaaa
    19981 accagcaaag caaagaaacg ggttgtgtga tgaaataacc cctctaccca aggatggttt
    20041 aagcatttgt tatcaatttt atgtttatgc atagtgacaa ctcttttgca aaatgttgtg
    20101 aaaaaacgac cgcttgttgt tagttaagct ccatacaagc ggtcgttttg cattagtaga
    20161 gcgaatttcc ttgtccatct ttaacttccg ttttccattg agtttggatt ttctctacta
    20221 cattatccgg tagaggcaca taatccagtt cggcagccgc atctttaccg tgcttaaatg
    20281 cccagtcgaa gaatttaaat acccctttag tttgctctgg tttgtcgcta tgttgatgaa
    20341 tcaagataaa actggcggcg gtaatcggcc aggctttttc tcccgcttcg ttggttaaaa
    20401 taacgcccat accggctgtt tggctccaat cggcgttagc agcggcagca gcaaacgttt
    20461 cacgggaagg ctgaacaaat ttaccatctg cattttgcat agaaacccaa gccagagcat
    20521 tttgtttagc ataggcatat tctacgtaac caatagaata cttgagctgt ttcacataag
    20581 ctgcgacacc ttcatttcct tttccgcctt gtccgaccgg ccatttcacc gattttcctt
    20641 cgccgacttt ctccttccat tcggcagaga ctttagaaag atagtttgtc caaccgaaag
    20701 ttgtgcctga accgtctgag cggcgtacga ctaaaattgt ttttgccggc agggcgatat
    20761 cttgattaag tgcgacaatt gccggatcgt tccattgtgt aattttgcct aggaatatat
    20821 cggcaagaac tttaccggac agtttcagtt cgcccgattt aagttcagga atattgacaa
    20881 ccggtacagt tcccccaatg atggcgggaa attgcaaaag tttgtgttct gctaatgttt
    20941 cgcctttcat cgggtcatca gaagcaccga aatcaattgt tttggcaata atttgttgct
    21001 gaccgccacc ggaaccgata gattggtaat tgattttatt accggtctct ttttcatata
    21061 aacctgccca tttggcgtag ataggataag ggaaagaagc accggctcct gtgatggttt
    21121 gagcatttgc tgcgacagaa agtgaaaaag aaatgcctaa aacggtaagt agtttaaatc
    21181 gtttggcaat catattgttc tccttaaagt tagcgtgagt taatttcacg tgcttagtgt
    21241 agaaaaagaa tatgacaaaa tgatgacaat ggtaaaaaaa tcagaaaaaa cgaccgcttg
    21301 tgtttcaggc tagactaaac aggctaaatc gtagaaaata gccctcgttt ttttaatata
    21361 aatatcgata aaaaatgacc acagaaatca attatgaagg cattgaacag atgccgatta
    21421 agcgttttac cgaagatgct tacctcaatt attcgatgta tgtaattatg gaccgggcat
    21481 tgccgtttat tggcgatggc ttgaaaccgg tgcaacgccg tattatttat gcgatgtcgg
    21541 aacttgggct aaacgcctcg gcaaagtata aaaaatcagc ccgtaccgtg ggggatgtat
    21601 taggtaaatt ccatccgcac ggtgatagtg cctgctataa agcaatggtg ctaatggctc
    21661 aaccgttctc ttaccgctat ccgttagtgg acggacaagg caactggggg gctccggacg
    21721 atccgaaatc cttcgctgca atgcgttata ccgaatcgaa actgtctaaa attgcagaaa
    21781 ttttattggg cgagttaggg caaggaacgg tggattatca gccaaatttt gatggctcgt
    21841 tggaagaacc gaaatatctg ccggctcgtt taccgcatat tttgttgaat ggcacgatgg
    21901 ggattgcggt gggaatggca accgatattc caccacacaa tattaatgaa ttggctgatg
    21961 ccagtgtgat gttgctggat aacccgaaag caacgcttga tgatgtacta agcgtggtac
    22021 aagggccgga ttacccgaca gaggctgaaa tcatcacacc aaaagcggaa attgccagaa
    22081 tgtatgagca ggggcgtggt tctattaaaa tgcgtgcggt gtggaaaaaa gaagagggtg
    22141 aaattgtgat ttcagccttg ccgcaccaag cctctccttc aaaaattatt gagcaagtag
    22201 caacccaaat gcggaataaa aaactaccga tggtggacga tattcgtgat gaatctgacc
    22261 acgagaaccc gattcgcatt gtgattgtgc cacgctctaa tcgcattgat tttgatgcgt
    22321 taatggatca cctgtttgcg acgaccgatt tggagaaaag ctaccgagtc aatatgaata
    22381 tgattggctt agacggcaag ccggcagtga agaatttgct gactattctc aatgagtggc
    22441 tgagttttag acgtaccact gtcactcgcc gcctgaatta ccgattagat aaaattttaa
    22501 accgcttgca tattttagac ggtttgatga ttgcatttct caatattgat gaagtgattg
    22561 agattattcg caatgaagat gagccgaaag ccgagttaat ggctcgtttt aatctgaccg
    22621 atgtgcaagc agaggcgatc ctgaacttac gtttacgcca cttagccaaa ttggaagagc
    22681 atcaattaca ggcggaaaaa tccgaactgg aaaaagaacg tgatgaattg caactgattt
    22741 taggctcgga acgccgtttg aacagcctga tcaagaaaga gattcaagcc gatgccaaag
    22801 catttgccag cccacgccgc tcaccattgg ttgaacgagc ggagtctaaa gcgattgcgg
    22861 aaagtgactt gactccaacc gaagatgtga ctgtgatttt gtctgaaaaa ggctgggtac
    22921 gttgtgcgaa aggacacgat attgatgttc aagccctaag ccatcgagcc ggagatggtt
    22981 atcttgccca cgcaaggggt agaagtaatc agcctgtggt atttttagac agtacagggc
    23041 gagcttatgc tctcgatcca acttcactgc cttcggcacg ctcgcaaggc gaaccgctta
    23101 caggcaaaat caccctaccg gaaggtgcag tagtgcagca agtgctaatg gcaagtccag
    23161 aaactaaagt gctaatggca tccgattcag gttacggctt tatttgcacc tttgcagatt
    23221 tagtttctcg taataaagcc ggcaaagcgg ttatttcttt aaccgaaaat gcaaaagtac
    23281 tgccgccgca attattggaa aatgatgaaa atttatcgct tgtagcgatg agtaatgttg
    23341 gcagaatgtt ggttttcccg gtgagtgaat tacctcaact ttccaaaggt aaaggcaata
    23401 aaatcatcaa tatttccgcc gcagcggcaa aatccggtga tgaatattta gcccgtttat
    23461 tagtcatcaa accaaccaac tcgctggtct ttgtgtccgg taaacgcaaa atcacattaa
    23521 aaccgagcga tgttgataac taccgtggcg aacgagcaag aaaaggctca cagctagtga
    23581 gagggcttag taccaattca acggtagaga ttgttgagta aagagaagaa gcggttaggg
    23641 ggtaaatcca acaattttgc cccaaataac cgcttgcaat ggagttattg cttattcaaa
    23701 taagcctttg tgaagcgaac gaaccacatc gtctgcttct gcatttttca ctaaggtaca
    23761 aacattattg ctgcttgctc catagctgat taggcgaatg ttgtaattct caagagtgtg
    23821 gaataatttt ttcgccacac cggactgagc gtgtaagttg ttgccgataa tagcgactaa
    23881 agcgaggtcg ctttctactt gcacattgca atatgcgtta agctcatcga gtaattccgc
    23941 tgataacata tctgcacctg aagaggctga gcccgtttta tctagggtca atgcaacgct
    24001 gacttcggaa gtggtaatca catcaaccga aattttgtgt ttcgctaaaa tcgcaaatac
    24061 attcgctaag aaaccttgtg cgtgtagcat tgaaaggctg gaaagcgtga gtaaaatttg
    24121 gttgcggcgt aatgcaatcg cacggaaagt cgggcgtggt tgtggatcac gggttaccca
    24181 agtgccgcct tgttccggtg ctttgcttga gccaacatat acagggatat tgctacgcac
    24241 tgccggtaat aaggttgctg ggtgtaatac tttcgctcca aatgttgcca tttctgccgc
    24301 ttcgttaaat gccattgtgt caatgcgttg agcgttcggt acaacacgag gatcggtggt
    24361 ataaatcccc ggtacgtctg tccaaatgag tacatcgtta gcatttaata cttctgctaa
    24421 caatgcagca gagtagtctg aaccgccacg tcctaaagta gtggttttgc cttcatcatc
    24481 acgaccaata aagccctgtg taatcacaat tttgcctgat gcgattaatg gcttaatcac
    24541 attgtctgat tgttgctggg ttttctcgtc atttggtgct gcttttccat aatggctgtt
    24601 tgttgccaca acgtcacgca catctaccca tactgccggg tgtccacgtt caattaataa
    24661 ttgcgtgaag attttggtgg acatcatttc cccatggctg attaactcat cacttaaggc
    24721 agctgaagta gcaaggctgg ctgattctgc taatgtttca atacgttcta ataattcgtc
    24781 gatttccgct ttaacggcat cttgatgttg taatttttca ataatattgt attgaatttg
    24841 gcggactgct gcgatgactt catcacggtg ttctttttca cagccgttag caagttccac
    24901 taagtaattg gttacgccag cagaggcaga aagtaccacc acacgagtat ttgcatcagc
    24961 aattacaata ttggcagaag aggtcattgc atcaaaattt gcaacacttg taccaccaaa
    25021 tttagccaca gaaagatgag acataataaa aatttcctta aaacaaaaat agataaatat
    25081 tgtgttaggg gatattcgga aaggaaattt gagtagatta tacggtttta ttgttgaacc
    25141 aattaatcag agcactccat ttaatatggt gaaataacct attaaatgac agctgatagg
    25201 attcaaccta ttcagccgat gttaattcca gtctagtgaa ttcacacctc ggcaatcact
    25261 cccatcactt aattctcaaa cggccctagt tgcctaaaat caagttgcct gagtgttgca
    25321 cctctcccgt aatggcaagc ccattactct ttttcaacag tattgaaaag tgtgcataga
    25381 aataccgttt tattaatgt
//
LOCUS       DANLXB010000006        25235 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLXB010000006 DANLXB010000000
VERSION     DANLXB010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25235
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            27..530
                     /locus_tag="PXD41_000164"
     CDS             27..530
                     /locus_tag="PXD41_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL6287733.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            546..3407
                     /locus_tag="PXD41_000165"
     CDS             546..3407
                     /locus_tag="PXD41_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL6287734.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            3482..5608
                     /locus_tag="PXD41_000166"
     CDS             3482..5608
                     /locus_tag="PXD41_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL6287735.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            5620..7056
                     /locus_tag="PXD41_000167"
     CDS             5620..7056
                     /locus_tag="PXD41_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL6287736.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            7297..8295
                     /locus_tag="PXD41_000168"
                     /pseudo
     CDS             7297..8295
                     /locus_tag="PXD41_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            8312..9055
                     /locus_tag="PXD41_000169"
     CDS             8312..9055
                     /locus_tag="PXD41_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6287737.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            9210..10268
                     /locus_tag="PXD41_000170"
     CDS             9210..10268
                     /locus_tag="PXD41_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL6287738.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(10389..10931)
                     /locus_tag="PXD41_000171"
     CDS             complement(10389..10931)
                     /locus_tag="PXD41_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6287739.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(11083..12594)
                     /gene="glpK"
                     /locus_tag="PXD41_000172"
     CDS             complement(11083..12594)
                     /gene="glpK"
                     /locus_tag="PXD41_000172"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL6287740.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            complement(12598..13383)
                     /locus_tag="PXD41_000173"
     CDS             complement(12598..13383)
                     /locus_tag="PXD41_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL6287741.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            13596..13955
                     /locus_tag="PXD41_000174"
     CDS             13596..13955
                     /locus_tag="PXD41_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL6287742.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            complement(14003..15325)
                     /locus_tag="PXD41_000175"
     CDS             complement(14003..15325)
                     /locus_tag="PXD41_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6287743.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            15474..16298
                     /gene="dapF"
                     /locus_tag="PXD41_000176"
     CDS             15474..16298
                     /gene="dapF"
                     /locus_tag="PXD41_000176"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL6287744.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            complement(16469..17011)
                     /locus_tag="PXD41_000177"
     CDS             complement(16469..17011)
                     /locus_tag="PXD41_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL6287745.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            17135..17458
                     /locus_tag="PXD41_000178"
     CDS             17135..17458
                     /locus_tag="PXD41_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL6287746.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            complement(17521..18966)
                     /gene="xylB"
                     /locus_tag="PXD41_000179"
     CDS             complement(17521..18966)
                     /gene="xylB"
                     /locus_tag="PXD41_000179"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL6287747.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(19119..20438)
                     /gene="xylA"
                     /locus_tag="PXD41_000180"
     CDS             complement(19119..20438)
                     /gene="xylA"
                     /locus_tag="PXD41_000180"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL6287748.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            20680..21681
                     /gene="xylF"
                     /locus_tag="PXD41_000181"
     CDS             20680..21681
                     /gene="xylF"
                     /locus_tag="PXD41_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6287749.1"
                     /translation="MKLKSKLLAIATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            21748..23262
                     /gene="xylG"
                     /locus_tag="PXD41_000182"
     CDS             21748..23262
                     /gene="xylG"
                     /locus_tag="PXD41_000182"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL6287750.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            23266..24393
                     /locus_tag="PXD41_000183"
     CDS             23266..24393
                     /locus_tag="PXD41_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL6287751.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(24409..24939)
                     /locus_tag="PXD41_000184"
     CDS             complement(24409..24939)
                     /locus_tag="PXD41_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6287752.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(24955..25218)
                     /locus_tag="PXD41_000185"
     CDS             complement(24955..25218)
                     /locus_tag="PXD41_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6287753.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
BASE COUNT         7481 a         5071 c         5415 g         7268 t
ORIGIN      
        1 tttagaataa ttatcgagtg caaattatga atcaatctta ttttaactta ctaggaaaca
       61 ttacttggct atggatgaac tcctccctcc acaaagaatg gagctgtgaa ctactagcac
      121 gcaatgtgat tcctgcaatt gaaaatgaac aatatatgct acttatagat aacggtattc
      181 cgatcgctta ttgtagttgg gcagatttaa accttgagac tgaggtgaaa tatattaagg
      241 atattaattc gttaacacca gaagaatggc agtctggtga cagacgctgg attattgatt
      301 gggtagcacc attcggacat tctcaattac tttataaaaa aatgtgtcag aaataccctg
      361 atatgatcgt cagatctata cgcttttatc caaagcagaa agaattaggc aaaattgcct
      421 actttaaagg aggtaaatta gataaaaaaa cagcaaaaaa acgttttgat acatatcaag
      481 aagagctggc aacagcactt aaaaatgaat ttaattttat taaaaaatag aaggagacat
      541 cccttatggg aactagactt acaaccctat caaatgggct aaaaaacact ttaacggcaa
      601 ccaaaagtgg cttacataaa gccggtcaat cattaaccca agccggcagt tctttaaaaa
      661 ctggggcaaa aaaaattatc ctctatattc cccaaaatta ccaatatgat actgaacaag
      721 gtaatggttt acaggattta gtcaaagcgg ccgaagagtt ggggattgag gtacaaagag
      781 aagaacgcaa taatattgca acagctcaaa ccagtttagg cacgattcaa accgctattg
      841 gcttaactga gcgtggcatt gtgttatccg ctccacaaat tgataaattg ctacagaaaa
      901 ctaaagcagg ccaagcatta ggttctgccg aaagcattgt acaaaatgca aataaagcca
      961 aaactgtatt atctggcatt caatctattt taggctcagt attggctgga atggatttag
     1021 atgaggcctt acagaataac agcaaccaac atgctcttgc taaagctggc ttggagctaa
     1081 caaattcatt aattgaaaat attgctaatt cagtaaaaac acttgacgaa tttggtgagc
     1141 aaattagtca atttggttca aaactacaaa atatcaaagg cttagggact ttaggagaca
     1201 aactcaaaaa tatcggtgga cttgataaag ctggccttgg tttagatgtt atctcagggc
     1261 tattatcggg cgcaacagct gcacttgtac ttgcagataa aaatgcttca acagctaaaa
     1321 aagtgggtgc gggttttgaa ttggcaaacc aagttgttgg taatattacc aaagccgttt
     1381 cttcttacat tttagcccaa cgtgttgcag caggtttatc ttcaactggg cctgtggctg
     1441 ctttaattgc ttctactgtt tctcttgcga ttagcccatt agcatttgcc ggtattgccg
     1501 ataaatttaa tcatgcaaaa agtttagaga gttatgccga acgctttaaa aaattaggct
     1561 atgacggaga taatttatta gcagaatatc agcggggaac agggactatt gatgcatcgg
     1621 ttactgcaat taataccgca ttggccgcta ttgctggtgg tgtgtctgct gctgcagccg
     1681 gctcggttat tgcttcaccg attgccttat tagtatctgg gattaccggt gtaatttcta
     1741 cgattctgca atattctaaa caagcaatgt ttgagcacgt tgcaaataaa attcataaca
     1801 aaattgtaga atgggaaaaa aataatcacg gtaagaacta ctttgaaaat ggttacgatg
     1861 cccgttatct tgcgaattta caagataata tgaaattctt actgaactta aacaaagagt
     1921 tacaggcaga acgtgtcatc gctattactc agcagcaatg ggataacaac attggtgatt
     1981 tagctggtat tagccgttta ggtgaaaaag tccttagtgg taaagcctat gtggatgcgt
     2041 ttgaagaagg caaacacatt aaagccgata aattagtaca gttggattcg gcaaacggta
     2101 ttattgatgt gagtaattcg ggtaaagcga aaactcagca tatcttattc agaacgccat
     2161 tattgacgcc gggaacagag catcgtgaac gcgtacaaac aggtaaatat gaatatatta
     2221 ccaagctcaa tattaaccgt gtagatagct ggaaaattac agatggtgca gcaagttcta
     2281 cctttgattt aactaacgtt gttcagcgta ttggtattga attagacaat gctggaaatg
     2341 taactaaaac caaagaaaca aaaattattg ccaaacttgg tgaaggtgat gacaacgtat
     2401 ttgttggttc tggtacgacg gaaattgatg gcggtgaagg ttacgaccga gttcactata
     2461 gccgtggaaa ctatggtgct ttaactattg atgcaaccaa agagaccgag caaggtagtt
     2521 ataccgtaaa tcgtttcgta gaaaccggta aagcactaca cgaagtgact tcaacccata
     2581 ccgcattagt gggcaaccgt gaagaaaaaa tagaatatcg tcatagcaat aaccagcacc
     2641 atgccggtta ttacaccaaa gataccttga aagctgttga agaaattatc ggtacatcac
     2701 ataacgatat ctttaaaggt agtaagttca atgatgcctt taacggtggt gatggtgtcg
     2761 atactattga cggtaacgac ggcaatgacc gcttatttgg tggtaaaggc gatgatattc
     2821 tcgatggtgg aaatggtgat gattttatcg atggcggtaa aggcaacgac ctattacacg
     2881 gtggcaaggg cgatgatatt ttcgttcacc gtaaaggcga tggtaatgat attattaccg
     2941 attctgacgg caatgataaa ttatcattct ctgattcgaa cttaaaagat ttaacatttg
     3001 aaaaagttaa acataatctt gtcatcacga atagcaaaaa agagaaagtg accattcaaa
     3061 actggttccg agaggctgat tttgctaaag aagtgcctaa ttataaagca actaaagatg
     3121 agaaaatcga agaaatcatc ggtcaaaatg gcgagcggat cacctcaaag caagttgatg
     3181 atcttatcgc aaaaggtaac ggcaaaatta cccaagatga gctatcaaaa gttgttgata
     3241 actatgaatt gctcaaacat agcaaaaatg tgacaaacag cttagataag ttaatctcat
     3301 ctgtaagtgc atttacctcg tctaatgatt cgagaaatgt attagtggct ccaacttcaa
     3361 tgttggatca aagtttatct tctcttcaat ttgctagagc agcttaattt ttaatgattg
     3421 gcaactctat attgtttcac acattataga gttgccgttt tattttataa aaggagacaa
     3481 tatggaagct aaccatcaaa ggaatgatct tggtttagtt gccctcacta tgttggcaca
     3541 ataccataat atttcgctta atccggaaga aataaaacat aaatttgatc ttgacggaaa
     3601 agggctttct ttaactgctt ggcttttagc tgcaaaatcg ttagcgttga aagcgaaaca
     3661 cattaaaaaa gagatttccc gcttacactt ggtgaattta ccggcattag tttggcaaga
     3721 taacggtaaa cattttttat tggtaaaagt ggataccgat aataaccgct atttaactta
     3781 caatttggaa caagatgctc cacaaattct gtcacaagac gaatttgaag cctgctatca
     3841 agggcagtta attttggtca cgtccagagc ttccgtagta ggtcaattag caaagttcga
     3901 tttcacctgg tttattccgg cggtgatcaa ataccgaaaa atctttctag aaaccttgat
     3961 tgtttcgatc tttttgcaaa tttttgccct aattacaccg ctattcttcc aagttgttat
     4021 ggataaagta ctggtgcatc gaggtttttc aaccttgaat atcattacgg ttgccttagc
     4081 tattgtgatc atctttgaaa ttgtactaag tggtttgaga acctatgttt tttctcatag
     4141 cactagccgt attgatgttg aattaggcgc taaattattt cgacatttat tatcactacc
     4201 catttcttat tttgaaaaca gacgagttgg agatacagtc gctagggtta gagaattaga
     4261 tcaaattcgt aatttcctta ccggacaagc attaacctcg gtgttagatc tcttattctc
     4321 ttttatcttt tttgccgtaa tgtggtatta cagcccaaaa ttaaccttgg taattcttgg
     4381 ttcattgccc tgctatattt tatggtcaat ttttattagt ccgattttaa gacggcgttt
     4441 agatgagaaa tttgcccgaa gtgctgataa ccaagcattc ttagttgagt cggtaacagc
     4501 catcaatatg attaaagcga tggcggttgc tccacaaatg acggatacat gggataaaca
     4561 gctggcaagc tatgtttcat caagtttccg tgtcaccgta ttagcaacca ttgggcaaca
     4621 aggtgtacaa cttattcaaa aaaccgttat ggtgattaac ctttggttag gggcacactt
     4681 agttatttca ggcgatctga gtattgggca attaattgcc tttaatatgc tatcagggca
     4741 agtgattgca ccggtgattc ggctggctca gctctggcaa gatttccaac aagttgggat
     4801 ttccgtcact cgcttaggtg atgttttaaa ctctccaacc gaacaatatc aaggcaaatt
     4861 atcactacca gaaataaaag gcgatatctc atttaaaaat atccgcttta gatataaacc
     4921 agatgcacca actattttaa ataatgtgaa tttagaaatt aggcaaggag aagtgattgg
     4981 gattgttgga cgttccggtt caggcaaaag tactctgact aaattactgc aacgttttta
     5041 tattcctgaa aatgggcagg ttttgattga tggacatgat ctagccttag ctgatccaaa
     5101 ctggctacgc cgtcaaatag gtgtagtgct gcaagataat gtgttattaa accgcagtat
     5161 ccgagaaaat attgcgctat cagatccagg aatgccaatg gagcgagtaa tttatgcagc
     5221 aaaattagca ggggctcacg attttatttc agaattgcgt gaaggttata acaccattgt
     5281 gggtgaacaa ggagcggggc tttcaggcgg gcaacgccaa cggattgcga ttgctcgagc
     5341 tttggtaaac aacccgaaaa tcctgatttt tgatgaggca accagtgccc tcgattacga
     5401 atctgagcat attattatgc aaaatatgca aaaaatatgc caaggcagaa ccgtgatttt
     5461 gattgcacat cgtttatcga ccgtcaaaaa tgcggatcga attattgtga tggaaaaggg
     5521 ggaaattgtt gagcaaggca agcaccacga attactgcaa aacagtaacg gactttattc
     5581 ctacttacac caattacaac ttaattaaga aggaaaacaa tgaaaatatg gcttagtggt
     5641 atttatgaat ttttcctacg ctataaaaac atttgggcag aagtatggaa aattcgtaaa
     5701 gaattagacc acccaaacag aaaaaaagac gaaagtgaat ttttaccggc acatttagaa
     5761 ctgattgaaa ccccggtttc taaaaaacca cgtctaattg cttatttgat tatgctattt
     5821 ttagttgtgg caattgtgct tgccagtgta agcaaagttg aaattgtggc gactgctccc
     5881 ggtaaattaa cttttagtgg cagaagtaaa gaaattaaac cgattgaaaa cgccattgta
     5941 caagaaattt tcgttaaaga tgggcagttt gtggaaaaag ggcaattatt agtcagctta
     6001 actgcattgg gttctgatgc agatatcaaa aagaccatgg cttcactttc tttagctaaa
     6061 ctggagaact atcgctacca aactttgctt actgccattg aaaaagagtc cttgccggtg
     6121 attgatttat ctagaaccga atttaaagat tcatcggaag aagatcgact acgtattaaa
     6181 cacttaattg aggagcaata caccacttgg caaaaacaaa aaacacagaa aactttagcg
     6241 tataagcgta aagaggctga aaaacaaaca atatttgcct atgtccgtaa atatgaaggt
     6301 gcaacacgta ttgaacaaga aaaattaaaa gactttaagg cactttataa acagaagtct
     6361 ttatctaagc acgaacttct tgcgcaagaa aataaattaa ttgaggctca gaatgagcta
     6421 gctgtttatc gctcaaaatt aaatgaatta gaaaatgatc tactcaatgt aaaagaagaa
     6481 cttgaattga tcacgcaatt ctttaaaagc gatgtgttgg aaaaattaaa gcaacatatt
     6541 gaaaatgaac gccaacttcg gctcgagtta gaaaaaaata atcaacgcag acaggcctcg
     6601 atgatcagag caccggtttc cggtacggtt cagcaactga aaattcacac tataggtggt
     6661 gttgttacga ctgctgaaac cttgatgatc attgtgccgg aagacgatgt gttagaggcc
     6721 accgctctgg ttccaaacaa agatatcggc tttgttgcag cagggcagga ggtgattatt
     6781 aaagtggaaa ctttccctta tacacgctat ggttatctaa ctggtcgaat taaacatatt
     6841 agcccggatg cgattgaaca acctaatgta ggcttagttt ttaatgcaac tatagctata
     6901 gataggaaga atctaacatc gcctgatggg cgaaaaattg atttgagttc aggtatgaca
     6961 ataactgctg aaatcaaaac cggtgaacgg agtgtaatga gttatttact cagcccatta
     7021 gaagaatctg tcacagaaag tttaagggaa cgctaatcga accaaaacaa agccataaaa
     7081 gccattttga gcttttatgg ctttattttt tagtccacaa gcggtcaaaa aagcccaatt
     7141 ttttacactt ttataacaaa ttgttctaac taaaaattac taattctttt cttttataag
     7201 acgaatcctc tattttcatt tcattaacat tgaactagaa aaggggattt atgagcctaa
     7261 gcattacgaa tctttctctt ggctaccgca aaaatcagca aaggcttatt tgaaaagcac
     7321 ggtgtgcagg tggaaaaacc ggtgatgttt cgcagctggg ctcagttggt ggaagccttt
     7381 ttaagtggca atgtgaacgt ggtgcatctg ctttcgccta tgagtttgtg ggcgaaatat
     7441 ggagcaaatg ctccggtgaa agcggtaatg tggaatcact tggcaggttc ggctttaacg
     7501 gttcgccctg aaatcaacag tattgccgaa ctctccggca aaacggtagc aattccgttt
     7561 tggtattcaa ttcataatat cgttttgcaa cgattattac gagaaaatgg cttgaaaatc
     7621 accgaaaaag agccgaaaag cggtgaagtg cgattaagtg taatggctcc gtcagatatg
     7681 gtggcagcgt tggcaagtga ggcaatttcc ggctttattg tggcagagcc gttcaatgcg
     7741 ttagcggaag ccaaaggtgt ggggaaggtg ctgcgtttta gtggcgatgt gtggaaagat
     7801 cacgcctgct gtttaaccct aatgcacgaa tacgatattc aacaccgccc ggaatgggtg
     7861 caaaaagtgg tgaatgtctt aaccgaagcc caagtgtcca cgcttgccaa ccgtgcagaa
     7921 accgctcaat tattggctcg gggcagcggc tacacgccgc acgatcaaaa agtgctggaa
     7981 aaggtactgg ctccaaccca agctcagtgg gataaatata tcgaaacagg ggcaattcaa
     8041 aaccctcagt ggcaccaaca gcgaatcggt ttccaaccgt atccgttcga ttcctatatg
     8101 gaagagctgg tcaaaatgct caaacagacc cacattgccg gcaataatgc gtttttacaa
     8161 cagcttgacc cggtagaggc agcgaaagcg attaacgagc cgacctttgt gcgaaaagcg
     8221 attgagcaag gcggttgggt tgaaaccttt aatttacaaa ccggttggac aagaaccgag
     8281 caaattagtg tataagcgat aggaacgaac gatgaaacag aaatatattt acggcttagc
     8341 cggtttatta ctgctacttt taggttggca gcttggcaca gccttgttaa gccaacggtt
     8401 gccgatggcg tcaatgttag ctccggcaaa aacctgggaa agttttactt ggctgatttc
     8461 ctccggcgaa atttttccgc acttatgggc gagtttgcaa cgcattgctg tcgggctact
     8521 cgctgcgtta gtgattggtg taccgctggg cttattgctc ggcttctcca agcaccttga
     8581 aatgctttgc acgccgtcat tccaactact acgtatgatt tcgccacttt cgtggatgcc
     8641 gattatcgtg atgttacttg gtgtaggcga tttgccgatt tattttttac tggcgtttgc
     8701 caccgtttgg tcgttgatta tttccaccac ctcaggggta aaaagcattg atccacaatg
     8761 gttacaactg ggtagagtaa tgtcggctac ccgcaaagaa ctgctgtgca aaattgttgt
     8821 accggctatt accggacacg ttctcaccgg tttacgtgtg gcggttggga ttgcgtgggt
     8881 ggtgctggta ccgtgcgaaa tgctaggcgt gaatcaagga ctcggctatt ttattttaga
     8941 cacccgagac cgattagcct attccgaact gatggcggta attataatta tcggcttaat
     9001 cggctgggcg ttggatagct taatccgctt ggctttagcg aaaggcggca gataaattga
     9061 caagcggtcg aaaaattgca tttttttgca aaaaatcgac cgcttgttta ttcccaaaaa
     9121 gcatattacc ttaatttatt ttatttctag ggcataaaaa agcgatttaa gatagcgaca
     9181 aagtaaacta attatacgag gtaaacacaa tgtcggttct ttcatcttct tttattcaat
     9241 ggcttcagca gaacgccgaa aatttagatc aatctaacga acgagcggat ttactcattc
     9301 cacaaattgc cgcactaggg ctatataaaa tcggcgtgcc ggaaacgctt ggcggcagcg
     9361 gtggcacttt ggttgatgcg atcaaagccg ttaccgaact gggtaatcac tcgctggctg
     9421 cggcatttgt ttcgtgggga catcgtacct ttatcgagca tattatcgcc tcaaaaaatc
     9481 ctattccccg ccaaagctat ttggcggatc tgctaaatgg caatttaacc gcaggaacag
     9541 gtttatccaa tgcgatgaaa tttctctccg gcattgaaga gttgaatgtg aatattcgtg
     9601 aagaaaacgg taaacgctat ttaaatggcc gcctgccttg ggtaaccaat ttacgttcat
     9661 accgctttgt tgctagtttc gttgccggtt ttcaagacga acgcaaaccg ctagtgattg
     9721 caattccctc caccgccaaa ggcttaaccc gcaccaaaga attggaattt atcgcattgc
     9781 aaggcacgaa tactacctct ctcgtatttg agaatgtgga attacaagat gaatggattt
     9841 tggctgatga cgcgcctgag tttttagcag ccactcgccc tgcgttctta ggtttacaat
     9901 ttggtttgcc ctttggcttg gttgaacgta gtttggcgga aatcgaaaaa tcgctccctt
     9961 tccgtgcaat tctcgcctct gagtggcaag ctcaagttga tgccctcaac gatattaaaa
    10021 ctcgtctgtt taatggctta aatgaagaag gttattttgt gcgtaatccg aaagagcttt
    10081 tccaagcgag aattgacatt gtcaatgtcg tcgcccaaac tattctgcta gaactgcaag
    10141 cgagtggcgg acgtggctat ctgaaaaatg atacttcagg cttcagccgc cgttggaaag
    10201 aagcggcatt tctgcccgtt gttacgccaa gtgcggtaca gctgagaatg gtgctggcga
    10261 atagttaagc ggataagaga caaattgttg cctcttttat tttgcaaaaa atagtctaaa
    10321 tataactgct tgcaataaaa ataaaaaagg atgcattttt tatgcttcct caattttacg
    10381 gctatctatt atgcaaaagg ctgcaattca gggttaattg gaatttcggc aatgttgtta
    10441 acgtagttac ataatgttgc caagctcacg cctaaaatca catcaatcgc attttgttgg
    10501 ttgtaacctg cggcaaaaaa ttcgtttaat tgggcttcgg ttaatttggc tttttgtaac
    10561 attactgcaa gggtgaagcg agccagagtg tctaatttgt tatcgtctat gcgagccgtg
    10621 gcacgtaaag catttaccac ttcttcaggc atttttaatg cttttaaggc gattttagta
    10681 tgacctgcca cgcagaaacc acagccgttg accactgctg cggtgatttg taccacttca
    10741 cgttcttcag cggttaagct gttacgacta ttaataccac ccacagtgcg gtaagtttcc
    10801 agtgctgttg gtgcgttggc taatacgccg atcagatttg ggataaaacc gtttgcttgt
    10861 tgcactgctt ttagggcttc ttgtgccgtt tcaggagcgg attcaatagt gtgaatttga
    10921 aattgagaca taaatgttcc ttatcaggtt gtttattggt gtggctcatc ataaagaaaa
    10981 ggctaattta gaacaaatca aaatcactat ttaatataac taaaagatct taaagggagt
    11041 atagttgcct atactccctt tgtttatgca caggttgcgt ttttactctt ctgcgtcttc
    11101 ttttgcccat tctaatgagc ggcgaacggc ttttttccaa cctttatagc gtttcgcccg
    11161 tttttcttgg tcgccgtccg gtgtgaaggt gcgttcaatt tccgctttgt ctttcagttc
    11221 ttccaaatct ttccagaagc cgacagcaat acccgcaaga taagctgccc ctaaagcagt
    11281 gacttctttc actttcggac gctcaacttt ggtgtctaaa atatcggctt ggaactgcat
    11341 taagaagttg tttgcggttg caccaccgtc cacacgtaac gcttgtagtt tcgctttgga
    11401 gtcagactgc attgcttcta acacatctcg ggtttggtaa gcgatagact ctagggtcgc
    11461 acgcacaatg tggttacggt ttgccccacg ggttaaaccg aaaattgagc ctcgtgcata
    11521 cggatcccaa tatggagcac ctaagccggt aaaggcaggt acaacataaa caccgttaga
    11581 gtcatcttct ttagtggcaa aatattcgct gtcaaagcta tcgtgaacaa ttttcagctc
    11641 atcacgcagc cattgaatag acgcaccggc aataaatact gaaccttcca acgcatattc
    11701 cggctcgcct tttgcgttac acgcaatggt cgttaataaa ccgttttcag attgaatcgc
    11761 agtgttaccg gtgtgcatca acataaaaca gcctgtacca taggtattct tcgcttgtcc
    11821 ttctttcacg cataaatgac cgtagagagc ggcttgttgg tcacctgcaa tacccgcgac
    11881 cggaatacgc acaccgcctt gaccgccgat attagtttgc ccgtaaactt ctgatgaatt
    11941 tttcacttca ggtaacattg agcgtggaat attgagcaat tccagcattt tatcgtccca
    12001 ttgtttggtg tgaatgttaa acaacatagt acgagaagcg ttggtgtaat cggtaacgtg
    12061 tacccgccct tgggttaatt tccacaccag ccaagtatcg accgtaccga acagcaattc
    12121 gccacgttct gctttttctc ttgccccttc tacgttatct aaaatccact tcactttagt
    12181 gccggagaag tacggatcga ctaccaagcc tgtcgtttta cgaatatatt cctcgtgtcc
    12241 gtctgctttt aatttatcgg taatatccga tgtgcgacga cattgccaca caatcgcatt
    12301 ataaacaggt ttaccggtct ctttttccca cacaatcgtg gtttcacgtt ggtttgtgat
    12361 cccgattgcg gcaatgctat ccggcttaat accggctttt gccaccactt catttaaggt
    12421 ggaactttgg cttgaccaaa tttccatcgg gttatgttct acccagcctg cttgcggata
    12481 aatctgggta aattcacgct gagccacttc aaccacattg gcatttttat ctaataaaac
    12541 cgcacgagag ctggttgtac cttggtcgag agcgatgata tattgttttt ccatagatta
    12601 ctcctgagta tttgctggaa gattgttatg aatgaggttt ttataacccc aagcaccgaa
    12661 taatgcaccg cagattgggg cgacaatcgg aatgatgaaa tacggaattt cttttccgcc
    12721 tgttaaagca atttcacccc aaccggcaag ataagcaaag agtttcggac caaaatcacg
    12781 agccgggttc atcgcaaagc cggttaacgg gccggttgct ccaccaatta ccgcaatcaa
    12841 taaaccgatg agtaatgcgg ctaaggcttt attcggcaag ccgtttttat catcgccaat
    12901 cgctaaaata gtggacatca acaccacagt aatcacaaat tcaacgatga aggcggtaac
    12961 caatgtaata ttagggtttg gataggtgga gaacacaccg gcaaagccaa cagtttcgcc
    13021 ccgagtaatg ccttgagcgg cttcggcggc agtaaagaga tcgctataca taaaataaat
    13081 cagtgcgaca gagcaaaacg ctccggcaac ttgggcgatg acatagggca aaattttatg
    13141 cttttcaaag ccgtagaatg cggcaagtgc tatagtgacc gcagggttaa ggtgagcacc
    13201 ggaaataccg gcagaaatgt agattgccat ggaaacacca agcccccaaa cgatggaaat
    13261 ttcccataaa ccgaaattcg caccggctac ctgagcagca gcaacacaac cagcaccaaa
    13321 gaaaagaata aaacctgtac cgataaattc gccaatacag gcattacgta aggatttgct
    13381 cataaagttt ctccttaaga tgaaaatgat tggaaagtga tgaaaaaatg tttgaatatg
    13441 aacatatttc ggagtgatat tgccaaagcg gcatttttta agcaaatagg aagtttcaaa
    13501 tttgtgaaat ccatcacatt atttttctaa atcactcatt tttaggtatg atgtgagaaa
    13561 acgttagatg aggaaaaatg atgtcttcaa tacttatgat ttcaatcggg gcggtacttg
    13621 gagctatgtg ccgctggcaa ttagccgttt ggctaaaccc gatactcagc caattcgcct
    13681 ttggtacttt agcagcaaat tggcttggtt gtttgttaat tggtattgca atggggttta
    13741 atttaggcga gagccagcgg ttgctgttca tcagcggttt tttaggcagt tttaccacct
    13801 tttccagttt ctctttagaa ctaacggaaa aactattagc agaaaaatgg gggcagtttg
    13861 tgacagtgct gagtttacat ttaatcggtg ggcttttgct tactttgata ggtgtaatgc
    13921 ttgcaagagc cgttacaagc ggtcgttttt gctgaaaatt ttgcaaataa aaaacctccc
    13981 aaacgggagg ttttgcgagc gattaaagta ggatattgga aagtaataaa ccaaatccga
    14041 tactgaaaat catactaagt aagcccggta acataaagct atggttgaaa atatatttac
    14101 cgatacgggt tgtgccggtg gtgtcgaagt caatcgaggc aataatcggg ccgtagttcg
    14161 gaatgaagaa gtagccgttt accgccacaa ataccccgat tagcaccggt gcaggaatgc
    14221 cgatagcaat cgctacaggg aataaggttg caaccgttgc cccttggctg tttaccaata
    14281 cggaaagtac gaataatgcg aaagcaaatg cccaaggtgc ggtttcaact aagcctgaaa
    14341 ccattgattt cacttcgtcc atatgacctt gcattaaggt atcgcctaac caagcaatac
    14401 cgaaaatcgc aatcactgca cgcataccgg cgtggaagac agaacctttg gtgatttcat
    14461 taccgtccgg tttgcagaag aagataatca acgcaccaat acttaacatc acaatttcaa
    14521 tcgtgtgagc catccccatc ggcttaccat caaacacagg gcgaagagct ggaattgcgc
    14581 ccattaatac cactaataat gcaccgaata ggaataagcc tactgataat ttcgcagtcg
    14641 gttttaacgg taattcggtt ggattggtag taatgtgatt ttctttcaca tattcagggt
    14701 cttgcaataa gcgttgataa tttgggtcgt cttttaattc tttgcccatt ttatttacaa
    14761 acacacaagc taaacctaag cccaataagg tcgcaggaat agtcacactt aacacgttac
    14821 ccaatgtaac accttgaggt tcaaggaagg caaccacagc aactactgcc gcagcaatcg
    14881 ggctggcgac aatcgcaaat tgtgaggcga ttactgccat tgaaagtgga cgctcagggc
    14941 ggataccgtt gtggcggctt acctctgcaa ttacaggtaa tacagaataa gcaacgtgac
    15001 ctgtaccggc aagcacggtg aatgtccaag ttacaagcgg tgcgataaag gtaatgtatt
    15061 tcgggttttt acgcaaaatg cgagtggcaa ttttgatcat atagtccaaa ccaccggctg
    15121 cttgcatggc tgctgcagcc gacacaaccg ccataatcat aaacattaca tcaatcggta
    15181 aaccggcagg ttttagccca aacccaaatg aaagaatggc taagcccaag ccaccgaaca
    15241 cccctaatcc gataccgcct acacgggcgc caaccaaaat gcatagtaac actatggcaa
    15301 attggataat aaacatcgca gacataattt tttgctccta aataagtaaa tgaaactctg
    15361 tgtttgaaaa aatctgcatt tttcatcaaa ttaatcggca cgtactatat caataaataa
    15421 aactaatctc tataatctaa atcaataaaa tttctaatta attaaggaat aatatgcaat
    15481 tttcaaaaat gcacggctta ggcaatgatt ttatggtggt tgatggtgta acccaaaacg
    15541 tttaccttac cgaagagatg atccgtacgc tttctgatcg ccatcgtggt atcggtttcg
    15601 accaactttt attggttgaa ccgccttacg accctgaatt agattttcac tatcgcattt
    15661 ttaatgcaga cggcagtgaa gtgtcgcaat gtggcaatgg ggcgagatgt tttgcccgtt
    15721 ttgttacgct caaaggctta accaacaaaa aagacattca cgttagcacc gcaaaaggca
    15781 aaatggtgct aagtttgcaa gaagacggca aagtgcgtgt gaatatgggc gaaccgattt
    15841 gggaaccttc gcaagtgcct tttacagcaa ataaatttga gaaaaactat attttacgca
    15901 ccgagctaca aaccgtgtta tgtggcgtgg tttcaatggg gaatccgcac tgcgtactgc
    15961 aagttgatga tgtgaaaacc gccccggtaa atgaactcgg gccgttacta gaaagccacg
    16021 agcgttttcc tgaacgggcg aatatcagct ttatgcaagt agtgaatcgc aatcacgtta
    16081 aattacgggt gtatgagcgt ggagcaggcg aaacccaagc ctgtggtagc ggtgcgtgcg
    16141 gcacagtggc ggtcggcatt atgcaaggct tgttagataa caaagtgcag gtggatttac
    16201 ccggtggaac gctgattatt gaatggcaag gagtagggca tcctctgtat atgaccggcg
    16261 atgccaccca catttatgat ggatttatta aactgtaagt tttcccatag ggaggcaagc
    16321 ggtttatttt taccgttttt ttgcaaaata gggttggttt atacaaaagt accagcgtgg
    16381 acgctggcac tatcagactg atgtataact tttgtttaaa ttcaacttat agatggtgca
    16441 agcgtcctcg cttgtaccaa aacaggtttc actcgagtaa cttcttcacc aactccaaca
    16501 ccacaggtaa ttcggtaaca ccttctctat ccaaaaaatg cccgccttga tttaaccgaa
    16561 tataatccgc gtgcaaatgt tgggctaacg catcactgta ttggtgattc acgaccttat
    16621 catctaacgc acttaccaca tagcttggaa agctcgatac gctcggcaaa atcgcataat
    16681 agttggtaaa ggcagacagt tcgggtaagt tttctaccgg ttgatagaac cccgacacaa
    16741 acaccgcccc tttaatcttg gcgtaatttt tggctaaaaa attcaaaatg gcaatgcaac
    16801 ctaaactatg cccgacaaaa accgtttgat cggtcagctc cacattttgt gcaagatgat
    16861 ttaaccaacc atctaatgac ggctttgccg aatccggcat attcaaccgc tcacaactga
    16921 caccacactt cgctaattct tgctccagcc aaggaaacca atgcttatcg gcattcgccg
    16981 tataaccgtg tacgatataa acctgtgcca tttcacacct cctgattcac caaagattgt
    17041 accatagctt aatcaggaaa aaacaagcgg tgattttttt aaattttttt gcaactcagg
    17101 taaaatagca cgcatttacg caaagaggtc atcaatgaac gtttggattt tacttgcgat
    17161 ttccatctgc ctcgaaatcg ctgccaccaa tttactcaaa ttaagcaacg gcttcaccaa
    17221 agctataccg actattggct cgctcgcctt atacggttta tccttttact ttctctctat
    17281 tattttccgc accctaccgg tcggaatcgt gtatgctatt tggtccggcg tagggattgt
    17341 ccttaccgcc cttgttgctt attttgcttt cggacagaaa attgacttgg caggcttaat
    17401 cggcatcagc ctcattattg ccggtgtatt ggtgattaat ttgttttcta aagtgtgata
    17461 caagcggttg attttacaaa aaaatctgca aaatcaaccg cttgtaatag ttggcaagaa
    17521 ttataacccc tttaaccgcc ggtaaagctc agtaaatttt tggcgttttt gttgatattc
    17581 tgcatagcgg gcaggggttg gttggtaaac ctgttccagg ggtaacggct gacagaacgt
    17641 agcaatatcc tgatttgggt ttagcgcaat ttgagcgagt tttgccgccc ctaatgccgg
    17701 accgacatca ccactggtgc ggtattcaaa ggttttaccg ctaatatcgg caagtagttg
    17761 tcgccagtac acactttttg ctccaccgcc aattaatgca atattgtcag caactacacc
    17821 agtttcgtgg agtacctcaa tcccttcagc caaagcgaaa cttacccctt caatcacggc
    17881 ttttgccatc gttatttggt tgtcattatg gcttaatccc caaaatacgc ctttcgcata
    17941 agggtcatta tgcggtgtac gttcacccga taaataaggt aagaaaatag catcagatgc
    18001 cgtttggctt gcttcaacct gttggaataa agtcgataca tcttttagtc ccaatgattt
    18061 tactgcccaa tctaccgcag aagcggcact taatattact gacatcagat gccaacgatc
    18121 aggtaaagcg tggcaaaaac tatgcactgc tttttgcgga ttagcctgaa atttatcgct
    18181 cactacaaaa taaacccctg aagtccccaa tgagagcata gcttgcccgg tttggtataa
    18241 gccaatgccg attgcaccgg cagcattatc gccaccgcct gccacaatcg gcacagattt
    18301 cattttccat tgctcggcaa gggttggacg taaataacct gtgatttgat tgccttcaaa
    18361 cagtttcggc atattttcaa tgtctaatcc gcaagcattt agtagcgatt tgttccaatt
    18421 ccgtttaccc acatcaagcc acattgtgcc ggaggcatca gacatatcag aggcatattc
    18481 gccgctcatc aacaagcgga gataatcttt cggtagcaag actttgctga ctttttcggc
    18541 aatatcgggc tggtgtttat caacccaacg caatttcgga gcggtaaagc ccggcatcat
    18601 caggttgcct gtaatttcac ggctatttgg cacaagctgt tctaactctt cgcattccat
    18661 aaaactacgt ccgtcattcc ataaaatcgc aggggaaagt acattatctg cgttatctag
    18721 taaagtcgct ccgtgcattt gcccggttaa accaatcgct tttactgctt gtaaatcttg
    18781 agtagcggaa agttctaaca tcgcttcatt ggtggcattc caccaatctt gcggattttg
    18841 ttcagaccac aatgggtgtg gacgaaaaat aggaagtgat ttttgtgtga tggcaataat
    18901 gtgttgattt tcatcgagta acacgacttt cacacccgat gtgccgagat cgattccaat
    18961 gtacataaat attcctttgt tattgaatac aagcggtcat tttattcgga acatttgcaa
    19021 ttttaagttt tggagatcta tcacccctct ttagcaaaga gggggatcag atcgagctta
    19081 actttgcaaa aaattgataa aaaacaaccg cttgtagatt aacggtaaat atagctattt
    19141 accaaatttt ccaaatattc ttgctgaccg gaaacaggtt ttggatctaa cccttgggtt
    19201 tccactattt ttgccaaatc ttcaaggctt gctttaccgt ttagaatttg taagcccaaa
    19261 tcttggttcc agccagcgta gcggttatct actactttct gtaatgcttg atcttccagc
    19321 atttttgccg cacgttttag cgaaagggct aacacatcaa ttgccccgat atgtgcgtgg
    19381 aataaatcat acggatcggt actttggcgg cggattttcg catcaaagtt gaaaccgccc
    19441 gttgtgaaac cacctgcttt taagatttca tacatcacaa gggtgttttc ttccacgctg
    19501 tttgggaatt ggtcggtatc ccaacctaat tgcggatcac ctcggttggc atcaatcgag
    19561 ccaaaaatat ctaatgcggt ggcagtcgca atttcgtgtt ggaaagtatg ccctgcaaga
    19621 gtggcgtggt ttgcttcaat gttgactttg atctcttttt ctagaccaaa ctgttttaag
    19681 aaaccgtaaa cggtggcaac atcgtagtca tattgatgtt tggttggttc ttgtggtttt
    19741 ggctcaatta ataaagtgcc gttaaaaccg attttgtgtt tatgttccac cactaactgc
    19801 ataaagcgac cgatttgttc acgctcacgt tttaagtcag tgttgagtag ggtttcataa
    19861 ccttcacgtc cgccccataa tacataattt tcgccgccta agcgtttggt tgcgttcatt
    19921 gcggtaaaga cttgtgctgc cgcccaagca aagacttccg gattcggatt ggttgaagca
    19981 cccgacatat agcgaggatt ggtaaagcag ttcgccgtac cccataataa tttcacgcct
    20041 gtttcagctt gtttttgctc taaaatatcc acaatagtgt tgaaattgtg ctgatattct
    20101 ttgaaattgt tgccttccgg tgcaacatcc acatcgtgga agcagtagta aggaatgcct
    20161 aatttttgga aaaattcaaa ggcaatttcc gctttttgct tcgcaccttg cagtaaatcc
    20221 cccgtttttt gccagcttct gtcaagcgaa cccacgccaa acatatcgtt acccgtccag
    20281 cagaaggtgt gccaatagca aaccgctaac cgcagatgtt ctgccatcgt tttgcctaaa
    20341 accacttcat ccgggttgta atgtttgaat gcaaacgggt tggtggaatt agccccttca
    20401 tattgtactt ttgagatttt gtcgaaatag ttagacataa taatgctcct atgaattgga
    20461 aaaataatct ttcggtaaca tcatcggaaa attatgcaaa accttcaatt acgatatttc
    20521 gtttttggat ttcgattatt ggttaatgtg gcgtagatca caaaagtgaa aaatcataat
    20581 gatattaata aatatgataa ttgaacttca tttgaaataa gcccagactg cttacgggcg
    20641 aaaaagatgc tcacattttc ataaccaatg aggtgaacta tgaaacttaa gtctaaatta
    20701 ttagccattg ctacggcgac tttaatggta ctcagcaatg cttctgttgc taaagatcta
    20761 aaaatcggta tgtcaattga tgatttacgc ttagagcgtt ggcaaaaaga ccgagatatt
    20821 tttgtgaata aagcggaaag cttaggagca aaagtcttcg ttcaatcggc aaatggcgat
    20881 gcaaccgcac aaatctcaca aattgagaat atgttgaata aagatattga tgtattggtg
    20941 attattccgt ttaacggcga agtgttatcc aatgtgattg ccgaggcgaa gaaagaaggt
    21001 gttaaggtac ttgcttacga ccgcttaatc aataatgccg atgtggattt ttatgtttca
    21061 tttgataatg aaaaagtagg tgaattgcag gctaaaagca ttattgggca aaagccggag
    21121 gggaattatt tcctaatggg tggttcacct gtagataata acgcgaagct gttccgtaaa
    21181 ggtcaaatga aggtgctaca accgttaatt gacagtggaa aaattaaagt ggtaggcgat
    21241 caatgggtag attcttggct tgctgaaaaa gcattacaga ttatggaaaa tgcactaact
    21301 gctaataaaa ataatattga tgcagttgta gcttcaaacg atgcaaccgc aggcggtgca
    21361 attcaagcgt taagtgccca agggttatcc agcaaggttg caatttccgg acaagatgca
    21421 gatttagccg caattaaacg tattattgcc ggtacgcaaa cgatgacagt gtataaacca
    21481 attaccaatt tagccgacaa agctgccgaa attgctgttg cattaggtaa agatgagaaa
    21541 gtagaaatga atgctcaatt aaataacggt atgaaagaag taccggcata tttattagag
    21601 ccggttgttg taactaaaga aaatattgat gacacagtaa ttaaagacgg cttccatacc
    21661 aaagatgcag tatataaata aatcacttta atttttctag atggcgaggc ttcctcgcca
    21721 tttttgaaaa taaggggcta actaagtatg gcgaaattat tagaaatgaa gaacatcact
    21781 aaaaaattcg gtgaggttgt ggcattaaat aatatttcaa tttcccttga aaccggcgaa
    21841 atactttctt tatgtggtga aaatggttca ggcaaatcaa ctctgatgaa agtattatgt
    21901 ggaatttatc ctgccggtga ttatgaaggg gaaatctatt tttccggcga aaaattgatt
    21961 gccagaaata tcaaagatac tgaagaaaaa ggcatttcga ttattcacca agaattgacc
    22021 ttagtaaaaa atatgtcgat tttggagaat atgtttttag ggaatgaaat taccaaatca
    22081 gggattacag atgacaatga aatgtatctg cgttgtaaaa ccttacttga acaagtgcag
    22141 ttggatattg acccaaacac caaagttgga gagctaggtt tagggcaaca acagttggtt
    22201 gaaattgcca aagcattgaa taaacaggta cggttgttga ttttagacga gcctaccgcc
    22261 tcgttaaccg aaaaagaaac cgagattctg ctgagtttaa ttaaagattt acaagctcac
    22321 aatattgctt gtgtttatat ttcacacaaa ttgaatgaag tgaaagccat ttccgacaaa
    22381 atctgtgtca ttcgagacgg cgaacatatc ggtactcgca gtgcagaggg aatgagtgaa
    22441 gacgatatta ttacgatgat ggttggacgt gagattacct cgctctaccc acacgagcca
    22501 cacaatattg gtgaagaagt ccttcgagtt gaaaatttaa ccgcttggca cccaaccaat
    22561 acacatatca aacgggttga taatgctaat tttgtactac gccaaggtga aattttaggt
    22621 attgctggtt tggtcggttc agggcgaacc gagatggcac aatgtatttt tggctcttac
    22681 caaggcaaat atcaaggtga tatttttctg cataagcaac cgattaaaat caaaaattgt
    22741 gcacaagcga ttgaaaacca tattgtgatg gtgccggaag atcgcaaaaa acacggcatc
    22801 attccaatta tgggggtggg taaaaacata actctctctt cattaccgca attttgtttt
    22861 ggcaaaaaag taataaatga accgctggaa gaaaccatta tcaaccaatc tattgcaaaa
    22921 ctgaaagtga aaacttcctc gcctgaatta gcaattggac ggttaagtgg cggtaatcag
    22981 caaaaagcaa ttttggcaaa atgcctattg cttaacccta aaatcctgat tttagatgag
    23041 ccgacccgtg gtatcgacgt gggagcaaaa tatgaaattt ataagctcat caaccaatta
    23101 gctaaagaag gtatggcaat tatcgtcatt tcctccgaat tacctgaagt tttaggcatt
    23161 agtgatcgtg tattggttat gcaccaaggc aaaattaaag cagatttgat taaccaagac
    23221 cttacccaag aaaaagtaat ggaagcggca ctcaaggagt aacctatgaa taagttaaaa
    23281 tcgattaatt tacaagttta tattatgctg attgcaattg ttgtgattat gagctttttc
    23341 tctattgcaa ctgacggtgc ttatttaagt gccagaaata tctccaacct gttacgccaa
    23401 acctccatta ccggtattct tgccatcggt atggtatttg tgattatttc cgcagaaatt
    23461 gatttatcgg ttggctcgct aatgggctta ctcggtggat ttgccgccat cagtaatgta
    23521 tggtggggct ggccgctctc gttaactatt atagttactt taattttagg cgtcatgctg
    23581 ggtgcttgga gcggttggtg ggttgcttat caaaaagtgc cgtcctttat tgtaactctt
    23641 gccggtatgc tggcgtttcg tggtgtattg gtcggcttaa ccaacgggac aaccgtttca
    23701 ccgattagca atgaaatgac aaccattggt caaggctatt tgcctgatat ggtgggtatg
    23761 attttaggta ctatcgggat attttgcttt attgtttggg gtagctacca acgcaaagcc
    23821 agacaaaaac tcaatcttac tgtgccttct atgtcgaaag acacgctgaa atacggacta
    23881 gttgcaatta tcgtattagg tgcgatctac ctactcaatg attaccgtgg tgtgccattc
    23941 ccggtattgg tgttggtgat tctagccatt gccggcacat tcttggccag aaaaaccgcc
    24001 ttcgggcgtc acatttatgc gattggtggc aacattgatg ccgctcgcct ctcggggatt
    24061 tcagttgaaa aagtcaaact tgcgattttt gccttaaacg gcttattagt tgccattgca
    24121 ggcttgattt taagctcacg tcttggagcc ggcgcacctt ccgccgggca aaatgccgaa
    24181 ttagatgcga ttgccgcctg cgtgattggt ggagccagtt tagccggcgg tatcggtagc
    24241 atttatggcg tagttattgg agcatttatt attgctttgc tggataacgg tatgagtatg
    24301 cttgatgtgc caaccttctg gcaatatatc gttaaaggtg gaattctact gcttgcagtt
    24361 tgggtagata ccatcagcaa gaaaaaagcc taattggata acaagcggtc aatctcgact
    24421 atccaacggg aaatccggca taatcgggct aaaaatggga actattgtgc gttttgccgt
    24481 ctttttagca tttgctacgg caaccagctc caccaagtgc ggtggcattt cgccttgttt
    24541 ggcaaggttg caaaggtagg ttatcgcttt aatccggctc attgagcctt ccagttccaa
    24601 cacatacgcc accagtgcca ttcgtgcatc agcaatttct cgctgtttgg tggtcaggtt
    24661 tcccacatcc acctccgcac gcactgccgg taactttttc ggcttggctt ccaccaccgc
    24721 cgacataaag cgggagcgga tttcggtttg gatttcttga gggaggtttg agagtgcaaa
    24781 ttctaaaatt tctcccccaa ctccaacctt tttatgagta gtccatcctt gtttctttgc
    24841 ctgatacaaa actccttgct ttgttttagg taaacaggct aaacttaact cagccaattc
    24901 ttttgccgaa tagtgtgttt ttagactgtt ttcactcata aaaacctctt taagctatct
    24961 gtcggcaaat tttttatggt ttcgttgagc ataacgttca ggccaaattt cttcgggtga
    25021 tataccgatt gcttcggcaa taatacgctc accctttaac cacggacgat ctacagcgtt
    25081 tttcaaggtg ctggattgac tgtagccatg cttcaatgag agttgtctaa gcgaccaacc
    25141 cgctttatgt aaagcagcga tgatgtcggc cctatgccag tctttcgctg tttttttaat
    25201 atcttccaat gtactcatta gataactcct ttcgc
//
LOCUS       DANLXB010000007        22750 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLXB010000007 DANLXB010000000
VERSION     DANLXB010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22750
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            22..1101
                     /gene="mltA"
                     /locus_tag="PXD41_000186"
     CDS             22..1101
                     /gene="mltA"
                     /locus_tag="PXD41_000186"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL6287754.1"
                     /translation="MAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKFGAKYNGRHF
                     MPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKISRWISSGGNI
                     NDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAMPSSKRFSRA
                     EIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQNGFKYASVG
                     RLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTGQVKGSAGVP
                     LVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGGAVKGHHFDL
                     YQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            1114..1563
                     /locus_tag="PXD41_000187"
     CDS             1114..1563
                     /locus_tag="PXD41_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287755.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(1597..3114)
                     /gene="purF"
                     /locus_tag="PXD41_000188"
     CDS             complement(1597..3114)
                     /gene="purF"
                     /locus_tag="PXD41_000188"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6287756.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(3129..3632)
                     /locus_tag="PXD41_000189"
     CDS             complement(3129..3632)
                     /locus_tag="PXD41_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL6287757.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(3778..4239)
                     /gene="rnhA"
                     /locus_tag="PXD41_000190"
     CDS             complement(3778..4239)
                     /gene="rnhA"
                     /locus_tag="PXD41_000190"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL6287758.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(4332..5663)
                     /gene="argG"
                     /locus_tag="PXD41_000191"
     CDS             complement(4332..5663)
                     /gene="argG"
                     /locus_tag="PXD41_000191"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL6287759.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            5847..6887
                     /locus_tag="PXD41_000192"
     CDS             5847..6887
                     /locus_tag="PXD41_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6287760.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(6952..7710)
                     /locus_tag="PXD41_000193"
     CDS             complement(6952..7710)
                     /locus_tag="PXD41_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL6287761.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            7837..8151
                     /gene="yhbY"
                     /locus_tag="PXD41_000194"
     CDS             7837..8151
                     /gene="yhbY"
                     /locus_tag="PXD41_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL6287762.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            8212..8934
                     /locus_tag="PXD41_000195"
     CDS             8212..8934
                     /locus_tag="PXD41_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL6287763.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            9003..9164
                     /locus_tag="PXD41_000196"
     CDS             9003..9164
                     /locus_tag="PXD41_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287764.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            9172..9534
                     /locus_tag="PXD41_000197"
     CDS             9172..9534
                     /locus_tag="PXD41_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287765.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            9547..10464
                     /gene="nagK"
                     /locus_tag="PXD41_000198"
     CDS             9547..10464
                     /gene="nagK"
                     /locus_tag="PXD41_000198"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL6287766.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(10535..12484)
                     /locus_tag="PXD41_000199"
     CDS             complement(10535..12484)
                     /locus_tag="PXD41_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL6287767.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(12517..13305)
                     /locus_tag="PXD41_000200"
     CDS             complement(12517..13305)
                     /locus_tag="PXD41_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL6287768.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            13430..13660
                     /gene="xseB"
                     /locus_tag="PXD41_000201"
     CDS             13430..13660
                     /gene="xseB"
                     /locus_tag="PXD41_000201"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL6287769.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            13666..14559
                     /gene="ispA"
                     /locus_tag="PXD41_000202"
     CDS             13666..14559
                     /gene="ispA"
                     /locus_tag="PXD41_000202"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL6287770.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(14594..15394)
                     /locus_tag="PXD41_000203"
     CDS             complement(14594..15394)
                     /locus_tag="PXD41_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL6287771.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(15519..16304)
                     /gene="znuB"
                     /locus_tag="PXD41_000204"
     CDS             complement(15519..16304)
                     /gene="znuB"
                     /locus_tag="PXD41_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL6287772.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(16391..17728)
                     /locus_tag="PXD41_000205"
     CDS             complement(16391..17728)
                     /locus_tag="PXD41_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL6287773.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(17738..18226)
                     /gene="mreD"
                     /locus_tag="PXD41_000206"
     CDS             complement(17738..18226)
                     /gene="mreD"
                     /locus_tag="PXD41_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL6287774.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(18226..19281)
                     /gene="mreC"
                     /locus_tag="PXD41_000207"
     CDS             complement(18226..19281)
                     /gene="mreC"
                     /locus_tag="PXD41_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL6287775.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(19383..20435)
                     /locus_tag="PXD41_000208"
     CDS             complement(19383..20435)
                     /locus_tag="PXD41_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL6287776.1"
                     /translation="MFKKFLGLFSNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQD
                     RMGSLKSIAAVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMG
                     SMVIDIGGGTTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERI
                     KQEIASAKIESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSV
                     LEQCPPELAADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKA
                     LEMIDMHGGDVFSIDD"
     gene            complement(20550..21179)
                     /locus_tag="PXD41_000209"
     CDS             complement(20550..21179)
                     /locus_tag="PXD41_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL6287777.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            21283..21930
                     /gene="udk"
                     /locus_tag="PXD41_000210"
     CDS             21283..21930
                     /gene="udk"
                     /locus_tag="PXD41_000210"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL6287778.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            21945..22526
                     /gene="dcd"
                     /locus_tag="PXD41_000211"
     CDS             21945..22526
                     /gene="dcd"
                     /locus_tag="PXD41_000211"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL6287779.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            22604..>22750
                     /locus_tag="PXD41_000212"
     CDS             22604..>22750
                     /locus_tag="PXD41_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL6287780.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILTVI
                     SFFFK"
BASE COUNT         7057 a         4885 c         4250 g         6558 t
ORIGIN      
        1 tggaaagcat ataaaaaagc tattgcggca gctagcgtgg tagcgattgc aacggtatta
       61 gtggcgtgtt cgtcttcagg ccaaaaaggc aaaacaacct cttatgatgc ggaaaaagct
      121 aaatttggag caaaatataa tggtcgtcac tttatgcctt atggcacaca ttttcaagct
      181 ggacgtttag gattaaatgc tgctcctgtt aatcaactag actttttaca gcagctttct
      241 aatgtcagag cctatagtag cttggcagat tcttatgcta tcgcttacgg aaaaatcagt
      301 cgttggatct catcgggcgg taatattaat gatttagcaa aatatggtat tagtactcgt
      361 ttaatgcgtg gcgaagatgg ctaccagaat gtgttaatga cagggtatta ctcgccggtt
      421 atcaaagccc gtagaacgcc tcaggggcaa taccaacacc cgatttatgc gatgccgtct
      481 agcaaacgtt tttcacgggc ggaaatttac gcaggagcat tgcaaggtca gggcttagaa
      541 ctggcttata gtaattcaat gctcgataac ttcttattag gtgttcaagg tagcggttac
      601 gttgactttg gtgatggtcg cttaaactat tttgcttatg cagggcaaaa tggctttaaa
      661 tatgccagcg ttgggcgttt attagtagaa gatggcgaaa ttccgaaaga gaaaatgtca
      721 gtgcaggcta tccgtgaatg ggggcaacgt aaccctagcc gtgttcaagg tttgttggag
      781 cgtaatccat cgtatgtttt ctttaaaaac gatcctaccg gtcaggtaaa aggctctgcc
      841 ggtgtgccgt tagtaccact tgcatctgtt gcatcagatc gtagcattgt gccatcaggt
      901 agcgtgttgt tggtcgaaat gccgttgatt gatagcaaag gaaattggac cggcaaacac
      961 gaaatgcgtt taatggtggc tcttgatgtt ggcggtgcag tgaaaggcca tcacttcgat
     1021 ttatatcaag ggattggcga taaagcaggc catatcgcag gtttaatgaa acattacggc
     1081 cgtgtttggg tattaaatta atacagggta actatgttaa aaaaactatc tgccatattc
     1141 ttacttctac cgagcgccgt gcttgcaaat aatttgcaaa atataaccgc ttcaactgag
     1201 cctaaatata aaatctcaga aatagatgtc agaattttga tacgccagct caataatatt
     1261 gagcaatgta tctatcctga gttagctaaa cccggttacc agcaaatcta cgcaaattgg
     1321 aatctggctg aaaatttaac gatgcaatat tttgaatatc agcttctaaa agagttgctc
     1381 ggagaggaaa atcagaaact gatgcaaaat gatacgcttt ctaccgagta tttccattta
     1441 ctgcattctc gtttaaatca ccaaaaagca aatgtagatc ccgaaaaatg cgatacattt
     1501 aaacctagat ataaagagat ttataaaagt atggaaaatg cactcactaa gaaaaatcaa
     1561 tagtaaaaaa ctcgcagttt tcactgcgag tttcttttat ctttcgttat gaatttctaa
     1621 attggtggct tgttttgccg cctctgcttt tgctttatcg tttcgagatc ttgctatact
     1681 gtctaaatag catttatcta catcacctgt aatatattct cctgtaaata cagagtcatc
     1741 aaagcgatga atagtcggat tttccagttg aatagactta taaagtgctt caaggtcttg
     1801 gaaaatcaat ttatccaccc ctatcatctg tgcaacctct tccactgagc gatcataagc
     1861 cactaattct tcacaagtcg gcatatcaat gccatacaca ttcgggtagc gaatttccgg
     1921 tgcggcagag gcaaaataaa cccgttttgc accagctgct cgtgccattt ccacgatttg
     1981 ttcagacgtt gtacctcgta caatagaatc atcaaccagt aacacgcttt tgcctttaaa
     2041 ttcagaggca atcgcattta atttacggcg aaccgagctt ttacgctgtg cttgccccgg
     2101 cataataaaa gttcgagcta catagcggtt tttaacaaac ccttgacgat agggtttata
     2161 caacatatta gcaatacgta ccgcaatatc atttgaggtt tcaggaatcg ggatcaccac
     2221 atcaatatca tcgataattc gtccccattc acgtttaatt ttctcaccta ataattcgcc
     2281 catatgcact cgtgcagaat atacagaaac gccatcaatg acggaatcag gacgggcaaa
     2341 ataaacatat tcaaaaatac aaggattcag ttttggatta tcggcacaaa tttgcgaatg
     2401 taattgccca tcaaaggtaa cataaatcgc ttcacccggc agcacatctc gcacaaattc
     2461 aaaccccact acatcaagag ccacactttc cgaagcaaac atatattcgg ttttaccctc
     2521 gatttcacgt ttacccagca ctaacgggcg aataccgaat gggtcacgga aagcaaccat
     2581 accgtgtccg ataatcatcg caatgcaagc ataagcacca cgaatgctat cattggtttt
     2641 acgaaccgtt tcaaagatat tgtctgggct taaatgctga gtggaataga gatctaaaaa
     2701 gtaagcaaaa atattaagaa gggattcaga atcagaatta gtgttcacat ggcggcgggc
     2761 ttcgttgtat aagcgagctt taagttccgc attattagtt aaattaccgt tgtgaactaa
     2821 ggtaataccg aaaggtgaat tgacataaaa tggctgggct tcagacacac ttgagctacc
     2881 tgctgttggg tagcgaacgt gaccaattcc aacattgcct tgtaatctca ccatatgctc
     2941 ttgctggaaa acatcgctga ctaagccgtt agctttgcgt aagcggaaac gattttcatc
     3001 gtctatggtg acgatacctg cggcatcttg tcctcggtgt tgaagtaatg ttaaaccatc
     3061 ataaatcgcc tgattcaccg gcgaattccc aataataccg acaatgccgc acatatagaa
     3121 aaacctcttt atttagtcgt gtttaaaaaa ctggaatttg cttgtaactg ttcaaagaac
     3181 cacttcacaa taaagtcaaa atgcggaatt aatagcgatg atttccataa ttccgtttgg
     3241 cttgcttggg taaaggtatc taagaaaaat aaaatagccg acacaattaa aataccacgc
     3301 aatgccccaa aagcaccgcc taaaatacgg tcggtgatag acattccgct caaatcaatc
     3361 actttgccta ataaaccgtt gatcacacca caaacaatta aagtcaaaat gaacagaatc
     3421 gccgctgcaa taccattgcg taaaaattct gaattttgca aataaaccga attaatttgt
     3481 gtgagataac cgcttaaata aggataaaac gagcttgcca caaaaaaggc gattacccaa
     3541 ccaagtagcg ataatgcttc attggtaaaa cctcgccata aactgataag cactgaaaaa
     3601 gcaatgattc cgataacaat taaatcaacc ataacacacc ttaaagcgta aagctctcct
     3661 attctacaaa aaaagaaaac gtttgcgtag cactatttcg ctaaaaataa gtgctttatg
     3721 caaatacaag cggttaaatt cggtaaaaaa tttacacaat ccgaccgctt gtaaaaccta
     3781 gtctgcaata taaccaacat cgtccaacgt tggattattt gctccttgtt tagccagctc
     3841 atcgcaaatc tcattttcac gatgtcctga atgccctttc acccaactcc attcaatttg
     3901 gtggcgttga atttcttggt ctaaagcaac ccataaatct ttatttttaa ctggcttttt
     3961 atcgctggtt ttccagtcat ttttcttcca gttaaaaatc catttttgga tcccgttttt
     4021 catatattgg ctgtcactat tgagttgcac cttacaaggc tcttttagca ttgctaaagc
     4081 ctcaatcacc gcccgcaatt ccattcggtt attggtggtt tgaaaatagc ctttgctcac
     4141 ggttttttcg tacccgttat aacgcagcaa aataccaatc ccccctttgc cggggttgcc
     4201 taaacaagaa ccgtctgtaa aaatttcaac taatttcatc atcacgcttt gaaaataaaa
     4261 gccccaaagc attaactttg gggcagcttt taggctaaat tctaaaagtt atcagaatgg
     4321 agatcaactg attatttttt tccaagttgt ggaatcacgc tattattagc cgccaataaa
     4381 cctgcatcgg tataaactgc taatttacca cgggtatcga caatatctaa gttacgcatt
     4441 gttaattgac cgatacgatc tgccggcgta aacggtgcat cttctacttt ttccatactt
     4501 aaacgttctg cttcgtaggt taagtttggc gattcagtgt taagaatagt gaaatcgtta
     4561 ccacggcgta actcaagcgt gaccgtaccg gtaatcgctt ttgccaccca acgttgagcc
     4621 gtttcacgca acattaaagc ttgcgggtca aaccagcggc cttgatacaa taaacgccct
     4681 aaacgtaatc cgttaatgcg atattgctca atcgtatctt cgttgtgaat accggtaact
     4741 aaacgctcgt aagcgatgtg taataatgcc attcccggtg cttcataaat accacgagat
     4801 ttcgcttcga taatacggtt ttcgatttgg tctgacattc ccaaaccatg tctgccacca
     4861 atgcggttag cctccataat taattcaacg gcatcatcaa tacgtttacc gtttaacgcc
     4921 accggcacac cttcttcaaa ggtaacagaa acagtttccg ctttaatttc aactgattcg
     4981 tcccagaatg ccacgcccat aatcggtttt acgatcttca taccggtgct taattcttct
     5041 aaatctttcg cttcgtgggt tgcacctaac atattcgagt ctgtagagta ggctttttcc
     5101 accgacattt tatagtcaaa accgttttcg attaagaatt tagacatttc caagcgaccg
     5161 cctaattcat caatgaatag ttggtctaac cacggcttat aaatttttaa ttttggattg
     5221 gttaataaac cgtaacgata gaaacgctca atatcgttac ctttaaaggt tgaaccatcg
     5281 ccccagatat tcacatcatc ttctttcatt gccgcaacca acattgtgcc ggttaccgca
     5341 cgaccaagtg gcgtggtgtt gaaatacgga ataccgccgg ttgaaatatg gaaagcaccg
     5401 cattgaattg cggcaatgcc ttcgtgagct aactgttggc gacagtcgat taatcgtgca
     5461 ttttcagccc catattccat cgcttttttc ggaattgcgt tgtaatcatc ttcatccggc
     5521 tgacctaaat ttgcggtgta cgcataaggc actgcccctt ttttacgcat ccataacagt
     5581 gctgctgagg tatctaaacc gcctgaaaag gcgataccca ctttctgccc taaaggtaaa
     5641 gcttctaaaa ttgttgctga catacgaatt cctataaatt ttgaaagtaa aaatattcaa
     5701 acgcaaacgc ttacgttcaa gcaaaatatt ctagctgaaa agtagtaaaa attcatctaa
     5761 aatttagccc gatgatttgc aaattttttg tgaaatttga ccgcttataa tttactgaaa
     5821 acctaaaagc aatagagaaa atcagaatga aaaaactact cgtaatccgt aatgataaaa
     5881 ttggggactt tatggtctgc tttccggcat ttgctatgtt gaagcaatca atgccgaatg
     5941 tggaaattac cgctcttgtg ccaagttata ctgctccact tgccgagctt tgcccttcta
     6001 ttgataagat tattattgat acggcgaata aaaaagataa aaatgaattt aaccgtattt
     6061 tacaagcggt taaaaatgag caatttgatg cggttatttg ttttgtttca gactggcata
     6121 atgccaaact cacctggcaa agtgggatta aataccgcct cgctccagca actaaattat
     6181 tccaattttt atataaccac cgtttaaccc aacgccgttc tcaatcagca aaagcggaat
     6241 ccgaatataa tttggattta gcccgtgctt ttttaagcaa acacaatata ccgattgttg
     6301 aacctcacac gccatactta agtgttgaac agcaaaccgt ccaggcacaa aaagcaaaat
     6361 tatgcgaaca actcaatatt accaccgtta aaaagtgggt atttgtgcat agttcaaccg
     6421 gtggttcggc aaataattta tctatagaac agtatgcaga gttaattcaa ggtattttgg
     6481 cagaatttga ttgctatgtg gtactcaccg cagggaaagg cgaaagcgaa aaagctcagc
     6541 agttagctca acaaatcaat cacaacaacg tggtggttta tgataaaaat gaggggttac
     6601 aagattttac acattcgctt gcgtgtgcag atttgtttat tgccggctca accggtccgt
     6661 tacatattag tggggcgtta aatattccaa ctattggctt ctacccgagc cgactttctg
     6721 ccattccacg ccgttggaaa ccgattaatg atgcgaataa acacattgca ttttgcccac
     6781 cgtctgataa agcctcacaa atgaatttaa ctttaatttc tatttctgag gcattaaaaa
     6841 cgatagtacc gtttattcgg agaatgtgga atactccctc tctctgataa aattgctaaa
     6901 cgcaatttta tctatctctc tcccactaga gggagagagt actgaaaagc atcatttccg
     6961 agtacgattc cacaaatccg catattttac gaaagtagaa tgtgccgaaa gaactgccaa
     7021 taaaaatcct tgcttgccat ctaaaaaacc ggcttttaat agatacattt tcacaaaaca
     7081 gccgatggcg tgagtcacgc catcaaataa gctggctgtt ttgcctgcat ttgcccgttg
     7141 gattgcccac gctttagcgt aacttgccga ttttaccaaa tagtggtgaa tatctttata
     7201 ggtgaaatgc agcaaatcgc cttgtagttt ctggattttt gcctcttttg ggtaatgtac
     7261 tttttcgtga accaattcat caccatattt ggcaaattcc gtgcgataca atctcaccac
     7321 acaatccgga taccaacccg agtggcgaat ttgtttgcca aatacttcac ttaagcggct
     7381 gattttgtaa acggtatttt tttcatcatt tttgaccgct tgtaaaatag attgcttcag
     7441 ttcggctgtc actcgctcat ctgcatcaag ccaaagtaca taatcactgg tcacatattg
     7501 ttgagctaac tgacgctgtt taccaaagcc ttgccaatcg gtgttagtgt agaaccttgc
     7561 gttgtattca gcagcaattt gtggtgtttc atcagtactg ccactatcta aaatcacaat
     7621 ttcatctacc caatctttta ctgtgtcaag gcaagcccgt aaatcttgag cttcattttt
     7681 gacaatcatc gcaacactta atgtcggcat agtttatcct tctctctttt tgtcgtgtgt
     7741 ttttctgcta ttcgttgcat tttactttaa aaatagtggt ttttgtgcta ttttctacgc
     7801 caaattttat caacaaaaca aattaacgga aaaagaatgt caattacatt aacaaccaaa
     7861 caaaaacaat tcctaaaagg cttggctcat catttaagcc cagtggtgat gctggggggt
     7921 aacggcttaa cagaaggcgt gttagctgaa atcgataacg ccttagacca ccacgaactg
     7981 attaaagtta aagttgccgg ggctgatcgt gaaaccaaac aattaattat tgatgccatt
     8041 ctgcgtgaaa ctaaagcggc tgaagtacaa accattgggc acattttagt gctttaccgc
     8101 caaagcgaag agaaaaaaat cagcttgcca aaagcaacta aagcgatcta attgcaaaaa
     8161 tatgtttaaa ttcaaccgct tgtattcaag cggtttttta taggactttc tatgtttaaa
     8221 aaattctctc tttataccct tgcaatgttg ctcattcctg tggtgacttg gctggcaaat
     8281 tggcactggt ctctggcaat tcaatacgct gaatttgatt tcgactactt tttatattta
     8341 atcaccgaaa ccggctccgt accttatgcc atcatcacct gtgtggtttt cgccttatta
     8401 ctggcgaggg tggttcgcaa acgctactct ttaatttttg tgattaccgt gtgtgtcgct
     8461 tcaatggtag ccactcaagc aatcaaaaca gcgatgaaat caacctttca agagcctcgt
     8521 ccatttgtca ctgctctttt ccaagataaa acagacgatt tttatcaatt aacacgcgag
     8581 caacgtgggc ttgccgtaat ggaaaaaatc ggtgcaaatc aaaattttgt taccgctcac
     8641 caagccaaag aagtgggcta ttctttccca tcaggccaca ctatttttgc ggtttcttgg
     8701 ctattattgg tggtaggttt ctgccgtaat atgcgaggac aagcggtcgt tttggctcat
     8761 ttttttgcaa tcagttgggc ggcgttaatg ctgattagcc gcttgcgttt aggtatgcac
     8821 tacccgattg atttattcac cagtagttta attgcgtttc taatcaattt agccttattt
     8881 gtgtggtttg tgccttggtt ggaaagtaaa aaatggtttg ctaaaaagcc ttaattggca
     8941 atttagccaa atcaatatac aatacaaatt attgaataag tacctaaaat aaggagctta
     9001 gaatggaaat gtcgatagaa aaaatagctg aactattaag cgataaagaa aaagatgact
     9061 atccgtttag tattgaggaa agacaatttg ccgcccaggc tagtgctgat acttgggagg
     9121 caatcttaaa taacactatt caaccttttg acttcaaaaa ataggcttgc tatgtatcaa
     9181 gtttttattg cagaaccaaa agacccaaac ttagagaaag gcttattgaa acacttcatt
     9241 aagtcttatc ttactcaaga agaactcgat ttcctgcata aaattctcac taatttaccc
     9301 aacatcagac ctttttgggg cgataccggt tacaaatata tcgtcattga taatgtttac
     9361 ttcttgtatg aagtttccga aagtgaaacg aaagtcattc tacttggcac caaatttaat
     9421 aataaacgga aaacttttaa ttttgcgaat acgaaaaccc agcaaaaatc aatgaagaaa
     9481 tggattaatg atttagcaat ttataaaccg cataaaatca atcaatcgca ataagagagc
     9541 gtaattatgg caatttatta tggcttagat gtgggcggca caaaaattga attagccgct
     9601 tttaatgaaa aactagaaaa actacacagc gaacgtgtgc cgacaccgca gacaaattat
     9661 caagattggc tgacggcaat taaaacgctg gttgagactg ccgatacaaa atttgacgaa
     9721 aaaggcactg tcgggctggg cattccgggc tttgtaaacc gtgaaaccgg cattgcggaa
     9781 attaccaata ttcgagtggc tgacggcaaa acgattctga aagatttagc cgaatgttta
     9841 gggcgtgaag tgcgtgccga aaacgatgct aactgctttg ccctgtctga agcgtgggac
     9901 gaaagtaata agccttattc caccgtatta gggttgatta tcggcaccgg ttttggcggt
     9961 ggttttgtgt ttgacggtaa aattcattca ggcagaatcg gaatggcagg cgaagttggg
    10021 catatgcaac ttaactacca cgcacttaaa ttgctcgact gggataaagc cccaatttat
    10081 gaatgtggtt gtggcaacca agcctgttta gacacctata tttcagggcg gggttttgag
    10141 ttactgttta atgatttagt aggagaaaaa atctcggcga aagcgattat cgaacgcttc
    10201 taccaacaag aaaccaaagt ggtggcattt gtcgaaaaat atattgagct aatggcaatc
    10261 agtatcagca atctgattac gattttagat ccggatatga ttgtattcgg tggcggttta
    10321 tccaactttg attatatcta ccaagctcta ccaaaagcat taccaaaaca cttaatgcgt
    10381 tcagcgaaag tgccggtcat caaaaaagca attcacggcg actcaggtgg cactcgtggt
    10441 gcagcagcat tattcttaaa gtaatgaaca aatttgagag agggcaagcg gtcattttta
    10501 ataaaaatat tgcagccctc tcttttaatt tgccttactg cttagtttct tccggtaatt
    10561 tatataactg atttttatat aaataactgc caagcaatgc gtgtgctaac gcctcttttt
    10621 taaacgattc cggctgttct ttaggggtga gtttatagtt agctttatcg tagctaaatc
    10681 cttctatcgg taaatttggt cgcattacca ccacatcatt tccccgcatc atcgcctgtg
    10741 tcgcatcata ttgcataaag gcacggtttg ggtcaatgtc ttgcgttaaa tcatacccta
    10801 tcatcggata ttgaccactt attcccgcca cagaaagtaa tgttgtcggc atatcgagct
    10861 gactcactaa acggttatcc gttcttggct gaatgtgttc gcctaataaa agtgccggaa
    10921 tatggaagtg ttgaattggc actaaatgct cgccaacggc tcttgaatcg tgatctgcaa
    10981 tcactaaaaa caccgtatct tgccagtact ctgatttttt cgctaactca aagaaatgcc
    11041 cgatagcata atcggcatat tttgccgcat tatggcgagt ctgcttcggt tgttcataga
    11101 gttcaatttt gccgtccgga aattcaaacg gatcgtggtt actggaactg aataccaaac
    11161 taaaaaacgg tttacctgat ttgtgcagtt gattaaaagt ttcatttgcc ttatcaaaca
    11221 gatcttcatc actcacgccc caagttgcgg taaatttagg gtttttataa tctttttcat
    11281 cgataatttg ctggaaacca ttaccgtaga aaaagctcgc catattatca aaatgcttct
    11341 ccccaccata aataaaggaa gtatggtatc cttgacgttt taataattcg gcaatactaa
    11401 aaaagttagt ttggcttttc gtcagtttta ccacagatct tgccggtgtt ggtgtaaaac
    11461 cagccgttac cgcttcaatt cctctcaccg aacgagtacc tgttgcataa agattggtaa
    11521 aataccagcc ttgttctgaa agtttatcta aatttggagt gagatttttc cctcctagcg
    11581 aaccgacaaa ttgagcccct aaactttctt ctaagataat cacaatgttt ttaggctttc
    11641 cttgataagt cgctttattt tgcgtgaggg tgggaatttc atctgaaata taatctgaag
    11701 ctggtcgatt acgaacctgc ttaacaatgt tgaacatttc ctccacagac atttttccat
    11761 actgttcgga agatttatct tcatctttca attgctgaac cgcataaagc acggaataac
    11821 ctgaatttag caccagtgaa ttgacaagcg gatcgcttga aaatgccacc attgccggat
    11881 taatccctcg atgggcaaaa ctggaacgcc caccaacaaa aactattgca gcaaccaata
    11941 aagccagtag cggacgcatt ttccagctcg ggaaatgcaa atttttggtt gcccaacccg
    12001 ataatttcca ataaatgatg agagaaatca tcgcaatgcc aatcccacaa ataacagccc
    12061 ataaatgtcc gttaatcagc attgtgaaca cttctctcgg atggaccaaa tactcaatga
    12121 aaagacgatt tgggcgaagg tcaaaggttt caataaaatt cggtgtggcg acttccataa
    12181 aaagaataaa tacactaccg acagttagcc aaattcttaa aacagtctgc caaatcgaac
    12241 ccagtacatt tttatgaaaa cacaacacgc taaataatgc cggtaagcca aatagccaac
    12301 atagcgaaga tatatcaatg cgaatacctt gtagtattaa tggtatccat ccatcaacag
    12361 cggatactcg atcagattgc caaacgccta acactaaacg ggataaggtg aggataacta
    12421 aattaatccc aacaaatagt aggattggaa atagcacagt tcttgattga ctgcgttggt
    12481 acattttgaa tctcctttta aaaaaatatc ggcatattat aattgaataa tgacaggatc
    12541 gcctactttt atcacaccac tgttttgtgg cacaaggtga ataccgaaca ccggcttacc
    12601 tttttcatcg caatgctttt cttttaaggt tctaaacggc tccgatttgg ggtctaactc
    12661 aagcgtgttt aaatcccgtg taatcaaaat gcaacgagta cataatgccg ctttggtaaa
    12721 tagcacttcg ccaatttgaa cttgttgcca ctgctcttct tcaaatgcca cattgccatc
    12781 aatcacaata ttcgggcgaa aacgagccat ttcgagtgga atcggcgacc attgttgcac
    12841 ttgctcaagc gattttagag acatcaaact caccgggttg ctatctgcaa aactcattgg
    12901 gtgatcggca aaattcgcaa caattcgttg gctttgcgag ccaagccaac gtagttgcac
    12961 agccctacca aaaatttcac tcagccattg attgaccgct tctgccgcca ctttggcatt
    13021 aaaatgtgtt ccccacactt cactactctg ctcttccaca aaatcttggt aaagtgcaac
    13081 gcatttttga ccgcttgtat gggtaatcat tacccctgtc gcaatcggga aagccgctag
    13141 acggtataat tccggatctt tacgggcagt aataaatttg ccgttaggct cggctagcat
    13201 aaattcacgg tcaaaattta agcctttcgg ttcaacaaat gcctgtgaaa cttgaatagc
    13261 ttgagttgat tttatcgggt aaatattgag ctcggtaact tgcatagaaa atcctccatt
    13321 tggaaatagg ataacaatac ctgcaagcgg tcgaaaagta aaaggaattt gcaaatccct
    13381 tgtgagaacg gtaaacttga gcaactttta cagcaatagg tcagcaacaa tggcaaagaa
    13441 acccactcaa gattttgaaa gcacacttaa agaattagaa gcaatcgtta cccatttgga
    13501 atccggtgat ttaccgcttg aagaagccct caacgaattt gaaactgcaa tcaaattagt
    13561 gcaacaaggg caagaacggt tacaaaaagc cgagcaacgt attcaaatct tattaaataa
    13621 aaacgatact gccccactta gcgattacga aagagaataa tcacaatgag ctatctatta
    13681 gcaaccgatc tgactcacct gcaacaacgg attaaccatt ttctcgctga aaaattaaaa
    13741 acaacggata gcgttggttc gcctttagta gaagcaatgg cttatgcggt attgctaggc
    13801 ggtaaacggg tgcgaccgtt tttaatctat gccaccggca gaatgcttgg tgtgccgttg
    13861 gaaaaattag atcatagtgc ggcggcaatg gaggctattc acgcttactc gctggttcac
    13921 gatgatttac cggcaatgga cgatgataga ttacgccgtg gcaagccaac ctgccatatt
    13981 gcctttgatg aagctaccgc tattttagcc ggtgatgcgt tacaaagttt tgcgtttgaa
    14041 ctgctggcaa ccgatccgca tttgaccgac cgagaaaaag ttgttcaagt tacagaattg
    14101 gcaaccgctt ccggtgcaaa aggaatgtgc ttagggcaaa gtttggattt gattgcggaa
    14161 aataaagcgg tgagcttgga agagcttgaa ttaattcatc gcaacaaaac cggggcattg
    14221 attctatcat ccgtgatgat gggattaaac ctttccgaat attcgcaaaa tgtagccata
    14281 aaacaaccgc ttgtaaacta tgccaaagcg attggcttag cctttcaggt gcaagatgat
    14341 attttagatg tcattggcga aacagataaa atcggcaaaa tagtgggttc agatgaacac
    14401 ttaaataaaa gcacataccc gaaattgttg ggcttagacg gggcaaaaca aaaagccgaa
    14461 atgctttatc aaaccgctct ccattcgctg gaacagttgc ctttcgatac caccgcatta
    14521 aaagagttag ctaattttat tgttaagcgt gaaaactaag aaaaaaccta gccgaagcta
    14581 ggttttttag tgattaaacg tgaggctgag cttccggcaa tgtgccttca atttcatata
    14641 ccacatcgcc gtctttaaag aaaacatagc caccgttttt cattttggtc cagttttcat
    14701 ttttggtaag tggctgagtg gcaataatcg tcactttatc ggtaattttg gtatattgac
    14761 taaaatcaat cgacacatca tcatcacgca aggctttgcc aaacggtgct ttacggcaaa
    14821 cgtaatgcag attagttgta caacgggcaa tcatccaatg accgttggat aaaacaaaat
    14881 taaatacccc gtgttccgca attcttgagg tgatttgcac cacggcatca aaaatctctt
    14941 tttcgcttgg tttagccgga tacatctctt ttaattccga cacaatacgg caaaatgccg
    15001 cttcggaatc ggttgtacca atcggctggt agtggcactc ctcgcatacc ccaacacctt
    15061 ccactgtgcc gttatgggca aacacccagt tctcgcccca taattcacga atgaaggggt
    15121 gggtattttc caaattcaca tcaccacgcg tagctttacg aatatgtgca ataacattga
    15181 gcgatttaat ttgatattgg ctgattgctt ctgccatcgg cgatgatgct cccgggcggt
    15241 tatcacgaaa aacccgaacc cctttgcctt caaaaaaggc aattccaaac ccatcagtat
    15301 ggtgatccgt cagcccaccc cgacggcgaa atccatcaaa agaaaaagta atatcggttg
    15361 gcgtattaca attcattcca agtaattgac acataatttg cttcttaaaa ccaaataatt
    15421 tacaacaaaa aataattgtt acatttaaac agattgatta gaaaattcaa tgctctttac
    15481 ataaaaatct tatgctttat tttcatacat tatgctgttt aatggtattc ttttttgaat
    15541 agcgataata gaaaaatcaa gccggcacaa atgactaccg aaggccctgc tggtgtatct
    15601 ttccaactgg ataacaataa accgccactg actgcaataa tactgaagaa aatcgcaatc
    15661 aacaccattt tttcaggcgt tttagcaaag cgtcttgccg tagcagacgg aataatcagc
    15721 agtgaggtaa taattaaagc accgacaaat ttcatactta atgcgatagt taatgcggtt
    15781 aaaatcatca gcaataaacg taagcgagcc acatttaatc cttcaatttg agcaagttcc
    15841 gggctgatgg taatcgacaa caaccgcttc caaaacagca ttaaaatcaa acaaattagg
    15901 gttgctccga ttccgataaa caccacatca gaaaaattaa ttgccagtaa atcgccgaat
    15961 aagtaagaca tcaaatccac tcgtacatta tccaacaaac taatggtaat taccccgaga
    16021 gaaaggctag tatgggcgat aatccccaac acggtatcca ccgaataatt ggttttttgc
    16081 tccaaccaaa ccagcaataa tgcaagaaga atagtcattc caattacagc aagatacgga
    16141 tcgagttcta aaaaaatccc taatgccacg ccgagcaatg cagagtgcga aagtgtgtcg
    16201 ccgaaatacg ccatttttcg ccacaccaca aaagccccta gaggtgcggt aataaaggct
    16261 aacaaaacac cggcaagcca agccggaaat aaaatatcaa acatattggt tctcaaaggc
    16321 aagtaaaaca agcggttatt ttttcggaaa aatttgcaaa ttttttgctg atttagaccg
    16381 cttgtcatat ttatttataa cgttgaatcg ggctggcttg atcctgtgct ttcagccacg
    16441 ccattttttc tttaatctgt ttttccattc cccgctcact tgggaagtag aattcggtat
    16501 ctttcagctc aggcgggaaa taattctccc cggcggcata agcgtttggc tcattgtggg
    16561 catagcgata ctcttcgcca tagcctaaag atttcattaa ttgagtggga gcattacgca
    16621 aatgcgccgg cacatcgtag tcttttgcct ctttagcgag gcgctttgct tcattaaaag
    16681 cttgatagac cgcattgctc tttggggcaa ctgccaaata aatgatcgct tgggcaatcg
    16741 ctctttcacc ttcataagcc cccactcggg taaagcaatc ccaagccaca atcgcaattt
    16801 gcattgctcg agggtcggca ttaccaatat cttcagaagc aatcgcaagc agccttcttg
    16861 ccacataaag cggatcacca ccggcggtta aaattcgggc ataccagtat aatgctccat
    16921 cagccgatga gcctcgaatg gatttatgta acgcagaaat gagatcatag taacgatcac
    16981 cgcctttatc aaaacgagct tgtcgttcgc ctaacacttc ggtcagcaaa cttttattca
    17041 gcactttccc tttagctgaa tcttgtgcca tatctaccat taattccaaa cagttcaagg
    17101 caaaacgggc atcaccatta acataatcag caagcaatgc cagtacatca tcttcaagta
    17161 ccaaagtttc attgcctaaa ccacgttcgg tatcggctat cgccatttgc aaaattttta
    17221 gaatttcgac cgcttgtaac ggctttaaaa tataaattct ggctcgggaa agcagtgcgt
    17281 tatttagctc aaaagaggga ttttcggtag tcgcaccaat aaaaataata gtgccgtcct
    17341 caatatgcgg taaaaacgca tcttgctggc ttttgttaaa gcggtgaact tcatccacaa
    17401 aaagcaacgt tcgtctgccg gcttggcggt ttaatttggc ttgttcaatc acctctcgga
    17461 tctcttttac accgctggtc acagcggaaa tacgttcaac ttccgcatca agatgatggg
    17521 cgataatttc agctagggtc gtttttccgg tgccgggcgg tccccaaaaa atcatagaat
    17581 gactatgtcc ggcttcaatc gctctgcgta acggtttgcc ttcgccaatt aaatgagatt
    17641 gcccgacata ttcagccaag tttcgaggtc gcattttggc tgcaagcggt cgaaaatctt
    17701 cactaaaatc aaaagacaaa ctactcattt taacctctta acgtaaccgc agttggcgac
    17761 gaatatgacg cattaataag aaaatccaag accaaagcac accactgatt acagcaccta
    17821 acaattcctg tgaattaaat tcggcactgt gtaaaatgta ttcaatcacg aaaataaaga
    17881 aacggatcag cacaatatat gccattacta ataggctttg tagccatagc gataagtttc
    17941 gcagaatcag atggtatttc gcaacaaaat aaatcgccac cgataacact aaggcgtgga
    18001 tgcctaaaat cgagccaaga atcagatccc agacgatgcc ggcaataaaa gccgtcccca
    18061 cactcatttt atcaggtaat gccaatgccc aataaattaa caccaaaacg acccaagtag
    18121 ggcgtagccc ttggaatcct accggccaag gcataatctc aagtacaaaa gcaaccacaa
    18181 aaatcgcaat tatcacaagg atctgaaaaa tcgggtttgt tctcattatt ccgctccttc
    18241 ttccgtatga tagttttgtt cattttccgc ttctggttgt gctgccggat tctcatttat
    18301 ctcatcattc tctatttgtt cttcttttgc ctctagctgc acttcagttt tcttgttaga
    18361 catctgtttt aaacgttcaa atggattcac gctattacgt ctttcttcaa caacttcacg
    18421 tacttgcgct ggcgacaagc tttgggagta gtttttctct tccgccgtcg gccaaagcag
    18481 taataagtaa cgtaagcgat caaatgaggc taacggacga gcaacaattc tggcaaattg
    18541 acttttggta tcattttcaa ccgtttctac aatcgccacc ggatatccct cagggaaacg
    18601 tccacctaag cctgaagtca ccagcacatc accttttacc acatcaatag aacgaggcaa
    18661 gttatcaatg accaattcat tattcacccc tgtaccactg gcaatgccac gtacatcatt
    18721 gcgtagcact tgaacaggaa tagcatgagt aatatcagag agcaataaaa cacggctaga
    18781 tttttcccct acagaaataa cttgtccaac aacacctctt tcatcaataa taggttgccc
    18841 gacaaaagca ccgtctaaac gcccttgatt aatcactact tgctgacgat aagcatccat
    18901 ctcagcagct aatacttcag caattttttt atactcatct tgccgaagcg gagaactcaa
    18961 taacaatctt aaacgctgat tttcaacctt tagctgatca agcaataata aatcggcact
    19021 tttttctctt agctgctctt ttaataaatt attctcaagc tgtaatttat tattatcaat
    19081 aaaattgcca cttaccccat ctaaaattga acggggggta ttagcaaaat aatataatcc
    19141 acttaccgcg gtttctaata gattacgcgc ttgaatcatt aaagagctac gcccatcgga
    19201 aataatcagc ataatagaaa atatcactgc gataatcagg cgcatcccta aagagggagc
    19261 tttagcaaaa ataggtttca ttagagaaat atatgtgaat ttattgggaa tctataacga
    19321 aaattgacaa tagaatcaat ccattgccaa cctccattta aacagctgct aagagaaatg
    19381 tattaatcat caatactaaa tacatcacca ccgtgcatat cgatcatttc taatgcttta
    19441 ccaccaccac gagctacaca agttaatgga tcttctgcta ctacgacttg cacgccagtt
    19501 gaatcagaaa gtaaacgatc taaattatgt aataatgcac cacctcctgt taacaccata
    19561 ccgcgctcaa aaatgtctgc tgccaattca ggtgggcatt gctctaagac tgatttaact
    19621 gcctctacaa taccatttaa tggttgttca attgcttcta atacatgtct tgagttaagc
    19681 tcgaaagtac gaggagcgcc ttcagctaaa ttgtgtccgt gtacttccat tgttttaaca
    19741 tcatcatcgg attcaatctt agcactagca atttcttgtt taattcgctc tgccgttgct
    19801 tcaccaatag cagaaccaaa atgacgacgt acataagcaa taatagcttc atctaactta
    19861 tcaccaccaa tacgcacaga agttgaatac acaatgccgt ttaaagaaag cactgccact
    19921 tcggttgtac cgccaccaat gtcaattacc attgacccca ttgcttcgtg aaccggcaaa
    19981 cctgcaccga ttgcagccgc cattggctct tcaattaaat agacttcacg cgctcctgct
    20041 ccaattgcag attctttaat tgcacggcgt tccacttgtg ttgcacctgc tggcacgcac
    20101 actaatacac gagggcttgg gcgcataaag ttattactat gtacttgttt aataaagtgt
    20161 tgcaacattt tttctgttac aaaaaaatcc gcaatgacac catctttcat tggacgaatc
    20221 gccattatgc tttttggtgt acggcctagc attaattttg catgtgagcc taccgccgca
    20281 atacttttta gcgatcccat acgatcttga cgtacagcaa ccactgaggg ttcatctagc
    20341 acaatacctt gacctttaac ataaaccagt gtatttgctg tcccgagatc gatagaaaga
    20401 tcgtttgaaa ataatcctaa aaatttttta aacataaaag aatccgttaa aataaaatta
    20461 ttcaaaaata agcacatttt atagtgcgaa cattgctact aatatagcaa aaaagcccgt
    20521 cattcatcaa tgaaaaaatt taaactccac tagaaaattt gcagagcaag ttgataagta
    20581 taaatcagta aactaaaagc gataaagtac ataattagcc cggtaacagc atctaaaatt
    20641 tgccaagttc ttcgctttgc aaaataaggg gaaagtaagc ttgctccata acctatgcca
    20701 aaaaaccaaa taaatgagca aagtaatgca cctgctaaaa agtatatttt accgttaaaa
    20761 tctaatttcc caccgatact gcctacaatc acaaccgtat caatataaac gtgaggattt
    20821 aagaatgtaa tcgcaaaggt aatcagtaaa gcctttttta agctcgttgc attctctcca
    20881 cttgccacaa ggtattcacc acttttaaat acgctgataa atgaacggct accgtagctt
    20941 aatagaaaaa tggcccctaa aagcgaaata atgaaactta caacaggcaa ttccgcaatt
    21001 aacgtgccta agcctagcac acctatcgtc attaaaaata catcacctaa aaaacagagc
    21061 aatgcaatcc aaaatatgtg ttgttttaaa atcccttgct ttaataaaaa ggcattttgt
    21121 gcgccaatag agacaattaa gccaaaacac actataaatc cttgaatgaa aatatccatt
    21181 ttttctccaa aatcgcataa caagcggtca attatacaaa aaattttgca aaacttcggt
    21241 ataatttatc gaatactctt ttgactgaat aggaaatttt ttatgactga tactagccag
    21301 acttcatctt gcgttgtcat tgcgattgcc ggcgcatctg cctcaggtaa gagcctgatt
    21361 gcctcaacca tctataaaga actcaaaaat gaattgggaa cagataatat cggtattatt
    21421 tccgaagatg cttattatag agatcaatct catctaacaa tggaagaacg gattaaaacc
    21481 aattacgatc accctaattc aatggatcat catttattgg ttgaacattt acgccaatta
    21541 aaacaaggta atgcgattga aattccagaa tatgactata ccgaacataa tcgtaaaacg
    21601 accacgaagc actttgaacc aaagaaaatc attattttag aaggtatttt attgctgaca
    21661 gatgagaata ttcgcaatga aattaatgtt tctattttcg tagatgctcc tctggacatc
    21721 tgctttatcc gccgcttaca acgtgatatg gtggaacgtg gacgttcgat ggaatcagtg
    21781 attagtcaat atcgcaaaac cgttcgccca atgttcttac aatttatcga accctctaaa
    21841 caatatgctg atattattgt gccaaaaggt ggcaaaaacc gtattgccat tgatattctt
    21901 aaagcacaaa ttaagcaatt actaaaataa aataggagct aaatatgcgt ttatgtgata
    21961 cagatattaa acgttactta gatgaaggta ttattgccat aacgcctcga ccttcagacg
    22021 ataaaatttc tggcgccact gcagatgtgc gtttaggtaa ttcgtttcgt gtatttcgtg
    22081 aacataaaac gccctatatt gatttaagtg gccctagaga agaagttgcc gctcagttaa
    22141 ataaagtgat gagtgatgaa attatcatcg gtgatgatga agcatttttc cttcatcccg
    22201 gtgaccttgc actcgcaaca acccttgaat cggtttcctt accagccaat atcgttggat
    22261 ggttagatgg tcgttcgtca cttgctagat taggcttaat ggtacacgtt accgcccaca
    22321 gaatcgatcc gggttgggaa ggcaaaattg tattggaatt ttttaatgct ggaaaattac
    22381 ccctagcttt acgccctaat atggcaattg gcgcattaag ctttgagatt ttaagtggtg
    22441 atgctgcaaa accctataat gcgcgaaaag atgcaaaata taagaaccag caaagtgcca
    22501 tttcaagtcg gattaatcaa gattaatata gtacatgcct tgcaatcata cattaactat
    22561 gttagttttt taatcagttt attacacagt aaggagtata actatgttac attatgcagt
    22621 cgtatttttt gtcatcgcta taatcgcagc gctattagga tttggtggta ttgctggaag
    22681 tgctactgaa attgccaaaa ttctcttttt tgtcttttta atacttactg ttatttcgtt
    22741 cttcttcaag
//
LOCUS       DANLXB010000008        22390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLXB010000008 DANLXB010000000
VERSION     DANLXB010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            26..892
                     /gene="prmC"
                     /locus_tag="PXD41_000213"
     CDS             26..892
                     /gene="prmC"
                     /locus_tag="PXD41_000213"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6287781.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            901..1767
                     /locus_tag="PXD41_000214"
     CDS             901..1767
                     /locus_tag="PXD41_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL6287782.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            1857..2711
                     /gene="kdsA"
                     /locus_tag="PXD41_000215"
     CDS             1857..2711
                     /gene="kdsA"
                     /locus_tag="PXD41_000215"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL6287783.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            2932..3879
                     /locus_tag="PXD41_000216"
     CDS             2932..3879
                     /locus_tag="PXD41_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL6287784.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            3977..5149
                     /locus_tag="PXD41_000217"
     CDS             3977..5149
                     /locus_tag="PXD41_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL6287785.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            5166..5849
                     /gene="lolD"
                     /locus_tag="PXD41_000218"
     CDS             5166..5849
                     /gene="lolD"
                     /locus_tag="PXD41_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL6287786.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            5846..7111
                     /gene="lolE"
                     /locus_tag="PXD41_000219"
     CDS             5846..7111
                     /gene="lolE"
                     /locus_tag="PXD41_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL6287787.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(7186..9117)
                     /gene="thrS"
                     /locus_tag="PXD41_000220"
     CDS             complement(7186..9117)
                     /gene="thrS"
                     /locus_tag="PXD41_000220"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL6287788.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(9284..10633)
                     /locus_tag="PXD41_000221"
     CDS             complement(9284..10633)
                     /locus_tag="PXD41_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6287789.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLIISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(10908..11399)
                     /locus_tag="PXD41_000222"
     CDS             complement(10908..11399)
                     /locus_tag="PXD41_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL6287790.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            11480..12247
                     /locus_tag="PXD41_000223"
     CDS             11480..12247
                     /locus_tag="PXD41_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL6287791.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(12238..13032)
                     /locus_tag="PXD41_000224"
     CDS             complement(12238..13032)
                     /locus_tag="PXD41_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL6287792.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(13093..14679)
                     /locus_tag="PXD41_000225"
     CDS             complement(13093..14679)
                     /locus_tag="PXD41_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL6287793.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(14865..16718)
                     /gene="dxs"
                     /locus_tag="PXD41_000226"
     CDS             complement(14865..16718)
                     /gene="dxs"
                     /locus_tag="PXD41_000226"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL6287794.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(16763..17575)
                     /gene="suhB"
                     /locus_tag="PXD41_000227"
     CDS             complement(16763..17575)
                     /gene="suhB"
                     /locus_tag="PXD41_000227"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL6287795.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            17756..18790
                     /locus_tag="PXD41_000228"
     CDS             17756..18790
                     /locus_tag="PXD41_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL6287796.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            18800..19684
                     /locus_tag="PXD41_000229"
     CDS             18800..19684
                     /locus_tag="PXD41_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL6287797.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
     gene            19823..20800
                     /locus_tag="PXD41_000230"
     CDS             19823..20800
                     /locus_tag="PXD41_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL6287798.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            20888..21919
                     /locus_tag="PXD41_000231"
     CDS             20888..21919
                     /locus_tag="PXD41_000231"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6287799.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            22007..22228
                     /locus_tag="PXD41_000232"
     CDS             22007..22228
                     /locus_tag="PXD41_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287800.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
BASE COUNT         6749 a         4591 c         4863 g         6187 t
ORIGIN      
        1 tcctaaaaaa tagaaattct aaataatgga ttaccgagag tggctcactt ttgctgagca
       61 aaaattactt gaaaatagcg gggcagatcc atacctaaac gcaaaatttg atgcaaattt
      121 gctattgcaa gcagtcacaa aacgttcaaa atcggccatt tttgcttttt cggaaaccct
      181 actttctgaa agcgagcttg cagaattagc ggaaaaatta gctcggcgtg ccaaaggtga
      241 accaatggca tatattttag gctatcggga attttggtcg ttgccgttaa aggtttcacc
      301 ggcaacgctg attcctcgcc ctgatacgga acgactggtt gagttggcgt tggaatatgc
      361 taacaagcgg ttaggaaatc agaaaatgtt gcaaattctg gatctcggta ccggcacggg
      421 ggcgattgcg ttggcactgg cgagtgaatt aggcgagaaa gcccaaatta tcggggtgga
      481 tttccaaaat gaggcggtgc aactggcaga agaaaatcgc cgaaacttag gcttaaatca
      541 agttacattt ttacaaagcg attggttcag ttcgcttgca aatcaacaat ttgatttaat
      601 tgtctcaaat ccgccttata ttgatgaatc ggacgaaaat ttgacggtgg gagacgtacg
      661 ttttgaacct ttaaccgcat tagttgccga taataagggg ttgagcgatt tgcaaaaaat
      721 catcgaaaat gcaccgcttc acttaaaacc gcaaggggcg ttaatgctgg aacacggctg
      781 gaaacaaggt aacttggttc gagatttatt tgatttacac ttgtgggaac aggtagaaac
      841 tgctcaagat tatgccggca atgaccgagt aaccaaagcg attttaaaat aaggcagaaa
      901 atggacgata ttattgaaga attgttaaaa gagttggaag atccgaaagt aaccatcagc
      961 gaaaccgagc tgaaaaagtt tctttatcgt gaaattttac gattaactac gctcattgat
     1021 aagaatgtaa gtgagcaaca agtgtttggt cagatgtctg cgttggtgaa aaaagctcgc
     1081 tataacgtga atggcgaagg cgatgaagag agaattaacc aattacttca tttagtctat
     1141 cgtgaatggg gctttcattg ctactatgaa gactatttcc acaccgaaaa tttgttgcta
     1201 aatcaagtaa ttcgcaaacg gcgtggaatg ccggtttcac ttggggcggt ggcgctttat
     1261 ttatccgccg tattggattt gccgctttac ccggttaatt ttccgactca gcttgtgtta
     1321 cgggctgaaa tacaccagcc gaacggggca accaaagtgc gttttatcaa cccgtggaac
     1381 ggtgaatttc tcaccatcga aatgctgaat aaatggctgg aaggagaaat gggctttggc
     1441 gtagaagtta cccctgattt gttaagacga gcagaaccac aagagttgct ggaaagggtc
     1501 gaaactgtgt ttaaaatggc acttacccgt gaaggcaaat atgaagaaac cttacgcttg
     1561 attgaatacc gcttggcatt tagcccggaa gatccgtacg aaatcagaga ccgaggaatg
     1621 gtactggcaa gtatggattg ctaccaagca gcattagaag atattaatta tttcattgac
     1681 caatgccctg aagatccttc tgccgaaatt ttaaaaatgg aagtgaaagg actgcaacaa
     1741 aaaagccaag aaagtgtggt gcattaagct gagaagtagc cccaaagggg ctgagctatg
     1801 attaacctag tacggctctg ccgtgctagg cagaaaataa gaaacaagga ctccctatga
     1861 cagataaaat tgtaaaagtt ggcaatattg aagtggctaa tcacaaaccg tttacgcttt
     1921 ttggtggtat gaatgtgctg gaaagccgtg atatggcact tagagtatgt gagcaatatg
     1981 ttgaagtcac gcaaaaacta aatgtgcctt atgtgttcaa agcctcattt gacaaagcaa
     2041 accgttcttc aatccactct taccgtggac cgggaatgga agaaggctta aagattttcc
     2101 aagaattaaa acaaaccttt ggcgtgaaca tcattaccga tgttcacgaa atttaccaat
     2161 gtaaacctgt ggcagaagta gttgatgtga ttcaactacc agcatttttg gctcgccaaa
     2221 ccgatttagt ggaagcaatg gctcgtaccg gtgcggttat taacgttaaa aagccgcaat
     2281 ttttaagccc gggtcaaatg gggaatatcg tagaaaagat tgctgaatgc ggcaacgatc
     2341 aagtgatttt gtgcgaccgt ggcactaact ttggctacga taatctagtt gtggatatgc
     2401 ttggtttcgg cattatgaaa aaagtgtcga aaggttgccc ggtgattttt gatgtgactc
     2461 actcattaca atgccgtgat ccattcggtg cggcttccgg tggtcgcaga gatcaagtaa
     2521 ccgaactggc acgctccggt atggcgattg gtttagccgg cttgttctta gaagctcacc
     2581 cggatccaaa ctcggcgaaa tgtgatggtc catctgcatt accgctgtca aaattagaag
     2641 cctttgtttc acagatgaaa gcgattgatg agttggttaa gagctttgaa gaaattgata
     2701 cttccaaata aactttctcc gcattaaatc ctttcctact ttctttgctt cgccaaagaa
     2761 agtaggcaaa gaaaggcgac cctacttcgc tacttttctt cgcttagtgt gaatgggctt
     2821 aacgaaaaat ttacattcgc ttcgctcaga gtaaattttc ctacccatta aaacacgctc
     2881 aggtagctca gaagggagtt agaaaggtaa aagacagaat aggagaaaaa aatgctaaat
     2941 attgtttttc ttgaccgtac cggtattcct gccactcacg atattcctcg tccgaatttt
     3001 ccacatactt ggacggaata tgccaccacc tctgccgatc aaacttttga gcgggtaaaa
     3061 gaagcggata ttatcattac cagcaaagtg ttactccagc gtgacttgct ggctaaatta
     3121 ccaaagctga aattaattgc gatcacagca accggcacga acaatgtgga cttagcggca
     3181 gcaaaagagt tagggattgc agtgaaaaat gtaaccggct attccagcgt taccgtgccg
     3241 gaacacgtca ttggtatgat ttactccctg aaacatcgtt tagccgatta tcaccgtgat
     3301 ttaattacgt ctgaccgctg ggcaacttgc ggccaatttt gctatgtaga ttacccgatc
     3361 cacgatgtgc gaggctcaac cttaggcatt ttcggtaaag ggaacatcgg ggctgaagtg
     3421 gcacggctgg cacaagcggt cggaatgcag gttatttttg cagaacatca aggcgcaact
     3481 gaaattcgag aaggctacac cgcctttgaa gaggtattca aacaagcaga tattatttca
     3541 ctacactgcc ctttaaccga gcagactcaa aacctgatta atgcagaaac cttagcctta
     3601 atgaagccga ccgcttatat tatcaatacg ggtcgaggcc cactgattga tgaacaggca
     3661 ttgcttgagg cattagagca aggcaagatt gccggcgctg cgttagatgt tttagtgaaa
     3721 gagccgcctg aaaaagacaa ccctttaatg ttagccgcaa aacgtttacc gaatttactg
     3781 attaccccac acgttgcgtg ggcaagcgat tctgcggtta caacactagt gaataaagtg
     3841 acacaaaata tggaagagtt tgtagcaacg ggtatgtagc ttgaagtagg ggctggtcct
     3901 gtgccagccc taatattaat agaatgagag ggcgggtata aaacccgccc ctaccaatat
     3961 cattttagaa aaacagatga atttaacccc tttttttatt gcttttcgct attttagatc
     4021 gaaaagtgct gaccgtttcg ggcggttagt caccaatctt gccagccttg gcattgtgct
     4081 gggcgtaatg gcattggtga ttgtgctgtc ggttatgaac ggtttggaaa atatgcagaa
     4141 aaccaatctg ctatccacct tgccgcacgc tatcatcacc cctcaagagg ggcattttgc
     4201 caaaggtgaa aaactggctc tacctgaatt tgccaagcaa agtgtggtga ttaaccgtgc
     4261 gaatgtgatt atccaaagtt cacaaggcat taacgccggt cagttaatcg gcgtggaaaa
     4321 tgccacagac gatccgttgt tagtggcgga aaatatcccc gcattattgc ctagcggtga
     4381 atttaaggta gtaattggct ctcgtttagc caataaattg aacgttacgg taggcgataa
     4441 gctccgctta atgatcactg aaaacagcca atatacgcca cttgggcgag tgccggtaca
     4501 gcgtttgttt gaaatttcgg gcgtttatca atctaatcgt gaagcgagcg aatttaccct
     4561 ctttgctaat ttagctgatg tcgggcgttt gcttcgcatc agcgaagatc aagtacaagg
     4621 cgtgcgttta tatttgcaag atcctttcca agttaccgaa cttagccaat atttcgatgc
     4681 agaacgctac caaatcagtg attggcgtga gcaaaaaggc gaatttttcc aagcggtgaa
     4741 aatggaaaaa aatatgatgg gcttactcat cagcctgatt attgtggttg caatttccaa
     4801 cattgtgact tcactcagtt tgatggtggt agacaaacag ggcgaaattg caattttaca
     4861 aacccaaggc ttaaccaaaa aacaagtgat gcagattttt gtgttccaag gggcgattgt
     4921 cggagtaatt ggctcgatta ttggtggttt gctcggcgta ttgatcgcct acaatttaga
     4981 tcagattatc ctgctattaa acccgagcat ccatctgcct accctaattt caggcacgca
     5041 aattgcggtc attgtagggg tgtcgatgtt gctttcactc ctttgcacgc tttacccggc
     5101 ataccgagcc tcaaaaattg agccggcaca ggcattgaga tatgaataat aagaacggaa
     5161 ataaaatgac agaattactt cgctgtgaac atatcagcaa attttacgat gagggcgaac
     5221 agaaagttca ggtgctaaaa gaggtgtcat tttcgatgaa cgaaggtgag ctggtagcga
     5281 ttgtcggtag ttcaggttcc ggcaaaagca ccctattgca cacattaggc gggctagatc
     5341 agccaagcac cggtgaagtc tggattcgag ggcaatctct gcaacagctc agttcagaca
     5401 aattagcgtt attgcgtaac caaaacttag gctttgtgta ccaatttcat cacttaatgg
     5461 cagactttac cgcccttgaa aatgtgatga tgccgatgct gatcggcaaa cagaacaaaa
     5521 ctgaagctgc caatcgtgcc gagaaaatgc tacaagcggt cggattagct catcgaatga
     5581 cacatcgccc atcagcactt tcaggcggcg aacgccaacg ggtggcgatt gcccgagcgt
     5641 tggttaataa tccggctctg gtacttgccg atgaaccgac cggtaattta gaccaaaaaa
     5701 ccactgaaag catttttgag ctgattcaac agctcaacca agagcagaac attgcgtttt
     5761 tattagtaac gcatgattta aatctagcga ataaactttc acgtagtctt gtaatgcgag
     5821 atggcgtgtt aagcgagggg agcttatgag tacgccgttt ttcattagct ggcgttacca
     5881 acggggcaaa cagaaaaaca aactggtttc actgattgct ctcttttcca acatcggtat
     5941 tgcccttggg gttgcggtat taattatcgg gctaagtgca atgaacggct ttgagcgaga
     6001 gctgaataat cgtgtgcttt cggttgtgcc acacgctgaa ctggtttcgt ttcaaggcaa
     6061 tcagcctcaa ccaatttttg atagcaaaaa attagaggca ttgataaaaa aatcgcaaaa
     6121 tgtgaccgct agttcgcctt ttgtcagctt taccgcctta attgaaaatg gggctcagct
     6181 taaaatcgcc caggtgcgag gggttgatcc taaaaagcaa gatcaggcca gccaattaag
     6241 ccaatttatt ccacccgagc aatggcaagc gttcaatcag caatttcaag ccgatgaaga
     6301 tggcttgatt ttaggagccg gtattgccaa agcgttagaa gttgaggcag gagacgaagt
     6361 tacgctttta attcctcagc caacagaaga cggcaaatta gcccagccct tgcgttttaa
     6421 cctaaacgta accggcattt tgcggctaga tgggcagctg gatcacagtt atgccttaat
     6481 tccactgaat aaagctcaag agctgatgga ataccaagcg aatgaagtgt cagggcttga
     6541 aatcagcctt gccaatccgt ttgatgtaca acagcttgaa atgccacaac ttaacggcta
     6601 tacccaaccg ctttatttga atacgtggat tgataaattc ggttatatgt ataacgatat
     6661 tcaactgatt cgcaccgtga tgtacattgc aatggttctc gtgattggcg ttgcctgttt
     6721 taatattatt tccaccttga ttatggcagt gaaagacaaa caaggcgata tcgcgatttt
     6781 acggacactg ggggcaaata acggttttat ccgccgcatt ttcttatggt atggcttaat
     6841 ttcaggtatg aaaggggcgt tattcgggct gattttaggt gtaattttat cgctaaattt
     6901 aaccgctatt atcaaagcga ttgaagcatt ctttgaggtg aaattgcttt cagacggggt
     6961 ttattttgtt gatttcttac caagtgaatt acattggcaa gatgtcgtct atgtattggc
     7021 agccacgatt atcctaagcc tttttgccag cttataccct gccaaccgag ccgctaaatt
     7081 agaaccggca aaagtgttaa gtgggcatta atcattttcc tattctaata aaaaagcagc
     7141 tacccctcga ttatgtcaga aaggtagctg cttttattta tgttattact cttcgcctaa
     7201 taatttcaac tcacgagcct taatttggtt ttttagaatt tcaactaagt ctgaaacgag
     7261 gtaagtacct aagtctgcac ctttacgggt acgcacagac actttacctt cggcgatttc
     7321 tttatcaccg caaaccaaca tataaggcac acggcgtaag gtgtgctcac gcactttgaa
     7381 gccgactttt tcgttgcgta agtctgcttt cacacgaatg cctgcatcag aaagctgttt
     7441 caccacttgt tgcacataat ctgcttggct gtcggtaatg ttcattacca ctgcttgggt
     7501 tggggcaagc caagttggga agaaaccggc atattcttcg gtgataatcc cgatgaaacg
     7561 ttcgatcgag cctaaaatcg cacggtgaat cattaccggt gtgcggcgac cattatcttc
     7621 tgctacataa gaggctgcta aacgacccgg tagagcgaag tcaagttgca ctgtgccaca
     7681 ttgccattca cgtcctaagc aatcacgcaa tgcaaactca attttcggcc cgtagaatgc
     7741 accttcgcct tcttgaattt catattcaag tccgttgttg cgtaaggcgt tggctaagcc
     7801 tttttctgct ctgtcccaca ttgcatcatc accgatacgg ttttccggac gggttgaaag
     7861 ttttactgca atgttagtaa aaccgaaggt gctgtaaatg tcgtacacca ttttgataca
     7921 gctgattact tctgactcga tttgttcttc agtacagaaa atatgggcat catcttgggt
     7981 aaaaccacgc acacgcatta agccgtgtaa tgaaccggac ggctcgttac ggtgacacga
     8041 accaaattcc gccatacgga tcggtaaatc acggtaagat ttcaagcctt gattaaagat
     8101 ttgaacgtga cccgggcagt tcatcggctt aattgcatat tcacggtttt ccgattgggt
     8161 agtgaacatt aaatctgcgt agttttgcca gtgtccggtt ttttcccaaa gcacacgatc
     8221 catcataaac ggacctttta cttcttggta atcgtactct ttcaatttgg tacgcacaaa
     8281 agtttcaagt tcacggaaaa tcgtccagcc gtcattgtgc cagaacacca tacccggtgc
     8341 ttcttcttgc atatggtata aatctaacgc tttaccgata cggcggtggt cacgttttgc
     8401 cgcttcttcc aaacgttgta aatattcggc taattgtttt ttatcagccc aagctgtacc
     8461 gtaaatacgt tgtagcattt tatttttgct gtcgccacgc cagtaagcac ccgctacttt
     8521 ttgtaatttg aagtggtggc agaaacgcat atttggtacg tgtggaccac ggcacatatc
     8581 aatatattct tcgtggtgat ataacgcagg cgttgccgta cgttcaatat tttcatctaa
     8641 aatcgccatt ttgtatggct caccacgttt ctcaaaggta tctcgagctt cttgccagct
     8701 taccgggcgt tttaccacgt catagttggt ttttgccagc tctaacatac gcttttcaag
     8761 agcgtctaaa tcttcttgag tcaaagagcg gtctaaatcg atatcgtagt agaaaccgtt
     8821 ttcgatagtc gggccgatag ccattttaac gtctgggaat aattgcttga tggagtgacc
     8881 taacaagtga gcggttgagt ggcgaatgat ctctaaacca tcttcgtctt tggcagtaat
     8941 gatttcaagt gtgctgtctt ggctgatgat atcagacgca tcacggcgtt caccgtttac
     9001 acgaccggca atggtggctt tcgctaaacc tgccccgata gattgggcaa cttccattac
     9061 agaaactggg ttgtcaaatg aacgttgtga accgtccggt aaagtaataa ttggcataat
     9121 aaatccttac agtggtaatc catacgagag attacttgtg ttgtttgaat gaaaaaaccg
     9181 cctacaagcg gtcttttttg attaaaattt tgcaatttgc ttattatttc ccttacaagt
     9241 ggggaataaa agcactgaaa ttctagcata aaacaaagaa aaattaaact ttgctgtttt
     9301 cagcggcccc ttcatcaagc tcaatatttt cattttctgt ttgtggatct tgttcaagta
     9361 tttcaagctg agcctggtac tcttgtaccg cttcttcatc aaatggaata agtgcgtcct
     9421 caacaacttc aatttcttca agtgggcttg cggttgcaat tggggtagca tattgcatct
     9481 ctgctcgttc cgctttcgga attgatttgg tgcggaaagc acaaataaat aaactaagtg
     9541 agaacagtcc aaaaagtgca taaaagccat attcagcgga aaggctcatc gcaaaaccga
     9601 taagcggtgg agcaactaac gcccccacac catagcaaaa cagtaaaccc ctgcttactt
     9661 caaccgtgtt catattattc ggcaattcat cgttggcacg ggcaatgctc aaagcatata
     9721 agctaaacag actacagcca aagaaaaagg cgataatata ctgtccccag gcggtcaaat
     9781 tttcttggaa aattgcaaat aatccggcaa gtgcggttaa agtggcaatc actgaacaag
     9841 ctaaaatggc gttacgtctg ccaatacgat tcgataatat cgccatcggc atttggctga
     9901 taaaaccacc gatcatcgag ataatcaaat aaagcgagat ttcacttaat gaaaagctaa
     9961 acttcagcag aaagactgac gccattgtaa aaaagccgtt taccaacatt ccgctaataa
    10021 agctggttgc taaggctaac ggtgaaatcg caaatagttt aggaatacta atgcgctctc
    10081 gagccggaat atcaggctga accattttag ttaaagcaat tgggatcatc gacatcacaa
    10141 ccaaaatggt agataagata aaaatgtttc ggctactaag ttctaaactt aataaactta
    10201 cgcctaaaat aaaggcgaga tagaagataa tgttataagt ggcaagcact ttgcctctgg
    10261 tatcgacatt ggttttttcg cttaaccaac tttcgactaa aagcagcaag ctataatgac
    10321 agaatcccaa aataattcgt aacacgcccc agatccacaa agtatcaatc ataatatgac
    10381 cgagagcggc gatagcaaaa acagcacaga aaacgctaaa tgaacggata tgcccaacac
    10441 ttgatacaat gcggtgagca aaaatagtgc ttaatgccgc cccaataaag aaagcagcgt
    10501 taagtaaacc gatgatgatg tccgttatcc ccatttctgc cagtttgatc cctgctgaat
    10561 ttagaaataa accgtagccg aaaaacagaa aaaagatacc tgaataaagg gagtaaaatt
    10621 tagtgctatt catcaatgct ccttcaaaca ttctgccagt attaaatcat tgtaccgatt
    10681 taataccttt taggcaaaaa agttattatt agcgttgaga aaataacttt tggctatttt
    10741 gattaaaaaa tcaaatgaag gtgattttga aatgtagtaa aaaatagagc aatcagaatt
    10801 gaaaaagggt ttgccgtaac aaagccttta gaaagattag agtttcgaga agaatttgta
    10861 gcttgggcta accaaaacac ttgctaggag tgctttaagc acaccaccta aaataaatgg
    10921 atataagccc gcttgtaata ctgtgccttc tggtacaaag aaagttgagc caagccgaaa
    10981 gcaaaggtga tcacacttgc aattaaggcg acaaataaac ttttccaaaa agagtttaat
    11041 acgcctttat cgctataata gcctaagaaa taggcggttg gaatatagcc taataagtat
    11101 ccgcctgttg gaccaaagaa atgatggaaa cctgaagcac cgccggcaaa gacaggtaaa
    11161 ccaatcgccc cttcaaaaag ataaagtaat actgcagcag ttgcggcttt acgacccatt
    11221 gcaaaaccaa ccacagttaa agcaagtgtt tgccctgtaa tgggtacagg gtacatcggc
    11281 acagaaattt gtgcaaaaat agcaagcagt gttgctccaa taaaagtttt caaccaaaat
    11341 gtagttatac tattggcttc tagccaacgt ttagtttgaa ttaattgcgt agtgaacata
    11401 atcctctcct ttaatatggt taaaatgttc tcaaccgatt atataagaag atgtctttta
    11461 gggtaagagt gaatttaaaa tggtaaaacc agtttatatt tattgtgatg aaggtagcag
    11521 tgaaattggt gttcaatcac tgttattggc agtaaaacag catttacagc gtccggctta
    11581 tctcatcaat gccaaacaaa ttattcaaag caagttttcc gatggctgtt tattaatcat
    11641 gcccggtgga gccgatttac cttactgcaa aaaattaaac ggagaaggca atcgtagaat
    11701 ccgccaattt attgaacaag gtggagctta tctcggtatc tgtgccggag cttattatgg
    11761 ctgtgctgaa ttgaattttg tagggcgtga ctatagcgta aatggtaatc gagaactagc
    11821 tttatttaat ggcattgcgg gcattgcgaa aggcagtctg ccgcagttta ccaacgggca
    11881 actttacgat aaaaacattg gtagcaaagc gatagttgaa gtaacacttg cagagggtgg
    11941 aaaaatgccg ttttattatc acggtggttg ctgttttgaa ccaaattcaa caacagtgat
    12001 ttacaacccg ttggcttatt atcctgatgg ctcagtagca atgatagagg gagagctagg
    12061 gcgaggttac tatctgttgt cgggtgtaca ttttgaatta caagcggtcg tttattggca
    12121 aaaaattgta aattgctgtg aaaatcttga cataaaaaca caagaagaag caatttgctc
    12181 taattttaat gtaaattatg gctcgcaaat ttggcaacat ctaaagcaac gactaaatca
    12241 agcgtaaaaa aataaccttt cgctattctg ccaaatggtt tctgcaatca gatttggtga
    12301 ttctgttctt aattcacata gactattgaa agtcactaaa agccgttccg gtcggttcgg
    12361 ctggccttga aagccaaaca ccggcatatc gggcgagtcg gtttccagta gtaaactttc
    12421 aagaggtagt ttgcggatag cctcacgggt tttgttagca cgttcatagg taatagttcc
    12481 ccccacacca attttataac cgagatcgac aaaacgtttt gcctgttcat agctgccggc
    12541 aaagccgtga accacaccgg ttttggttag ttgggctttt ttgaggaaca caaaaagttg
    12601 atcgtggctt ttacgtgaat gaagattaac gggtaaatta aattttttcg caagggaaag
    12661 ttgtgcctct aaaaattcac attgcttttt ccataattca ggggtagaaa cttcacttac
    12721 cgctttttcc aaaccgattt cggcaatagc ggtacactgt ggatcttgtt ggcttagcaa
    12781 attttccaat aagattaaat cttgttgttg gtgctgttga atatacagtg gatgcaaccc
    12841 taatccatac accaaatttt ccggtttttg tttggcacaa gcggtcactt ttgcaaaatt
    12901 ttttgcaaat acggcaacga taagaatgca ttcaacctga tgctgtttgg cattctcaac
    12961 caattccgga atgcttaaat tcaggctttc tgcgagatag tcgaggtgag tatgagtgtc
    13021 aaaaaatcgc ataataaaac caataaaaac ggggactaga ttgtccccat ttttagcatt
    13081 ttacgcaagc aattagtttg ttacataagc atcttcatca cgagcctcag atggcttgag
    13141 gaaagcaaag aagcaaataa cacaaactac cgtaatcgca aaaccgatat aaactgataa
    13201 ttcataatct aaaccgaagc cgattttgtt gttcgcaagg taagttgcac acacggtagt
    13261 gataaaccat gcaggaatcg agcataccca gtggaatttt ttatagcggt ataagtaacc
    13321 tgcggcagtc cataacataa ccattgcagt catttggttt gcccaagtga agtaacgcca
    13381 taatacgctg aaatcaactt ttgagacaat gaaaccaagt acgaataatg gtacggcaat
    13441 atacaaacgt tttactaagg tacgttgttc taaaccaaag atttccgcta gttgtaaacg
    13501 agcggctcgg aatgcagtgt cacctgaggt gattggtaat actacaacgc ctaatacggc
    13561 aaaaatacca ccgataaacc ctaagaagtg taacgagctg tcatatacca ctttagacgg
    13621 tgaaccggca gagatcgcat cttgtaaggc ttgtgggttt tcatagaatg aaagacctac
    13681 tgcacaccat actaatgcaa ttaccccttc agtaatcatt gcaccgtaga aaataaaacg
    13741 accttctttc tcattttgcg cacagcgagc cattaatggg gtttgggttg cgtggaaacc
    13801 ggataatgct ccgcaagaaa tagttaagaa tagtaatggc caaattggaa catcaccttt
    13861 cacttggaag ttttgggtga atttttccca cgttaagcct tgaccgtctg cattcactgt
    13921 acggaagaag tcgataggat cagtcgcact taagtgagcg ctgactagac catataccat
    13981 acctacagac ataaagagta ataatgctcc gaagaaagga taaattcgac cgatgatttt
    14041 atcaacaggt agtaatgtag caagaatata gtaagcaaaa atgattaacg tccacacaga
    14101 aatcacggtt gctttatcca taccccaaac ggttacgcca cctgatgcta cagattcttt
    14161 aattgcttca acatcaccta attccattgc actttgggtt gcacctgcaa tatccatggt
    14221 gatggtagag agtaactgag cagggcttgc aacgaaaact acgcctacta ataaaagcaa
    14281 gatgagcgcc attacgttga tgaataactt gactggacga cccaagaatt tccctgccag
    14341 atttggcatc gttgcgccac cgttgcggat acttaacata ccacagaagt agtcgtgtac
    14401 tgcaccggca aaaatacaac caatcacaat ccaaagcatt gcaactggtc cgtataaggc
    14461 accaagtatt ggtccaaaaa tagggccggt accggcaatg tttaataatt gaatcagcca
    14521 aatcttggtt ttagacattg gcatatagtc aacaccgtcg ttcattgcat aagccggcgt
    14581 tgctcttttc gggttaatca cgaagatttt ttcaatgatt tttccgtaag taaagtagcc
    14641 aagaacaagc acggctacac agaaaaagaa ccacaacata gtagaaatcc tataaattga
    14701 gataaatgat catttttagc agaactgata aaggcgtgcc attgtaagtg aggagtgagg
    14761 ataaagtaaa atgaattgtt agatttgtgt gaataattta ctgaaaatgt gaggttcatc
    14821 aaaaaatccc tttgttctgc gtcaatcaaa gggacttttt aaagttaaat atcgaatttt
    14881 tgaattttcg cttcaatgcc ttgggcatct aatccaagat cggcataagc ttcagcttga
    14941 gtagattggg gaacgaaaaa gtcaggaata ccaagcatta caagcggttt gattttgccg
    15001 atattttgca aatattcatt cacaaaacta cctgcgccac cttgaatagc attttcttca
    15061 agcgtaacta acaactcgtg tgaatccgcc actttttgaa gtaatgcttc atctaatggt
    15121 ttaatgaaac gcatatctac caacgtgtag ttatgttttt cagccacaat ctttgcttca
    15181 tcaagcaaag caccaaaatt taaaatcgca acttttttac cttcacgaat aatgtttcct
    15241 ttacctactt caagtctttg cattggctca agttttaccc ctttagcatt gcctcgaggg
    15301 taacgaatag cacttggcgt attcatcgtg taagcggtat aaagcatttt tcgcatttca
    15361 ttttcatcgc tcggtgccat aatggtcata ttgggaatac aacgcataaa acttaaatca
    15421 aatgcacctt ggtgagtttg cccgtcagcg ccgacaattc cggctcggtc aatcgcaaaa
    15481 atcaccggca ggttttgaat agcaacatcg tgaattaatt ggtcataagc tcgctgcaag
    15541 aagctggaat aaattgcgac taccggtttg taacctgcga ttgctaagcc tgccccgaaa
    15601 gtcactgcgt gttgttcggc aatcgccaca tcaaaatatt gttcagggaa acgtttggaa
    15661 aattctacca ttcccgagcc ttcacgcatt gccggcgtaa tgccgataat tttcggatca
    15721 cgctctgcca tttcacatag ccaatcgcca aaaatattgg aataagtagg tgctgctttt
    15781 gattttggta actcggctgc ggtagggtca aatttcggaa cgccatggta gccaatcgga
    15841 tcattttccg caggtgtgta gcctttgcct tttttcgtgc gaatatgcag aaattgaggg
    15901 cctttcagct cacgcatatt gctcaaggtt ttgactaact cgtcaatatt atgtccatca
    15961 atcgggccga tataattaaa gcctaactct tcaaacaaag tgctttcagg ggagaaaatc
    16021 acccctttca tatgctcttc gctttttttc ataaagtttt tgatggtagg cactttatct
    16081 aaaattttct tactgccgtc acgcactgaa gtatagagcg aaccagaaaa aatgcgggca
    16141 aggtggttgt ttaatgcccc gacattttca gagattgaca tttcattatc atttaagata
    16201 accaacatat cggtatgcaa tgcacctgcg tggtttaatg cttcaaatgc cattccggca
    16261 gtgattgcac catcaccgat tacacagacg gttttacggc cggcattttc tttttctgct
    16321 gccaccgcaa tgccaagtcc ggcactgatc gaagtagaag aatgcccaac gcttaacaca
    16381 tcgtaagggc tttcttcacg ccaagggaag gggtgaatac catctttttg gcggatagtg
    16441 tgcatttgat ctcggcgccc agtaaggatt ttatgtgggt aagcttgatg accaacgtcc
    16501 caaattaatt ggtcgaaagg cgtttgataa acataatgca aagctaccgt aagctctact
    16561 acccctaagc cagaggctaa atgtccgcta gtttgactga ctgattccaa taaataggct
    16621 cgcagttcat caactacggt ttgaagctgg tctttagaaa gtaaacgtaa atcttccggt
    16681 gagttgattt cgcttaacag aggatacttc ttttccataa tgttttatta cccacaacca
    16741 tcaaataata gatgatatta aattaagctt tgagttcttc ggtcaaagta ggctgaatgc
    16801 tatttaaaat ttctttaacc acacggccgt taccaacaac cagattacct gttttcaagt
    16861 aatctgttcc gccaacaaag ttagtcacaa ttgcaccggc ttcacgggca ataagttcac
    16921 cggcggcgaa atcccacggt tttaagccga tttcaaagaa accatcaaca cgacccgctg
    16981 caacataggc aagatctaaa gcggcagaac cggtacggcg gaaatcagct actccgttat
    17041 tcattaagcc ttcaagcata tttaaatgtg catcacgatg tctgatgact ttgaaaggaa
    17101 aaccggttgc aattacagtg ccttttaaat cacggcgttc tgcatcaatg cgtaaacgga
    17161 actcgtttaa tttagcccct tcgccacgca ccgcagtgaa aagctcgtta cggataggat
    17221 cgtaaactac ccctactgtt gtacgtccgt tttcacgcac ggcaatcgac acagcaaaat
    17281 gaggtaagcg ttttacgaaa ttggttgtac catctaatgg atcgatcacc cattgtacat
    17341 tttcattgct accgtttaac acgccggact cttcggtcac gatcgagtgt tcagggtaag
    17401 atttacggat cacatcaata attgccgctt ccgctgcttt atcgatttca gtcacataat
    17461 cattcgtatt tttttgtaaa acttgtgtat cttgaggcga ttgttcatag cctttggcaa
    17521 taatattgcc tgcttttcgt gccgcacgaa tagcaatgtt taacattggg ttcatatttc
    17581 caccagattt taaagaacat aataaagcac gaattataaa gaatgtagcg aaataaagaa
    17641 acaacaagcg gtctaatctg tgaaaaattt tgcaaaaaaa tggctttttc taaccgcttg
    17701 gagtttggat tcgttataat acctcccatt caagccaccc atttaggtac taaaaatgca
    17761 atttaaagaa aataaccaac ctcgttttaa acacagagaa gaacgccgtt cagatgagtg
    17821 ttccccccgt ttttcagata aaggcaaaat gcgaggaaat gaaggtaaaa gtgacagacc
    17881 gcataagcta cattttaagc gtgacgaggc ttattcacgc tctgagcaga tttatccagc
    17941 agaaggcaaa aaagccagtg gtgaaggtag tgtgcaaatt tgggtaaaag gtgggaatag
    18001 ctcagttaaa gagaaaaaaa acggcccgct ttcaccgaga gcgcctgaga aaattaagaa
    18061 aaatcgcttg gaagagatga aagtctatgg cgaaaatgcc tgtatcagtt tgttccaaca
    18121 acgtcctgaa tctattgtac gtttatgggc aacagtggag ggggcaaaaa aattaggcga
    18181 tttaatgagc tatttggctc agcacaaaaa agcctatcac gttattgacc gtgaagagat
    18241 ggagcgagtc accggtactg aacatcacgg cgatatgtgc ttattggtga aaaaaacggc
    18301 ttcatttgtg ctagagggct atttacaagt gccgaaaaaa caagattgct tggtactgtt
    18361 agatggtgta aacaatgctc agaatgtggg gggaatcatc agaacgtgtg ctttttatgg
    18421 tgtgaaaggc attattactg aaaatgtgga tagcttaaac tccagtgctg cagctcgtgt
    18481 cgcagagggt ggtttggaat ttgtgcgagc gttagaaact aaaaacaagc atattgcttt
    18541 ggtacaactc cgccaagccg gttatcaaat tgtccacctc acacgccata agcaagcccc
    18601 ttctttaacc aaaattaagc tggcggaaaa ggtggttttt gtattaagtg agattcctgc
    18661 aagtgatgtg gcttacgcag aagacacaac aatacagctt tcctttaata atccgttaaa
    18721 tagtggttta aatgtggcgg taaacgcagg tattctactt aatcaatggt atcaaaccca
    18781 cattctttaa ggaattgaaa tgaatcagca aaaaccgttt gaagtgattg cgattgttgg
    18841 cacacctcgc cacgacagtg catttgaaac acatcttgcc gtttataatt ggttaaaaga
    18901 tcgtgattat caaattttag tggaaacaga ggttgccact cagttacagc ttaaggaaag
    18961 ctacagttta gatcagattg ggcagcgcgc agagttggtg attgtgatag gtggcgatgg
    19021 taatatgctt ggcatcgccc gagctttggc taaataccga gtgccactga taggcattaa
    19081 ccgtggcaat ctgggttttt taaccgatat cgcacctcaa acggcttttg aacagcttta
    19141 tagttgctta gtcaaaaatg agtatgtgat tgaagagcga ttcctgttag aggctttcat
    19201 tgagcgcaac ggtaaaatta ttgccgcaaa taatgccttg aatgaaattg tggttcaccc
    19261 aacccaagtg gctcgaatta ttgaatttga agtttatatt gacggaaaat tcgctttttc
    19321 acaacgtgca gatggcttga ttgtggcaac gcctacaggc tcaaccgcct attcactttc
    19381 tgctggtggc ccgattttaa ccccgaatat gaatgcaatg gcattagtgc cgatgcaccc
    19441 tcacactctt tcttctcgtc ctttggtggt tgatggcgat agtcaaattt cgcttcgttt
    19501 tgccaaatat aatacccctg atttagaagt gatttgtgac gggcaggtga atatgcactt
    19561 tacgcctgaa gatagagtct tggtgcgtaa aagcccggat aaattacagc tgctccattt
    19621 aaaagattat agctacttta ctgtattagg ttctaaatta ggctgggcaa gtaagttgtt
    19681 ttaaacacaa gcggtgtttt ttctgattaa atttgcaaat gcaatatgaa ttgatttcat
    19741 atacatttca aaaatatatc atttttattc aataaaaatt tgtggttcaa taagctatct
    19801 gaaaaataaa ggggacaata aaatgacaac aaattttaaa tgccaagtgc atactattga
    19861 atttaatgaa gattaccaac cggagcaaag cacccgttta accaccaact ttgccaacct
    19921 tgcccgtggc gaaaaccgca aacagaacct gcaaaatgcg attgcgatga tcaataaccg
    19981 ttttaacgat ttagcgaact gggataaccc gaatgcggat cgttattcgg tgaaattgga
    20041 tattgtctca ctggatattg atgtggaagg caaaggcgag tttttccctg cgattgagtg
    20101 gctgaaaacc tatgttatcg actacaaaac cggcaaaacc attgatggca ttatcggtaa
    20161 taacttctct tcttttgtgc gtgattacga tttcagcgta ttgttgttag atcacaataa
    20221 agacaaaccg caatttagcg tgccggaagg ctatggcgag ttacacggca agctgtttaa
    20281 gcatttattg gcatcgcctg aatataccgc aaaatataaa aaaccaccgg tgatctgttt
    20341 aagcgtggca accacccgta cctacacaag aaccactaac gttcacccaa ttttaggtgt
    20401 ggaatatctg caagatagtt attcattaac tgatgcctat tttgcgaaaa tgggcttaaa
    20461 agtacgttac tttatgccgc caaaatccgt tgcaccctat gcgttctact ttgatgagaa
    20521 tgcagattta ctcaatgatt acactaactt agagctaatc agcacgattg ccacaatgga
    20581 agcgttccaa aaaatttacc gtccggaaat ttacaatgcc aattcggtcg cagggcaggt
    20641 ctataaaggc agcctgactt accaagatta ttccgtcacc aaagtggaat atgaccgtga
    20701 agaacgcacc cagttggcga tcaaacaggg taaatacacc gaagagcatt ttattaaacg
    20761 ttaccaagcg attttagagg cttgggcgac ggaggaataa acgtagggtg ggcgtaagcc
    20821 caccataaaa tgagatataa ccaatggtgg gcttacgccc accctacttt ttataggaaa
    20881 attcaaaatg agcaacattc ttctcccaac ctctaccgcc ggcagcctac caaaaccttc
    20941 gtggcttgcc gagccggaaa aactgtggtc accttggaaa tttgaaggcg aggaactact
    21001 tcaagccaaa cgtgatgccc tccttgtttc ccttgccgaa caaattgcgg cagggattga
    21061 tattgttagt gatggcgaac agacccgcca gcactttgtg accaccttta tcgagcattt
    21121 ggaaggggtg gattttagca agcgtgaaat cgtgcgcatt cgtaaccgtt acgatgccag
    21181 cgtgccgagc gtggtggggg cagtttcccg cccgaaatcg gtgtttgtgg acgatgccaa
    21241 attcttgcgt gcgcataccg acaaaccaat caaatgggca ttacccggcc cgatgacaat
    21301 gatcgacact ctctatgacg gtcattacaa aagccgtgaa aaattggcgt gggaatttgc
    21361 caaaattctc aacgaagaag ccaaagagtt ggaagcggca ggggtggata ttattcaatt
    21421 tgacgaaccg gcatttaacg tcttcttcga tgagctgaac gactggggcg tggcggcgtt
    21481 agagcgtgcg gcggaaggct taaaatgcga aacggcggtg catatctgct acggctacgg
    21541 cattaaagcc aataccgact ggaaacagac cctcggcaac gaatggcgtc aatacgaaga
    21601 gagtttcccg aaactgcaac aatcaaaaat cgacattatc tcgttagagt gccaaaactc
    21661 ccgtgtgcca atggacttaa tcgaattagt gcgtggcaaa aaagtaatgc tgggagcgat
    21721 tgatgtggct accaacatta tcgaaacacc ggaacaagtg gcagatacgt tacgcaaagc
    21781 attacaattt gtcgatgcgg ataaacttta tccaagcacc aactgcggaa tggcaccact
    21841 ttcacgccaa gtcgcacaag gtaaattaca ggcactcagc caaggggcag cgatattgcg
    21901 tgcggaattc gcaaaataat tttgcgatct gcatcgaaaa tatcaacttt gctttttgct
    21961 cgtttccaga ttttcttcca aaataacagg aaatgacgga ggcactatgc taaatctatt
    22021 taaaaagcca attaagaaaa gctcctttga ggcttgggca aaactaatgg acgatgtggc
    22081 aaaagttgca attttagcaa ttcctgttat tctctatgga gaatattcac tgctaatgaa
    22141 atttacacac tcaattacct tatttgcagt agtttatttt ttgttagcaa cggcaagatt
    22201 gtttcgagaa acagcagagg agatgtaaat ggacggattg acaatcggat tatttctttt
    22261 gcttgcattt tcatttgctg cataccaatg ggcaaagcat ttaaaagatc ataatcatta
    22321 attcaatgaa taatactaag cggtcatatt tggtaaattt tttacaaaat gtgaccgctt
    22381 gtttttcttt
//
LOCUS       DANLXB010000009        22008 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLXB010000009 DANLXB010000000
VERSION     DANLXB010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22008
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            6..356
                     /locus_tag="PXD41_000233"
     CDS             6..356
                     /locus_tag="PXD41_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6287801.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            349..672
                     /locus_tag="PXD41_000234"
     CDS             349..672
                     /locus_tag="PXD41_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6287802.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            780..1259
                     /gene="smpB"
                     /locus_tag="PXD41_000235"
     CDS             780..1259
                     /gene="smpB"
                     /locus_tag="PXD41_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL6287803.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            1462..2769
                     /gene="serS"
                     /locus_tag="PXD41_000236"
     CDS             1462..2769
                     /gene="serS"
                     /locus_tag="PXD41_000236"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL6287804.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(2828..3154)
                     /locus_tag="PXD41_000237"
     CDS             complement(2828..3154)
                     /locus_tag="PXD41_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287805.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(3147..3359)
                     /locus_tag="PXD41_000238"
     CDS             complement(3147..3359)
                     /locus_tag="PXD41_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287806.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            3546..6131
                     /gene="leuS"
                     /locus_tag="PXD41_000239"
     CDS             3546..6131
                     /gene="leuS"
                     /locus_tag="PXD41_000239"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL6287807.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            6331..6819
                     /locus_tag="PXD41_000240"
     CDS             6331..6819
                     /locus_tag="PXD41_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287808.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            6862..7887
                     /gene="holA"
                     /locus_tag="PXD41_000241"
     CDS             6862..7887
                     /gene="holA"
                     /locus_tag="PXD41_000241"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL6287809.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(7888..8073)
                     /gene="yacG"
                     /locus_tag="PXD41_000242"
     CDS             complement(7888..8073)
                     /gene="yacG"
                     /locus_tag="PXD41_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL6287810.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(8055..8690)
                     /gene="coaE"
                     /locus_tag="PXD41_000243"
     CDS             complement(8055..8690)
                     /gene="coaE"
                     /locus_tag="PXD41_000243"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL6287811.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(8726..9382)
                     /locus_tag="PXD41_000244"
     CDS             complement(8726..9382)
                     /locus_tag="PXD41_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL6287812.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(9385..10581)
                     /locus_tag="PXD41_000245"
     CDS             complement(9385..10581)
                     /locus_tag="PXD41_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL6287813.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(10578..11030)
                     /locus_tag="PXD41_000246"
     CDS             complement(10578..11030)
                     /locus_tag="PXD41_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL6287814.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(11051..11530)
                     /gene="ppdD"
                     /locus_tag="PXD41_000247"
     CDS             complement(11051..11530)
                     /gene="ppdD"
                     /locus_tag="PXD41_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL6287815.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            11711..13090
                     /gene="radA"
                     /locus_tag="PXD41_000248"
     CDS             11711..13090
                     /gene="radA"
                     /locus_tag="PXD41_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL6287816.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(13145..13375)
                     /locus_tag="PXD41_000249"
     CDS             complement(13145..13375)
                     /locus_tag="PXD41_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL6287817.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(13495..13989)
                     /gene="folA"
                     /locus_tag="PXD41_000250"
     CDS             complement(13495..13989)
                     /gene="folA"
                     /locus_tag="PXD41_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL6287818.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            14065..14220
                     /locus_tag="PXD41_000251"
     CDS             14065..14220
                     /locus_tag="PXD41_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL6287819.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            14217..15185
                     /gene="proB"
                     /locus_tag="PXD41_000252"
     CDS             14217..15185
                     /gene="proB"
                     /locus_tag="PXD41_000252"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6287820.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            15185..15949
                     /locus_tag="PXD41_000253"
     CDS             15185..15949
                     /locus_tag="PXD41_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL6287821.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            15952..16584
                     /gene="nth"
                     /locus_tag="PXD41_000254"
     CDS             15952..16584
                     /gene="nth"
                     /locus_tag="PXD41_000254"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL6287822.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            16781..18031
                     /locus_tag="PXD41_000255"
     CDS             16781..18031
                     /locus_tag="PXD41_000255"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL6287823.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(18132..19067)
                     /locus_tag="PXD41_000256"
     CDS             complement(18132..19067)
                     /locus_tag="PXD41_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL6287824.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(19196..19390)
                     /gene="iscX"
                     /locus_tag="PXD41_000257"
     CDS             complement(19196..19390)
                     /gene="iscX"
                     /locus_tag="PXD41_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL6287825.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(19390..19731)
                     /gene="fdx"
                     /locus_tag="PXD41_000258"
     CDS             complement(19390..19731)
                     /gene="fdx"
                     /locus_tag="PXD41_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL6287826.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(19750..20115)
                     /locus_tag="PXD41_000259"
     CDS             complement(19750..20115)
                     /locus_tag="PXD41_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL6287827.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(20125..21978)
                     /gene="hscA"
                     /locus_tag="PXD41_000260"
     CDS             complement(20125..21978)
                     /gene="hscA"
                     /locus_tag="PXD41_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL6287828.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
BASE COUNT         6627 a         4765 c         4402 g         6214 t
ORIGIN      
        1 acattatgaa tactgtaatt tcccaacgaa aaccaattca ctgggttgga tcaaccttag
       61 atgatattcg tgaatttccg gataacatta aaagagaact cggttttgat cttgatttag
      121 ttcagcaagg cttattaccg agggatttta aagcgatggc aaatttgggt tcaggcgtaa
      181 tggaaattcg agtaaaagat ccctcagggg cttttcgctt agtgtattta gctaaattta
      241 aagatgcaat ttactgttta cacgctttcc aaaagaaaac gcaaaaaaca gcccctaaag
      301 acattgctgt cattaaagca cgctatgctg ccgtaaagga gttagaaaat gaataatatt
      361 gatactaaaa ttcgccatac tacagaagct cagggtaatg tttttgaaga tcttggtttc
      421 cctattgatg aagctcaaaa attgaaatct gccagtcagc aactgattga aactaaactg
      481 atgctaatga atgaaatgag caactggatt gataaaaata atctcaaaca atcagaagcg
      541 gcttctattc taggtgttag ccgccctcga atttctgata tggtcaatgg caagttagaa
      601 aagtttaccc tagatacctt agtcactttt gttgcaaaaa ccggcaaaac aatccaattg
      661 caattatcct gatatttgca aaattttact caaattcaac cgcttgttgc ttttatcatt
      721 cactaacaag gttatttcaa gtaaaattgt gactaatttt ttattaataa acacaaatta
      781 tggcaaaaaa acctaaagtt gcatcaaata cgattgcgtt aaataaacgt gccagacacg
      841 aatatttcat tgaagatgaa attgaagccg gcttagagct acagggctgg gaagtcaaag
      901 cattgcgtgc cggaaaaggc aatatcagcg atagctatgt catctttcgc cacggcgaag
      961 ccttcttatt cggggcaatg attacgcctt tgaatatggc atcaacccat attgtcagcg
     1021 acccgacccg cacccgcaaa cttctactga ataaacgtga gttagactca ctgttcggta
     1081 aagttaatcg tgaaggttat accattgttg ccacctcaat gtattggaaa aatgcgtggg
     1141 tgaaagtaaa aatcggctta gccaaaggga aaaaactgca cgataaacgt gaagatatta
     1201 aagaccgtga atggcaagtg gctaaacagc gtattatgaa aaacgccaat cgtggctaaa
     1261 tgaataatta ccctctcccc ttgtgggaga gggacagaaa aattgcgttc agcaattttt
     1321 cagggaaagg gggatttgta aaagttcaag gaaaaacaac gcttgccctc tctctgaaaa
     1381 atatttctga acgaaatatt tttcggtctc tctcccataa agggagagag tgaaacacaa
     1441 atttaaacta aggaacatac aatgatcgac caaaacctac ttcgtaccaa tttagaagac
     1501 gttgctacag ctcttaaaat caaacgtaat tttattttag atgtagagcg agtaaaaacc
     1561 cttgaagaac agcgtaaaac gctacaagtt aaaaccgaaa ccttacaagc agaacgcaac
     1621 actcgctcca aaaacatcgg tgcggcaaaa gctcgtggcg aagatatttc agctttatta
     1681 gccgaagtag attcaatggg caacgaatta gacacggcaa aagtagaatt ggataaagta
     1741 caggcagaaa tccgtgagtt gttgctttct gtgccaaact taccggcaga tgaagtacca
     1801 ctcggtaaag acgatagcga aaacttagaa gtattacgtt ggggcgaacc acgtcaattc
     1861 gactttgaag ttcaagatca cgttaccctt ggcgaaaact taaacggttt agattttgct
     1921 gccggtgtaa aattaaccgc cagccgtttt gtggtaatga aaggtaaact tgcccgctta
     1981 caccgtgcat tatctcaatt tatgttggat ttacacactg aacaacacgg ctatgtggaa
     2041 accaatgtgc catttttagt caatcacgac actctatacg gcacaggtca gctaccaaaa
     2101 tttggcgaag atttattcca tactcaacca ttaacagggc aagatccaaa cgaggtgcaa
     2161 cgcccattcg gtttgattcc aaccgctgaa gtgccagtaa cgaacttagt gcgagatgaa
     2221 atcattgatg aagacagctt accactgcgt tataccgccc acaccccttg tttccgtgca
     2281 gaagccggtt cttatgggcg tgatactcgt ggtttaattc gtatgcacca atttgaaaaa
     2341 gtggaaatgg tgcaaattgt cgcccctgaa aaatcaatgg aagccttaga agaattaacc
     2401 ggtcacgcag aaaaagtctt acagctttta ggcttgccat accgcaaagt gctactctgc
     2461 actggtgata tgggctttgg tgcagcaaaa acctacgact tagaagtttg gctaccggca
     2521 caaaacactt accgtgagat ttcttcttgc tcaaatatgt gggatttcca agcccgccga
     2581 atgtctgcac gttgtaaagc taaaggcgac aagaaaactc gcttggttca caccttaaac
     2641 ggctcaggtt tagcggttgg tcgcacactg gtcgctgtgt tagaaaacta ccaaaatgcc
     2701 gatggctcta ttactgtgcc tgaggtgtta agaccttata tgggtggttt ggaagtaatt
     2761 accgcttaag attaataaat gaaaccaatc tcagaaatgg ggttggtttt tttaataaat
     2821 cttatcccta atctttttca ggataattca taaaaatttc agtaactact cggcggtttt
     2881 gcactgtatc taaacgaata ggatttttca ttctccctaa acgaaatgca ataatggtga
     2941 cttttttcgg ttcatctatt ttatctaatt gatagaatac cattatttcc cgttgataaa
     3001 ccgctcgctt tctgaaacgt aaatccttgc gaaatgcgac acctgctttt ggataaaact
     3061 gtaaaccatt gatgatattc gtttgagtat gctccgaaaa taatccatag aaaataaact
     3121 ctaatagatt atttttaaaa tcaacactaa ccatctaact gctcccaagc agttaaatct
     3181 cctcgtgata aacgttcagc aatatcagca taaaattgtt tcggtacttc cctttttact
     3241 tggtattgag ctgattgttc ttctaataaa tgttcttcta tcatcttgat ttcttctgtt
     3301 gtccactctt catcttcttt atgtacaaca aaatcggtat ctacaatcac aatagacata
     3361 cctagctcct tcaagtactg gttatatatt ctgtattttg cctgttctaa attcagctgt
     3421 ctagcttttc tgttactcac aatttgcaaa tttttcatca aattccaccg cttgccattc
     3481 aaaaaaaggc gtttttgcgg tatcctatcg gcaatttttt cagttaaatt taaaggttaa
     3541 attttatgca acagcagtat aacccaagtg agattgaacc taaggttcag cgttattggg
     3601 cagaaaataa agtttttaaa gcagttaaag acgttaccaa agagaaatac tattgccttt
     3661 caatgttgcc ttatccgtca ggtaagctac atatggggca cgttcgtaac tacaccattg
     3721 gtgatgtagt gtctcgttat cagcgtatga tcggtaaaaa tgtattacag ccgatgggtt
     3781 gggacgcttt cggtttaccg gcggaaggtg ctgcggtgaa aaataatacc gcaccggcaa
     3841 aatggactta cgaaaacatc gaatatatga aaggtcagct taaaatgttg ggcttctctt
     3901 atgactggga tcgtgaagtc accacttgcc gtccggaata ctacaaatgg gagcaatggt
     3961 tcttcacaga actttataaa aaaggcttag tgtataaaaa aacctcaacc gtaaactggt
     4021 gtccgaatga tgaaactgtg cttgccaacg agcaagttca cgaaggttgt tgctggcgtt
     4081 gtgacacccc agtggaacag cgtgaaattc cacaatggtt tatcaaaatc actgactatg
     4141 ctgaagaatt actcaatcag ttagataatc tcccacagtg gccggatcaa gtaaaaacca
     4201 tgcaacgcaa ctggatcggt cgttccgaag gggtagaaat cacctttaaa attgccggtt
     4261 caaacgtaga attaccggtt tacactaccc gtccggatac cttcttcggc gtaagctatg
     4321 tggcgattgc tgcggctcac ccattagcag aattagctgc acaaaataac ccggcattgg
     4381 ctgaatttat ccgtgaagcg aaaaacacca aagtggcaga agcagaatta gccaccatgg
     4441 agaaaaaagg aatggcaacc ggcttgttcg ccattcaccc gttaacagga aaagaagtac
     4501 cggtttgggt tgctaacttt gtgttaatgc actacggtac aggtgcggta atggcggttc
     4561 cggctcacga tgagcgtgac tttgaatttg cacaaaaata cgatttgcaa attaatcagg
     4621 taattcaacc gcttgatggc tcagagtggg atttcagcaa agccgcttac accgaacacg
     4681 gtaaattaat caactctgcc gagtttgacg gcttggaatt tgatgtggct ttcactgcga
     4741 ttgccgataa attagaggca atgggtgtag gtaaacgcca agtgaatttc cgtctgcgtg
     4801 actggggtgt ttctcgtcaa cgttattggg gtgcaccaat cccaatgatg accacagaag
     4861 agggcgaagt ggttaccgtt ccattacaag atttaccggt gattctccct gaagatgtgg
     4921 taatgaacgg cgtgcaaagc ccaatcaaag ccgacccaga gtgggcgaaa accacttaca
     4981 acggcaaacc ggcattgcgt gaaaccgata ccttcgatac ctttatggag tcctcttggt
     5041 attatgcacg ttatacttgc ccacaatatc acgaaggaat gttagattca gacgaggcaa
     5101 actactggct accggtcgat caatatatcg gcggtattga acacgccaca atgcacttgc
     5161 tctacttccg tttcttccat aaattgttgc gtgatgcggg tattttaaat tcggacgaac
     5221 cggcgactaa actgttatgc caaggtatgg tgcttgccga tgcgttctac tacaccagcc
     5281 caactaacga gcgtatttgg gtcagcccga cacaagtcac cttagaacgt gatgagaaag
     5341 gtcgtatcat caaagcaacc gatccacaag ggcgtgagct ggttcacagc ggtatgacta
     5401 aaatgtcgaa atcaaagaac aacggtatcg atccgcaaga aatggtggaa aaatatggtg
     5461 ctgacacagt tcgcttgttt atgatgtttg cctcccctgc ggaaatgaca ttagaatggc
     5521 aagaatccgg cgttgaaggg gcaaaacgtt tcttaggtcg tgtttggaat ttagtttata
     5581 gctatgccca aaatccggca acgactgcat tagatgtgaa tgccttagac aaggatcaaa
     5641 aagaacttcg ccgtgatgta cacaaaacga ttgctaaggt gagtgatgat attggtcgtc
     5701 gtcaaacctt caatacagcg attgctgcgg tgatggaatt gatgaacaag ctcaccaaag
     5761 ccccacttga aaccgaacaa gataaagccg taatggcaga agctttaagt gcggtggtgc
     5821 gtatgcttta cccaatcacg ccacatatct gctttgagtt atggcaagtg ttaggtaatg
     5881 aacaaaccat cgattttgcc ccttgggtac aagccgatga atccgcaatg gtggaagatg
     5941 aaaaattagt ggtagtacaa gtcaacggaa aagtgcgtgg caaaatcact gtttcagcta
     6001 ctgctacgga agatgaagtt aaagctatcg ctaaagccga tccaaacgtt gctaaattct
     6061 tagatggtca gcagattgta aaagaaatct acgttccatt taaaatgttg agctttgcgg
     6121 ttaaggcgta acaaacacac tctcccttat atgggagaga gaccgataaa tatttcgtgc
     6181 agaaatattt atcagagaga gggtacaagc ggttattttc ttggaaaatt ttgcaaaaaa
     6241 tagccccctc tccctgcttt ttcttctaaa cgaagaaaaa cctgtccctc tcccacaagg
     6301 ggagagggga ataaacaagg aaatctcatt atgattaaaa aactctctct catcgctgtt
     6361 tttgctctta ccgcctgcgg ttggcacttt aaaaacaatg aggtattacc tgaatcgttc
     6421 agaacattaa cctttgaaag tgcagatcaa cacagcgaaa tgtctcgaat tttacgcaat
     6481 cagttacaac taagcgatgt aaaattagtg cctagcacgg ctaatgtggc aaaattacgt
     6541 ttggtttcaa cctcaacaga cagcaaagtg gtttctgtgt ttaaacaagc tcgtgaagca
     6601 gaaaaaatct taacgctaaa cgttgatgcg attgccgata ttccaaataa agggcaatac
     6661 cctttagaag tttcggttca tcgtactttc tttgatgact ctcgtgcagc tttggcaaag
     6721 tctgctgaaa aagagatgat tatgaaagat atgtatgaac aagcctctcg ccaattaatt
     6781 atcaaaatgg cgggcttaaa aaaagaactc tcaaaataat cattgtaggg gcgaaatatg
     6841 tttcgcccat tgtttatctg tatgcaaaaa atctttccgg aaacacttca attttcatta
     6901 aacaaaggac tacagccctt ttatctatta acagggaatg atctgctatt ggtgaatgaa
     6961 accaaagatg ccattattca caccgcccgt ctcaacggtt ttgatgaaaa aaaagaagtt
     7021 gaaatcaaaa acgatactaa ctgggaagaa cttttcgaag cagctcaatc aatgggattg
     7081 ttttttgcac gccaaattat ggtgctgaat tttccggatt cccccacagc gacacagttt
     7141 aaaaaactgg ctgagctttg tgcctttatt catagtgatt tgctctttat cctgcactta
     7201 cctaaatttt ccaaaacaat ggaaaaacag gcttggttca cgcaaattga gctaaatctc
     7261 gtgcaaatta actgccaaac accggaactt agcaaacttc cacaatgggt cagtcatcga
     7321 gcaaaagcga tgaatttgca aattgaaaat gaagcaaacc aactcctttg ttatagctac
     7381 gaaggcaatc tactggcgct taaacaggca ttacaactgc tacaactcaa tgcaactgat
     7441 ggaaaaatca cgctgacaaa agcccaagaa gtggttgaac actccgccca atttactcca
     7501 tttcaatgga ttgatgcatt atttgaagga aaaatccaaa gagctcaacg cattttgtac
     7561 catctgcaaa atgaagaagt acaagcggtc gttttattaa gaattgtgca aaaagagttg
     7621 atgattttac tcgaaatcac tcgcaaccca accgcagtcg tttccagcga acaatcactt
     7681 tttatcggta atttacgaac agaatttgac cgcttgaaaa tttggcaaaa ccgcagacct
     7741 ttttacaacc agatcactca acgactgact taccaaaaac tttacgccct aatccaacaa
     7801 ctggctgaat tagagcgtaa ggtgaaacaa gaatttagcg atgatatttg gcaagaatta
     7861 gagcgttttt ccgctcaatt tacctaacta atacttttct aaatcttcgc taaacaactc
     7921 cgcttcttca ctggcgatag agtgcttttc tgccgcccaa tcgcctaaat caataatttg
     7981 acaacgctcg ctacaaaacg ggcggtattt actttcttta ctccacacca cttctttttc
     8041 acaagtcggg cagtttacaa tagtttctgg cattcttttt ccttttttgc taatgctaag
     8101 tatttataat gtaaggcttg aacctgctct ttaattaaaa gcaagccctg ttcaaatggc
     8161 aagttatttt caatcacatc atcagcataa cttaatcttt cttcacggct gacttgggct
     8221 gccataatat ttttaatggt ttcaatttta ctgttatcac gtttggttgc tctttccagt
     8281 tggatttcag gagaaacatc aacaaccaat atacgatcac aatattcggt gagcttattt
     8341 tcaattaaaa gcggcacgac ccaaatcaca taacaagcgg tcgattcttg caattttttt
     8401 accatttctt ctcgaatggc ggggtgaagt aaattattga gccacgtttt ttcctcttca
     8461 ttgttaaaca caatttggcg aagtttagtg cgttctaatg ctttttcagc ggttaagatc
     8521 tcttcaccaa aatgctctac aatcttggct aaaagcggtg tacccggttc aacaacttgg
     8581 cgagccacca catcagcatc aattacctct accccaagag ctgaaaataa atcagacact
     8641 gtggttttgc cactgcctat tccaccggtt aagcctacaa cgtaagtcat aaaaattgat
     8701 tcctcaaaat aaaaacaaac caattctagt aattaatccc tctgctttca agcattagca
     8761 ccagcaacat cgctgtgcta ataaacggaa taaacgccaa ttttgctaat ttctgctttt
     8821 tcattagcca ataagccaag taataaccaa tccctagcag gctggcggtt aatatcaata
     8881 agagcatttt ttcgagccga aagagtgggg ataacgcaac caataacaac atatcgcccg
     8941 agccaaatgc ctccttttta aacataagct gtgaaaccaa gccaatcaac aggcaaaaag
     9001 caagggtaaa ggtaaaagtt tggtgttgga aatcggctaa actctcccat aacaccaaca
     9061 aaaatataag cacgaggtag cgaatatccg ttaggtaata gcacatatcc agcagtgata
     9121 aaaaacagag cagaataaaa atcgtgccga taatagggct ttccgagcag agcataatca
     9181 atggaaaaag gagaaaaaat agatttgccg atcggggttg tttcggttgt agcaccgatt
     9241 gagccaaaaa ctgttgctcg gttaagccaa tattcactaa tgaagttgtt tcttggtaaa
     9301 tttggcgatt gactcgaatg gcaaatcgag ggatctccgc tttgagccaa accgcaatga
     9361 agagggaaaa cagtattaac atcgctactc caccaaagcc cccatatcaa aaatcggtaa
     9421 atacagccca acaataatag tgccgacaat cacgcccatt atcaacatta gcatcggttc
     9481 taatagctga gacaaaatat caatttggta atctaatttt tgttggtaca tctcactaat
     9541 atgctcacac attttcgcca cattgccact tttctcccca acctcaagca tttgtgccat
     9601 ctcagcacca aacacattcg ggttgatccc ttgtgaaaat ttgtagcctt gttgtaacaa
     9661 attaagcata gtgccaattt cttgctgtaa aatcgggtca tcatttttct cggataaaaa
     9721 cgacctcaag gcaacatcaa gcggaatatg agcattcagc attaaggcaa tattttggct
     9781 gaaaaagata atgcgagatt gctcaataat tcggctaaac agtggcattt tagcccatag
     9841 agccattttc cactttgcga ctaacctgct cttttttgca aaaaacaggt aaaaaatgac
     9901 cgctagtagt aacgtgccaa gtaatactgt gccttgctca atcaagcatt cggaaagggt
     9961 aaataaaata tcggtaatga ggggtaaagt tttgtctttt gagccataaa gttgggcaaa
    10021 ctgcggtaca atcaaaacca atagcccgat agataaagcg agcgaaatca gcaacacaat
    10081 caccgggtaa aacaggattt tcttcacttt tttcgccaat ttttccaatt tcgctcggct
    10141 ttcagctaaa ttagtcagca taatgcccag ttttccgctt tgttcgccca ttttgattag
    10201 ctgaatttcc tgattggtca caaattcacc caatttctcc aacgattgtg aaaaagcata
    10261 gccactttca atatgctgaa tcagctcatt aagccataga taaaggcgga tatttcggca
    10321 gttttgcaac aacatagata atgcctgttt taacggcatg gcagaattaa ccaacaatgc
    10381 aagctgtgat agcaagctat tcacctcttc ttttttcggg tttgctgaaa gcacaaaatt
    10441 tcggctaatc cgaatatgct gataaccttg tgccagcaaa aggttttcca acatgtctcg
    10501 attcgttgcc aaccgcttgc cccgctgttt ttgcccaaat cggctctggg cttgccaatg
    10561 aaattcatag attttcgtca ttgcctaagc aatttctctt tttgtggttc aaaatgaata
    10621 tctgaggcgt tgtgttgcaa acagaactta aataaattct ctaaaatttg gataatcgga
    10681 tcgtttctat ccacttgttc cgaatgagcc aatgaatacg ccgtattctc ctcataaatc
    10741 tcactctgcc gactactctg ctcaggcgaa agggcattga gtaaaaactt caattcatcg
    10801 gaggaaatca aaacaggctc aatctgtttg tggtagataa acgcaaaaat ctcacaggca
    10861 ttgagatttt gcatatcatc aatccctagc caaagctgtt cttctgtttc ttgcagcgga
    10921 atggctaaat atcgcaataa aatctgcttt tcattgcaat ttttctgcca ctgctctgct
    10981 gaaatctcga tgaacctttg gctgtttaaa tccgttaccg aatactccat tttgatttcc
    11041 tcacctcaaa ttagccgttt ggtgtaacag ttgtgctaca gaaattagct ggaaataggc
    11101 tcgtatcatt gccactacaa cttgccgtcc aactaatcgt attatttgag aacgacggtg
    11161 ttaaggtata gccataacca ttcagagagc ctttgccggt taccgtaatc acgccttttg
    11221 ttaccgcaat tgagtttagg tatttagtgg tattactact ggttttattc gcctgaatcc
    11281 cattcgtgcc accggagcag ttatccaacc cgccactgtt gtaaatacag acttcaacgt
    11341 ctgatttata cgaagcagat gcttgtaata actccgataa cgccgccttt tgggtgtatg
    11401 agttatagga agggatcgca atagtggcaa gaatggcaat aatcgcaatc acgatcatca
    11461 actcaatgag ggtaaatgcc cgatgcagtt ggcgaatgcc aagcggtcta aaatgtacaa
    11521 ttttttgcat ataaattcct tataaattgc accaacaaat tgtggcgaat caagtgtgca
    11581 aattttttgc ctgctttgcg accggcaaat tttaattttt cgacgcagat cgaaaaaata
    11641 aaatttttat ctgtttatcc atacagtttt ttgttagaat ttgccaaatt tactcaatta
    11701 ggaatcaaga atggcaaaag cacctaaaac cgcttatgtt tgtaacgatt gcggggctga
    11761 atattcccgt tggatggggc aatgtaagga atgtaaggct tggaatacca tcagtgaagt
    11821 gcggttgatt tccagcaaag aagcggcgaa atctgaccgc tttagcggct atgccggtga
    11881 aacgtcaggc aaagtacaaa cgctgtctga catcagcttg caggaagtgc ctcgctttag
    11941 cagtggcttt aacgagctgg atcgtgtact cggtggcggc gtagtgccgg ggtcagcaat
    12001 tctgatcggc ggtcacccgg gggcggggaa aagtacgtta ttactgcaag taatgtgcgg
    12061 tttagcccaa catctgccaa cgctgtatgt caccggtgaa gagtcgttac aacaagttgc
    12121 aatgcgggca aatcacttag gcttaccaac ggcaaatctg aaaatgttgt ctgaaacctc
    12181 tgtcgagcat atttgcaata ttgcagatca agaaaagccc aaaattatgg tgattgactc
    12241 gattcaggtg atgcacttgt cggatattca gtcctcaccc ggcagtgttt cacaagtgcg
    12301 tgaatgtgca tctttcctta cccgctacgc caaaacccgc caagtggcga ttattatggt
    12361 tgggcacgtc actaaagatg gcacgcttgc cggcccgaaa gtgttggaac acgccatcga
    12421 tgcttccttg ctgttagaag gcgaatccga ttcccgtttc cgtactttgc gtagccagaa
    12481 aaatcgtttt ggtgccgtca atgaattggg cgtatttgcg atgaccgaac aagggctaaa
    12541 agaggttaaa aacccatctg cgattttttt aagccgtagc gaagagcaaa cgccgggcag
    12601 ttcggtgatg gtgttatggg aaggaacacg cccattgttg gttgaaattc aagccttagt
    12661 cgatcactca atgctggcaa accctcgccg tgtggcggtt ggcttagatc ataaccgttt
    12721 atcgctatta cttgcggtgc tacaccgaca cggtggcttg cagatgtcgg atcaagatgt
    12781 gtttgtaaat gtggtcggtg gggtgaaagt cacggaaacc agtgccgatt tagccttaat
    12841 tttggcgtta atttccagct tccgtaaccg tccattgccg caagatttgg tgatttttgg
    12901 ggaagtcggc ttagcagggg aaatccgccc ggttaccagt gggcaagagc ggatcagcga
    12961 agccgcaaaa cacggcttta aacgagcgat aattcctcac ggcaatgtcc cgaaaaaggc
    13021 aattaaagat atgcaggtgt tcaccgtgaa aaaactcagt gatgcgttag atattctgta
    13081 taatctctaa aatcaagaac cgcttgtaag tctgtcttac aagcggtctg ttttaggtaa
    13141 aaatttacga atgtgcggca gttggtctat tgcctttgga aatatagtat aaattaatac
    13201 acaccaccaa cgcatttaag ccggtgaccg gaatcgagcc aatcagcaaa ccataaacaa
    13261 cgaaacaggc acaacccagc gaattcacca cccgcagttt aatcacatct tttaataaaa
    13321 aagaacaggc aactaaaatc atcgccacat agccgagtat ttcaacatag tccatttaga
    13381 acctcctcaa ataaaataaa ctgccgatat tttaaaggct gtttttttat ttgtatctag
    13441 ctctaaaaat agcaaaggtt tgcgttcaca tttttacttt taaccgctta gttattaaac
    13501 agattttcgt tctaaacaca taaaacggca acggaaaggg ttattttcat caatttctga
    13561 ccacttttct tctactaacg cccaattttg ttcatcaaat tcaaagaacg tatccccttc
    13621 aatgtctgct tgaatctcag ttaaataaag tctttctgct agtggtaagg cttgcttaaa
    13681 cagttccccc ccaccaataa tcattatttc agctgtattt gcaaaatttt tcgctaattc
    13741 aaccgcttgt tcgagcgatt gtaccgcata agccccttcc accgtaaaac ctgaacggga
    13801 aagaataata ttagggcgtt ttggcaataa cctgccgata gattcatagg ttttccgccc
    13861 cataatcacc ggtttgccga gcgtgttttg gcgaaaccag gctaaatcta ccggcaaatg
    13921 ccacggcatt tggttatctt tgccaatcac cttgttgatt gttcgggcaa caataatgct
    13981 gattttcatt ttttctcctg ttatgcaaat tggtttgatt ttatatcaaa ttaagcgtga
    14041 ttttacaccc taaaagtgat acttttggca acattatttt tagttacaag tgaacagatt
    14101 atgtcaaaaa ctatcgtgat aaaatttggc accagcactc tcacacacgg cactaaaagt
    14161 ttaagccgtc cttatatgtt agagctggta aagctcaatt acaccaacag catcgtgtga
    14221 ttgtggtgac atccggagct gccgctgccg gtcgggacta tttaggacac cctgaactcc
    14281 ctaaaacctt agcctctaag caaatgttag cagcggtcgg gcaaagtcag ctcattcgag
    14341 tgtgggaaaa tttattcgat atttataata tccatatcgg gcagatgctc ttaacccgag
    14401 ccgatctgga cgatcgtgaa cgtttcctca atgcccgtga tacccttgat gccctgcttg
    14461 cacaaaaaat cattccggtg attaatgaaa acgatgccgt tgctaccgaa gaatttaaag
    14521 taggcgataa cgataattta tcggctttag ttgcgatttt ggctcaagca gatcagctct
    14581 atttattaac cgaccaagaa ggcttattca gtgccgatcc tcgctcaaac cctgatgcta
    14641 aattgctctc ggtggtggaa aaaatcacgc ctgaaatccg ccaaattgcc ggtggtagtt
    14701 caaccggttt aggcacgggc ggaatgagta ccaaaattac tgctgctgat attgctaccc
    14761 gctccggtgt ggaaaccatc atcgcctccg gttctcgccc aaatgtgtta gttgatttag
    14821 caaacgggca aaacatcggc agtaaatttt tagtccaatc tgaccgcttg gaaggcagaa
    14881 aacgctggtt atttgctgct ccgcaagtgg gtgaaattgt ggtagatttc ggggcggaac
    14941 aagccttgct tcaacataaa tcattactgc cggtgggagt ttctgccatc aaaggcgaat
    15001 ttactcgagg tgaagtaatc aaaattttca gccaagacgg caaagcctta gcactcggca
    15061 ttgcccgtta tagcagtgag gcattgctgc gaattaaagg taagaaatca aaagaaattg
    15121 aatcgctcct tggttatgaa tttggttctg ttgcagtgca tagtgacgaa atggtggtgt
    15181 attaatggaa ttgggaattg atgttttagc aatcttgttt gccgttgcga cccttgccgg
    15241 ctttatcgat gccatcgctg gcggcggtgg cttactcact attcctgcat taatggcagc
    15301 agggcttcct ccggcaatgg cacttggcac gaataaatta caggcgtgtg gcggatcact
    15361 ctcttcctca ctctatttta ttcgcaaaaa agctgttaat ttaaaacaaa tttggttgct
    15421 aattctatgc acttttttag gctctgccgc cggtactatt tttgtgcaaa tgatcaatgt
    15481 cgatttctta aaaacattgt tgcctttctt aattctgatt atcggcatct attttttggt
    15541 cagccctaaa attggcgatg aagatcgtaa acaacgcatt agctttaccc tatttgcctt
    15601 taccgccgct gtcgctctcg gtttttatga tggaatgttc ggaccggcaa ccggctcttt
    15661 tatgactctg gcatttattt tgctgctcgg cttcaacctc tctaaagccg tagcacacgc
    15721 caaagtgatt aattttacct ccaactttgc ctcattaatt ttctttacgc ttggtggtgc
    15781 ggtaatgtgg aaaatcggct taattatgat ggtcgggcaa tttattggcg gcacactagg
    15841 tgcgaaaatg gtgatgacaa aaggcaaaaa attaatccgt ccgatgctag tgactatgtc
    15901 ttttatgatg gtcggcaaaa tgctctacga gcaaggaatt tttaattaac aatgaataaa
    15961 gcaaaacgta ttgagatttt aacccgttta cgcaatgaaa atccaaaacc gacaactgaa
    16021 ctcaattaca gtaatccgtt tgaattatta attgccgtga ttctatccgc ccaagcgacc
    16081 gataaaggcg taaataaagc caccgataag ctcttccctg tcgccaacac gccacaagcg
    16141 attttagatt taggcgtaga tgggctaaaa gagtacatca aaactatcgg cttatttaac
    16201 agcaaggcag aaaatattat caagacctgc cgagatctga tcgaaaaaca taacggcgaa
    16261 gtgcctgaag acagagatgc cctcgaagcc cttgccggtg ttggcagaaa aaccgccaat
    16321 gtggtgatga ataccgcatt cggacaccct acgattgcag tcgataccca tattttcagg
    16381 gtgtcgaacc gcacgaactt cgctcccggc aaaaatgtag ttcaggtaga agaaaaactg
    16441 ctcaaagttg tgccggacga atttaaagtc gatgttcacc attggttgat tttacacgga
    16501 cgctacactt gcattgcccg taagcctcgt tgtggttctt gtattattga agatttatgt
    16561 gagtttaaag agaagacgga ataacattat ctggtggtat ttaatgaata actcccctct
    16621 ttagaaaagt aggggctggg ggagatttga tactatttca acatttcgta tgagcgtata
    16681 gaaattctgc caaatcttcc ctatcccctc tttgctaaag aggggaacta gatcgagcgt
    16741 aaaatataac aagcggtcat ttttttgaga ttttttgcaa atggatattt atttagtcgg
    16801 tggagcagtg cgggatcaac ttcttgggct gccagtgaaa gatagagatt ttttagtggt
    16861 tggcgcaact gccgaacaac ttttagccca aggatttcaa caagttgggg cagattttcc
    16921 ggtgttttta caccctgaaa ccaaagaaga atatgccctt gctcgccaag aacgcaagaa
    16981 cggcaatggt tacaacggct ttatttgcga tttctcccca aacgtcacgc ttgagcaaga
    17041 tttgatccgc cgagatttaa ccattaacgc catcgcccaa gatgaaaaca gcacactttt
    17101 tgatccttat ggcggtgtgc aagatttaga aaatcggcta ctccgccacg tttctcctgc
    17161 attcagcgaa gatccgctac gggtgctacg ggttgcccgc tttgccgccc gttttcattc
    17221 atttggtttt accattgctc ctgaaaccct gaaattaatg cgagagatgg tacaaagcgg
    17281 tgaattgaaa catttaaccg ctgaacgtgt gtggttggaa acacagaaag cctttgaaac
    17341 cgataatccg cacgtttatt ttgacatttt acgcttaatt ggggcattaa aagtgctatt
    17401 ccctgaactg gatcgtctgt ttggcgtacc acaaccacct caacaccacc ctgaaattga
    17461 ctccggcaaa cacactctaa tggtgctaca acaggcaaaa agacttgcaa aaaaagcgga
    17521 aaatccgacc gctttactct ttgcagccct ttgccacgac ttaggcaaag gcttaacgcc
    17581 tgctgatatt ttgcctcatc actacggaca cgaagtcaaa ggcattcaac caacccgaga
    17641 gttagccaat cggttaaaaa tcccaactga gattaaagat tttgcccttt tagtgaccga
    17701 ataccacacg cattgccata aaatggcgga acttcgccct gaaacggtaa taaaactgtt
    17761 taacagccta gatgtgtggc gtaaaccaaa ccgctttttt gatttcctgt tcgcctgtga
    17821 agcggatgct agagggcgat taggttttga acagcggaat tacccccaac ctgaattggc
    17881 gaaaaaatat taccaagccg caatcgaaat tgatgtgcag caagttattc aagacggttt
    17941 tgaaaaacaa gcaattcggg aagagctgaa taaacgcaga gtgtatgcgg taagaagcat
    18001 caagctagat agcgacctaa taaaccatta ggttatccgc cactttctca aaatcaattc
    18061 ccaaagttca agttggttaa atgtatggat tctttaaaag gtggcgttat tttagtgaat
    18121 ttataatgtt cctatgctct tgattgttgt agccacaatt tcagggtaaa gatcagcaat
    18181 aacccaatgc cgaaattggc aatagtgaag ccggctaacc caataaaaga taaaggttca
    18241 aattgataaa attcaatcgc acctcttgcc attgcagcta aaccaaatga aaatgcccag
    18301 aaacccatcg agaagccatt ttcagctatc catttgaggt ttcgtaaaat aaaacagaat
    18361 tgtaagaatc catatcccca taacattttt gccaacaagt ctaattctcc acccatagaa
    18421 aaataggcag aagcgcccac aaatgccgga gcaagaacaa ttcctaaaga tggtctagca
    18481 atcggaaaaa gcggactaag ccgaattctt tgtaacatag tgggttcata tactaaccag
    18541 gaaattatgc caatgcctaa aaataaagat gcaatttcac tgtagccaat taagcttaat
    18601 gaacttgcca tagtgaagct ccctgcaatt ggcggtaggt aatgtaccgg gtgtagcgtt
    18661 tccggcaaaa attgtgtgcc tttccataat ccaccaataa taaaaaccaa gaaaattaaa
    18721 tgcacaatga cgcctaaaaa aatcaatagt tcgcctaaat aaaaatccca tacatagagc
    18781 acatcaccgc ttatcatggt tgtcattgtc actaaggaaa ataaacaaca ttgcactggg
    18841 tgcataaatt ctgctttaat ctgctcaaaa caaaaaaaca cacgatacac ataacagcct
    18901 aataaggcta cccaaagtat gactgacgtt ccagcaatga tattaccaat tgttgtagca
    18961 taaggagtga taggcgttgc atttaaccag gcaaggccta acgcccccag ccctaatggc
    19021 attgcaaaaa agcctgtagt tattggaaaa ggtttagatt cactcataaa tttatcctca
    19081 tattgaaata atgcataact gtattcggct ttataacagt catatgtaaa aaattttatt
    19141 tttctaaccg cttgtaataa gaaaaaccta aagcacttgc tttaggttcc tactactatt
    19201 catactcttc tagccagata gttaaaatcg cttcaagaat atgttcattt gatgcttccg
    19261 gatcatcatc gaaatcttcc atttcacaaa tccatttatg catatctgta aaacgaaccg
    19321 tggtcgggtc taaatccggg ttcatatcat acagattttc agcgatcatt cgggtatctg
    19381 tccatttcat tagtgcgctg cctcatttgc gtgatttaaa ttatattttg gaatttcaac
    19441 aaccaaatct tcttcaccaa caatacattg gcaacttaaa cggctgtcta tttccaatcc
    19501 ccaagcttta tccagcatat cttcttcttg atctgaagta tcatttaacg aatcaaaacc
    19561 ctcacgaatt accacgtggc aagtggtaca agcacaagaa cagtcgcaag cgtgatgaat
    19621 ttcaacgcct gcttcgtgtg ctacttctaa taaattatct ccggctttag cttcaacaac
    19681 cataccttcc gggcaaaatt cttcgtgtgg aagaaaaaca atttttggca ttttaaagtt
    19741 tccttattac taatcccatt caatattatc cagatgttcg ccgatgaagt ttaaaatctc
    19801 ttcctcattt tcaaccagat aaacaataat cttctttaat tcccttgctt tctctttact
    19861 tttctcggaa agcggatagg taacataata acatcctacg tccggatctt cttctaataa
    19921 ctctaatagg cttggacgat aaatactaag ataagcccgt aaaaatgcag cccagttata
    19981 accgttcata taggcaacat catattcagt attaatccgc tcgcccaact caaaaatgcg
    20041 gttatcctct aaatcgaatt caaccgcaac ggttctgaat tgttctgaaa tctcggtttt
    20101 tacatagtta gacatactgc ctccttatgc taaatcgtcc atttttttac cggctaatgc
    20161 tttttgaatt gataaattca tacgccgtgc tgcaaattct tgcgtagcta aatccacctc
    20221 tttgatacct tgctgaattg caaagcgatc agtaccttct tttaattcga ttaaacgggc
    20281 taattgtgct tcaatcgctt ggaactcctc cacactcaac actgcagagc catcttcttt
    20341 caatgccgtt accacgctgt caatcactcg gtcggcttct actcgctgtt caactaactg
    20401 gcgggcttcc atatcttctt tggcatttgc cattgaggat ttaatcatct gcgtaacttc
    20461 ttcatcggtt aagccataag acggtttgat ttgaattgaa gcctgcactt tggtcgattt
    20521 ttccattgca gtcacgttta ataaaccgtc tgcatcaact tggtaagtta cccgaacctg
    20581 tgcaacccct gctgccattg ccggaatgcc acgcaaagtg attttaccga gagagcgaca
    20641 atcttcgact aattcacgct caccttgtaa aacgtggatt gtcatcgccg tttgaccgtc
    20701 tttaccggta gtaaactctt gagctcgagc tactgggata gtagtgttgc gtggaataat
    20761 tttctccacc aaaccaccca tcgtttcaat accaagcgaa agtggcacaa catcaagcaa
    20821 caacatatcg gaatccggtt tgtttccaac taaaatatcc gcctgcactg ccgcaccaat
    20881 ggcaacaact ttatccgggt cgatagaggt taatggcgtt ttaccgaaaa actcgccgac
    20941 ttgttcacgc acaaacggta cacgggtcga accgcctacc attaccactt cacgaacctc
    21001 ttctgcttca actccggcat ctttcaaggc tcggcgacaa gtcatcagcg agcgttttac
    21061 aagcggttga attagctcat taaattgcga acggcttact acgcctgtcc aatttgcaaa
    21121 tttcacttca aattcaaccg cttgcgaaag tgcgactttg gtttgagttg ccaaagttaa
    21181 taattcacgc tgctcgcttg ccgtttgagg tttgtaattt gcctgttcag caatccattc
    21241 cgctaatagg tggtcgaaat catcgccacc gagtgcggta tcacctgcgg ttgctaatac
    21301 ttcaaacaca cctttgcgta aacgcaaaat agataaatcg aaagtaccgc cacctaaatc
    21361 gtaaacggca atcacacctt cttgtccgct ttctaaacca taagcaatcg ctgctgccgt
    21421 tggttcattg agcaaacgta atacatttaa acccgcaaga cgtgcggcat ctttggtact
    21481 ttggcgttgt gcgtcatcaa aataagccgg tacggtaatt accacgcctg aaagctcacc
    21541 ggctaaacgc ttttcggcaa attgtgccaa gtggcttaaa atatccgccg aaacttcaat
    21601 cgggctttta ttaccttgcg ctgtttggat taaaggtaaa ccgttttcgc tcgcgacaaa
    21661 ttgataaggt aaattttgat aacgttgctg aacatctgcc agagaacgcc caatgagacg
    21721 tttagctgaa atgacggtat ttttcgggtc aagtgcagct ttggcaaagg cttcaatccc
    21781 aactgttttt tctgtttccg cataatgcac tactgacggc actaatgctc tttcttgttc
    21841 atcaagcaat acctgagtct gcccgctacg cacagttgcc actaatgaat tggttgtacc
    21901 tagatcaatt cctaccgcta atttatgttg atgtggtgca gcggtttgac cgggttcaga
    21961 aatttgtaat aatgccattt atttatctct ttatctttct aacttagt
//
LOCUS       DANLXB010000010        21999 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLXB010000010 DANLXB010000000
VERSION     DANLXB010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21999
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(1..493)
                     /locus_tag="PXD41_000261"
                     /pseudo
     CDS             complement(1..493)
                     /locus_tag="PXD41_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251101.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(746..1576)
                     /gene="fghA"
                     /locus_tag="PXD41_000262"
     CDS             complement(746..1576)
                     /gene="fghA"
                     /locus_tag="PXD41_000262"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL6287829.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(1656..2714)
                     /locus_tag="PXD41_000263"
     CDS             complement(1656..2714)
                     /locus_tag="PXD41_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL6287830.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(2901..3836)
                     /locus_tag="PXD41_000264"
     CDS             complement(2901..3836)
                     /locus_tag="PXD41_000264"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL6287831.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(4116..4427)
                     /locus_tag="PXD41_000265"
     CDS             complement(4116..4427)
                     /locus_tag="PXD41_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6287832.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(4434..4826)
                     /locus_tag="PXD41_000266"
     CDS             complement(4434..4826)
                     /locus_tag="PXD41_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6287833.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            4958..5518
                     /locus_tag="PXD41_000267"
     CDS             4958..5518
                     /locus_tag="PXD41_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL6287834.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(5584..6573)
                     /locus_tag="PXD41_000268"
     CDS             complement(5584..6573)
                     /locus_tag="PXD41_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL6287835.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(6787..7704)
                     /locus_tag="PXD41_000269"
     CDS             complement(6787..7704)
                     /locus_tag="PXD41_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6287836.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(7840..8499)
                     /locus_tag="PXD41_000270"
     CDS             complement(7840..8499)
                     /locus_tag="PXD41_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6287837.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(8684..9748)
                     /locus_tag="PXD41_000271"
     CDS             complement(8684..9748)
                     /locus_tag="PXD41_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL6287838.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            9839..10747
                     /locus_tag="PXD41_000272"
     CDS             9839..10747
                     /locus_tag="PXD41_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6287839.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(10817..11368)
                     /locus_tag="PXD41_000273"
     CDS             complement(10817..11368)
                     /locus_tag="PXD41_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6287840.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
     gene            11560..12921
                     /locus_tag="PXD41_000274"
     CDS             11560..12921
                     /locus_tag="PXD41_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL6287841.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALK
                     TLQ"
     gene            complement(12969..13466)
                     /gene="rraA"
                     /locus_tag="PXD41_000275"
     CDS             complement(12969..13466)
                     /gene="rraA"
                     /locus_tag="PXD41_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL6287842.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(13564..14466)
                     /locus_tag="PXD41_000276"
     CDS             complement(13564..14466)
                     /locus_tag="PXD41_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL6287843.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            14575..15537
                     /gene="rluC"
                     /locus_tag="PXD41_000277"
     CDS             14575..15537
                     /gene="rluC"
                     /locus_tag="PXD41_000277"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL6287844.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            15646..16503
                     /gene="folP"
                     /locus_tag="PXD41_000278"
     CDS             15646..16503
                     /gene="folP"
                     /locus_tag="PXD41_000278"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL6287845.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            16503..16850
                     /locus_tag="PXD41_000279"
     CDS             16503..16850
                     /locus_tag="PXD41_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL6287846.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            16980..18128
                     /gene="dapE"
                     /locus_tag="PXD41_000280"
     CDS             16980..18128
                     /gene="dapE"
                     /locus_tag="PXD41_000280"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL6287847.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            18239..19573
                     /locus_tag="PXD41_000281"
     CDS             18239..19573
                     /locus_tag="PXD41_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL6287848.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            19680..20189
                     /locus_tag="PXD41_000282"
     CDS             19680..20189
                     /locus_tag="PXD41_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL6287849.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            20218..20439
                     /locus_tag="PXD41_000283"
     CDS             20218..20439
                     /locus_tag="PXD41_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6287850.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(20504..21982)
                     /locus_tag="PXD41_000284"
     CDS             complement(20504..21982)
                     /locus_tag="PXD41_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL6287851.1"
                     /translation="MNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLANFVREVIPER
                     RMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGERGAADAERDIR
                     GFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRSATNNWDFWTL
                     LPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHFHTQQGIKNLT
                     NEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPYHPFDLTKVWP
                     KSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQARLFNYADAQ
                     RYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGKWQEQAQYAEP
                     PLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMGDALDFIKYRH
                     IRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
BASE COUNT         6268 a         4636 c         4823 g         6272 t
ORIGIN      
        1 tagaaaaaac cgaagcgttc ttcgcttaac attttttgaa tatctaagtg gaatacgcgg
       61 tggccccaat gtttgtgaaa taataatact gatagggtag ttgtccctag atagaggtag
      121 ttgtccctag atagagtagg tgtaaataca ttggcacttt gccaataaac agatagaaac
      181 tgatcattac tggcaagcta aaaatagtaa caagaacact cacccgtagc cagccaaggt
      241 atttaaagta atgcagctta aaaactttat taactaaagc gtatcctatc aaataaaaaa
      301 gaaagatagt taaaaatgtg ccaaaaacgt aggctagtgc gcgagctata ccggcattac
      361 caacctcaac atgccaccac gggtagccat gaaaagcagc aataccccaa gcataacagt
      421 aagcggtaga aaaagagatt aaagtaaaga aagcgagagt aagagaagag ttgatgaatt
      481 tctgattagt cataacagta aatagattgc acctacttag ttaaagatga aacacaagaa
      541 agcagactga gtttagcttc cacccaactc ctttgtttag aggagaactt tattaaagca
      601 cgacttttgt tgtatttcaa acctttgttt ttatacaaaa caaccgtgtt gtaaaaaatg
      661 atcgtaaact gaccgcttgt aatgcactct gaatatatcg aaacatgata aaaatgataa
      721 agcatgtttc gataatttac tgtctttagt cttttaaatg ttttgcatga aaggctatat
      781 gttcaccgat aaagctacta atgaaatagt agctgtgatc gtaaccatca cgtaaattga
      841 attggtaggg tattccaagt ctatctgcgg tttcacagaa aatttccggc tttaactgat
      901 cgctcaaaaa gctgtcttgg ctgccttgat cgattagaat tggcaagctt gggcgatatt
      961 tttccagcaa tgccacgcta tcatacgcct tccaagcggt ctgatcttcg cctaaatatg
     1021 ctaaaaatgc tttttgcccc caaggaactt gggttggggc gacaatcggt gcaaatgccg
     1081 atacactttg atattgcccc ggatttttaa atgcaatggt taaggcacca tgtccgccca
     1141 ttgaatgccc aaaaattgat tgtttaccgt tagtcgggaa atgagcatta atcaatgttg
     1201 gcagttcgct gacaatgtaa tcatacattt ggtaatgtgt tgtccattcg ccttgcgtag
     1261 catttaggta aaatccggca ccctgaccta aatcataagc ctcatcatta gcgacattca
     1321 cacccctagg gctggtatcc ggtgcgacca caatcagatg atgttcgtcg gcataacgtt
     1381 gaaagccaga tttagtgatg aagttctgct cggtacaggt taaaccagaa agccaatata
     1441 gtacgggtag cttttgtgtt ttagcagatt gcggcagata aatagcaaat ttcatttcac
     1501 agtttaagct ggctgagaaa tgttgccaaa cctgttgttc accgctaaaa cagcggtagt
     1561 tttcaaattg ttgcataata ttccttacaa gcggtttaat tccgctgatt ttttgcaaaa
     1621 ataaaggcgg aactcaccgc ctttatattg taatatcaac ctttcaaact tcccatatca
     1681 atcacaaacc gatatttcac gtctgatttc agcattcgtt cataagcatc attgatgttt
     1741 tgcatatcaa tcatttccac atccggcaca atgttgtgtt cggcgcagaa gtcgagcatt
     1801 tcttgagttt cctgaatgcc gccgatgaca gaggcggaaa tagagcggcg gcctaaaatc
     1861 atcggtacgg tgttgatggt ttgctccaac tcaccgacca agcccaccag caccaatgtg
     1921 ccgtccaacg ctaaggttgg gatataaggt ttcaagtcgt gggtataagg cacggtatcg
     1981 atgattaaat caaaggtatt tgcaacgtct gccatttgct tttcatcggt agaaagcacc
     2041 acacggcttg cgcccaaacg gtaagcatca tcggctttac ccagtgagcg agtaaaaagc
     2101 gtaacttccg ctcccattgc tttggcaagt ttaaccgcca tatgccccag tccgccaagc
     2161 cccacaacag cgacttttga gccagctttg acattccaat gacgcagggg cgaataggtg
     2221 gtaatgcctg cacacaaaag aggggcaacc gctttggtgt ccaagttttc agagactttt
     2281 aatacaaaat cttcactcac caccacgcat gtgctgtaac cgccttgtgt tggtgtgccg
     2341 tcaaagcggt caataccgcc ataagtgccg atgttgccca cttcgcagta ctgctccaaa
     2401 ccgtgctggc aaggactgca ttcacggcag gaatccacca tacaaccgac accgaccaaa
     2461 tcgccgattt ggaatttttt ggcgttttta ccgactttga taatacgacc gatgatttcg
     2521 tgccctggta caagcggata gctttgcgtc cagccccaat cattgcgagc catatgcaag
     2581 tctgaatggc acacgccaca gtacaaaata tcaatcaaaa catcgtcttc aagcaattca
     2641 cggcgttcaa aactgtgtgg ggcaagtggt gtggttgccg aaaaagtggc gtaggatttg
     2701 atagggtaag ccatttttgg ggtttaaatg gctgaaatgg caattactat agtgccgatg
     2761 atttattatt gaaaatcaag atttttgata aatcggtatc agttaaaatg ataattgggg
     2821 gttttcagac tgactgaaaa attattttgc ccattttaaa aacaaaaaca ccgccctcat
     2881 cacaaaagcg gtgtttttca tcaaaattgt gtcaaagcat actctgccaa ttctgtaagc
     2941 acttcatcag caggacgctg agtgggtttt aaattgagtg ccaaatgttt cacgcctttt
     3001 tcttgttctt ttgcccaaaa gtctgccaag ccttttgcac caccacgcag ataaatgttg
     3061 ttaaataact gtgctttggc gtttttgtcg tccaaaactt ccacaaattg agcatagcca
     3121 aatgctgtgg gggtgtcttt ttggcgtaaa tcggcaaggg tgttgatgat gtttgcggtg
     3181 tcggcaggat tcacaccgtg ccaaatccac gcatcaggta cattagcaag ccagtccatt
     3241 tcttgccttg ctcgtccaat cgccacaatg ggcaagcggt gtttgggttt ggggagcaaa
     3301 tccaaattgt ctgttaaatc ggcataatgt ttgcctttga aatggggaaa atcctgctcg
     3361 gttaaggtgt taatcaaatc aatgctttca cgaaaacgct cgctacgaga ggcaaaatcc
     3421 gccccaaatg cagggtattc cacaggtcta tcgccagagg ataagcccaa taaaaaccgt
     3481 ccatgactca aactatccac acttgtcgcc attttggcaa tgtgaatggg actacgcaaa
     3541 ggggcaatca gccctgccgt gccaagggcg atgttttggg tgtgggcgga caaaaaacca
     3601 agtgtaacca tcgggtcaag cccttgcccc acatcgccaa aatgagggtc ataaaacggc
     3661 acatctcgta cccacaatgc tgaaaagccc aagttttcag ccagccgtgc attgtcggca
     3721 atggtggtca aattgtctgg aatgtgattt tgatagccca taaagggggc aattaagccc
     3781 agtgttaatt gattttgccc aaaaacttgg gagaaaatgg gggaaagcgt gttcattttg
     3841 gcgtacctgt cttatttaag ataaggtatt ttaagggctt ttgagtttgc ttaaaatggg
     3901 ataaattgag aaagtgtttt gctaaattgg cataaataga cgctttcaag ctgactgaaa
     3961 atttgcaaaa tttttaataa aaatgaccgc ttgcctttca acaagcggtc attccccttt
     4021 aattttttac caccgtaaac accttatttt tcagccgata ttcacttttt tcatcgtgag
     4081 ccagttgcac aatggttggc ttgcgtttac acaattcacg cattgcacac gccgtcaatg
     4141 ttgccagcaa gcatatcttg ttcagagtaa gaggcatcgc cgccaatcaa aatataatgc
     4201 tcgcccatat ccaccaccac cgccaaatgc cccagcgtat gtcctgcggt tggcacaagg
     4261 cggattttgc cgtctttggt gagtttatga ctgctctcaa aactttcaaa cgccccatca
     4321 ttaaaataga tgccatcagg cttaaaccaa tcaggatagt gcattgttaa ataaccgttc
     4381 atcaccgcat tgggggcgtt gattgcctgt ttttcagtct cactcatcac aaatcagctg
     4441 tttgggaaat tgggcaatcc gcctgcgtgg tcgccgtgca tatgggtcat taccaccgtg
     4501 tcaatgcgta aagggtcaaa gccgtttgcc tttaaaattt cgcccacttc ttcgtgtttt
     4561 ttgaccccac gccgttcgca aaactgcata aacgggtgcc accacggctg atagcccttg
     4621 tcgttggcac gactgctttc gcccgtatcc accaaaatca aaccgtcatc gtgttcaatc
     4681 agccagcaac caatcggcag tttaggcgac cattttttat cggtcagcac atcaagcaca
     4741 cgggcaggac gggcaaaaaa gcgtgccact tgatgatgaa ttttgatttg tacccaacct
     4801 gttgtcagac aatgcacttt aatcattttt gtgttctcat taaaaaatcg tgggcatatt
     4861 gtagaaagtg cggtaacttt tcacaaacat taaaaagttc gtatttggct ggatatgcag
     4921 ataaaattac aaaaatgtat gcttattttg aaaaaagatg aacgatttaa gagtaatcaa
     4981 aacccatcta gcaatccaaa acgctttgat tgaattatta gatgaaaagc tgtttgaaaa
     5041 agtgcaagtc caagaaatca ttgaaaaagc cttgattaac cgcaccactt tttaccgtta
     5101 ttattcgggc gaaagtgatt tggtcggcaa attgataaaa gaggtgaagg cggaatatca
     5161 agacctgctc aaaaagcgtt ttgaaagcgg taatttgctg cgatttatgc aaaccattgg
     5221 caaccgctta ttggaaaaaa gacggctgat tttggcactt tggcaaatca aaacccctcg
     5281 ccatcatttg tatgacgata tgcacatgct gttaaaaaac gcctttatcg cccacgccaa
     5341 acggataaca tcagatgata aaaactgggc tgagaaaaat tgggattacc aagcccatat
     5401 ttttgccacc attgcccttg aaagccataa atattatttt gaacaaggca aacttttgcc
     5461 cattccacag gtgtttgagg agtggataga aatggtgcag gtgttgaaaa gtgtttagaa
     5521 ataactggta aaattttcca taaaaaacac cgctttcatc acaaaagcgg tgctttcaaa
     5581 tcatcaaacc ttaaccacaa tcttaccaat ctgctgattg cttgccatat attcgtgagc
     5641 tttaaccatt tcatcaaagg caaagatttt gtcaatttca gggcgtaact gaccgcttgc
     5701 caaaccgtca tagacaaagg ttttggcttg tgccaatttt tcaggtacgg tggtaatttc
     5761 aaagagttca tacccccgca cggtcaaatg cttacccaaa atcgggaaca ctggcacagc
     5821 aatatcatca tggcttaacg ctccataaat gatgtaacga ccatcttgtg ccattgcatt
     5881 gatgattttt gccgcctctt ttctgcccac agggtcaaat accacattga cgcctttgcc
     5941 attggtgatt tcaaaaagtt tggcggttac atcgtcttcg cttgtggcaa tcacaaaatc
     6001 cgctcctttt tccaaaagta catcgccttt ggcgtgggtg cgagacaagg caatcacggt
     6061 tgccccttgc attttggcga tttggatact ggctaaacca accgaactgg ttgcaccgcc
     6121 cagcaccaca aaatcgcctt tttgtacttt gccaaactca atcagtccgc cataagcggt
     6181 aacaaacgcc atccaactgg cggacgcttg ttccattgac aaattatcag ggtgcttgac
     6241 cacagcgtgt tttggcatat tgacgatttc gccataagtg ccgtattcgg taaacataaa
     6301 ggacggaata atgctcacct tatcgctaat ggcaacttcg ttcacaccct cgccaatcgc
     6361 cacaatcaca ccagcccctt cataacccaa agtcgcaggg aatacagggt caatcacata
     6421 cgccccttca cggtacatca tttcggcacg gtttaagcca atggcttgga tttggatttg
     6481 tacttcgtgt gcttttggtg caggaattgc tacatcaacg atttgcaaga catcaggcga
     6541 acctgttttt gtaaattgga tttgtttgct cattgttttg accttttgtg taaataatgg
     6601 gcgtatttta atgcaatgaa tttattttaa acacaacatc aattgcaaaa cacttttgct
     6661 aaatttacat aaatacattt tcacaatgtc tgaaaagttg ttttgcaaat tttaaaaaga
     6721 aaaccaccgc ttgccgatca caagcggtgg tttttgtggg ttattttgca agaggtgtca
     6781 gcttggctac agtaagcgga taaatgcgac gccggctaag agtaaggtaa cgccgatgat
     6841 ctgcagcggt agaatgggtt tttgtgtaat gccgaacaga ccgaatttat ctaccagcag
     6901 gctgccgcaa atcaggccag agaggacgag catcaccacc gagcctgtgc cgatttgggg
     6961 gacgagccaa acgccagcga ggataaacag gctgcccagt atgccgccgc tccatatcca
     7021 aaacggtttg ccttcggttg gctggcagag tttcggcagg cttttttcat aaaacagcac
     7081 taccagtaat aagccgatgg caccgacacc gaaggagact gttgctgcgc cgagtgatga
     7141 gccgggctgt ctgccgaatt cgccattaac ggcggcttgg gttgctaatg cggttccgcc
     7201 taatatgccg actgcgcgcc acagccataa atttgcgttt tctttgcgtt ttagaccgga
     7261 cagatggggc agtaccacgg caatccatac gccgaataag actaaaccaa tgccaaacag
     7321 gcggctggcc gtgaaggcta tgtaaggcga gttaagccaa gcgaaagtgt cgatcagcac
     7381 gcccatcagc acttggccta aaatcggcat gaccgcagtt tgtacgccgc cgagcttggg
     7441 gaagatcagt acgtttgccg ttagccccac catgccgagt aatccgcccg tccatgccca
     7501 taaggggacg ttgcctaaat tgtcgaggct aaatgctggt gtttgttgca tgatgagcga
     7561 gagtccgagt agaaacagga ggcctacgct gaaagagaca aacgaggtta aaaatgccgc
     7621 acccacgtgc atacgcaaac gggcgttgat ggctgattga aatgcaatca gcacgccggc
     7681 taaaataccg ataataaatg tcatgactaa ctgggttgtg ctgccgcctc aaaatgagtg
     7741 gtggttgaaa agaaatgccg tctgaatgcg gattcagacg gccttaaggc ttggtatcgg
     7801 cgtttacctg atgttgaata gccgttttgc ctagccggtt tattcgatga atttcaccac
     7861 ggtttcgaaa tctttacgtg ctttttggcg gatttcttta tcacggtaac cgaaggtaca
     7921 catcaccgat acgccccatt cgcttgggtc aaataatcct tccgctgcca aaatatcgtt
     7981 gacttcttgg taagcgaaac cttctatcgg acaagaatct acgccaatta aagctgcacc
     8041 ggtcatcata ttgcccaatg cgatgtaggt ttgtttgctt gcccagtcaa acaggctgcg
     8101 ttcgctgtct aaaatgccga tatctttctc ttggaatttt ttatacacgg ccatggcttt
     8161 ttcgcgcgct tcgccttgta aacctcgtct atccataatt tcagaaaaat attggctgtc
     8221 gtaacgggca tttttcttcg ctaaaatcac cacgatatgg cttgaggttt ccatagttgg
     8281 aatgccccag cagtaaggtt tgattttttg ccgtaattca gggttttgca acactaaaaa
     8341 ctgccaaggc tctgagccta ccgaacttgg acttaaacga ccgagttcca gaatatagtt
     8401 gaaatcttca gccggaattt ttctgctgcc gtcgtaagaa cgggtagatg cacggtaatg
     8461 aaaggcattg attacgtctt ctttgttgaa aaattgcatg gaacactcct aaaaatgcaa
     8521 aacagtcttt tcagacggtc tgaaaagtct agatgaaata cggataagta taaaagattt
     8581 aagttatttt taataattga taattttgat atttaggtat aagttgacgt gatgagaaaa
     8641 aacagaccct ctgaatgttc aggcggtctt taacgttggt tgtttacata aataatccgc
     8701 gttcatattg cttcggtaca aactgcattt cactgctgtc tgctgcattt tggtcatatt
     8761 gcgcattcaa tacccagtac ggatcgcgca ataaggctct tcccacagcc actaaatccg
     8821 catcgcccat acctaagata tgatcgccta ccgccggatt atccaacata cctactgcaa
     8881 ttaccggttt gcccgtagcg agcttcactt gacgggcaaa gtctacttgg taacctgcgt
     8941 aaaattcggg gtgattacct gcatgcaata caccatcacc accaccgctg atgtctaaga
     9001 catctgcgcc tgcatcggca aaacgtttcg ctacctgcaa accataatcc aagccaaagc
     9061 cgttttcacc gtattcttgt gcagaaatgc ggacaattaa cggcatttca gacggcatca
     9121 cttcacgtgc tgcctgaatc acttgctcgc caaacaacat tttgtcttgg ccgtactcat
     9181 cactgcgctg attggatttc ggcgaataga attggtgaat tagataaccg tgtgcgccgt
     9241 ggatttcaat tgtatcaaag cctgcctcaa cggcacgttt gaccgaatcc ttaaaggctt
     9301 gaaccaatgc tttgacttcg tctgtcgtca gctcgcgagg tgtaatcaga ttttgtccgg
     9361 cataatccaa ctcaccgtag tgaattgcac ttggagccac tgcatccggc tcgtcttggg
     9421 ctttgcgtcc ggcatgggcg atttgcacac cgatttttgc cccttgagca tgaacgctgt
     9481 ctaccagttt tttgaatgcc tgttgttgtt catcgttcca taagcctaag cagtttggcg
     9541 taattctgcc gtttggcgcc acattggtca tctccacaat aatcaagccg acaccaccta
     9601 ctgcacggct ggtgtaatgc acgaaatgcc aatcgttcgg tacgccgttg gttgccgaat
     9661 attgacacat tggtggcata accacacggt ttttcaatgc taagttttta atgttaaacg
     9721 gggtgaataa ttttctgaac ttcgccatgt tgccttcctt aatgaaatag attaggtgga
     9781 atgataattc agtgctatta tctattcaaa ttgattattg tgatagttag gtataaaaat
     9841 gagtgatata agaacactgg atttcaattt gctcaaagct tttgtggtgc tgctggacga
     9901 atgcaacgtt agccgggcag cacaacgatt atccatcacc caaccggcaa tgagcggtat
     9961 tttaaaccgc ttgcgcgaga gttttaacga tccgttattt gtgcgagtgc aacacggtat
    10021 gcagccaacc gaccgcgcgt tgcaactggg gcaaaccgca cgcaacattc tgcaagatat
    10081 cagctccatg ctgcaaccac ccatattgga accggaacat ctgaatatga ccttgcgtat
    10141 tgccgcaatg gattatgtac aacaaattat tgccttgccg ctgattctgc gtttaagacg
    10201 gcttgctccg aatgtaaaag tcgccttact gccggtgcag gggcaaaata tcaaaacttt
    10261 gttcgagcaa aaaaaaatcg atcttgcctt ggtcagccgc caacatttaa gcacggatac
    10321 gctgaaaacg gtattatatg aagaacgcta cgtatgcgcg atgagcaaaa cacacccgat
    10381 ggcgcaaaca ccgctatcgc tcgatcaatt ctgcaatctt cccttcgcaa tgctttctta
    10441 caacggcgga gaattcagcg gagctacgga tctagcgtta caaaagatag gactacagcg
    10501 caaagtaatg gtctcggtaa accatatttc cctgctgccc cagctgctac aaggttccga
    10561 cttagtcgca gtattgcccg aacgcttagc aaaaacctta cccaatgttt atttacaacc
    10621 tccgcctata gaggtagaag gcttcaccat gatgatggct tggcacgaaa gaaccgaaca
    10681 agatacggcg catcgatggt taagagaggt gctgcagggt gtggtaaaac ctaaacaggc
    10741 tctttaatta ttctttcttt tgctatgaaa aaagccgttt atatttttag ataaacggct
    10801 tttttgcatt ctaatattag tatttttcta caaactgagc ataggcatta atgaagtttt
    10861 gcattgagct ttttaatgtc tcagaggcaa tttcaccctg ttcatcaaat acgcctgtaa
    10921 ataagtttcc tacgtttaat gcgaaaggta aggttggcat atttacaaat gagcctgaag
    10981 taatagtacg tacttgatca gctgcacgta caccgcctgc cgggcttgcg ccaacggtta
    11041 cgatacctgc cggtttgcca atccatttgc tttgccccat tgggcgagaa accacgtcaa
    11101 tcgcattttt aagcattgca gaaaagcttg cattatgctc aggtgtgact aataacacgc
    11161 catctgccac agcaaccgct tcacgcactc tggtgtattg tgccgggctg ttttcatcta
    11221 aatcacggtc gtaaagtggt aagtctgcaa tatccacaat gtttaattga atgcttgcag
    11281 gtgccatttt ttgtaagtga cgaacagtca agtgactaaa tgaagttttg ctgccgctac
    11341 caattaatac tgcaatttgt tttgccattt tataattcct tagtacatag agaatatagg
    11401 cattttatcc ctttcaatct gtttcataaa gcgcttatga tgaaaagcac tatttactta
    11461 tattaaataa ttttgcaaat tttaggccaa atttgaccgc ttttatcttt agctaaaaag
    11521 gttataattt gtagaaatag atcttaattt agggttttta tgctttttct aaacaaaata
    11581 aaacagcttt tcatcttcgc ctttacgcta gtgttatctg cttgcagttt ggttgtttat
    11641 aagccagttg aaacaattaa acaggtaaat gttgaaagag gttatcgaca aaaaaatgtg
    11701 atcgctgaaa gtgcaaaaga cggtaatatt gttgtcatca tgttttcagg tggtggaaca
    11761 agagcggcgg cgcttggtta tggagtgttg gaagagttta aaaaggtaag ggtgaaagaa
    11821 acaaataaag gtaatacttt attagagaat atagatattg cctttggcgt atcaggtgga
    11881 tcgatattag ccacttattt tgcgttggaa ggaaaggata tcattcctaa atttgctgac
    11941 cgttttttaa aagcgaactt tcaaaaagat attattacag aggtgttttc gttatccaat
    12001 cttcctcgtt taagttctcc tcaatatggg cgtggtgatt tattgcaaga acgcttaaat
    12061 tttgcccttt atcatggtaa aaagtttggt gatttagtga aaaatcgtaa aggacctttt
    12121 gctgtgatta gcgcaacaga catgaacatt ggtcaaaaac tgacctttac gcaagaaacc
    12181 tttgatgggc tttgtttaaa tttgaatgat ttagaaattt cccgtgctgt tgctgcttct
    12241 agttctgttc ctctgatttt tgcgccgctt acactgaata acaatggtgg aaattgccat
    12301 tttagtatgc cacaagaatt tagtgctaga gaaaaagcaa ttgatggact aattacaaaa
    12361 aatattgaag aaacgaatca tatactcagc ctttatcaag atagtaaaga acgccccttt
    12421 atccatttag ttgatggtgg attaacagat aatttagggc ttgccagtgt gctggaaata
    12481 tctgatgtta tgggtattga agagatgtac cagtatattc atcagcttag ggtgaaaaat
    12541 attgtagtga ttaatgtaaa tgcgcaaaat gaagtatcta gcgagatcga taagaccgca
    12601 aatgtaccgg gggtggctga tgtagtgaat acaatagtta atgtgccaat tgatagaacg
    12661 acacaaatta atttacaacg ttatcgccag tttacagatg gttggaatga atatgcaaat
    12721 aaacagccat caaagatcga aatgcatttt gtcagtttag gtttaaaaga attacctgat
    12781 ggtgatttaa aaaaagatgt gctaaatatt gcaacatcat tttatttgcc ggaagaggat
    12841 gtagataaat tacgtgaagc tgctcgggtt ttattgcagc aatctcaaga atataatgcg
    12901 gcattaaaaa cactgcagta gtaaaaaacc gaccaagcgg tcggtttttg gtattttttt
    12961 gcaaatattt attcgctgat gtcgtttaaa tccaacaact cttgcgaaag aataatgccg
    13021 gttaagtcag cataaacgta atcttcgggg aagaaggtta caccgccaaa attcacaggc
    13081 gtatccactt cgccaatgtc ggtattatct gctcccactg gaattggcgc taaagcatga
    13141 ataccgatat ctaatctttc caaaatatct aattggcgaa ccgcaccata aacgatgata
    13201 ccttcccagc cgttatctac agcaagttga gccagctctg cgtcaattaa ggcacgacga
    13261 accgcaccgc caccatcgac taacagcact cgcccttcac cctcttcttc caaaacttca
    13321 gcaattaaac cgttgctttc aaagcattta accgtggtaa tcttcccaaa gaaggaagaa
    13381 gcaccgccaa agcttgagaa aattggttca accacatcaa cttggtcaga ataaagatcg
    13441 caaagtgcag aggtatcaat acgcataata tgctcctgtt cgtagattat ttagctaaag
    13501 tataaacctt cgcccaaaat ttgcaaaatt ttatcgaaaa aagaccgctt acaggctttt
    13561 ttcttatgct ttattttcta gtgaaccgct tttaatatgc aattccattt ggttgtaagg
    13621 aatagatata cctgcttcac caaaggctaa ttttacttgt tcgataattt cccaatatgc
    13681 tgcccagtaa tttggtgtct gaacccaagg gcgaacaaca agttgaacac tatgcggtgc
    13741 taaagcgccg actgctacta caggtgccgg atcttttaat acataagtat tggcgtctaa
    13801 aatgcgttgg ataatctctt tcgcctcttt taagttagat tcataagaaa tatcaaaggt
    13861 gaaatcaata cggcgtgtcg ggttgttaga gtagttgatg atgctgtcag aaaacacttt
    13921 gccgtttggt aataacacgg ttttgttatc gccggtgcga agttccaaca ctaaaagccc
    13981 catttgttca accacgccgg tcattccgcc ggtttcgatt aaatcccctt tgcgaaatgg
    14041 cttgaagatt aacaacatca cgccggcagc aaagttttgt aatgagtttt gtaatgataa
    14101 accgatggct aaaccggcag caccgattaa tgcgaccagc gagctggtgt taatgccgat
    14161 ttgtgaaagc gaggcaatca ccacaattaa cagcagtaaa aaatagctga ttgagacaat
    14221 aaaactttgc agcatttcat ctttggttga ttttaatgcg gctttaccga gtaaacggct
    14281 aattaggcgg gcaagaaatt tcccgactac aaaaatcgca atcgccagta aaattttggt
    14341 gccataaggg ataatccact catttagcat agtttcaata ttcatattac tgactttgtg
    14401 gattactttt tcggtttcgg caaccacgtc aatgtttgga gctgtttcgg tgactttttc
    14461 agtcatattg tttccttaaa attaaaatga aaaataagcc tagcgaattt gcctcactcg
    14521 ctaagcggtt ttgtgctaga atttagagca aaattttctc taaaagacaa gataatgaca
    14581 acagaaaaag taattagtgc cggcgttcaa ttttttacga tcagtgaaga tgaagccgga
    14641 cagcgtttag ataatttttt attggcaaag ctcaaaggcg tgccgaaaag tttgatttac
    14701 cgcattgtgc gaaaaggcga ggtgcgggtg aataaaggac gaaacaaacc cgaatataaa
    14761 ttacagcctg atgatttagt gcgtgtgccg ccggtgcgtg tggcggaaaa aaatgaagcc
    14821 ccaatttcga ctaaattaaa caaagtggcg gagctggaga gccaaattct gtatgaagat
    14881 gagtcaatgc tagtaattaa caaaccttca ggcattgcag tacacggtgg cagtggttta
    14941 agttttggtg tgatcgaagc cttgcgtgca ttacgtccac aggctcgttt cttggaattg
    15001 gtacaccgta tagaccgtga tacatcaggc attttgctgg tggcgaaaaa gcgttcggcg
    15061 ttacgttcct tgcacgaaca actgcgtgaa aaagtagtac aaaaagacta tcttgccctt
    15121 gtgcgagggc aatggcaggc tcataccaaa gtgattaaag ctccattgct aaaaaacgaa
    15181 cttgccagcg gtgagcgaat tgtacgggtg agtgaagagg gtaaaccgtc cgaaacccgt
    15241 ttcagcattg aagagcgtta tgccaatgcc actttggtga aagcttcgcc tattaccgga
    15301 agaacccacc aaatccgtgt gcatacccaa tatgccggac acccgattgc gttagatgac
    15361 aaatatggtg atgcggaatt tgacagcaaa atgaaagaag tgggcttaca gcgtttattt
    15421 ctgcacgccc atgctattcg ttttgaacac cccaaaaccg gcgaagaaat ggtcattacc
    15481 gccccgctgg ataaaacttt aaaaggcgta ttggcaaaat taagggctaa ttactaaata
    15541 acttaatgag agagtaagat agcgcaagcg tccacgcttg tgctgtaaat caacatagag
    15601 tggtacaagc gtggacgctt gcaccaacaa aatataagca aaaatatgca aatccatttc
    15661 aaaaattttc aaaaaaatga ccgcttgtta gatttaacca caccgcaaat tatggggatc
    15721 ttaaacttca cgccggattc attttccgat tcgggcaagt ttttttccct cgataaagcc
    15781 ttgttccaag cggaaaaaat gttagctgat ggggcaagca ttattgatat tggcggtgaa
    15841 tccacccgcc ctaatgcggc gattgtgagc ttagaacaag aattagagcg tgttgtgccg
    15901 gtggtggagg cgatccgcag ccgttttgat tgcttgattt cggttgatag ctccaaagca
    15961 gaagtattca aagagtcggc aaaagtcggt atggatatca ttaacgatat tcgagcctta
    16021 accgagccga atgcgttggc agcggcagta gaattgggct tgccggtttg tttaatgcat
    16081 atgcaaggca acccgcaaac aatgcaacaa aatccgcact atgatgatgt gttggaagat
    16141 gtggcagatt tcttaaatca acggattttc gagtgcatca ccgcaggcat tcccaaagaa
    16201 cacattattt tagaccccgg ttttggcttt ggtaaaagcg tgaaacacaa ttaccaatta
    16261 ttgaaacacc ttaaagcctt tgtggattca ggcttccctg tgcttgccgg actttcccgt
    16321 aaatcaatga ttggtgcggt gttagataaa ccggtagaac aacggctact tggctctgta
    16381 gtaggggcgt tattagccgc tcaaaatggg gcgaaaattt tacgggtgca cgatgtggca
    16441 gaaaccgccg atgcgttaaa aatctggcag gcaatgctgg aatcagataa tgaggaaaaa
    16501 tgatgacaac cttagtttat ggcattaaaa attgcgacac agtaaaaaaa gccttgaaat
    16561 ggctcgaaga tcataatcaa aacccacaac tgcacgatta ccgtgtggac ggtttaaatg
    16621 ccgattggtt agtggaaatg gaagcaaaat tcggttggga aaacttagtt aataaacgta
    16681 gcaccacttg gcgaaacctt gatgaggaaa ttaaaaacaa ccttaaccgt gagtcggcat
    16741 taaaagtgct aaccgaacag ccgaccctaa ttaaacgccc gattgtgatt aaagaggata
    16801 ttgctttgat tggttttaat gagaaagagt atgtggctgc gtttaattaa ttttttcccc
    16861 tgcttgtagg gacaggtcct gtgcctgtcc gtagtcttta ggattgttcg ggcgggcaca
    16921 ggacccgccc ctacaggata tatagcaaaa aattcaccca aaacaaccgc ttgtaaccta
    16981 tgaaaaatga aattatttcc cttgcacaga acctaatccg ccgtgattcc atcagcccac
    17041 aagacaaagg ctgtcagcaa gaaattgcac aacgtcttga aaaactgggc tttaatattg
    17101 aatggttgcc gtttggcgac accttgaatt tatgggcaac gcacggctcg gaaaatggta
    17161 aaacagagcc ttgcattgtg tttgccgggc atacagatgt ggtgccggta ggcgatgaaa
    17221 gccaatgggc ttatccgccg ttttcggctg agattgtaga tggaatgctt tatgggcgag
    17281 gggcggcaga tatgaaaggc tcgctctcgg cgttagttgt ggcggcagaa actttcgtgc
    17341 aacatcaccc aaaccataag ggcaaagtgg cattattgat tacctccgat gaagaggcag
    17401 cagccaaaga cggtacggta aaagtggttg aaaccttaat ggctcgcaat gaagcggtac
    17461 attatgcggt agtgggcgaa ccgtctagta gcaaggtgtt tggcgatgtg attaaaaacg
    17521 gcagacgtgg ttcaattacg gcagatctct atatcgaggg cattcaaggg cacgttgcct
    17581 atccacattt ggcggaaaat ccggtgcata cgtcactggg ttttttaacc gagctgacca
    17641 cttatcagtg ggataacggt aacgaatttt tcccgcctac cagtttgcaa attgccaata
    17701 tcaaagccgg cacaggcagt aataatgtga ttccgggcga gctttatgtg cagtttaact
    17761 tacgttattg cactgaagtg accgatgaaa tcatcaaagc caaagtagcg gaaatgctcg
    17821 aaaaacacgg tttgaaatac cgaataagtt ggaatttatc aggcaaacca ttccttgccg
    17881 gcaatggaaa attggtcgaa gccgccttac aagcggtcga aaatgtcaca aaaattacgc
    17941 ctcgtttaga cacaggtggc ggtacttcgg acggtcgttt tattgcatta atgggggcag
    18001 aggtagtgga atttggacca ctgaacgcca ctattcacaa agtgaatgag tgtgtgagtg
    18061 cggatgattt ggcacattgt ggcgaaattt attatcaaat tttagaaaaa ttattggcaa
    18121 ctgcataacc ctaaataggc agaatgttat caaattgtat tctgcctatt ttttatgtag
    18181 ctattctgtt aaacagcgtt tacactagcg gcagttttta tatttatagg taaatgttat
    18241 gcaactctac tcttatatct gcttgctgtt tgggcttgcg atgtttattt cgttttttac
    18301 ccgaaaatta aacgaaaata ttcaaaccac tattgcaatt acagcctctg cccttgtcgg
    18361 ctcccttctt attcttacct tcggttctct cggctggttt aatgttgata aacttgccat
    18421 ttccattttt gaacaactcg attttaaaag cttcctgtta aacggaatgc tggggttctt
    18481 gctttttgcc ggttcacttg ggattaaact accattaatg aaagagcaac ggcgggaaat
    18541 tgcagtttat gccttatttt caaccttagt ttctactttc ttgatcggtg cgttaattta
    18601 tggcgtggca aggctacttg ggttagagct cggctttgtg tattgtttgc tgtttggctc
    18661 actgatttcg ccaaccgacc cgattgccgt attggcaatt atcaaaagcc tgaaagcccc
    18721 aaaacgcctt tcgatgcacg tggagggcga atctctgttt aatgacggta tcggcttggt
    18781 gatttttacc actatctttg ccgttgcttt tggcggacaa gaaccaaacc ttagcggtat
    18841 taccggactg ttcttgcaag aagcggtagg cggtatcgtt tttggcttat taaccggttt
    18901 tgtggcacat aaatttattt ccgcaaccga tgacggaagc cttgaaattt taattacgct
    18961 aacgattcca acagtcggct ttgtgattgc aaactaccta cacgtttcag gggcattaac
    19021 aatggtagtt gccggtatta tgattggcaa ctggactcgc cgttccggtt tctccgaaca
    19081 gagccaaaaa tatcttgatc acttctggga gatgatcgac cattcattaa actacctgtt
    19141 attcctgctt atcggcttaa gtacactgtt agttgatttc acctttattg gtggggtgtt
    19201 aatgttggca gcaattccaa tttgtttgct tgcacgctat atcagcctgt ggattccata
    19261 ccaagtgtta aaacgtttcc gtacttataa cccgtacacc ttaaaaatta tgacttgggg
    19321 cggtttacgt ggtggattag cccttgcgat ggcactttcc gtaccggcag gggctgcggt
    19381 ggtatcgagc tcagaaggca atcttgatgt acgtgatttg attttgttaa tgacttatgc
    19441 ggtagtcact ttctcgattt tagtacaagg ttcaacggtt gaaccgatga taaaaaaatc
    19501 caagttggta gatccaagaa aagtggcact caataaatta ggtgcacctg atgatgtaat
    19561 tccacatatt taatagcatt tataactgaa taacatatca ttttgctaaa gattattagc
    19621 catctagacg gctttatatt taaatacctc tcacgttaat ttgttgagag gtatttttta
    19681 tgttattcac aggattatta tgtggctttc tactcgggtt tgtgatgcaa agagggcgtt
    19741 tttgtattac cggagcattt cgtgatctct atgtaacaaa gaatagccgt atgtttgtgg
    19801 cacttttaat tgcaattacg gtgcaatcga tcgggatttg gcttttgtat gaagccggct
    19861 cttttagttc tccggcggaa gatttgcctt tgctcgcagt gatcattggg gcatttctgt
    19921 ttggtatcgg cattatttat gcaggcggtt gtgctacagg aacgtggtat cgtgccggtg
    19981 agggtttaat cggcagttgg gttgcactgg ttatttatgg gctgttttct gcttctatgc
    20041 gaaccggtgt gttagcccca cttaatcaag agctaaaaag caatgtaatt caacaccgca
    20101 cgatttatga aacatttggt atttcccctt gggtgttagt gtttatcctg agtgtaatta
    20161 cattggcatt atccgcccac agcatttaaa aggttaattt tttaaggagt aataaagatg
    20221 aacgtacgtt tacctgcctc agggcttgtt tgcccgtttc cattagtcga agccaaagcg
    20281 gcgatggcaa aattgaataa aggcgatagc ttaacgattg aatttgactg tactcaagca
    20341 accgaagcca ttccaaattg ggcggaagag gaaggctatg aagttaccga ttaccaacaa
    20401 cttggtgatg ccttgtggga aattacggtg gttaagtaat tagcaataaa aaagctctac
    20461 ttttttgtag agcttttgct ttgagttttg tatttactaa ggattagagt aaacccggtt
    20521 gacctaatgc tgggtctgtt gctcttgcag caatagcatc ttcaaccgtc atacctaatg
    20581 cttttgccac accttcacca tatgccggat cacaggcata gcagttacga atatgacggt
    20641 atttaatgaa gtctaatgca tcgcccatac ctgcagcagt attattgaat aatgcttgtt
    20701 tttgttcatc attcatcata ttgaacaata cacgtggttg gctgaagtag tcagcatcgt
    20761 cttcacgata gttccagtgg gctgcatcac cattaatttt cagtggtggc tctgcatatt
    20821 gagcttgttc ttgccatttg ccgaagctgt ttggttcgta gtgaatggta ctaccgtagt
    20881 taccgtccac acgaccttga ccgtcacgag cgttgctatg aaccgggcaa cgtggagcgt
    20941 ttacagggat ttggtggtgg ttcacaccta aacggtagcg ttgagcatcc gcatagttga
    21001 ataaacgagc ttgtaacata cggtctggag acacgctgat gcccggcact aagttacttg
    21061 gtgcgaatgc agattgttcc acatcagcaa agaagttttc agggttacga tttaattcaa
    21121 actcacccac ttcaattaac ggatagtctg atttcggcca taccttagtt aaatcgaacg
    21181 ggtggtatgg tactttgtct gcatcagttt caggcataat ttgaacaaac attttccatt
    21241 tcgggaaatc gccacgctca atcgcttcgt ataaatcacg ttggtgactt tcacgatcgt
    21301 tagcgataat agcggctgct tcttcgttag ttaagttttt aatgccttgt tgtgtatgga
    21361 aatggaattt cacccagaaa cgctcattag ctgcattgat gaagctataa gtatgtgagc
    21421 cataaccgtg catatgacga tatgaagccg gaataccacg ttcactcatt acaatagtca
    21481 cttggtgaaa tgcttctggt aataatgtcc agaaatccca gttgttagtt gcagaacgca
    21541 tattcgtgcg tgggtcacgt ttaaccgctt tgtttaaatc cgggaattta cgtgggtcac
    21601 gtaagaagaa cacaggggtg ttgttaccca ccatatccca gttaccttct tcggtataga
    21661 attttaatgc gaaaccacga atatcacgct cagcatctgc cgcaccacgt tcacctgcaa
    21721 cggtggtgaa acgagcaaac atttcagttt ttttaccgac ttggctaaaa attgccgcac
    21781 gagtgtattt agtgatgtcg ttagttacag tgaaagtacc gaacgcaccg gaacctttag
    21841 cgtgcatacg acgctcagga atgacttcac gcacgaagtt cgctaatttt tcatttaacc
    21901 ataaatcttg cgctaataat ggaccacgtg gacccgctgt taagctgttt tggttatcaa
    21961 caacaggtgc accgttgttc attgtcaaat gtgtaacag
//
LOCUS       DANLXB010000011        21951 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLXB010000011 DANLXB010000000
VERSION     DANLXB010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21951
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            330..1721
                     /gene="ffh"
                     /locus_tag="PXD41_000285"
     CDS             330..1721
                     /gene="ffh"
                     /locus_tag="PXD41_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL6287852.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
     gene            complement(1861..2619)
                     /locus_tag="PXD41_000286"
     CDS             complement(1861..2619)
                     /locus_tag="PXD41_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6287853.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            2793..3698
                     /locus_tag="PXD41_000287"
     CDS             2793..3698
                     /locus_tag="PXD41_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6287854.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLVVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            3700..4941
                     /locus_tag="PXD41_000288"
     CDS             3700..4941
                     /locus_tag="PXD41_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6287855.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            4938..5570
                     /locus_tag="PXD41_000289"
     CDS             4938..5570
                     /locus_tag="PXD41_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL6287856.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            5572..6348
                     /locus_tag="PXD41_000290"
     CDS             5572..6348
                     /locus_tag="PXD41_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL6287857.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            6401..7759
                     /locus_tag="PXD41_000291"
     CDS             6401..7759
                     /locus_tag="PXD41_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL6287858.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            7821..9161
                     /locus_tag="PXD41_000292"
     CDS             7821..9161
                     /locus_tag="PXD41_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL6287859.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            9173..9862
                     /locus_tag="PXD41_000293"
     CDS             9173..9862
                     /locus_tag="PXD41_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL6287860.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            10019..11836
                     /locus_tag="PXD41_000294"
     CDS             10019..11836
                     /locus_tag="PXD41_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL6287861.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            11839..12456
                     /locus_tag="PXD41_000295"
     CDS             11839..12456
                     /locus_tag="PXD41_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6287862.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(12540..13151)
                     /locus_tag="PXD41_000296"
     CDS             complement(12540..13151)
                     /locus_tag="PXD41_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL6287863.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            13346..14254
                     /gene="glyQ"
                     /locus_tag="PXD41_000297"
     CDS             13346..14254
                     /gene="glyQ"
                     /locus_tag="PXD41_000297"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL6287864.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            14334..14594
                     /locus_tag="PXD41_000298"
     CDS             14334..14594
                     /locus_tag="PXD41_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287865.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            14637..15671
                     /locus_tag="PXD41_000299"
     CDS             14637..15671
                     /locus_tag="PXD41_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6287866.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            16049..16513
                     /locus_tag="PXD41_000300"
     CDS             16049..16513
                     /locus_tag="PXD41_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287867.1"
                     /translation="MSIKKLLSTTIDQLENIIQVSGESFEKITSDLAEKAKELNSEYN
                     IKCEKLGYAITLFEKNSEIEKRYISLLSDFDMDTSIKGFEKLSLLMNGKNDNARKEAE
                     EHFNELQNGLLEAQDYKKDLDIKIRKLARELYNENIAQLEIEEIKEHLYKNW"
     gene            16522..18588
                     /gene="glyS"
                     /locus_tag="PXD41_000301"
     CDS             16522..18588
                     /gene="glyS"
                     /locus_tag="PXD41_000301"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL6287868.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(18693..19994)
                     /locus_tag="PXD41_000302"
     CDS             complement(18693..19994)
                     /locus_tag="PXD41_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL6287869.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(20008..21285)
                     /locus_tag="PXD41_000303"
     CDS             complement(20008..21285)
                     /locus_tag="PXD41_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287870.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(21314..>21951)
                     /locus_tag="PXD41_000304"
     CDS             complement(21314..>21951)
                     /locus_tag="PXD41_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL6287871.1"
                     /translation="DKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAYEKSVIKIINGH
                     HTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTHIIIGHEGKPIG
                     LFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFLKAVTHIEQHTT
                     KHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREFKNNT"
BASE COUNT         6609 a         4271 c         4873 g         6198 t
ORIGIN      
        1 gaagccctga tgagcaatca tcagggtttt cttttcgctc ttattttttc aaacaataat
       61 atccccttta attttgtaat ttacctctca tttctaacat aaatttgaaa atatcacttc
      121 acttttatac gcaattcgga gtattatgat cgcacaatat aactaaataa tgattcctcg
      181 aatatcgtca aattttacgg catagtttaa tcgctatgcc gtttttttat ttccctataa
      241 ccgtaacgct tttttttgta taatggcggc aactttccgc tcacaagcgg tacttttttc
      301 ctaaaatttt gcaaattgag aaagctgata tgtttgaaaa cctctctgac agactgtcta
      361 aaacgctgcg taacattacg ggcaaaggtc gcctaacgga agataatatt aaagataccc
      421 tgcgtgaagt tcgtatggca ttgttggagg cggatgttgc cctccctgtt gtgcgtgatt
      481 tcatcaacaa ggtcaaagag cgtgcgttag gggttgaggt aaacaaaagc ctcacgccgg
      541 ggcaagagtt cttaaaaatc gtacaaagcg aattagaaac ggcaatggga gaagccaacg
      601 aggagctgaa tcttgcggcc caaccgcctg cggtaatttt aatggcaggt ttgcaaggtg
      661 cgggtaaaac cacctctgtc ggcaaattgg caaaattcct gaaagaacgc cacaagaaaa
      721 aggtgttggt agtttctgcc gatgtttacc gccctgccgc tatcaagcag ctacagaccc
      781 ttgctgaagc gttaaaagtg gacttcttcc cgaccgaaac cagccaaaaa ccggtagcga
      841 ttgcagaagc ggcactgaag cacgctaagc ttaatttctt tgatgtattg attgtggata
      901 ctgccggtcg tttacacgtt gatggcgaaa tgatggaaga gatccaacaa atccacgctg
      961 tgctgaatcc gattgaaacg ctatttacgg ttgatgcgat gaccggtcaa gacgccgcca
     1021 acaccgcaaa agcctttaac gaagcgttgc cgcttaccgg tgttattctt accaaagtcg
     1081 atggcgatgc ccgaggcggt gcggcacttt ctattcgcca aatcaccggt aaaccgatta
     1141 aattcttagg tgtgggtgaa aaaactgatg cccttgagcc gttccaccct gaccgtgtgg
     1201 cttcccgcat tttaggtatg ggcgatgtaa tgtctttaat tgaagatatt caacgctcgg
     1261 ttgatcaaga aaaagcggaa aaaattgccg ccaaattcaa aaaaggcgat gaatttacct
     1321 tggaagattt ccgtgagcag cttatcgaaa tgaaaaaaat gggtggaatg atgtcgatgc
     1381 tcgataaact accgggggcg aaaaacctgc ctgaccacgt taaaagtcag gttgatgata
     1441 aaatgttcat gaaaatggaa gccatcatca attctatgac cttaaaagag cgggcaaatc
     1501 cggatattat taaaggctca cgccgccgcc gtatcgcact tggctccggc acacaggtgc
     1561 aagatgtaaa taagctgctc aagcagtttg atgatatgca acgtatgatg aaaaaaatgc
     1621 gtaaaggcgg aatggcaaaa atgatgcgtg gtgttaaagg tatgatgggt ggtggtctag
     1681 gcggtctcgg tggcttaggc agtatgtttg gtaaacgtta atattcctat tttattagta
     1741 ccagccgaaa atcagttaac aatccgttgc taggattgtt aactttccct attaatatct
     1801 tatttgcaaa aataatactt tttgattgct tgtcgttctc agaaaaaatt ggtaagaaga
     1861 ttatcctaaa tctaatttaa tacttagccc tttcagtgcg tctcgtacat tctcaaataa
     1921 tcctttatca caaataatct ggtcaaatac agtaagaggg caaacaaaaa aagttgcgac
     1981 ttttccatat tttgaagagt ctgtcactaa aatgttttgc ttggatgcct ctaaaattgc
     2041 ttttttaacg gggattttat tttcgttcgg cgttgttaga ccttttaaat tccaggatga
     2101 agtagatata aatgccatat cgattgatag gtttttcaga aattctgctg caagtgaacc
     2161 agttgtcgat aggttttctt tacagacact tcctcctata tgaattaaat cacattttcc
     2221 tgaattacta agatagtgag caataacaaa atcgtttgtt acaactagta agtcatttct
     2281 atcgattatc cgatgagcta tttctaatgt agtagttcca gcatcaagat aaatagttgt
     2341 gtttgaggga attagctgtg atgctaaaga tcctatagct gatttctgct cttggaataa
     2401 cattgattta tcatcgtgtg gtaattccat gattaatcgt tcaagagatt gaactccacc
     2461 agatactagg gataccttac cttgctcttc cagcttttga atatcacggc gaattgtcat
     2521 atgtgatact tttagctgtt ctgccagaaa attaatactt gcgacaccat tattattaat
     2581 aagtcgtagt atttctcgtt gtctctctaa ggggatcatt ttttaaccta ttttaattgt
     2641 taaaagagat tatatcagat ttagtttcca aaattaaaat cacaaaaatt cacatttatt
     2701 gttaatattt gtgatcttca tcacagattt tatcttttct attggttaat ataccgccat
     2761 caagttcatt aatttatttg agggaataaa caatgagtca aaaatatagc gtagccgtca
     2821 tcggcttagg agcaatgggt atgggagcag caaaatcttg tatcgctgcc ggattagaca
     2881 catacggtgt ggatcttaac ccgaattatc tggaaacctt aaaagcagca ggtgctaaga
     2941 aagtcggcac aagtgcggtc gattttgccg ctgaattaga tgcggtgttg ttggtggtgg
     3001 ttaatgccaa ccaagtgaat gcggtgttat tcggtgaaaa cggcttagcc caacatttga
     3061 aacaaggtac ggtggtgatg gtatcttcca ccatttctgc acaagatgca aaaaatattt
     3121 cacagaagtt aacagattta ggcttggtga tgttagatgc tccggtttcg ggtggggcag
     3181 caaaagcagc acaaggtgaa atgactgtga tggcatcagg ttccagcgag gcattcgaga
     3241 aattaaaacc ggtattagat gcggttgcag gcaaagtgta taacattggc gaagaagtcg
     3301 gcttgggtgc aacggtaaaa attatccatc aattacttgc cggtgtgcat attgccgcag
     3361 gtgcagaagc aatggcattg gcggctcgtg ccggtattcc gcttgattta atgtatgacg
     3421 ttgtaaccaa tgcggcaggc aattcttgga tgtttgaaaa ccgaatgaaa cacgttgttg
     3481 agggcgatta caccccactc tctatggtgg atatttttgt gaaagatttg ggattggtga
     3541 acgacaccgc aaaatctttg cgtttcccgc ttcacttagc cagcaccgct tattctatgt
     3601 ttaccgaagc cagcaacgca ggttacggca aggaagatga tagtgcggtc attaaaattt
     3661 tcagtggtat cgaattacct aaaaaagagg ggaaataaga tgttaggcat tattgcagac
     3721 gatttcaccg gtgcgagtga catcgccagt ttcttaaccg aaaacgggct aaaaacggtg
     3781 caaatgaatg gtgtgccgaa aactacactt aacagtcaag ttgatgcgat tgtgattagc
     3841 ctgaaatctc gctctaaccc tgtggaagaa gcaatccaac aatcattaca agccttagat
     3901 tggctgaaac aaaatggttg ctcgcaattc tactttaaat attgttccac ttttgacagc
     3961 acggagaaag gcaatatcgg gccggtaacc gatgccctaa tggcggcatt agataccgat
     4021 tttaccgtag tcacaccggc tctgcctgtc aatggcagaa ccattttcaa cggctatttg
     4081 tttgtgggcg atgtgctact gaatgaatct ggtatgcgta accacccgat taccccgatg
     4141 aaagatgcca acttggtgcg tttaatggat gcacaatctc aaggcaaaac cggcttggtt
     4201 gcctatgctg atgtgattca aggggcagag cgtgtgaaag cccgttttgc tgaattgaaa
     4261 cagcaaggct acaaatatgc ggtagtagat gctgccgata attcacaact tgcggtgctt
     4321 gccgaagcgg ttgccgattt tcaattagtc acaggcggtt caggcttagg ggcttatatg
     4381 gcggcttacc gttcaggcgg caaaaaaggc acgaatgcgt ttgtaccaag caaaggcaaa
     4441 accgttgtgc tttcgggttc ttgctcggta atgaccaata cccaagtggc ggcttaccag
     4501 caaaaagccc caagttattt cttagaagcg gaaaaagcca ttcaggatcc gaactatgta
     4561 gaaacgcttt atcaatgggt gattgcaaac ctagacggtg actttgcccc aatggtttat
     4621 gccaccgttc cccctgaaaa attgaaagag attcaaaccc aattcggcgg cgataaagcc
     4681 agccacgcca ttgaaaatac ctttgccaaa ttagccgaaa aattacaagc cgcaggcgta
     4741 actaacttta ttaccgcagg cggtgaaact tcgagcattg tggttcagca acttggattc
     4801 agcggtttcc acatcggcaa acaaattgca ccgggcgtgc cgtggttaca agcggtcgaa
     4861 aaaccgattt ttcttgcatt gaaatcgggt aacttcggta aagaagattt cttcagtttt
     4921 gctcaggaga tgtttgtatg acagaacaag aacaaaagat tgaaatggtc aatcttgccc
     4981 gctcgctgtt tgagcggggc tataccgttg gcggtgcggg caacctctcc gtgcgtttag
     5041 atgaaaatcg cattttagtt accccaaccg gctcttcgct cgggcgttta gaggcagacc
     5101 gcctttccgt attggatatg cagggtaatg ttctttcagg agataaacct tcaaaagaat
     5161 cggtattcca cttggcgatg tatcagaaaa atccggcttg ccaagcaata gtgcatctgc
     5221 attccactta tttaaccgca ctttcttgct tggaaaattt ggataccgac aacgctatgc
     5281 gtgctttcac cccttactat gtgatgcggg taggaaaatt gccggtcatt ccttactacc
     5341 gtccgggcga catcaacatt gcccgagagc tgggggaacg agccttagac ggcaaagcct
     5401 ttttactggc aaatcacggg gtggtagtca caggttcaga cttgcgtgat gcggtggata
     5461 acacagaaga gttggaagaa acctccaagc tctattttat tctacaaggt caaaaagtcc
     5521 gttatctcac cgatgacgaa gtcaatgatc tgaaaaacag aggaaaataa aatgcctaaa
     5581 tttgcagcaa accttacgat gatgtttaac gaagtgccgt ttttagatcg ttttgaagcg
     5641 gctgccaacg ctggatttaa atatgtcgag tatttatggc cttatgatta tccggcagca
     5701 gaattgaaag ccaaacttga gcaatatggc ttaaaacagg tgttgttcaa taccgcagcc
     5761 ggagatgttg ctcaaggtga atggggtgtt tctgccattc cggggcgtga agctgatagc
     5821 catcgtgata ttgatttagc gttggaatat gccctcgcct taggttgtga gaatgttcac
     5881 gttatggcag cggtcgtgcc agaaggcgaa gatcgtgaag cctataaaca aacctttatc
     5941 aaaaacgtgc aatatgccgc cgataaattc aaaccgcacg gcattaacgt cttgcttgaa
     6001 gccctaagcc ctgaagtgaa accgaattat ctgcttaaaa gccagtttga tacgctagaa
     6061 attgtggaag cggtaaaccg agacaatgtg tttgtacagc ttgactactt ccacgcacag
     6121 aatgtggacg gcaacttatc tcgcctaacc gacaaactca agggtaaatt tgcccacatt
     6181 caaattgcct ctgtgccaga tcgccacgaa ccggacgaag gggaaattaa ctaccaatat
     6241 atcttcaaca aactcgatga aatcgggtat gaaggctatg taggttgcga gtataaacca
     6301 cgagcggaaa ccacctcagg actaggttgg tttgagcagt ataaataacc acgatgatta
     6361 gcggataaat acgtgaatac aacatttaga aggaaacttt atgtcaaatg aaatgttaat
     6421 tttgattgga ttagcaagcg tagttgctct tctggtcatt atgattaaag gtaaagtaca
     6481 cccattctta gcattggggt tagtgagtat cgcagttgcc ttaactgcag gtattccaat
     6541 gagtaaagtg atcccaacct tgatttcagg tatgggaagt actttaggta gcgttgcact
     6601 catagtaggt ttgggagcaa tgttagggaa aatcattgaa aaatctcacg gtgcggatgt
     6661 attagcaaat tggttgttac agcgttttgg tgagaaaaac gctccctttg cattaggtat
     6721 gacaggtttt atattcggta ttcctgtttt cgttgatgtt ggttttatcg tattgctccc
     6781 gattattttt agtgtagcga gacgtttagg gggaaatatc cttgtttatt ctttgccaat
     6841 cgggcttgcg atgttacttg ttcacgtttt agttccacct catccaggta ttgtagcggg
     6901 tgctcaaaac ttaaacgcag atattggctt tgtattggga attggcttag tagcagcgct
     6961 acctgcatat ttaatcggtc aaaaatttat tccgttcttt acaaaaaata atttcgtaaa
     7021 agtagtaact tcaaccgatc ttttacagca ccaaaaagat ttgattaaag agaaaggcat
     7081 tgaactacct tcttttggta aagtgttagc aatgatttct ttcccgctaa tcctgattat
     7141 gttaggtaca gtaacggcaa caaccttgcc gaaagaacat atcgtgcgtg aagtattcag
     7201 tatggtagga agctctccgt ttgccttatt tgtggctgtt tgtctttctg cttatgtatt
     7261 aggttttaga tacggttgga ctaagcataa attagaagaa gtactggagt ctgcgttagc
     7321 accgattgcg gggattattt taatcaccgg tgcaggcggt atgttcggta aagtgttaga
     7381 tgccagtggc gtaggtaaag cattagcaga tgtattagcc aacacgggct taccgttatt
     7441 ggttctttct ttcatacttt ctgcattatt gcgtgcagca caaggttctg caacggtggc
     7501 aactattact actacaacta ttctagctcc tgcagctgta gcagcaggtt ataatgatct
     7561 gcaattagca cttcttactg cagctattgg tgcaggttct atgacattat cccacgtgaa
     7621 tgattcactc ttctgggtat ggacgaaatt cttcaatgtt cctgtatccg taggcttaag
     7681 aacttggacg tttttaacga ctattttcgg tgtaatagcc tttgccgttg ttggcattat
     7741 ttggatgtta ttcgtttaat atcactctgt tactgcttaa aatccacctc ttatgaggtg
     7801 gattttttta ggagaaacct atgctgaaaa aaacactttt atttacgcta ttactttctc
     7861 actccctcta tgcagaggat atgattcagg aaaataaatc agcgaatatt acgttgcttg
     7921 ccgaaatcac cgctcaaggt caaaaaatta acggcgtggc attggaatat cctgataatg
     7981 tcttatcagg cagcgatctt cgccaactgt atcaggtcaa aacggcatta gatagtgcgg
     8041 agaaagaaaa ccgttcggtg ctcaaagcct atgtcaataa tgagccaaaa gtgaccgcac
     8101 ttccgcaagc cggtaaattt gtgattattg aattggatac ggcagataaa aatgcggcaa
     8161 cttatagcgt aaaagatgct aataaagcgc cgatgaaatt taaatccaaa gatgaaaacg
     8221 gcaacattgt agaaacagag aaagtacaag cggtcaaaat tccagagttt tttgcaaatc
     8281 gcctaatcta ttcggtggaa caaaaaggct tgcttaaatt aaccagcggc acaactctag
     8341 gcaagactga atggacacaa accgctgaac ccgacaaaat caaaacccct tatctcgatg
     8401 attttgtcgc aaaacaagtg agcttagacc agtctggaaa taaactgaac taccgtctct
     8461 attcgccttt gcaaaaaaat ggtgaaaaat acccgcttgt gattttccta cacggttcag
     8521 ggcaagtcgg ttcggataac cttgctcacc tgctttccag taaaggggcg attgccaccc
     8581 tgccttatgc cccaagtttt gtacttgctc cgcaatacga ccaagtattc gacccatttg
     8641 ataatgccgc caaagggcaa aaaggcggta ttcactggca aacggaaaat cgtatcaatc
     8701 tcgtgttaaa aatgattgat gaaaccctaa aagccaatcc tcaaattgat accacacgca
     8761 tttatatcaa tggcttatct cgaggtgctg aagggggctt aaatctgttg ttggctcgcc
     8821 cgaatttctt tgccggagca ttattaatga gcggtcgtga agcctacacc aacgaatggg
     8881 tggacggcaa tgccaccaaa acgaatttgg cggcaattaa acatataccg atttggtttt
     8941 tccatagtaa agaggacaaa gtctcgccgg taaaaggttc tcgcattaac taccgcattc
     9001 tcaaagatga gttaaatgcc cccaatgtga aatataccga attcactttt gaacaagccg
     9061 gcgacaacgg cattgtcaat aataaccctc ataatacttg ggacgctgtg tataacagcc
     9121 ctgaggtgat tgggtggtta cttcagcaaa aacgccacta aggaggctca ctgtgtttat
     9181 gtatttgtct cacccgttag atcctaaaga tttagcttgg ccgggagaac ctgttgttga
     9241 ggtgactcgc tgcacagacg taggtgaaga aacgccattt agcagtttta tcacgaaact
     9301 accgaatcat tgcggcacac atatggacgc tcctcgccac tttgtgaaag acggtttaag
     9361 tatcaatgaa ttgccgatag agtatttctg ccataaagag gtcgctttaa ttgaaattcc
     9421 caaaggagag gcagaaggga tcaccaaaga agatttattg ccttatgtcg atattctctc
     9481 caaggtgtct tttgcctttt tacgaacggg gtttgagaaa tatagaaccg agaaccctgc
     9541 tatttatcaa aatgaatgcc cctatatttc aaccggtgcc gggcagtatt tatctgatac
     9601 tttcccgaat ttgaaaggag taggcattga tttcttggca ctagggtctc cttcttcccg
     9661 agtgcctgat gcggaaaacc ctaaaaattg ccatcgagcg attttaggct actataccgg
     9721 caggtttacc actgtgattg aagatatgca cttagcggaa ctccctaaaa atgccaacat
     9781 taagcagttt tttaatgcac cgtggcgaat taaagggtta gattccagtc aagtgacttg
     9841 tattgtggaa ttacagcaat aaaccacaga tatattcatt ttaggagagg ctatttacta
     9901 tagtaagcat aactcaatca ttaattgaaa ataattatta tttgatttta atcaagtcat
     9961 tcataactta attttgttat aaatatgacc ttgtttatag cactattttg tttcgataat
    10021 gattataaaa gatacacact ggacatctca acaagcctct ccaaatgctt tcccagaacg
    10081 acaggcactt atgcctattt ggggtgggaa aaatattgaa cgcaatcaat ggcaatcttt
    10141 atggctggaa caagcaccaa atgcgttatt acaggatggt ttagcttatt tccatattcc
    10201 gttttgcgct agtcattgta ttttttgtgg tttttatcgc aatgcttgga aggaaaatta
    10261 tagccagatt tatactgatc gtgtgattag tgaacttcga tatgaatctt cactatggcg
    10321 aggacaaggt aagattcatg ccgtttattt tggtggagga acgccaacag cgttacatac
    10381 agaagattta gtacgattga ttcgagcttg ttatcgttat ttgccactcg ctgaagactg
    10441 tgaatttact attgagggta gaattagcca ttttgatata gataaggcta aggcttgtat
    10501 tgaagcaggc gtgaaccgta tttctattgg tattcagact tttaactccg aaattcgcaa
    10561 acgtttaggg cgcaaacata gtggcgaaga ggctcaaact tatttaaaag ccttatcgga
    10621 attaaatgct gtgattgttg ctgatttaat ttttggcttg ccaaaccaaa cagatgatat
    10681 ctggcaaaac gatattgaaa ttgcgactag tttaccgatc tcaggcttag atatttacgc
    10741 ctttaataat tatcctttcc tgcctattaa tcgcttaatt gaacatggaa aattacctgc
    10801 gcccgcaggg tttgacaccc aaagcttaca ctatgcttat gcagtagaga agttaaaagc
    10861 acaaggttgg cagcaagtga gcaataacca ctttgctttt ccaaatcgag gtgaacgcaa
    10921 tcgctataat actttggtta aatcgaatat gccttgtttg gcatttggct ccggtgcggg
    10981 gggaaatttt ggtgggctga gttaccaagt acaatctgat ttaaagacct acttagattc
    11041 gcctcttgat cagaaaagcc tttctttttt gagtaaacat ggtgaacata aagcactgct
    11101 tggtgtgata caacatagca tggaattggg ttacttagat acaacgcctt ttgaacaaaa
    11161 tgcgaaagct gaaaaattat tgcaacaatg ggaagcgctt gatttactga agcgtgaaaa
    11221 aaatcaagta tatctcaata ccagtggtcg ttactggtca ccaacattaa ttcgtaaact
    11281 aatgttaaca cttcctcaat caagtaagga taacaacatg ataacgccat taactaaaga
    11341 attagaaaat aaattgcgga caaatttaaa agaaaaccca gggcaaattt tagaaatgct
    11401 ggcaggaatg aatcaatgta gcttggaatc ggtaattaac tgtctgccca aagaaatggt
    11461 aatgcaaaca ggtggtgagc gttttgtgga aattatgcag gcaattgctg gttggaatga
    11521 agctgtgact tttattattc atacgcctga tgcgattgca gaggtaactg ctaaattgcc
    11581 acaaggtaaa attgggcgag gtttttataa ttttgaacat ggtgtagatg gaggaattca
    11641 cggtcattta cgctatgaaa attgtgctgc tatttactta cttgatcgcc catttatggg
    11701 aaaaagaacg gtggcgttaa cttttatcaa tcaaagcggt gaggcgatgt ttaagatttt
    11761 tgttgggcgt gatgaacaag gtcaattacg agaaaatcag attcaagcca tgcggaaatt
    11821 aattggagga tgctagtcat gattttggtt tgtggggcaa atgggttgtt aggacgagca
    11881 atctgtgaca aattacctag agagaaaacg atagccgtct tacgaaaaga tgctatggat
    11941 acgtttttca gcgaacgaaa tatagcagta gaaatagcag atttattaga tttggaatcc
    12001 tgcaacgcct tgttacaaaa aacacaaccg gaaatcttga ttacggtagt aggaggaaaa
    12061 aatgaacaag gtattcgtag cgacaaaaca gcaaatatta atttgataaa agcagttgaa
    12121 aaatattcac caactacgaa agtagtttta gttactagtg ttgggtgtgc agaacaatgg
    12181 gatttaatta gcccattagc acagcaagct ttaggtgaag cactaaaagc caagacggaa
    12241 gctgaagctt atttacagca aacagcatta aattggctga ttattcgacc cggtgggtta
    12301 aataatgatg aagtaaatga tgagtatcag attgtgcgtg atttacctaa tgaacggaaa
    12361 atgtatgtaa gccgtaaatc tgtcgcaaca ggcatagtgc gtttactgga tagtacggaa
    12421 aatcatcaaa tcttctctat tattaatagg ggatagtata tttcaacgaa ggcaagcggg
    12481 catattttat ggttattttg caactataaa acagaccgct tgtgagatct ttttctattt
    12541 tattgagaac tggatgccgc attcatctgc aagtagcgaa gcaccttttt ctgggtagct
    12601 tcgtccatat cggtaaaacc gaccattccg ttaaatactg caatccattc gtttgcatca
    12661 tgcattttag gatcacgttg tttatggcac acgctgcatt ctgttttata ggtatttttg
    12721 gtgttcgccc aaaagttagt gagatcttgg gtaaattcgg cattttccac ccacacgttc
    12781 attttcactt tttgccatac caagccggtg ttcggatctt ccttgctctc tacaatctct
    12841 aacagtgggt tgttgctgat aaaagatttc tcaaataccg catcggtaat atttttactg
    12901 aaagaatgat accaaatccg cccgaaacct ttgctttttc gccataaatt cagctcaatt
    12961 tcagcggctt ttgcggttgt ttgcaccaat ttaatttctg ctccggcttc tagctgcccg
    13021 attttctgtg tcaaattttc atcggcaaat aaagggattg tttccgtggt gtaactgttt
    13081 gaaccggcaa aacaaaatgt tggcatgatg aatgccaaga aacagaaagc gattttcgat
    13141 aatgatttca tcataaaccc cacaaattag atgagaaatt aggttatatg ttacacaaat
    13201 tgagcaaaaa agcgttgatt tacatcataa aactgatttt atgtcgattt cttaattttt
    13261 tgcaaaaaaa tcccaaaaaa tgactgctta caagctataa taaccagtat ttttcgacca
    13321 tttttcaaat tcaagagaaa ataaaatgag tacaaaattc aacgtaaaaa cctttcaagg
    13381 aatgatttta gccctgcaag actactgggc aagcaaaggt tgcaccattg tgcagccgtt
    13441 cgatttagaa gtgggggcag gcacctcgca cccaatgacc tgcctgcgtg cgcttggccc
    13501 tgagccaatg gcgtttgcct atgtgcaacc atctcgccgc ccgacagacg gtcgctacgg
    13561 cgaaaatccg aaccgtttac agcactacta ccagttccaa gtggtgatta aaccttcgcc
    13621 ggataacatt caagaacttt acctcgacag cctgaaaatg ctcggtttcg acccaaccca
    13681 aaacgacatt cgttttgtgg aagacaactg ggaaaaccca acgcttgggg cgtggggctt
    13741 aggttgggaa gtgtggctga acggaatgga agtgacccaa ttcacctact tccagcaagt
    13801 cggcggcttg gaatgtaaac cggtgacagg cgaaatcacc tacggcttag agcgtttggc
    13861 gatgtacatt caaggcgtgg acagcgtgta cgacctcgtg tggtctgacg gcgaactcgg
    13921 taaaaccacc tacggcgacg tattccacca aaacgaagtg gagcaatcca cctacaactt
    13981 tgaatacgct gatgtggact tcctgttcca atgcttcgag cagtacgaaa aagaagccca
    14041 atacctgtta ggcctagaaa aaccattgcc attgccggca tacgaacgca ttttaaaagc
    14101 cgctcacagc tttaacttat tagatgctcg taaagcgatc tcggtaactg aacgccaacg
    14161 ctacattcta cgcattcgtg ccttaaccaa aggcgttgct gaagcgtact atgccagccg
    14221 tgaagcgttg gggttcccgg ggtgtaaaaa ataatcgtag ggacgccacg cttggcgtcc
    14281 gtcaataaat tacaaaacgg acacgaagca tcgtgtccct acaaggattt acgatgaaac
    14341 cgattttata cttcgccgat tggtgtccgg ataccgcccc atttgtggca gaactagacc
    14401 gcttgggcat tgaatatgag ccgtgcgaca tcaccaaagg aggctcaaca cttaaaccat
    14461 ttttgaaact gcgagacacg cattctgcct ttgaccacgc caaagccaac ggctatattg
    14521 gcattccggc attgctgatc gaaggcgaaa aagtcgtgct ggatttggct gaattagagg
    14581 gtattttcgg ctaacaagcg gttgaatttg gcggaaatgt tgcaaaggag ccaataatga
    14641 agacagtaat agcagataat tcggctgaat ttgtgaatga aatttcacaa cttattcaat
    14701 cgagtaagca acgaatgacc gttgcggtta atgcagaatt aaccttgctt tattggcata
    14761 tcggaaaacg gatcaatgac tatattttgc agggtgaacg tgcggaatat gggcaagaag
    14821 tggtgaaaaa tcttgctcaa agtctgacgg agcaatttgg taaaggttgg agtaaacgcc
    14881 atttaaatta tacaatgcaa tttgctacaa ctttccctaa tttggaaatt gtgcacgcac
    14941 tgcgtgcaca attaagctgg acacatttta agcagattat tcatattgat gatccaacaa
    15001 agcgagggtt ctatgcaaca atggctgcac aggagcgttg gagtacaagg acattagaag
    15061 atcgcattgg ctcattattg tttgaacgca cggcaatttc caaaaagccc gatgaaacca
    15121 ttattgctga attgagtttg ctacgtgaaa aaggcgaata taatcagtca atggtgttga
    15181 aagatcccta tattttggat tttctcgacc ttaacgaccg ttatatggaa cgtgatctcg
    15241 aagatgcgat tctacgagag atcgaacagt ttttactgga acttggggcg ggttttacct
    15301 ttgtcgcccg ccaaaaaagg attcagattg ataatgatga tttctatatc gatctgctgt
    15361 tttataaccg taaactcaaa cgcctgattg cgattgaact aaaaaccgaa agcttcaaac
    15421 attcccacaa aagtcaaatg gaactctatt tggcgtggct ggcgaaatac gagcaagaag
    15481 cagacgaaaa cccaccgctt ggaatgattc tctgcaccgg taaaaagcag gagcaagtgg
    15541 aattgttgga tttgaaaaat tccgatattc atattgcgga atatatgacc gtgttgccga
    15601 gtaaagcggt attggaacaa cggttgcatt tggcggtgga aagggcgaaa gagcggtttt
    15661 tactaaaata gcaagcggtt aaaatcagcg gaaatgttgc aaaatgaaag tatgatggaa
    15721 acgatttggt tgcatattcc gttggtgggt ggttagagat tttcaaatct cccccctccc
    15781 cctctttggc taaagagggg gcgatcattt agtgagtaat tttaattcat ctgactattt
    15841 acaatcttaa tgaagaaaga tgaattataa atttacgaag atcaaattcc cctttttagc
    15901 aaagaggggc taggggagat ttggcagaag tgaaaacgta gtgagagatt gattagtcta
    15961 gtactttttt gcaagttaat cataaagttg ctctcatttc ttgataagta caataaaagc
    16021 aaagaaaagg atataataaa ggaaatatat gtcaattaaa aaattattat ctacaactat
    16081 agatcaactt gagaatataa tacaagtatc gggcgaaagt ttcgaaaaaa ttacaagtga
    16141 cttagcagaa aaagcaaaag aattaaattc agaatataat attaaatgtg aaaaattggg
    16201 atacgccata acattatttg aaaaaaactc ggaaatagaa aaacgctaca tatcattatt
    16261 atctgacttt gatatggata caagtataaa aggatttgaa aaattgtctc tactaatgaa
    16321 tggcaagaat gataatgcta gaaaagaagc tgaagaacat tttaatgaat tacaaaatgg
    16381 gctattagaa gctcaagatt ataaaaaaga tttagacatc aaaattagga aattagctag
    16441 agagctttat aatgaaaata tagcacaatt agaaatagaa gaaatcaaag aacatttata
    16501 taaaaattgg taatttaaac aatgacaaca caaaacttcc ttgccgagat cggcacagaa
    16561 gagctgccac cgaaggcact caaaaaatta gcgaccgcat ttgcggagaa tgtagaaaac
    16621 gaattaaacc aagcaggtct ttcgtttgag aaagtggaat ggtttgctgc tcctcgccgt
    16681 ttggcggtga aggtgttgag ccttgcggaa agccagccga gtaaagaggt tgagaaacga
    16741 gggccggcgg tgtcggcagc gtttgatgcc gaaggcaagc cgactaaggc agcggaaggc
    16801 tgggcgaagg gctgcgggat taccgtagag caagctgagc gtattgccac cgacaaaggc
    16861 gaatggttgg tgcatcgtgc cgtgattgaa ggtcagccga ctaaaaatct gttggtcgat
    16921 attatcgcca aatcgctggc gaacttgccg attccaaaaa cgatgcgttg gggcgataaa
    16981 accgagcagt tcgtccgccc tgtgcatacc gtgacacttt tattcggggc ggagttgatc
    17041 gaaggtgaga tcttaggcgt gaaaagcggc cgtactattc gtggtcaccg tttcttaggt
    17101 gaacgtgagt tccaaattga gaacgccgat caatatccgc aactgttgaa agatcgtgga
    17161 tctgtggtag cagatttcaa tgagcgtaaa gccttaattc ttgcaaaatc acaggaaaaa
    17221 gcaaccgctt tgggtggcgt tgccgatatt gaagaagatt tgctggacga agtgacctcg
    17281 ttggtggaat acccgaacgt actcaccgcc aagtttgaag agcgtttcct tgctgtgccg
    17341 gcggaagcct tagtttacac catgaaaggc gaccaaaaat acttcccgat ttattcaaaa
    17401 gacggcaaat tgttaccgca ctttattttt gtgtcgaaca tcaatccgga agacccaagc
    17461 aaaatcatcg agggtaacga aaaagtggtt cgcccacgtt tgaccgatgc ggagttcttc
    17521 ttcaaaaccg acttaaaaca gaagttggaa gaccaactgc cacgccttga aaccgtgttg
    17581 ttccagcaac agcttggcac attgcgtgat aaaaccgctc gcattgaagc gttggcaggt
    17641 gaaattgcga agcaaatcgg ggcagatgaa accaaagcga aacgtgcagg tctcctctca
    17701 aaatgtgacc tgatgaccaa tatggtgttt gaatttactg atacccaagg cgtgatgggt
    17761 atgcactatg cccgccacga cggtgaagat gaagaagtgg cggtggcgtt aaacgagcag
    17821 tatatgccac gttttgctgg cgataacttg ccaaattcat tggtggcttg ctcggtggcg
    17881 ttggcggaca aatttgacac gctaacaggg attttcggca ttggtcaagc cccgaaaggc
    17941 agtgccgacc cgttcgccct acgccgtgcg gcacttggct cgttgcggat tattgtggag
    18001 aaaaatttac cgcttgattt aaccgattta gtggcgaaat ctgctcaatt atttggcgat
    18061 aaactcacca acaaagacgt ggttgaggac gtggtggact ttatgctcgg ccgcttccgt
    18121 gcgtggtatg agagcgaagg cattgcggtg gacgtgatcc aagccgttct cgcccgccgt
    18181 ccgaccaagc ctgccgactt cgatgcccgt gtgcgtgccg tgtctcactt ccgcaccctt
    18241 gacagtgccg aagccttagc cgcagcgaat aaacgggtga gtaacattct tgccaaagcc
    18301 gatattgcaa ttggcgacat tgatgtttca gcttgcgtag agccagcaga aaaagcatta
    18361 gccgaggcgg ttattgcgtt gaaagccgaa gttcaaccgc tgattgcaca gggcgactac
    18421 accgctgtgc tggataaatt agcgaacctc cgccaaccgg ttgatgcctt ctttgacgga
    18481 gtaatggtaa atgcagaaga ccaaaaactg cgtcaaaacc gcctcgccat tttaagcacg
    18541 ctacaaggct tgttcctgca agtggcggat atttcgctgt tgcaataaca ataagtttgc
    18601 aataattgca aaattttaat gaaaatagac cgcttgcagt aattgtgatc tgcaagcggt
    18661 cttttttgct tgaaatttta ccaaaggcgg gattatttaa gttttggttt attcaccata
    18721 atctcgatga cttggcggtc tgtgtattgc atactacgag aggcaatgct gcataagtta
    18781 ttaattgaac gatcaatatc gtgttcgaca attccttcgt tgcctgttac ttggctatta
    18841 tccatagaca tcagaatgga tttatagctt gatgttacgc tggtggagac tttcatcgca
    18901 caactgtttg aagcaccatc acagataata ccgctaatat cgccgatcat actactaatt
    18961 gccatactga tattctcaaa tttccctgtg agcagccacg ctatgccggc acagcttccc
    19021 atagccgcgg ttgttacggc acagagtgca gataatttcg gtaacttgct gtgaatataa
    19081 attgccatga ggtgtgataa aaagagtgct ctaatgcgtt gctcatcagt gacatttaaa
    19141 tggcgggcaa cgacaacaat cggcatagtt gctgtaattc cttgattacc tgaacccgaa
    19201 ttgctcatag caggtaaact tgcaccgccc attctagcat cagaggcaga ggtggtttct
    19261 ataacaatgc gattaagcaa atcatcactg attagaccta gaccaatctg tttttgcaat
    19321 gtccttccga tatgtagccc ataatcggca cgtaatcctt cttgtgagag tgcggaattt
    19381 aattgtgctg cttgctcaat aaagcgaatt ttttccaatt cgatttgcat agaaaaatta
    19441 aatatatctt ttgccgaaag tgaagcaaag atctcagtag tattatcgtt attgacggca
    19501 caaggtttgc ttaaaatagt ttgcccgttt ttttcaatgt aaatgacatt ggtatggtgt
    19561 tcagcaatac gaacacatac tcgattcgct tggtgaaata gtgttgcttc agaatataga
    19621 atatgttctg tttcgaaaat agagacagac actttatcgg tatttaacat agctttagct
    19681 tgcttaacct gttctggcgt aatatttttt aatacttcta atccaccatc aggctcccct
    19741 ccgattgctc caatagctgc cgccataggc aatccgacgg ttgcagttcc cggtactgct
    19801 actcccatcc catttttcat caagttaggg gaaacttttg cctcaatacg ttctggtaaa
    19861 tgacctaaat attggcgtgc aatggcggat gcaagggcga gagaaatagg ttctgtacag
    19921 cctaatgcag ggacaacttc atggttgact gcatgtaaaa tggattgtac taatttttcg
    19981 cagtgaatat tcatagataa aaccttatta ctctaaaaat gtgaggaatg gagaaataca
    20041 taataaaatg ccggtaatga taataatatt gagtgctagc cctttatatt tgaataatgc
    20101 aggcacttta tagactaaat aggccggaat caagcaccca actaagccaa aaataggact
    20161 acagattgag gtaaagctta aaaccggtgc atttaataca atcgcactcc aagccagcag
    20221 aatggaaaat aacataatcc ctttctgcac ataattagga ttgatttttt cagccgggaa
    20281 ttttcttaat aataggttca tcacaatgcc ttgagtggct tctctaaaac ctaaatatac
    20341 cccgaaaaag gctgtcataa cggcaaaaat atttaatgca acacctacat aggttgccca
    20401 actaccaggg aaaaattggg ctgcaattgc taatgcggaa acattttgct cgtatgcttt
    20461 gagcgcttct tctctcccca ttgcaagtgt aaaagagaca gcgtaaaaaa aaacggtaat
    20521 aaataagata gcaaatgcaa tattcatcgc tcgtagggct ttatagcgcg caacttcacg
    20581 agactgttct ttagcacggt aagaaattac cattgggctg agagtttgca agaagagtat
    20641 agaggttagg gtgaaaggaa gggtaatgat ggcatctttt ataagtttgc cgaaaggagg
    20701 cattgcaccg atattatgga gttgccacat tccaatcatt gcaagcccta aggcggcaac
    20761 gacaaatagc ttagttaata ccataaatgt agatatttta aacagtagct tttcgcctcg
    20821 agaagataag gcaactaata tacagattag cactaagcca taaaatggat tatcagagag
    20881 tagtgtattg gtaatgccga aggtaagaag ataggaggca ctgtcgtttg taattgcggt
    20941 agaataaaca aacatccaaa tcactaacat aataaaataa agtacaccta aaaagattcc
    21001 ccagtttttg cccaggtagc cactaataac ggtggggtaa tctttgcatt ccggagattc
    21061 tgctaaagta ttaatgaaca gacgctgaaa aaggtacatc gccgggtatc cgataataga
    21121 agaaagtaga aaaacccaca tgcccataag tcctacttgt accggtaaaa agacgatgcc
    21181 tgccccgata gccataccaa tactcataat gatccagccg aagtcggtag aatcaaattt
    21241 tgttgcttgt ttaaattcgg caggcgagag tttttgagta tccatagagt ctccttaaat
    21301 cgtaacagta taattaagtg ttatttttga attctcttaa atgtttataa attgcgtggc
    21361 tggttaggga gagtttttct gccacaatag gtactgcctc ttttagctca aagatgccat
    21421 tttcaaacaa atagaagata atggatttct tatagagttt tgaatgtttg gtagtgtgtt
    21481 gctcaatgtg agtaactgct tttagaaagg tttcttcaat aagttctttt gggtgagtaa
    21541 taaagttttc acttttataa tgaggcggaa taggatcgta attcataaaa gagctaacgg
    21601 ttttatctaa tggtgtcgat aaatttaaat taatacaaaa taatccgata ggtttgccct
    21661 catgcccgat aataatatgc gtggtggact taactaagtt accgttattt aaccgtgaaa
    21721 agtaaaccag ctcagtatta gattgatctt tttggtaaca ttttagtaac tgtaatcctt
    21781 tatctgtaat aggcgaacct atttttcggt tagtatgatg tccgttaatg attttaataa
    21841 cggatttttc ataggcattc aatgaatgaa taaccacctc acagaattct cctaataacc
    21901 ctgctattgc ttcacttaat gagaaataag acagcataat ttctttgtct a
//
LOCUS       DANLXB010000012        21678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLXB010000012 DANLXB010000000
VERSION     DANLXB010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            8..214
                     /locus_tag="PXD41_000305"
     CDS             8..214
                     /locus_tag="PXD41_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6287872.1"
                     /translation="MEKSKWGEISRLAKAIDVAIPIVSFWVNGKRQVPAKRCPEIEKF
                     TEGKVTCEELRPDVDWAVLRNSGK"
     gene            263..1024
                     /locus_tag="PXD41_000306"
     CDS             263..1024
                     /locus_tag="PXD41_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL6287873.1"
                     /translation="MKSQSLLPITAQNASGAEVKISSIEIAELCEKQHKNVIVDIRKM
                     LAELKLNSADFSAQYQTKDGRMQPCYFLPKRETMILVSGYRIDLRAKIIDRLDELEKQ
                     HQPSIPKNYPEALRMAAELAEQNQVLLLEKQQTTAENHALKSYFEPGLTPAQFVKGLN
                     GVNSNKINDYLRSRGWLYKDKHCWRVFSHVRDKYLTESFKRIEVDPVERIEMATYKPI
                     LLEKGAVKIFEAYLQGKLPMKADWNGKYYHSKVAV"
     gene            1021..1812
                     /locus_tag="PXD41_000307"
     CDS             1021..1812
                     /locus_tag="PXD41_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6287874.1"
                     /translation="MSMLLMVKAMNCTVGNSARKLVLLKLADNANDDGVCFPSYQFIA
                     DKCEMSKRSAISHIDELIKMGYVSKKSRKNKDGSSSNLYQLHLDAPSEKSALGGENFA
                     PGGSENSAPITSHSINQSINHNTSEQNSDGVDKKSKYRFSDNDMAVAKWIFKRVKQLA
                     PQTKESYLPNWANEVRLMVERDKHTHQEICSLFKFATEHHFWGRNILSVVSLRAKWDR
                     LNLERQSSLRPNNIHSATGNGDIQDTTGFSKGLVVDVGGGTKWEF"
     gene            1800..2435
                     /locus_tag="PXD41_000308"
     CDS             1800..2435
                     /locus_tag="PXD41_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6287875.1"
                     /translation="MGILATTTQNQVLPVEIVEQAEVETTKIFNRLKATHLGWRANIK
                     SQAEYDNARREWVRLLIENRLTPKEVERGLKIADTDKNPYLPSFGQFLEWCKSIDYAE
                     LGLPDMDQFLKRLNHFSAFGFTEIDNFKFRSNAEYWLLTDLYERNRKHSWKDETLRNQ
                     AEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            2432..3004
                     /locus_tag="PXD41_000309"
     CDS             2432..3004
                     /locus_tag="PXD41_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6287876.1"
                     /translation="MTDFDKDTYQTPNYVRNWLNHRYAWFHIDGCSNGKNALYSHWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILECVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTDEEVKGNSKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            3074..4102
                     /locus_tag="PXD41_000310"
     CDS             3074..4102
                     /locus_tag="PXD41_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL6287877.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSLAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAEFAKSAKVRSTLNQRDKYSNDLPYTRFVKSIQTCQC
                     RDGKYCHHEKVFVENEKGAVQLCWYHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSSAIEFADLVLFASIKGLLDELDSNALQQFLGYPPLNNSGVSKESNIGFDDV
                     PNARANLKKWAETLKLKVEPEPLAAFMAKPKLQRFEWRKWLQFVKAQPCMCCGQQADD
                     PHHIIGYGGAMGSKQHDLFTLPLCRIHHDELHRNVGKFEQDYGSQLELLIKFLDRAIG
                     LGALEIDG"
     gene            4095..4454
                     /locus_tag="PXD41_000311"
     CDS             4095..4454
                     /locus_tag="PXD41_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL6287878.1"
                     /translation="MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQNK
                     PKFGGQVEIKCDVYFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGN
                     QKGGAVIVRIKERLDVN"
     gene            4444..4803
                     /locus_tag="PXD41_000312"
     CDS             4444..4803
                     /locus_tag="PXD41_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287879.1"
                     /translation="MLIDIKGILRFWGYSANGRLGTEFPCVAAGMKPAVSASNHRILR
                     LTDESIFEIDRCIKQLKEQEPQQYEVLIGRYAARVSDTQIEKVLGISHSTFKRELAQA
                     EMYVLGVVVGLKLALVV"
     gene            4883..5689
                     /locus_tag="PXD41_000313"
     CDS             4883..5689
                     /locus_tag="PXD41_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6287880.1"
                     /translation="MKKLVLVTALSLVLSACGSGGGGGSSASNPNKEATPQSPSKSET
                     KSDTSSQNQVKGALSKVSADLQEQVKALKQINVDGRIIELAQEPIGFIEKDLDNGKKG
                     KAYNLAYSSIGYVLPKDVKTDEYGRVIDERASANDVGIFGLATKFQDLPKSGTAHYSG
                     VSFGANSEGKLTLTADFGDKKVNGSITERKLLSNNQALSSINLLSAPISQTKFAGEEI
                     HFAGIAQANVEGNIVQAPYGGKFMGPKAEEVVGFVADDHNDPYEVFAGQK"
     gene            5853..6200
                     /locus_tag="PXD41_000314"
     CDS             5853..6200
                     /locus_tag="PXD41_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL6287881.1"
                     /translation="MPEKNPDIYTQAWNYFAMFVSNHSSFICAVIIAFFTSITKSFLY
                     GKTDTPKRVFAEAILCAVIAGSLRPILIYFNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGVDDNVN"
     gene            6190..6786
                     /locus_tag="PXD41_000315"
     CDS             6190..6786
                     /locus_tag="PXD41_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL6287882.1"
                     /translation="MLISERKFKQVFPSAIDGIYAEIAKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYKTFEENLNYSATALLATFPKYFTQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTSPDQITDNLALTVQVAVWYWQ
                     SRKLASYGSDILKVTKLINGGTHGLSQRTNYYQRLMVA"
     gene            6787..7137
                     /locus_tag="PXD41_000316"
     CDS             6787..7137
                     /locus_tag="PXD41_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL6287883.1"
                     /translation="MSKYIYLVATILILGLCGWIWQQSKQINTLRAENQTQAQTIEQQ
                     QKANQRLADKLEQERQAVEKIRKSANEMRNKVEIVQNEIKSILAQDSCAKADLPNGVA
                     DSIKRLHRQNNHKH"
     gene            7142..7315
                     /locus_tag="PXD41_000317"
     CDS             7142..7315
                     /locus_tag="PXD41_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287884.1"
                     /translation="MYPPAAYLVPCERTEFSGNTYGDTVEYLIKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            7451..7849
                     /locus_tag="PXD41_000318"
     CDS             7451..7849
                     /locus_tag="PXD41_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287885.1"
                     /translation="MIVKLKLGAVVVLSQVKQATIAYAGSEAYQTAIEQAKKGLLDED
                     KGKPFETVLHFPAVYADEDGQEEICPEQIATTVRSDNVSGEPVAVVLIPDDNVVGELQ
                     SIFIYKTDYAEIFTDNGVKLSAVRTSPAPR"
     gene            7997..8473
                     /locus_tag="PXD41_000319"
     CDS             7997..8473
                     /locus_tag="PXD41_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL6287886.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLNPALGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPADRRAWFQSENERLKFEKEIGELIPASEVALEMS
                     ALAKTVVQALETLPDILERDCGLQPKDLIRVQQVTDDVRDQMALHIQEVTTDTENE"
     gene            8473..10584
                     /locus_tag="PXD41_000320"
     CDS             8473..10584
                     /locus_tag="PXD41_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL6287887.1"
                     /translation="MFASAKEIRRDIANAIKAPRRMRVSEAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPDCSEYFEPSMANMVGYREDSDFVKASEN
                     ARLQCPHCQTLIAPELKRELNIKGVWLKEGQKIDASGQISGESRKSRIASFWLEGPAA
                     AYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTNTDWGLPYLPRSALEQRRSDELMERR
                     EEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQMVGYGENGERWLIDRYNISHTLPDSD
                     GVIEKIDPRIPDDWYILISDVLEKRYPLAHNPNHFMPILAMAVDSGGEDGVTDNAYQF
                     WRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPDNTARSDRHSSARGDVPLYLLQTDYL
                     KDRINNALFRDTVGANYIHFPDWLGEWFFNELTYEERGADGKWRKPGKGNNEAFDLFC
                     YAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIRETPRTAEQAVEIEEKSEKPQP
                     KPTKAKSSWLSGGGRKTGGWL"
     gene            10581..10805
                     /locus_tag="PXD41_000321"
     CDS             10581..10805
                     /locus_tag="PXD41_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287888.1"
                     /translation="MSLYTIDELKQKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQRTKQHRIKYARFI"
     gene            10805..12304
                     /locus_tag="PXD41_000322"
     CDS             10805..12304
                     /locus_tag="PXD41_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL6287889.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGEV
                     HEELAGQIRKLWAEWSVKPDVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSQVAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGMYGK
                     VKTVPADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAARIAAAMTMYI
                     KKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNLETFRNGQLR
                     ATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRPIYREWLKMA
                     IASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLATEGQAIRASG
                     NNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE"
     gene            12316..14277
                     /locus_tag="PXD41_000323"
     CDS             12316..14277
                     /locus_tag="PXD41_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HDL6287890.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVENIDKAIQLMNGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEG
                     ADINSGIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGF
                     TVDGVSTKVRIDAGVNVIDYRGVVKVTNA"
     gene            14351..14674
                     /locus_tag="PXD41_000324"
     CDS             14351..14674
                     /locus_tag="PXD41_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL6287891.1"
                     /translation="MAKNYIQDGNTVRLTATKAITSGDVIVAEDLIAIAVSDAAKNDA
                     VVGLTTGVFSVKAKQADDIKQGAVLYWSETEGATLTAGSNKRLGIAWKDSGTSSNQVD
                     VKINV"
     gene            14667..14969
                     /locus_tag="PXD41_000325"
     CDS             14667..14969
                     /locus_tag="PXD41_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287892.1"
                     /translation="MSSPFEQAIAAADQTIQQTMMSEWLIGGKPYPATFDEAPAIFNG
                     LHSTDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
     gene            14973..15497
                     /locus_tag="PXD41_000326"
     CDS             14973..15497
                     /locus_tag="PXD41_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287893.1"
                     /translation="MGSQVTGLKELQASLKKIARQTVPKAAAQAIRTVGRQAMNKAVK
                     SVAAEIGVNQKTIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRVLERKSNRLSPTKGS
                     IRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQPLTQAFDRELKNYPE
                     QVQAELAKQIAGKL"
     gene            15494..15889
                     /locus_tag="PXD41_000327"
     CDS             15494..15889
                     /locus_tag="PXD41_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287894.1"
                     /translation="MKIHTKIRKEVLELLQTKLPEIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            15917..16558
                     /locus_tag="PXD41_000328"
     CDS             15917..16558
                     /locus_tag="PXD41_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287895.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            16642..17043
                     /locus_tag="PXD41_000329"
     CDS             16642..17043
                     /locus_tag="PXD41_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287896.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGVLLFNPLDINDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            17088..17318
                     /locus_tag="PXD41_000330"
     CDS             17088..17318
                     /locus_tag="PXD41_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL6287897.1"
                     /translation="MPERHFAEYRLFYQEQPFGLWRDDYRTAQLAHLTAMFNRDPKGK
                     APKLAEFMPFFNRTDEVEEIEDDGVADYLAKR"
     gene            17381..17608
                     /locus_tag="PXD41_000331"
     CDS             17381..17608
                     /locus_tag="PXD41_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287898.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVEEMKNNRQI"
     gene            17662..21228
                     /locus_tag="PXD41_000332"
     CDS             17662..21228
                     /locus_tag="PXD41_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL6287899.1"
                     /translation="MSSSNRLTITLDVENSKLLAGFAQSDTVANKFARSFIVNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESESQHARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDVAKL
                     TETVAKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPSVIQAIAKGLG
                     ITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQNLSTAAEKWVG
                     EMDSTVGVSQKAVAVLNALNANFDTVAKTVLVAGGAFALFKGYMNVRPFIESRAAIYE
                     NQKAIIAENQARQQAMAIRQQELVGLSQQTALKLEQTLQTYNQNKAELEAIAVKQQKI
                     TKEREEIAVAIQAAATRSERLALSAELQALDQKEITLGQQKIAVERQQIAAKQALKVA
                     YAENAVAQSAMSAGMITATTTTRAMNGVLAAARAELNLLKAAALSNPLMTLAMVATTA
                     GTALWGFFESQKAAREEALRYADSLDSVRVNIEKMTKAQTDAEMVKLSRSIKEQETAL
                     ANLKQRQAELTREIEQGATVYEDAFAGTVRVTMSAEELAKKQEELTLVTADAEKAQKT
                     LNSSLEAQEALKAHIPIANLREEFVKLYPHIDESQIKVDGLNIAIGNFTVKSPEMVIA
                     TNNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQIERNNAIGSA
                     KGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKGKGGKTKAEKEAEK
                     AAKKQQSYQNQVAEMTNRLAGLKANASDIAIFGQVSDYQEVRKLTEDIAINAEKYKGY
                     GEQGVARLKELASQLESAQQQVAISQFAYNGGEKLKAMEFELTLLGKTRQEQELMQYN
                     HELDLEAARLKIGMADENIAKLDQEIVKLKERRAEIQAQAEQARGSFKQGMLDGLNNI
                     EADVSNVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDLSKMIIKMMLF
                     NAIKQGATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGDGGKYTPAGIVHKGEYVITK
                     EATARLGLDYLNYLNYGKRGFSSGGGVAVPRVPSSSYQPKSAQSNISVQVINNGEPVD
                     AKVSQKQQGDQMQITVELMREIARQEANGMIQNNFRAGGVFA"
     gene            21228..21557
                     /locus_tag="PXD41_000333"
     CDS             21228..21557
                     /locus_tag="PXD41_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6287900.1"
                     /translation="METLKWCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLNNLLRAY
                     TGTIKVKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFS
                     VTFKEVP"
     gene            21557..>21678
                     /locus_tag="PXD41_000334"
     CDS             21557..>21678
                     /locus_tag="PXD41_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6287901.1"
                     /translation="MPVSISNQMKLDLAKLEQNAMLDLYEVDLRTLKDKSGNAGS"
BASE COUNT         6827 a         4416 c         5082 g         5353 t
ORIGIN      
        1 agaatacata gaaaaatcta agtgggggga aatctctcga ttagctaaag ccatcgatgt
       61 agcaattcca atagtttcat tttgggtaaa cggcaaacgc caagtaccgg caaagcgttg
      121 cccggaaatt gaaaaattta cagaagggaa agtaacttgt gaagagctac gccctgatgt
      181 tgattgggca gttttacgaa attcaggcaa ataaaaaacc accgctggaa cggtggctaa
      241 ttacaaccta aggaggttta ttttgaaatc ccaatcatta ttaccgataa ccgcacaaaa
      301 tgcaagcggt gcggaagtca aaatcagcag tattgaaatt gcagagttat gcgaaaaaca
      361 acataagaac gttattgtag atattcgcaa gatgttagct gagctgaaat tgaactcggc
      421 tgatttttca gcccagtatc aaaccaaaga cggcagaatg caaccctgct actttcttcc
      481 aaaacgagaa acaatgattt tagtttccgg ctatcgcatt gatctgagag ccaaaatcat
      541 tgaccgctta gatgagttag aaaagcaaca tcagccctct attccgaaaa attaccccga
      601 ggctctgcga atggcagcgg agttggcgga acaaaaccaa gttttattgt tggaaaaaca
      661 gcagactacc gcagaaaacc acgccttgaa atcctacttt gaaccgggtt tgacccctgc
      721 tcagtttgta aaagggctga atggcgtaaa tagtaacaag ataaatgatt atttacgtag
      781 tcgaggctgg ttatacaaag acaagcattg ctggcgggtg tttagccacg ttcgggataa
      841 atatctgacg gagtcattta agagaattga agttgatcct gttgaacgta ttgagatggc
      901 cacctacaag ccaattttgc ttgagaaagg tgctgttaag atttttgagg cttatttaca
      961 aggtaagtta ccaatgaaag ccgattggaa cggcaagtat tatcacagta aggtggcggt
     1021 atgagtatgt tattaatggt taaggcgatg aattgtacgg tgggaaattc tgcccgtaaa
     1081 ttagtgctgt taaaactcgc tgataacgca aatgatgatg gtgtttgctt tcctagttat
     1141 caatttattg cagataagtg tgaaatgtct aaacgcagtg ctattagcca tattgatgaa
     1201 ttaatcaaaa tgggatatgt gagcaaaaaa tcacgcaaaa acaaagatgg gtctagttca
     1261 aatttatatc aattacacct tgatgcccct agtgaaaaat ctgcactagg gggtgaaaat
     1321 tttgcaccag ggggtagtga aaattctgca cccataacca gtcactctat taaccagtca
     1381 attaaccata atacgtccga acaaaattcg gacggggtgg ataaaaaatc aaaatatcgt
     1441 ttttctgata acgatatggc agtggcaaag tggattttta aacgagtgaa acaactagct
     1501 cctcagacca aggagtctta cttgccgaat tgggccaatg aagtccgctt gatggtagaa
     1561 cgtgataaac atactcacca agaaatttgc tcgttgttta aatttgcgac cgaacaccat
     1621 ttttggggca ggaatatcct aagtgttgta tctcttcgag ctaagtggga tcggctaaat
     1681 ctagaaaggc aatcatcatt acgaccaaac aatattcact cagcaacagg caatggtgat
     1741 attcaagaca caacggggtt ttcaaaaggt cttgttgttg atgtaggagg agggacaaaa
     1801 tgggaatttt agctacaacg actcaaaatc aagtattacc tgttgagatt gtggaacaag
     1861 cagaggtgga aacaaccaag attttcaacc gcttgaaagc aactcactta ggctggcgag
     1921 ccaatatcaa gagtcaagcc gaatatgata atgctcgccg tgaatgggtt cgtttgttga
     1981 ttgaaaatcg cttaacgcca aaagaagttg aacgaggttt gaaaattgcg gataccgata
     2041 aaaatcccta tttaccgagc tttggacaat tcctcgaatg gtgtaaatcc attgactacg
     2101 cagaattagg tttgcctgat atggatcaat tcctcaagcg tttaaatcat ttttccgctt
     2161 ttgggtttac tgaaatcgat aattttaagt ttcgttcaaa cgctgaatat tggctcttaa
     2221 ctgaccttta tgaacgaaat cgaaaacata gttggaaaga tgaaacatta cgtaaccaag
     2281 ctgaaaaagc gttagtagag atggcaaaac ggattatgag cggtgaacaa attccacctc
     2341 ctaagccagt aatcgaagag aaaaagaaag tgccaataga tccacgcatt cagcgaattt
     2401 tggacgagaa gaaacaagca ggagcaatgc aatgacagat tttgataaag acacttacca
     2461 aacacctaat tatgtgcgta attggctaaa tcatcgctat gcgtggtttc acattgacgg
     2521 ttgttctaac ggcaaaaacg cattgtatag ccactggatt ggcaaagcgg cagagggctt
     2581 agacgaagac acactaagtg gtcagattgc cgaggatttc ttggcagaga acttgctcga
     2641 tgtgatcttg gaatgtgtgg cagattgggg cgaattactg cgtattttcg tgaatccgcc
     2701 atacagcaat ccactgccgt ttgtacaacg ggcggcagag ctgaaaaaag ccggccatat
     2761 tgtggtaatg cttttaccgg cagataaatc tacccgttgg tatcaggtta tccaagaaaa
     2821 cgctagtgag gtgatcgaca ttatcggcgg acgtattaat ttcatcaatc cgctcacaga
     2881 cgaggaagta aaaggcaaca gcaaaggctc gatggtggcg gtgttcgatc cgtttgtgga
     2941 gggaatagtt acccgtcaaa tgccgttgga taagattaag gagctgggcg gctatgaaaa
     3001 ataacgaagg ctgggacggt ttagataagg cgtatcattg ccttagccgc aacaaaaaga
     3061 aatgggggca ataatggcgg aaggtttgct acttacccct tactttcaaa ccgaagtggg
     3121 tattgtgttt tacaaagtgc ctaaagatgt ttctcttgct gctttcggtg agcggacttt
     3181 gttgcaacct gcaccgaccg atttagcaac ggttaaatca ggcaaggttg caaatttttc
     3241 ggcaaattcg accgcttgta aagagttggc agagtttgct aaatcggcaa aagttcgctc
     3301 aacgctaaat cagcgtgaca aatacagtaa tgatttgcct tatacccggt ttgtaaagtc
     3361 aattcagacg tgccaatgcc gagatggtaa atactgccac cacgaaaaag tattcgtgga
     3421 gaatgaaaaa ggtgcggtac agctttgttg gtatcacgac aaaatgcgaa tggacggtga
     3481 aatcccgaat gaaaaattag aagcactagc ggatgaaaac tgggaaaaat ttatcgccca
     3541 acaaatccgc ttaaccttac gcaaaacgca atcttctgcc attgaatttg cggacttagt
     3601 gttgtttgcg agtatcaaag gtttgcttga tgaattagac agcaacgcat tacagcagtt
     3661 tctcggctat ccaccactga ataatagcgg tgtgagcaaa gaaagtaata tcggatttga
     3721 tgatgtgccg aatgctcgag ccaacctcaa aaagtgggct gaaacgttaa aactgaaagt
     3781 cgagccggag ccgttggcgg catttatggc aaaaccgaaa ttacagcggt tcgagtggcg
     3841 gaagtggttg cagtttgtaa aagcacagcc ttgtatgtgt tgcggacaac aagcagacga
     3901 cccacatcat attatcggct atggcggagc gatggggagc aaacagcacg atttattcac
     3961 tctgccccta tgccgtattc atcacgatga attgcatcgc aatgtgggta aatttgagca
     4021 agattacggc tcgcaattag agttgttgat taagttttta gaccgagcga taggtttggg
     4081 ggcgttagaa attgatggtt gaattggtgc tgccctatcc gccaagtgta aacgactatt
     4141 ggcggtgggt aagcaaaaca agacgagtgg tgtgtaaacg aggcaaagac tatcaatggg
     4201 caacatttct cgcagcacag aataaaccta aatttggcgg acaggttgaa attaagtgcg
     4261 atgtttactt ccctgataac cgagatcggg atttggataa cttaggcaaa tgtattttag
     4321 attcgttggt atatagcaaa gtgattgttg atgactcccg gcactatgtc aaaaagctga
     4381 catttgagga caagggcaat caaaaaggcg gtgcggtaat tgtaaggatt aaggagagac
     4441 tagatgttaa ttgatattaa aggtatttta cggttttggg gctattccgc caacggcaga
     4501 cttggtacgg aatttccctg tgtggcggca gggatgaaac ctgctgtatc ggcaagcaac
     4561 caccgcatat tacgtttaac tgacgaatcc atttttgaaa ttgaccgctg tatcaagcaa
     4621 cttaaagagc aagagcctca gcaatatgag gtgctgattg gtcggtatgc agcaagggta
     4681 tctgatacac aaatcgaaaa agtattaggt atcagtcact ccacctttaa acgagaattg
     4741 gcacaggcgg aaatgtatgt gctgggtgtg gtagttgggt taaaattggc gttggtggtt
     4801 taaataatgt gatctgtatc acaacattaa ttcaataaat gagataaagt atagactctt
     4861 tttacctatg gagattttac caatgaaaaa gttagtttta gttacagcat taagtttagt
     4921 tttatctgct tgcggtagtg gtggaggtgg tggctcatca gcatcaaatc ctaataagga
     4981 agctactcca cagtccccat ctaaaagtga aactaagtca gatacttcat ctcaaaatca
     5041 agtaaaaggt gctttatcta aagtttcggc agatttacaa gagcaagtaa aagcacttaa
     5101 gcaaattaat gttgatggta gaatcattga gttagcccaa gagcctatcg gttttataga
     5161 aaaagattta gataatggca aaaaaggaaa agcctataac ttagcttatt ctagtattgg
     5221 ttatgtgtta cctaaagatg taaaaacgga tgaatatgga cgagtaattg atgagcgagc
     5281 ttctgctaat gatgtcggta tatttggact agcaaccaaa ttccaagatt taccaaaatc
     5341 cggaactgca cactactctg gcgtatcatt tggtgcaaac agtgaaggta aattaacact
     5401 tactgctgat tttggtgaca agaaagtaaa tggctcaatt actgaaagaa agctattatc
     5461 taataaccaa gcattatctt ctattaactt attatctgcc cctatcagtc aaaccaagtt
     5521 tgctggtgaa gaaatacatt ttgccggcat tgctcaagcc aacgtagaag gtaacattgt
     5581 tcaagctcct tatggcggta aatttatggg gccaaaagcg gaagaagttg ttggtttcgt
     5641 tgccgatgat cataatgacc catatgaagt atttgctggt caaaaataat ttttaatgta
     5701 tgattgacaa ggtcgcccta aaagtatagg atttatgcaa tccttgcgat tagtgcaagt
     5761 gcattacgca atactatttt tatagccctg attggttcag ccagtcgggg cttttttgtt
     5821 gccccgaaaa agtggggtgg agtatgaata caatgcctga aaagaaccct gatatatata
     5881 cgcaggcttg gaattatttt gcaatgtttg tcagcaatca tagcagtttt atttgtgctg
     5941 ttatcattgc tttttttacg tctattacca agtcattttt atacggcaaa accgacacac
     6001 caaagcgggt ctttgcagaa gcgattctgt gtgcggtgat tgccggttcg ttgcgtccga
     6061 ttttaatcta ttttaatgct gatgtttcct taattacccc gattggtgcc ggtatcggac
     6121 tactagggac aagtgctatt cgtcaaatga ttttgaaatt cctcaataag aaagcaggag
     6181 ttgatgataa tgttaattag cgaaagaaaa tttaaacaag tattccccag tgcgattgac
     6241 ggaatttatg ccgaaattgc caaacacatt gaaaaagccg gttgcaagac gaaagagcag
     6301 caagcaatgt ttttggctca atgtggcgta gagtgtgctg gttataaaac ctttgaagag
     6361 aatttgaatt attccgctac ggcattatta gccacatttc cgaaatattt tacccaacac
     6421 aatgttgtgc tttatgcccg agataagcgt gcgattgcta atcgggtgta tgcaaatcga
     6481 atgggtaacg gcaatgaaca aagtggcgat ggttggaaat atcgtgggcg tgggctgatc
     6541 cagattactg gtaaagcgaa ttatattgag tttgcgaagt gggaggggtt gccaagcttg
     6601 gtgaccagtc ctgaccaaat cacagataac cttgctctta cggtgcaggt ggcggtatgg
     6661 tattggcaaa gtcgcaaatt agcaagttac ggtagtgaca ttctaaaagt aaccaagctg
     6721 attaacggcg gcactcacgg gctatcacaa cgcacgaact attatcaacg attaatggtg
     6781 gcataaatga gtaaatatat ttatctcgta gccaccattt tgattttggg cttgtgtggt
     6841 tggatttggc agcagtccaa gcagattaat accttaagag ccgaaaacca aacgcaagcc
     6901 caaaccattg agcagcagca aaaagccaat caacggcttg ctgataagct cgaacaagag
     6961 cgacaagcgg tcgaaaaaat ccgaaaaagt gcaaatgaaa tgcgaaacaa agtggagatt
     7021 gttcaaaatg agattaagtc aatccttgcc caagacagtt gtgctaaagc tgatttgcct
     7081 aatggcgttg ctgatagcat taagcggttg cacaggcaga acaatcacaa gcactgaata
     7141 tttgtatccg ccggcggctt accttgtgcc gtgcgagcgg actgaattta gcggcaatac
     7201 atacggcgat acggttgagt atctgataaa agtgatggga gagcgtgatt tgtgtgctaa
     7261 ccaaatcgac cgtatcagag aatggcaagc acaaaccaaa caaggtttta aatagcttgg
     7321 cggattaagc cgctatgaca tatgggagcg taacagctcc cttttttatt gtaccgcatt
     7381 acttagttat gcttttggtt atatcaagac cataactaag caatgtgttc tattaacata
     7441 aggattattt atgattgtga aattgaaatt aggtgcggta gttgtgctat cacaagttaa
     7501 acaagccacc atcgcatacg ctggatcaga ggcataccaa acagctattg agcaagccaa
     7561 gaaaggttta cttgatgaag acaaaggtaa accatttgaa actgttcttc acttccctgc
     7621 tgtgtatgcc gatgaagatg gacaagaaga aatttgccct gaacagattg caactacagt
     7681 acgttcagat aatgtaagtg gtgagcctgt tgcagtggta ttaatcccag atgataacgt
     7741 agttggcgag ttacagtcta ttttcattta taagacagat tatgcagaaa tttttactga
     7801 caatggtgtg aaattaagtg cagtaagaac aagtccagct cctcgttaat tttgtaaaag
     7861 gtactcccga ggggataccc ctttccacgg ggttgcggca gcgtggtttt cggcaatttt
     7921 ttgagtttct aggcatcatc atcttcctat gatgttgctg ttttttaggc ggttttgatt
     7981 tttaggattt gagcaaatgg acaacttatt tgatctaaaa cttaacatca atcagatcgc
     8041 cgaactcaca ggattgcacc gccagacggt atctcagcga gtcgctgggt taaatccagc
     8101 actcggtagt aatagcaaat taaaactcta tgctctgcgt gatttaatcc tcaccgggtt
     8161 ggcggaaaag atgtcggcag atgtcgatag cctatcacct gctgatcgtc gtgcgtggtt
     8221 ccagtcggaa aacgaaagac taaaatttga aaaagaaatt ggcgagctta tcccagcaag
     8281 cgaagtggct cttgaaatgt cagctttagc aaaaacggta gtacaagcct tagaaacctt
     8341 gcctgatatt ttagagcgag actgcggatt gcagcctaaa gatttgatac gagtgcagca
     8401 agtaactgac gatgtacgag accaaatggc attacatatc caagaagtta ccactgacac
     8461 ggagaatgaa taatgtttgc tagtgctaaa gaaattcgac gtgatatagc aaatgccata
     8521 aaagcacctc ggcgaatgag agtgtcagaa gcagtagcgg aatatatgcg tgtaccactt
     8581 ggcggaggca actcggtcaa atgggataag cacaccgccg cctatatgtt agaaccgatg
     8641 gactgcctca atagccgaga atacgatgcg gtgatttttg tcggcccggc acgaacgggt
     8701 aaaaccatcg gcttgattga cggctggata acctactcaa ttatctgcga tccgtctgat
     8761 ttcctgttgg tgcaacttac ccaagagaaa gctagcgaac atagccgaaa acggcttgac
     8821 cgcacattcc gctgttcgcc cgaaattgcc aagcggctaa gcccacgcaa aaacgataac
     8881 aatgtccacg acaagtattt cagagcgggc aacttgctca aaatcggctg gccgtctatc
     8941 aatgtgcttt cttcatcgga ctacaaatat gttgctctga ctgactacga ccgctggccg
     9001 gaagatgtgg acggagaggg cgacggtttc tcgcttgcct caaagcggac gaccaccttt
     9061 atgtcagcag gaatgacttt ggtggagagt tcgcccggta aagatattgt tgatctcaaa
     9121 catatcccga aaagcaccca cgaggctcca ccgactaccg gtattttaag cctctataat
     9181 cgaggtgatc gccgtcggtt ttactggcaa tgccccgact gctccgaata cttcgagccg
     9241 tcaatggcaa atatggtcgg ctaccgtgaa gacagtgatt ttgtcaaagc cagcgaaaac
     9301 gcacggttac aatgccctca ctgccaaacc ctgattgccc ccgaactcaa acgagagcta
     9361 aatatcaagg gcgtatggct caaagagggg caaaaaattg atgcaagcgg tcaaattagt
     9421 ggcgaaagtc gcaaatcccg tattgcctcc ttttggcttg aagggccagc ggcagcctac
     9481 caaacgtggg cgcagctcac ctacaaactg ctcaatgccg aacacgaata tgaaatgact
     9541 ggcagtgagg aaaccctcaa agcggtaaca aataccgact gggggttacc ttacttacca
     9601 cgatctgcat tagaacaacg ccgttctgat gagttgatgg aacgccgaga agaagtagaa
     9661 gagaaaactg taccagctca atgtcgcttt attgtggcgg cggtggacgt acagggcggt
     9721 aaaaaccgcc gatttgtggt gcaaatggtc ggttacggtg aaaatggcga acgctggttg
     9781 attgaccgct ataacatctc acatactttg cccgacagtg atggcgtgat tgaaaaaatt
     9841 gaccctcgta ttcccgatga ttggtacata ctgatttcgg acgtactaga aaaacgctac
     9901 ccacttgccc acaatccaaa ccactttatg ccgattttgg cgatggcggt ggacagtggc
     9961 ggtgaagatg gggtaaccga taacgcctac caattttggc gcaaatgccg ccgagatggc
    10021 tatgcgaaac gagtctattt agtcaaaggc gacagcacca aacggcaaaa gctgattacc
    10081 aaaacttacc ccgacaatac cgcacgaagt gaccgccact cctccgcacg gggcgatgtg
    10141 ccgttgtact tgctccaaac cgactacctc aaagatcgga ttaacaacgc cctgttccgt
    10201 gatacggtgg gggcgaacta catccacttc cccgactggc taggtgaatg gttttttaac
    10261 gaattgacct acgaagaacg aggagcggac ggcaaatggc ggaaaccggg caaaggcaat
    10321 aacgaagcct tcgacctgtt ctgctatgcc cacgccattg caattttacg aggctacgaa
    10381 cgaatcaaat ggggcgatga aaacgatgtg ccaagctggg caaaactgcc cgacatcaac
    10441 cctaatatca ttcgggaaac gccaagaacg gctgaacaag cggtcgaaat tgaagaaaaa
    10501 tccgaaaaac cacaacctaa acccaccaaa gcaaaaagca gttggttaag tggtggcggt
    10561 agaaaaacag gaggctggct atgagccttt acaccataga cgagcttaaa caaaaaatcc
    10621 gcacgcttga tgaaaaaatc gaaaccgccc aaagccaagt gagctttaat ggtcggtcgg
    10681 tttcatatca agtggcggaa ctaaccaaac agcgtgatcg ctatcaaaca atgctggatg
    10741 aacaacttgc ccaaagcggg caacgcacca aacagcatcg aattaaatat gcgaggttta
    10801 tttgatgaac ttcctcgaaa aaaccattgc caccctttcc ccgaaatggg cggcaaatcg
    10861 ctctcgaaat cgctatgtgc taaatgccta tgaggcggca cagcctagcc gaacccataa
    10921 ggcaagccga gagagcaaag gggcaaactc tactgttcgc caaagtgcgg tcagcctacg
    10981 ggaacaagcc cgagccttag accaaaatca cgatattgtg atcggcattc tcgacaaaat
    11041 ggaagagcgg gtgattggct caaaaggcat tcatattgaa ccgcagccgc tgacgttggc
    11101 aggtgaagtc cacgaagaat tagctgggca aatccgaaag ctgtgggcgg aatggtcggt
    11161 gaaacctgat gtgacgggat tatacactcg cccattgcta gaacgaatgc tacttcggac
    11221 ttggctacga gacggcgaag tctttgttca gttggtgaaa ggcaaggtgg cagggttaga
    11281 acacggctca caggttgctt tttcccttga agccttagag ccggattttg tgccaatgca
    11341 atccgatgag gcaaaaaacg gcttggtgca aggcgtgttt ctcaatgcgt ggcggaagcc
    11401 gactgcttac caagtctatt tagacaatcc gcaagaaagc aacggaatgt acggcaaagt
    11461 gaaaaccgtg ccggcagaca atatgttgca cctcgccttt cgcaagcggt tacatcaaat
    11521 tcgtggtgta agtatgttgc acggtgtgat tgtgcgattg gcggatctga aagaatacga
    11581 agagagcgaa cgagttgccg ctcgcattgc cgccgcaatg acgatgtaca ttaaaaaagg
    11641 cgatgcggca ctgtatgatg acgacagtaa cagcgatggc gaacgcctgt ttgatattgc
    11701 ccccggtgcg gtgattgatg atttaaaacc gggtgaagac atcggcttaa tcaattccaa
    11761 ccgcccgaat gtgaatttgg aaactttccg caatggacaa ctgcgagcca ctgccgccgg
    11821 tactcgttcg agctattcca gcatcgcccg agactacaac ggcacttact ctgcacagcg
    11881 acaagagctg gttgaaagtt ttgaaggtta tgcggtgcta caagatgcgt ttgtggcggc
    11941 aatcagccgc ccgatttatc gggaatggct caaaatggca atcgcctcac aagcgatcaa
    12001 actgccgcct gatattgacc aaaactctct ctttaatgcg gtttattcag gtcctgtaat
    12061 gccgtggatt gacccaatca aagaggcgaa tgcgtggaaa gaacgaatta aaggcggttt
    12121 agccaccgaa gggcaagcaa tccgagccag tggcaataac ccagccgaag tcaaacggca
    12181 acgaattgtc gagatcaaag aaaatcaagc cgaagggcta aaatttgata ccgatctcac
    12241 caattacggt gggcaggata aatctttctc caatcaaaaa gatgaaatta acgaagatga
    12301 ataacaggag ggtgcgtgaa aacgtggttc aacattcaag ccaaagcgaa tgacaccgcc
    12361 gaaatctcaa tttttgacga aatcggcttt tggggtgtca ccgcccaaca atttgctaaa
    12421 gacttaaaag cccttggcaa caatttaaaa caaatcaatc tgcatatcca ctcgcccggt
    12481 ggtgatgtgt ttgacggcat tgccatttac aacctgctaa aaaatcaccc tgctaacaag
    12541 accgtctata ttgacggtct tgccgcatca atggctagcg taattgcaat ggcaggtgat
    12601 gaaatcatta tgcctgaaaa cgctatgatg atgatccaca aaccgtgggg cattcaaggc
    12661 ggtgatgcgg atgatatgcg taaatatgcg gatttactgg ataaggttga aagtacactg
    12721 attatggcgt atgtcgccaa aacaggtaaa tacgaaaccg atttggcaga aatgctgaaa
    12781 gaagaaactt ggctcacagg caaagagtgc gtggagcaag gtttcgccga taagttagcc
    12841 gaaccccttg tggcgatggc ttgtatccaa tccaaaaaat tagaggacta cacaaaaatg
    12901 cctgacaaaa tcaaaaatat gctattcgca ccacaaggca acgcaggtgc aaatccaaaa
    12961 catgaacaac ctcaaacacc accacaagcg ggtgaaaatc cgcaaaatgt ggcaaaacct
    13021 gatgcaatgg tggcattagc ccaacgcaat gcaacgatta aagcgacctt tgccgctttc
    13081 ggcacacaat ttgacggctt gctggcagaa tgtttagctg atgtgtcaat gaccgctgag
    13141 caagccaaag acaagctcct tgccaaactg ggcgaaaaca ccaccccaag cgtaccgcaa
    13201 aaccacattc acgcaggtaa cggtaacatc gttggcgaca gcgtgaagca gtcgttaatg
    13261 gctcgtgctg gtcaagatac cgacaaaacc aacgcaagag ataatgccta caatgcaatg
    13321 accttgcgtg agttggctcg tgcctcattg gttgatcgtg gcgtgggtat tgcgggctac
    13381 accccaatgc agatggtcgg tcttgccttt actcattcga gctccgactt cggtcaaatc
    13441 ttgattgatg tggctcataa atccctactc aaaggctggg aaaccgctac cgaaaactac
    13501 gagcagttta ccacccgtgg cactcttact gacttccgac cggcaaaacg agtcggttta
    13561 ggtgagtttg gctacctgcc ggaagtgggc gaaggtgaag aatacaccta cggcacaatc
    13621 ggtgatgaag gtgcatctgt tgcattggcg acttacggac aactgtttag cattacccgt
    13681 caggcgatta tcaatgacga tatgcatctt ttaactaaaa tccctgagaa aatgggtgca
    13741 gcagccaaag cgactattac caaactggtg tttgccttga ttaccggcaa tgcgacagcc
    13801 caagacggta aaaagctgtt tgatgctaca cataaaaaca gcttaacggg tgcggcattg
    13861 aatgtggaaa acattgacaa ggcaatccag ttaatgaatg gctttgtaaa cagccgtggt
    13921 gaaccgctct ctattgagcc agaatttatg ctgttaccaa cctcattgca taccaaagca
    13981 aaacagattc ttggttcgtc aagcgtggaa ggtgcagaca tcaacagcgg tatcattaac
    14041 ccgatccgtg atattgtcag cccgattaaa tcgcctcgct tacaaattgc agatccgaaa
    14101 tcatggtact tgctcaataa agaggcgatt gaagtctctt atctggacgg ggtggatagc
    14161 ccttacatcg agcaacagca cggctttacg gtggacggtg tttcgaccaa agtccgtatc
    14221 gatgctggtg tgaatgtgat tgactaccgt ggtgtggtga aagtgaccaa cgcttaattt
    14281 aaacaattta aaacctgacc gcacttttaa cagtgcggtt ttttattatc cgaaaaaagg
    14341 aaaaagagat atggctaaaa actatattca agacggcaat accgtgcgtt taactgcaac
    14401 caaagcgatt acttccggcg atgtcattgt ggcggaggat ttaattgcga ttgcggtttc
    14461 tgatgcggca aaaaatgatg cagtagttgg cttaactacc ggtgttttta gcgtaaaagc
    14521 taaacaagca gatgacatca aacaaggtgc agtgttgtac tggtctgaaa cagagggcgc
    14581 aactctcacc gcaggctcaa ataaacgact tggcattgcg tggaaagact ctggcacatc
    14641 atctaatcaa gttgatgtga aaatcaatgt ctagcccgtt tgagcaggca atagctgccg
    14701 ccgatcaaac tattcagcaa actatgatga gtgagtggtt gattggcggc aagccttacc
    14761 ctgcaacttt tgatgaagcc cccgctattt ttaacggttt acactcaacc gatgacagag
    14821 ctattcacgg cacggaacgc acactgaccc tatttcgggc gagtggctac aaaccgagat
    14881 tggacgaccg agtgagcgga aatggcaaga aataccttgt taaatcctat cactttgtcg
    14941 atcagttaat cgtattgcaa ttggagtaaa caatgggttc tcaagtgacc ggtttaaaag
    15001 aactgcaagc ctccctgaaa aaaatagcta ggcaaaccgt acctaaagca gccgctcaag
    15061 caatccgtac tgttgggcgg caagcaatga ataaggcggt taaatcggtg gcggcagaga
    15121 ttggcgtaaa tcaaaagaca atcaaaggta gagcaaaaat gacggcaaag cccacgccgt
    15181 caagattgca agccacgatt aaggttaatc gatcacatat gccgatgatt cgggtactag
    15241 agcgcaagtc caaccgcctg tcacccacca aaggcagtat tagagttggg aaacacactg
    15301 tacaacgtgg ttttcgccaa cgactcgcca atgggcgaac gcacattatg taccggcaag
    15361 gtcgtaagcg ttacggcatt gatgtagcaa aagtgccgtt atcccaacca cttacacaag
    15421 catttgatcg agaattgaaa aactatcccg aacaagtgca agcggaatta gctaaacaaa
    15481 ttgcggggaa attatgaaaa tccacacaaa aatccgaaaa gaagtccttg aattattaca
    15541 gactaaattg ccggaaattg ataattttta taacgggctg ccaactttta ttgatattga
    15601 ggaggaacaa cttgcagtat cggtttatct cgatgatatc agtctgcaag aaataactgt
    15661 ttgtaataat caatgggacg ccaagctcaa tattacaatc catctgaaat ctaccgagag
    15721 tgcagaagat gaattagacg aatgggcgga aaaaattcgt gaaattatcg atgattatcc
    15781 cgaatttgag catttagagt cagtcgcgct ctctcagtat caatatgagc aagaccagaa
    15841 tcagcgtacg tggcacatgg cgacattaat ctttgatgtt gagtattaaa caaataatct
    15901 ctataggaga cttaaaatgg caaaaacaac aaaagtccaa ggcacgaaat ttagaattag
    15961 cgttggacgt gaggctcaaa aagcaattac cgcaattaac ttaaatactg ctactctaac
    16021 gattgcatcc tcaggctata aaaaaggtga tgcaatcgag cttacaggtt gtggtcaatt
    16081 agatggtatc tacccggtgt tatcagtaac taccgatcag gtaaaattat gcgaagaagt
    16141 gaactggaca ggtaaagatt taccagctaa ttacaccaaa gccaaggcgg cactagtgca
    16201 atactcggag caattctgcg cggtaaaaaa cattgaaaaa tctgatgata ctttgagtac
    16261 cgaagatgta acaacggttt gttcagaggg cacagaaacc gagccgggtg aaattgaatt
    16321 tggttcgatc aaactcagtt tcttccacaa gcctactacc gaaatgcaaa cccgattgcg
    16381 caaactcttt tacgacaaat ccacctttgc ctacaaactg gaactaccgg ataaccatgg
    16441 cacgacctat ggcgaaggct ttattgaggc cggcaacggt ttctcgggcg aagttaaggg
    16501 taagtatgaa ggctctgtat ctattaagcc aagcaaacgc gactacttat tagtttaatt
    16561 gcaaaaaaac cataaaattc gaccgtttgt agaaataaca agcggtcttt ttatatcaga
    16621 attttacaaa aggaacgaac aatgacactg cgtgagaaac tccttgctaa taaaccaaaa
    16681 ttgcaaccta tcgaaatcaa cggcgagacc tactacctgc gtgaagctac tgttggtgat
    16741 atgaacaagc agatttttga aacccgaagc tggctcattc aacaagctga acaagaaaat
    16801 gttgaattac cggcagaaga tgatgaaacc tttgatgagg ctctcaaccg ttttggcgaa
    16861 aaataccgcc ttgctcaatc ggttgcctac cgcttatgtg atgaaaacgg tgtattactg
    16921 tttaatcctc tcgacattaa cgatctgaat gccattgccg aattagacag taaagtgatt
    16981 atcgacttta accaagccgt gtccgcccca aaagactcag cgagcgaaga aagttccaaa
    17041 taaccctttc gctcgcactg ggtaaaacac ttgaagaaat cgaacaaatg cccgaacgcc
    17101 actttgccga atatcggctt ttctaccaag aacagccttt cggcttatgg cgagacgatt
    17161 accgcaccgc ccaacttgcc cacttaaccg caatgttcaa ccgtgatccg aaaggcaaag
    17221 ctccaaaatt agcggagttt atgccgtttt ttaatcggac agatgaggtg gaggaaatag
    17281 aagatgatgg tgtggcagat tatttggcga aaaggtaaag aaaacagctt gaaattcctt
    17341 gctcttggat atatatttcc tcaaagagaa ggagggaagt atgtttgaag cactagaccg
    17401 ttttatgatt aatacgatta aaattgcaat tattgtattt ttggtcgctt gcatctttat
    17461 tagtatgccg aactggtgga tagcttctat cttagtactt ttcccgactg cctatttgct
    17521 tgataaatac tggtggcgaa ataccgaaat gtatcgccgc aaaatggata aattagttga
    17581 agagatgaaa aataatcgtc aaatctaaat taacatcaat tctagcccgc tttatgcggg
    17641 ctttttattt ggggtgaaaa agtgagtagc tcaaacagat taactattac cttagatgta
    17701 gaaaattcta agttactagc tggattcgca caatctgata cagtagcaaa taagtttgct
    17761 cgcagcttca ttgtgaatat ggatcaggct cagcaaaaag cacgtcaatt tgctgataga
    17821 tcgacaaaat atctaaaaaa tattgaacaa gcagcaaata atcttaatag ctctgtatca
    17881 aaagaacgtt tttggcaaat tgcaaatcgg ttgcaattcc cgacaagtaa agtgattagt
    17941 tatgccaata gctacaccga actcggtaat aaactcaaat tagtcaccga aagtgaatcc
    18001 caacacgccc gagcaatggc ggcggtgtat gatatttcgc tcaaaaccgc ccaatctaca
    18061 caggcaacct cttcggttta tcagaccttt gctcaaaatg caaaacagct cggtatttct
    18121 caaaacgatg tggcaaaact aacggaaacg gtggcgaaat cagtggcgat ctctggtgca
    18181 agttcggcaa ccgcttcaaa cgccctagtg caattcagcc aatcgttgtt aatgggtaag
    18241 ctcaaagccc aagaatttaa ctcattgatg acccaaacac cgtctgttat tcaggcgatt
    18301 gccaaagggt taggaattac tactgccgaa cttaaagcaa tggtggataa cggtgagatg
    18361 tcggctgaaa aaatgattga ggggctaaaa aaagcagaga gttatgtaaa cggacagtac
    18421 gccaaaacaa ccactacaat tagtggagca atgcaaaatc tttcaactgc ggctgaaaag
    18481 tgggttggcg aaatggatag taccgttggt gtgtcacaga aagccgttgc cgttctgaat
    18541 gcgttaaatg ctaattttga cacggttgct aaaacggtac ttgtcgccgg tggagccttt
    18601 gctcttttta aaggctatat gaatgtacgc ccatttatcg agtcaagagc ggctatttat
    18661 gaaaatcaaa aagcaattat tgctgaaaat caagcccgcc aacaggcaat ggcgattcgt
    18721 cagcaagagt tagtaggact gtctcaacaa accgctttaa aactggaaca aacattacaa
    18781 acctacaatc aaaataaagc cgaattagag gcaattgcag ttaaacagca gaaaattaca
    18841 aaagaacggg aagaaatcgc agtggcaatt caagcggctg caactcgttc ggaaagatta
    18901 gcgttatccg ccgaattaca agccttagat caaaaggaaa tcacgctcgg acaacagaaa
    18961 atagcggttg aacgccagca aattgcagca aagcaggctc tcaaagtggc gtatgctgaa
    19021 aatgcggttg ctcaaagtgc aatgagtgca ggtatgatca cagcaaccac aacaaccaga
    19081 gcaatgaatg gtgttttagc ggctgcaaga gctgaattga atttactgaa agcagcagca
    19141 ctgtctaacc cattaatgac actcgcaatg gtggctacaa ctgccggtac tgccctttgg
    19201 ggattttttg aaagtcaaaa agcagctcgt gaagaagccc tccgctacgc tgacagctta
    19261 gactctgttc gagtcaatat cgaaaaaatg actaaggctc aaactgatgc agaaatggtt
    19321 aaattgtctc gttcgatcaa agaacaggaa acagcattag ctaatctgaa acaacgccaa
    19381 gctgaactta cacgagaaat agagcaagga gctacggttt atgaggatgc gtttgccggc
    19441 actgtgcgtg ttacgatgag tgcggaagag cttgcgaaaa aacaagaaga attaacatta
    19501 gttactgctg atgctgaaaa agctcaaaaa accttgaatt ctagcttaga ggctcaagaa
    19561 gccttaaaag ctcatattcc gattgctaac ctacgagagg aatttgttaa attatatcct
    19621 cacattgatg aaagccaaat caaagttgat ggcttaaata ttgctatcgg taattttacc
    19681 gtcaaatcac cggagatggt tattgctact aataacattg ctaatgctct tggtggcgtt
    19741 gccggagagg ctatgagagc ggctattcta gtcgctaatc tgtcaagtat gaagctggat
    19801 gctaacggtg ctgcaattat cgatcctaaa catcttgaaa aaatcgagca aattgaacgt
    19861 aacaatgcga ttggttcggc taaaggtaaa gataaaatcg cattgcaagt aaaagacgct
    19921 ctgattaaat caggtatgaa agagggcgat gccggatacg agcgactaaa agcagcatat
    19981 gagcaacaat ttacgttgca aaatgcccct aagggcaagg gtggaaaaac caaagccgaa
    20041 aaagaggcag aaaaagcggc taaaaagcaa caaagttatc aaaaccaagt ggcggagatg
    20101 acaaatcgtt tggcaggctt aaaagccaat gcttcagata tcgcgatttt cgggcaagtc
    20161 tccgactacc aagaagtgcg taaactgact gaagatattg cgatcaatgc cgaaaaatac
    20221 aaaggctacg gtgagcaagg tgtcgcaagg cttaaagagt tagccagtca gttagagtcc
    20281 gcccagcaac aagtcgctat ttctcaattt gcctacaatg gcggtgagaa actcaaagca
    20341 atggagtttg aattaacctt gctcggtaaa acccgccaag agcaagagtt aatgcagtac
    20401 aaccacgaat tagatcttga agcagctcgg ctcaaaatcg gtatggctga tgaaaatatt
    20461 gcgaagttag accaggaaat cgttaagcta aaagaacgtc gagcggaaat ccaagcacaa
    20521 gcagaacaag ctcgtggcag ctttaaacaa ggtatgttag atggtttgaa taatatcgaa
    20581 gctgatgtca gcaatgtagc ggcaaatgtt gccaatatta ctcaaaatac ctttgacggt
    20641 atggcggata gcttgactaa ttttgtgatg acaggtaaag cggatttccg tagttttgct
    20701 aattccatat tatctgatct tagcaaaatg attatcaaaa tgatgttatt taatgctatc
    20761 aaacaaggtg caactatgtt gtttggctac caaggaccga ctacaacggt aaatggtaat
    20821 gctgtttatg ggttaggtac ttgggcaaca ggtggctaca ccggcgatgg tggtaaatac
    20881 accccagcgg gtatcgtcca caaaggggaa tacgtcatca ccaaagaggc aaccgctcgt
    20941 cttggtttgg attacctaaa ctatcttaac tatggcaaac gagggttttc cagcggtggt
    21001 ggcgttgctg tgccgagagt gccatcctca tcttatcaac ctaaatcagc tcaaagtaat
    21061 atcagtgttc aggtgattaa taacggagag ccggttgatg caaaagtcag ccagaaacag
    21121 caaggcgatc aaatgcaaat taccgttgag ttaatgcgtg aaattgcccg acaggaggca
    21181 aacggtatga tccaaaacaa cttcagagct ggaggagtat ttgcctaatg gaaacattaa
    21241 aatggtgtgt tcgcaccgat ttagcggttg aaaatacccc tgaaataatg gaagtcaaat
    21301 tcggcgatgg ttatacccaa cgctcgccca aaggcttaaa caatttatta cgagcctata
    21361 caggcacaat caaagtgaaa aagggggaac atttagcggt ggaggcattt tttgccaaac
    21421 atcgtggtgt ttcccctttt tactttaaag atccgtacac acaacaaaac aaaaaggtag
    21481 tgtgtagcag ttggcccgca aaaatggttg gcttaaacca ttgggaattt agtgtaacct
    21541 ttaaggaagt accctaatgc ctgttagcat atccaatcaa atgaaactcg accttgccaa
    21601 acttgagcaa aatgcaatgc ttgatttgta cgaggtggac ttacgcacat taaaggataa
    21661 aagcggtaat gctggttc
//
LOCUS       DANLXB010000013        21426 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLXB010000013 DANLXB010000000
VERSION     DANLXB010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21426
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(112..861)
                     /gene="moeB"
                     /locus_tag="PXD41_000335"
     CDS             complement(112..861)
                     /gene="moeB"
                     /locus_tag="PXD41_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL6287902.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(960..2189)
                     /gene="moeA"
                     /locus_tag="PXD41_000336"
     CDS             complement(960..2189)
                     /gene="moeA"
                     /locus_tag="PXD41_000336"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL6287903.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2211..2828)
                     /locus_tag="PXD41_000337"
     CDS             complement(2211..2828)
                     /locus_tag="PXD41_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL6287904.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(2896..4107)
                     /locus_tag="PXD41_000338"
     CDS             complement(2896..4107)
                     /locus_tag="PXD41_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL6287905.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            4304..6235
                     /locus_tag="PXD41_000339"
     CDS             4304..6235
                     /locus_tag="PXD41_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6287906.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDESTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
     gene            6514..6771
                     /locus_tag="PXD41_000340"
     CDS             6514..6771
                     /locus_tag="PXD41_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6287907.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(6818..7438)
                     /locus_tag="PXD41_000341"
     CDS             complement(6818..7438)
                     /locus_tag="PXD41_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL6287908.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(7440..8093)
                     /locus_tag="PXD41_000342"
     CDS             complement(7440..8093)
                     /locus_tag="PXD41_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL6287909.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            8142..8801
                     /locus_tag="PXD41_000343"
     CDS             8142..8801
                     /locus_tag="PXD41_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL6287910.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(8838..9884)
                     /locus_tag="PXD41_000344"
     CDS             complement(8838..9884)
                     /locus_tag="PXD41_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL6287911.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(9884..10837)
                     /gene="dusC"
                     /locus_tag="PXD41_000345"
     CDS             complement(9884..10837)
                     /gene="dusC"
                     /locus_tag="PXD41_000345"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL6287912.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(10915..11541)
                     /locus_tag="PXD41_000346"
     CDS             complement(10915..11541)
                     /locus_tag="PXD41_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL6287913.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(11541..12398)
                     /gene="djlA"
                     /locus_tag="PXD41_000347"
     CDS             complement(11541..12398)
                     /gene="djlA"
                     /locus_tag="PXD41_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL6287914.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(12446..13156)
                     /locus_tag="PXD41_000348"
     CDS             complement(12446..13156)
                     /locus_tag="PXD41_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6287915.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(13392..13877)
                     /locus_tag="PXD41_000349"
     CDS             complement(13392..13877)
                     /locus_tag="PXD41_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6287916.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(13904..15190)
                     /gene="tolB"
                     /locus_tag="PXD41_000350"
     CDS             complement(13904..15190)
                     /gene="tolB"
                     /locus_tag="PXD41_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL6287917.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(15206..16429)
                     /gene="tolA"
                     /locus_tag="PXD41_000351"
     CDS             complement(15206..16429)
                     /gene="tolA"
                     /locus_tag="PXD41_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL6287918.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(16443..16880)
                     /gene="tolR"
                     /locus_tag="PXD41_000352"
     CDS             complement(16443..16880)
                     /gene="tolR"
                     /locus_tag="PXD41_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL6287919.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(17022..17702)
                     /gene="tolQ"
                     /locus_tag="PXD41_000353"
     CDS             complement(17022..17702)
                     /gene="tolQ"
                     /locus_tag="PXD41_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL6287920.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(17724..18125)
                     /gene="ybgC"
                     /locus_tag="PXD41_000354"
     CDS             complement(17724..18125)
                     /gene="ybgC"
                     /locus_tag="PXD41_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL6287921.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
     gene            complement(18288..18575)
                     /gene="ybgE"
                     /locus_tag="PXD41_000355"
     CDS             complement(18288..18575)
                     /gene="ybgE"
                     /locus_tag="PXD41_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL6287922.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(18575..18673)
                     /locus_tag="PXD41_000356"
     CDS             complement(18575..18673)
                     /locus_tag="PXD41_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL6287923.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(18688..19821)
                     /gene="cydB"
                     /locus_tag="PXD41_000357"
     CDS             complement(18688..19821)
                     /gene="cydB"
                     /locus_tag="PXD41_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL6287924.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(19834..21384)
                     /locus_tag="PXD41_000358"
     CDS             complement(19834..21384)
                     /locus_tag="PXD41_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL6287925.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         6544 a         4744 c         3908 g         6230 t
ORIGIN      
        1 acggtgtaaa taataggcta aaacgtttta gccgtcaaat aaaaaaaata aactgtcgtt
       61 cattttttac atttcttgac attttttcgc caataagtat gagaaaaata cttaataaga
      121 ggtacaaacc ggacagttat tttgcttagg taatgccatt tctctgacag aaaaatgcaa
      181 gccgtcaatc attaacaatt ttccggaaag agttctgccg atattaagta gcactttaat
      241 tgcttccaac gcttgaatac tgcctatgat gccaacaatc ggagcaatga cccccgcttc
      301 aacacaactt aaagtcgcat caccaaacaa cctgcttaaa cattcatagc acggttcttg
      361 ttcttgataa caaaatacac tcacctgccc ttcaaatcga attgccgaac cggaaacaag
      421 cggtcgtttt tgcttaaaac attgcaaatt taactgatta cgcacagtaa cgttatcggt
      481 acaatccagc actaaatcta catttgcaat cagcttggct aactgctcat cggaacatcg
      541 ctgattgata gtttcaatct gaatgttcgg attaatcgcc gctaatcgag ctttggcaga
      601 ttccaccttt ggctgcccga tagtcgcatc ggtatgtaaa atttggcgtt gcagattaga
      661 aagtgagacc agatcaaaat ccaccaaagt caaatgccca acgccggcag aagctaagta
      721 ttgcgatgcc gcacagccca aaccacctaa accgacaatc aacactcggc tggcttttaa
      781 cttttcctgc ccgtcaaaat ccacgctttt taggataatc tggcgattat aacgtagcat
      841 ttcgtgatcg gtaagttcca tttttacacc taaagagtaa acgatggcgc aagcgtccac
      901 gcttgtgcct atatttttat tgctagcaca agcgtggacg cttgcgctat cttaattcat
      961 taatacatca gcgaattaaa cggctgaata gtgacttttt ccccagcatc aacattgcct
     1021 cgttctgctt ctagcacaat aaaacagtta ctttcattaa aagcgctgaa aatatgtgag
     1081 ccttgcgtgc caactgcacg aacttctaac tcaccttttt cattggcata gtaatagccc
     1141 cgttggaaat cttggcgacc gaccgctttt ttcaattttc cggcactgca agcggttaga
     1201 ttttgggtta attttgcaat tttatctgtc gataaacccg aaagtttggc taacgccggt
     1261 tgcgctaatt ggtagaaagt cactaatgca gagacagggt tgcccggcag cccaaaaaac
     1321 caagcctgtt ctaatttacc gaatgcaaaa ggcttgcccg gcttcatcgc aattttccag
     1381 aaaccgattt cgcctaattt ttccagtaca tctttggtaa aatctgcctc tcccacagat
     1441 acgccgccac tggtaatcaa cacatcggct tgctgttggg cttgcctgaa agtttgctca
     1501 aacagaattg ggtcatcagg caaaatccca aaatctaaaa tctcgcagtt gagtttttcc
     1561 agcattaaac gcaccgcaaa acggttggtg tcgtaaattt ttccctcact caaaggctcg
     1621 ccaactgagg ttaattcatc gccggttgaa agaattgcca cttttaattt tacaaaaaca
     1681 ggcacagaag caataccgag tgaagctagc aacggtaaac tggctacatt caataatgag
     1741 ccttttttca agaccaatgc cccctgttta acatcttccc caatgcggcg aatgttactg
     1801 cctaattttg gaatatggtt aaaggttaca gagccatcgg aatttaacgt agtttcctct
     1861 tgcattacaa cggcatcaac gccctttggc actaatgctc ccgtcataat ccgcacgcat
     1921 tcgcctgcct ttatttcgcc gttaaacggg ttaccggcaa aggctttacc agccacattc
     1981 aaggttaaat tttgtgctaa atctgaaata cgaaccgcgt agccgtccat cgccgaatta
     2041 tcaaaattcg gtacattaat cggggaaaaa atatcctctg ccaacactcg gttagcacac
     2101 tcatttaacg gaagttgttc caccaattta ggtgtcgata aacgagcaag catattatct
     2161 aacgcatcac tcaaagccaa aagtgccata atttcctacc tattcaacgt ttagctaatt
     2221 tgtacaaaga aatcccgtac gccaatcaac agattattca ccgcaatcgc agccagaatt
     2281 aaccccatca ctcggctgat aatcgcagcc cctgcattac caataaggtg ctgaatacgg
     2341 tttgccgcta atagcaacaa ataggtaata aagagtacca aaagcataat gccggcggtg
     2401 ataatttgat cgccgatatg aaaacggtga ttgtcggtta ataatacgat tgccatcatc
     2461 gccccgggag aagcaatcga cggtacagct agcggataaa ccgccaattc attcagatta
     2521 ctgctgatcc gcatttcttg ctcgggcttg ctttcgccaa aaatcatcgt taaagcaaat
     2581 aacaacagca ctaagccgcc tgccgcttgg aatgcaggta acggaatctg cattgattct
     2641 aacagcactt gcccaccgat aaggaagaaa atcaaaatac cggcggcaat caagaccgca
     2701 tttagtgcaa ttttacgccg tgcttcaatc ggcaaaccaa tggtttttgc caaataaaca
     2761 ggaacagaac caatcgggtc gatcaccgcc cataaaacca caaattgtac cgctaatgaa
     2821 tcaaacatat tctctcctgt tatcttgata atttgcaaaa ttttagcata aaacaaccgc
     2881 ttgcacggct ttttcttaca gatagctcac cggtaacgct accaaatttt cacttaaata
     2941 aagtttggtc ggatattggt taataatcgc tccctgccct aatttccatt cactagaaac
     3001 tgagtttagc aagtcaaaac tttttgccat ttttttggtt gggcttgccg tgaccttaat
     3061 ttctatcgga taaagcgtgc gatcatattc aataattaag tcgatctctt tctggttagt
     3121 atcacggtaa aaataaatcg gcggctcaat tccttgatta tgaaaggatt ttataatttg
     3181 gcttaccaca aaggtttcaa agaactgcca gctttttgcc ccttgagcaa tagtttcggg
     3241 ggtaagccat ttggttaaat acgccattaa cccggtgtct agaaaataca cttttggggt
     3301 cttaattgcc cgtttcaaat gattgttgtg gtatggctgg agcaaataga taatgccgga
     3361 agtctgcaaa atggcgaccc aacgtttaat cgtttcattc gatactccaa cttcttgagc
     3421 aatattactg taattgagta gctcaccact acgagaggca atagagacca taaaacgggt
     3481 aaaatccgtt gtgctggcaa tattggttaa ttggcgaaca tctcgctcaa tgtaggtcgc
     3541 tacataagag cgataataaa tctcccaatc cacctcttgt gcatataaac gaggcatatc
     3601 gcctttatgg ataagctgcc agatgttctc cggtgatttt aattcttgct cccgagctaa
     3661 caaatagtcg gttgtcggta aaaaaggttg atcgaacttc acccctaaaa tttcacgcaa
     3721 cgaaagccct tgtaatttta aaatagcaat acgaccggca agtgtttcac tcacattctg
     3781 cattaattca aaggcttgcg accccgaaag taaaaacaaa ccgttttgct gttttttatc
     3841 aatttctaac tttaataacg caaaaatttc aggcacatac tgtacttcgt ctaaaataag
     3901 cttgccttga tggtttaaaa aaaacaggcg agattcttgt ttagccagct ccagcaacat
     3961 tgggtcatca aaagtaatat attgatagcc ctcaccaata tgttgtaaca atgtcgattt
     4021 accaacctgt cttgcccctg tcactaaaac ggcaggaaat tgcgccacga gtcgttttaa
     4081 cagcgattgc atttgccgag aaatcatttt tcctccaaaa tagcctaaat caagtttaac
     4141 ctcatatata atgttgaatt aaacttaatt taaattattt tttaagttta attcaacaca
     4201 gaatattgaa ttaaactgaa tttcttattt tagttcacaa agcaatggct ttgctttttt
     4261 atgctaaaat acgcaaaatt tttaacaaaa tagaccgctt gcaatgatct tttttacaga
     4321 cttaatttta aaacgagggc attccgttct cattgataac agctccgtta ccattcacac
     4381 cgggcagaaa gtcggtttgg tgggaaaaaa cggctgtggc aaatcctctc tttttgcctt
     4441 actgaaaaat gaattacaac ctgaaggtgg cgatgtatcg ttgccgaaaa actgggcgat
     4501 ctcgtgggta aatcaagaaa cgcctgcgtt agctatttca gcgttagact atgtgattca
     4561 aggagatcgg gaatataccc atcttatggc tgagctagat atcgcaaatg aaaagaatga
     4621 cggcaaccgc attgcgatta tccatactca acttgatacc attgatgctt ggacaattca
     4681 atcccgtgcc gctaccctgc ttaacggctt ggggtttagc accgaacaac tgcaactgcc
     4741 ggtgaaatcc ttctccggtg gctggcgtat gcggttaaat ttggcacaag ctctgatttg
     4801 tcgttccgat ctgttattgc ttgacgagcc aaccaaccac ttagacttag atgcggttat
     4861 ttggttggag cgttggctga gtaactatcg tggcacttta ttgttaattt cgcacgaccg
     4921 tgattttctc gatccgatta tcgatcgggt gattcatatt gaacatcaaa agctcaatga
     4981 atacaccggc aattacacct cgtttgagat tcaacgtgcg accaaaatcg cccagcagaa
     5041 tgccgcttat cagcaacagc aacgtaaagt tgctcatttg cagagtttta tcgatcgctt
     5101 taaagccaaa gcgactaaag cgaaacaggc acaaagccga attaaagcgt tggaaaaaat
     5161 ggagcttatt gccccagcct atgctgattc gccgtttgaa tttgaatttc gcccaccgct
     5221 tgcactgcct agcccgttat taatgatgga aaaagtcagt gccggctatg cggaaaaaac
     5281 ggtgttggaa tcggtcaaac tgaatttggt tcccggctct cgtattggtt tactcgggag
     5341 aaacggtgca gggaaatcca cgctgattaa attattggcg ggcgaacttc cgccccaaaa
     5401 cggctcaatt caactggcaa aaggcgtgca actcggctat ttcgcccaac atcaggtgga
     5461 tacactacgt tttgatgaaa gcccactttg gcatttacaa aaactcgcac cggaaaaaac
     5521 cgagcaggaa ttacgcaatt atttaggcgg tttcgatttt aaaggcgata aagtggtaca
     5581 agctgtgaaa tcattctccg gcggagaaaa ggcccgttta gtgcttgcct taattgtatg
     5641 gcaacgcccg aatttactgc tattagatga gtcaaccaac catttagatt tagaaatgcg
     5701 acaagccctg gttgatgcac tgacctatta cgaaggctcg ctagtggtgg tttcgcacga
     5761 ccgccattta ttgcgtagca ccgtgaatga attttattta gtgcacgacc gcaaagtgga
     5821 aaaatttaaa ggtgatttag acgattacca aaaatggctc aatgagcaaa acgccttagc
     5881 caacgagccg aaatccgtac ttgcaaaaga ttcggcaaat tcgaccgctt gctctagcac
     5941 caatgaaaat agtgcagctc aacgcaaaga gcaaaaacgc ttagaggcag agcgccgcca
     6001 acaaaccgcc ccattgcgga aaaaaattac tcaactggaa aaagagttag aaaaagcaac
     6061 cgaaaaatta aataaactcg aagcaatgct taccgaaagc gacatttatg aagccgaaaa
     6121 taaagcaaaa ctaactgaaa cacttgcgaa acagttagag gcaaaaaggc tggttgaaga
     6181 aattgaaatg caatggttgg aggctcagga ggagtttgag accatgttac gctagggttc
     6241 tacaagatag cgcaagcgtc cacgcttgtg ccatttaagg gaactataca cctcaaaaaa
     6301 acaatgatca ttaagctagc ttttttataa atttaaaaac ctatagatta aataaataat
     6361 gatattaata gtaaaatcac gagtgcaact acactgacga taataaaatc aggcatactt
     6421 attctcccta taaaatgtgg taatgtaact acaaattaat tatataatga acctaaaaaa
     6481 ggttcaacat tatttgtacc taatataggt gcaatgaaaa atcttagatt atcaatacat
     6541 tccagcgagc atatttggtt aagagaacta ttcttaaaac gccgtttgga actagggcta
     6601 acacaacgca cattaggaga aaaaatgggc gttctttact catttatcgg aaaagtagaa
     6661 acaggagatc gcagattaga tatttttgaa tttatcgctt attgcaaagg gttagattta
     6721 gatcctttat ctgtattgca agaaattgaa caacaatttc ctcataaata aaggcattga
     6781 gttataactc aatgccttta ttttctatgt caaatctcta catgctcggc ttagtctctg
     6841 ccagaatggc gtatttatta ttcatttcct ctgcccaagc ggttaaattt gggtaatttt
     6901 ttgcaagatc gtagcctatc ttatctaagc ggaatgccca ccagtcaatt aatgctactg
     6961 cggttaatgt gcctaaattc agctctgtgc caaactcttg caatgcctct tctaattgtc
     7021 tgaacgaacg gatattgcgt tccattaatt gctcgtggcg gctgacccac cattcattct
     7081 cggggcgagc catacgttct tgtaataaag ttggcatcgt attttccata atgccgtccg
     7141 ccaaattatg taatgccaac actgcccagc gaggtttacc ctctttaggt aacagtggag
     7201 tgttattgcc tttttggtca agatattcgc taattaacaa actaccgaaa agccaacgtc
     7261 cgcagttgcg ttgtagggca ggaatacgtc ctaacgggtt atcttgatta tgtggcgaat
     7321 ttggatccat tgcttttgtc acccgcaaca tttcgacttt atcgtctaat tggtggtgtt
     7381 taatcaccgc aagggctttg cgggcgaaag ggctggtggt tgagtaccaa agtttcatac
     7441 tattctccgt gtttgatgtg attggatttg caaatttttt gccaaaaatg accgcttgtc
     7501 ggcaaggctt gcactgagat tttctcattt tcgtattcaa aatcaagctg ataagcgtgc
     7561 aaataaacac ggtcggcttg gctacctgaa tagagtttat cacctaaaat cgggctgccc
     7621 aaacttttca ttgccactct taattggtga gttttgcctg ttttgggttg caaaataaaa
     7681 tgcctgagcg agtcttcaac agaatgagaa ataaattgcg ttactgccgg gttttcctta
     7741 ctgtggcata atttccacgc tccatttctg cttttttgca tatcgccaac aattctaccc
     7801 tgctttttct tcggcttttt atcgcttaat gcccaatagg ttttgtagat tttatgctgt
     7861 tcaaataaat ggtaaaacct tgctgccgcc tctttattca acgctaaaat cagtaaacct
     7921 gaggtgattt tatccagacg gtgaaccagc caaacctgct ttacattcag ttggcgagcc
     7981 actaattccg ttaagccgat ttcagcctca tctttatgca cactcaagcc ttccggctta
     8041 ttgataataa taaaatcacg atgttgataa caaataggca atgttggggt cattttgcta
     8101 taatccttcc aatttttgac tattttagca aggaaattac aatggctgtt accatttatt
     8161 tagtacgaca cggcagaacc gtgtggaatt tggaaggcag attacaaggc tcgggcgatt
     8221 ccgctttagt agaagaaggg attatcggag cgaagaaaac cggcattgcg ttaaaacata
     8281 ttccgtttac cgccgcctat tccagtatgc agaaacgggc tcaagatacc gcaaactaca
     8341 ttttagcaga aaatgaacgc agtaatattc cgcattttca tcataaaggc ttgaatgaat
     8401 ttgattttgg cagctgggaa ggaatgaaat ctgtcgattt gcaagaaaat gatgaatatt
     8461 gggtgatgaa acgtacaccg gcagaatatc tggcaaaagc aaacggtggc gagcgatttg
     8521 agcaacttta tcaacgggtg actcaggcgt tcaatcaaat cgccgagcta caccaaaatg
     8581 acggcaaagt gctgattgtt tcacatggta tgaccttaac cttactcacg gctgtgttaa
     8641 aaggcattgc gtggcaagat ttccgcaatg aagaaaaaca tagctttgtg ttcaatactg
     8701 ccattacgaa agtagaagta gagaatggca aagtaacggt gctggaattt aataataccg
     8761 accatttgga taatgtgcca acaagccaat acaaacgata atattaaggg cggaacattg
     8821 tccgcccata gcattttcta atcagagaac actttttctt tcgtttctgt tttagcaaat
     8881 accgtatttt tgaccgaagt aagcaactcc tgacgaatag ctgaaattct tggcttctca
     8941 ttcgcttgaa aagcaacagg acgacaaaat tccattgctt taatgccaag gcgagcagtg
     9001 agtaaaccca caccaatacc ttgtgcggca cggagcgata atttcgccgt aaggttttgc
     9061 gagaagaaat ccattccaac atcagtagcg atttcggttg caccggcgaa caccatattt
     9121 ttcagcacca ttttgaacag ttttaagcgg ctgatataac ccaattccat tccataggct
     9181 ttggtaattt tattcactaa agcgatattt cttgccgcca ttaacaacac atcaactatt
     9241 gccagcgggc taaccgccac aatcaccgca ttttctgccg cattgcggga aatcatctgc
     9301 ttaacctgtt tatctatcgg ctttagcaca ttttcgctaa acagatatag tacctctttg
     9361 gcattataag cctcgttcag ttcgcttttc caaagttgct cggcttgagc aatgctcggc
     9421 aagtgattaa gctgatttgc aatattttcg caaaatttga ccgcttgttc gccatcattg
     9481 gaaggcagct gttccagcaa taattggtta ctcatttgtt gatttttctg atgatttcgc
     9541 aaatacacca actttcgcca ttcggaaata atcgccccaa cgcccaacaa gctgacaata
     9601 aaaaagacta tcgagaacgc aaaatagatc cactctcttt gctggaacgt atcaatcaac
     9661 cactgaatac tttgagcaat taccgccacg ccaaacaagg caagtgtggc aagtagtact
     9721 cgaatccaaa agcgggaagg cttaaggctt tcttcaataa tcagctccgc ctcaactgct
     9781 ttttcctctt cttcaataat cgcattttcg agatcaaact cttgtttagg ttcaaaatgc
     9841 tcggttgttt ttagctcttc ttcattaaaa atttgcttac tcattattcc tccactgcct
     9901 tttcaatatg tgcttttaga ccatcatagc cgtgttcggt tttcaagata tcaaataatt
     9961 ctaccgcttg aggatattct ttatccaaat aacgtagcca ttgtttgatg cgagcaacgt
    10021 ggtaaaaacc ggtatcaaac tgattttcca tctgaacgta cttaaacaat agctgtagca
    10081 cttcattcca cgccattttc ggaacattat atttcaccac tttgcttaaa ttcggtgtgt
    10141 ttaacgcccc acgccccatc attaatgcct tgcaagcggt tattttttgg caatttttcg
    10201 ccgattcaaa atcccaaatt tcgccgttgg cgataacagg aatagacagc cgttgttgaa
    10261 tttcgccaat cgcctgccaa ttaattcttt ctgctcgata accatcaact ttggttcgcc
    10321 cgtgaacggt aatttcattc gctccgccct gttctaccgc atcggcaatt tcaaaacatt
    10381 ggctaacgga atcccaacct aatcgcactt ttacggaaac gattttatcg cttggcacag
    10441 cttcacgcat cgctttggtt gcacgataaa tcagttccgg atcttttaat aacgaagccc
    10501 caccattgct gccatttacc gttttagagg ggcagccaca gttgagatct accccgtgtg
    10561 aaccaagctc aatggcaaga gctgcatttt ctgccagcca ctgtgggtgt tgccctaaaa
    10621 gctgtacccg cactggtgtg ccggaatcgg ttaatccgcc ttgatatagc tcaggggcta
    10681 ggcgataaaa ggttttcttc ggtaaacgtt gatcgaccac tcgcacaaat tcggaaatac
    10741 agagatcgta gtcattcact gaagttaaaa ggttgcggac aaaagggtct aaaacccctt
    10801 gcatcggggc aagaataacg ttaggaattg gattcattgg taaaataaaa aatacaagcg
    10861 gttatttttt ctcaacattt tgcaaaaaat tggcaagaaa caaccgcttg aaggttaaaa
    10921 atgtctatcg tgaatgcgca aatcggggcg agcgatcagg taaatcatca gtgcggttaa
    10981 tgccccaaga gtatccgcaa gcatatcttt ttgagcgtcc caaatatccc cttgcgagcc
    11041 tagaaattcc acgccggcat tgccaccttc aatcacggca tattgccatt caataatttc
    11101 gtaagctgcc gccaccgaca taatgaaaaa cagcgagaag aaaaatgcta cgcccattcc
    11161 gcacttgcgt ttacgcagta accattctgc catcgggaag ctgtaaaaac cgataatgta
    11221 atgtgctact cgatcaaaat ggttacgatc ttcacctaaa atcggggtta gaaattgatt
    11281 tgcccactca aacggcacat tggcaaaggt atattttgcc ccgatcaagt gcataatcag
    11341 ccaaagcgac atcaaaaaat aagctaaccc actaaactga aatttagggt aagtgataat
    11401 taaaagggca aaaacgataa aaatcggtat cacttccgca taccaaactg cgcggtctgt
    11461 cggatttaac cctgaccaaa ccgcaatcac ggtaataaca atcgctaaaa atagagggat
    11521 gatatgcgag cgtgaatcca ttatttccac tctttcactt tacaaattaa atcgtacgcc
    11581 gcttgaattt gttgagcttt ctcttttgcc aactccatca tctcatcagg caaaccttta
    11641 gcggctaatt tatccgggtg atgttcgttc attaacttac gataagcccg tttcactgta
    11701 ttttgatcgt cttgtgcggt tacgcctaat acggtatagg ctgcctcaat gcttggttgt
    11761 gcaggctgct gataactgcc ctgatagcca ccttgagatt gctgatgata actcccattt
    11821 tgctgataat agccaccatt gcggaattgt tgagctgcca taatcattgc gatcatctgc
    11881 tcaaattgga agcgagacat tcccattgtt tcggcaatcg taaacagaat ttgttgctcg
    11941 ttcacatcaa gttgcccatc ttgcaaggct gcctgcattt gcacttcgac aaagaaacgt
    12001 aataagtcag ttcttgcccc acaggcttct ctgaactctt gaatgacttg gcgtaacggg
    12061 aagtcaggct ctttacctaa ggtaaaggca ttttgcgcta attgctgggc tgcactatct
    12121 aattttaagc gagccattaa cgctcgggct aattcaatat ccgcttcagt aacacgccct
    12181 tttgctttcg caatatgccc caacaccgca aaagtggttt gggtgaaaag cgattggcga
    12241 gttaaatttt taccgaaaag acttgaacga actgaaccta attcatagag ttttttatcg
    12301 gctaaatgcc cgataaaagc gccaagtatc ccaccaaata aaccgtgaaa aagctgatag
    12361 cccaagaaaa aaccgactat ttttccgata aattgcattt ttttatcctt ttatagaaat
    12421 gaataaacgt tattctaaca aaattttact ttgattgctt tttagttaat acaaacataa
    12481 gccagcttga gacaaaaata attgcataac ctagccaact caacatatcc gggtattgtt
    12541 caaagaacaa caaccctaaa attgcactaa atagcacaga ggcataacta taaattgaga
    12601 tgtctttcgc cgccgcatat ttataggcgg tagttacaca aaactgcccg accgctgaag
    12661 ttacccctgc taacactaag tagattgtct gtaaattggt tagcactaca taatcaatgg
    12721 cgacaaaagg caataatatc aaggtcgaaa aggcagaaaa aaagaaaaca atggtattag
    12781 gtgattctac ttttttggtt tttgccaata accttaagca taaataggca atggctgcaa
    12841 acacagagcc aatcacgcca accagataag gcataaagcg aatatcaact gccggtttga
    12901 taataaaaag tgccccgata aaggcaataa ggcataaaat ccattgcagg agagatgctc
    12961 tctcttttaa aaaaatcgca gaaagaataa ttaaaatgaa cgacgtgagt ttgccaatca
    13021 tatcgacatc acttagcaca aggtgatcga tgatatatac accacataaa atccccaata
    13081 acccggtgat ggaacggctt aataataaca aacgattttc tgcataacca aagaataatt
    13141 ggcgattttt ccacacaata taaccgctta tcaatgctgt gcgttgcgaa aaatcgcttt
    13201 ttgtgcaatc ggtacatccc ccgaaagacg aagaaaagca gccataatcg caaagcttag
    13261 tgccgacaaa agcacacaaa aaatggcttt aaataacggc gagagcgaat tccaaaaatt
    13321 catagcataa aggcttttaa taaaaataaa gccctgatta ttcagggctt caatttagaa
    13381 tcaactaaga attagtattc taatactgca cgacggtttt tcgcgtagtc agcttctgag
    13441 tgacctaata ctgctggttt ctcttcaccg taagaaacag ttgaagtgtt gttagcacct
    13501 ttagctgcta agtaaccttt aactgcatct gcgcgacgtt gacctaatgc gatgttgtac
    13561 tctggagtac cacgctcatc agcgtgacca gcaatagtta cgttaccttg agtttttgct
    13621 aataattgag cgtgagcgtc taataattga cggtattcac cttcaactgc atagctgtca
    13681 aaaccgaagt atacagtgtt gtattgtgct tttaattgtt cagctgttaa accaccgaat
    13741 tcgcctgctg catttgctgc tgcatttgct gctgcgtttg ctgctgcgtt tgctgctgca
    13801 tcatctgatg agctgctaca tgctgctaat gcgaaagctg gtactgctac cattaatact
    13861 ttagcaaatt ttttcatttg ttgctcctaa tagagaaata ttattattta gttaagtatg
    13921 gtgaccatgc agggaattta taatgtccac ctgcgccagg caaattagct ttaaaacgcc
    13981 catctgcaga caccaattgt agcactttac tcgtaccttt ggtagagcta taaataacca
    14041 taatgccatt cggtgaaata cttggacttt cgtctaagaa agttgaactc agtacttctg
    14101 tgccacctga agcgagatcg cgtttcacaa ctctatcacc ggcaatcatg attaaattct
    14161 taccatcaga tgatactttc gcattatagc taccgctacc gcccattggg ctagcaccac
    14221 cacctgatga actcattcta taaacttgag gagaacctgc acggtcagac gtaaagtaga
    14281 ttgtgctacc atctggagac cagcttggtt cagtattatt tccagcatta gcggtcaatt
    14341 tacttggtgt accaccgcca ctacctacaa cataaatatt taactcacca tcttgatttg
    14401 aggcaaacgc aatgcgagaa ccgtctggag agaatgatgg cgcaccatta tgtcctttca
    14461 atgctgccac tacacggcga gcacctgaac gaatatcgtg aacaacaacc tgcgcttttt
    14521 tattttcaaa tgtcacataa gctaatctgc taccatctgg tgaccactct ggcgacatta
    14581 aaggctcttt actggttgta atagtaaagg cattaaaacc atcataatca gatactcgta
    14641 attcatacga tgatacgcca cgttgaacca catacgcaat tttagttcta aatgcaccgc
    14701 gaatttgggt taatttttca aatacctcat cacttactgt atgcgcacct tgacgaattt
    14761 gggctgccgg aacaataaat gaaccttggg caatgacacc acccgctgta cccgatgtac
    14821 caagagtatc aattaattga taagcgacat tataaccgcc acctgtgcta ctcacttggc
    14881 caactacaat attatcaata ccgatagcac tccattgatc tgccaccact tccgctgctg
    14941 atcccggttg agcaggcatt tgagagcgtt caagcggtgt aaatttacca ctatttcgca
    15001 aatcatcaga aataatttgt gcaacatctg ccggcacacc gctggcttta aatggcacaa
    15061 ccgcaatcgg ctgagccata cttacacctt catcaataga aattcgcaca tcagaatcag
    15121 caaccacctg agttgtcaat aatgctgaaa agatgcctat tacacccgat atacgagaga
    15181 ataatttcat ttgtagtcct ctaaattatt taacttttaa actaaaatca agtgttggtg
    15241 atttaaacat attatatacc gcatctgatg gtgcaggtgg tacttttcta gttgccacta
    15301 ttgcacttac cgctgcatca catactgctt tatcgccact gataacttga tagttagtaa
    15361 ttgtgccatc tcgacttaag aatatcttaa catcacattg ttttccggca aaacttggat
    15421 caacccgata tcgagattga attaatttct taattcgttg accatatgca ttaccatcta
    15481 cattagtacc ttgccctaag ccacttgtac caccagaacc ttgtgatcct gctgagtttt
    15541 tgttaccacc tttacttgaa ccaccaccga tgtctccact attgaggaaa tcatcaagtg
    15601 ctttattgtt tttcgcttgg gcggcttttg cctcagcagc tgccttcgct ttagcttctt
    15661 tctcggcttt ctctttggct tctttttctg cttttgcttt ggcttctttc tcagcctttt
    15721 cttttgcttc tttttctgcc ttggctttag cttctttttc tgctttttcc ttcgcttctt
    15781 tagcttcttt tgcctgctgt tccttcagtt ctttttgctc ttttaacttt ttctcagctt
    15841 ccgctttctt ctgctgttca agcttctttt caagtgcttc tttagctttt ttctcttctt
    15901 cagcttgttt agcagcagcc tctaaacgct tagcttctgc atctgctttc agttttgctg
    15961 cttcagctgc ttttttacga gttgcttctt ctgcttgctg ctttttaagc tcttcttgct
    16021 tagcttgttc ttgcttttgc tgttcttgta gtttttgctg acgctcaatt tcttgctgac
    16081 gctgtttctc ttgaatcgcc gctaactcag cttgtttctg tttttggatc tcttccggag
    16141 tcggtttatc ttccacatct tcttcaacag cttcctcttt aggctctacc tttggcttcg
    16201 atgcttttga gccttttttc tctgccaata actgcccata ttcagcagcc acttgcccag
    16261 tatctaccat cacagcttca aagctatcgc tatcgccacc actgccacca gccgcagcga
    16321 gttccgtctt agtgaaaaga gacccgagca ataacaaccc gattaacaat atatgcaata
    16381 agatcgaaac aataaccgct agctctagtc tatcttgttg agatttcaca cgttatcctt
    16441 ggctatttac cttctgtcat taaacctacc gatttcactc cggcgtcttt aagtagtgta
    16501 atacctttca taatttcttc ataaggtact actttatcac cggcaactaa aaataaggta
    16561 ttgttatctt tttgaaattg ttcccctgca taggcaacaa cttctgattc attaatattc
    16621 tcttgcccat tactttgcac atagttaccg tcaattttca atttatattc accaacacct
    16681 gccacctcca aaatcactgg agttttatct tcattagaaa ctgattggct atgcgtatct
    16741 tccggtaaat taacttctac actttgactg ataattgggg ccgttgccat aaaaatcagc
    16801 aataatacca acaatacatc aagaaatgga acaatgttga tttctgattt aatgtcatta
    16861 cgttttaaac gacgagacat atattcctct ttacaggtgc ttagcacctt aattgatctg
    16921 aaataaccgg cacagtgtcc cggtctcgaa taatgcggtt acaagcggtc ttttttacga
    16981 aaaactttac aaattttcat taaaaatcaa ccgcttgtag attatctttt tgaaaaagcc
    17041 tgacggtgta ataaggtcgt gaactcatca atgaaattca catacccttg ctcaacttta
    17101 cctaaacgta aattcaaacg gttatatgcc attactgcag gaatcgccgc aaataaaccg
    17161 atagccgttg caattaatgc ttctgcaata cccggtgcga ctgattgtaa agttgcttgc
    17221 ttaactgcac ttaatcccat aaaggagtgc ataattcccc aaaccgttcc gaataaacca
    17281 atatatgggc tgattgaacc cactgtgcct aaaaacggaa tgtagttttc taaactttcc
    17341 atttcacggt ttaatgctaa gttcatcgca cgggtagaac cttgaataat cgattctggc
    17401 gcatctgggt tcgcttgttg taaacgggta aattctttaa acccaacata aaagatttgc
    17461 tctgaaccat ttaatgcatc acgacgattc tctaaacctt ggtgtaaacg gtttagatct
    17521 tcccctgacc agaatcgatc ttcaaaagca agggaatctt ttttggcttt agttaaaatt
    17581 ttgctgcgct gaataatcac cgcccaagac aaaattgaga atacaataag gatcagcatc
    17641 acgatcttta ccacaatact tgcttctaaa aataacgaaa gaagactaaa ttcagtttgc
    17701 attaataaaa ctccgaatag tttttaaata gaaaaataac ttttttgtaa tgcttgacga
    17761 atatcatcag gaattgcaac cggcttcatt ttgattaaat caacacaagc gaccgtaaca
    17821 tttgcctcac tcagacaatc gccatctttc cacaatcgtt gtttaaagat aagggttgct
    17881 ttcttcaatt ctgagagtgt tgtttccaca tttaataaat catctaaacg agcagggagc
    17941 ttataatcta tttcaatcct cttaacaaca aaagcaaggg attggctaaa aagttcctgc
    18001 tgtgagaaat gctgctgtct caaaaattcc gttcttgccc gctcaaaaaa attcagatag
    18061 ttggaatgat aaactactcc gccggcatca gtatcttcat aataaacacg aatcgggaaa
    18121 tccataagca ttatttctct cattcaaaat gaaaaaacgc ccaaaattta ggcgcaaatt
    18181 gtgagatatt ttaggatcag aaatattgtt atgcaagtat attttttggt aaattgcaaa
    18241 aatatttttt atctatcaaa aataaaaata gagacataaa aatgcctcta tttaacaagt
    18301 aaaatccata atgccggaat aacaataagg taacctagaa gtggtaaaaa aatcactttc
    18361 caaatagcag ctcggatttc aaatccaatt ccatgtaccc ataaaatagc cataccataa
    18421 aataccaaca ttgctaaata cggcgttttt ccaccaaaag aaagagcgaa agcggtcgaa
    18481 tttacccaaa tagttgcaaa taatacagcc gctaaaataa aagaaagggc ttttaacaag
    18541 ccctttgctg ttaagttata gagtttatga atcattactc gtcaaactta cctgtttttt
    18601 caatgctgat cgtgatgact gttgcaaaga agattgcaag caatacacct aagacccaag
    18661 ttacataaaa catattgtgt ctccttatta gtaagctgct ttattttctt ctaaataact
    18721 agcatctaaa cgaccataca ttttgatata tgaccaaata gtatatgcta atactaacgg
    18781 tacaaagata ccagcaacaa ataacattac agttaatgtt gtgtggctag cagtagcgtc
    18841 ccaaaccgtt aagctcattt ctggatgagt aattgacggc ataatgaatg ggaacattga
    18901 tactgcagca gttaaaatca ccccaacaat catcaatgat gatgagaaga atgctaaacc
    18961 tgaacgattt gcttttgagg caataatagt cagtaatgca cctactacaa ctaatgcagg
    19021 aacaacccat aatacaggca tttcagcata atttctaaac catgcaccag cttgaaccgc
    19081 tacagtttta ttcgtcaata gagattgtgc attatgatct aactcgcttg tgatcacaaa
    19141 accatcttta aaatataacc atacacctgc aagaataaat gccactaata caatagaagc
    19201 tgtcacttgt gccacttttc ttgagttgtt atgtagctca tcagtagttt tcatttgtaa
    19261 ccaagttgca ccctgtgtgg ttaacatcat taagctgata ataccgcaca ctaatgcaaa
    19321 tggatttaat aaaccaaaga atgaacccgt atattgtgat tggttaatat tattaaattc
    19381 aaatggtaca ccttgtaata agttaccgaa tgcaacaccg aatactaatg atggaacgaa
    19441 accaccaata aataatcccc aatcccaagc actacgccat ttcggattat caatttttgc
    19501 acgatactca aaacctacag ggcggaaaaa taatgctgca agcacaagca ccattgcaat
    19561 atagaaaccc gagaacgaag ttgcatagac tgttggccat gcagcgaaga tcgcaccacc
    19621 agcggtcaat aaccatactt ggttaccatc ccagtgaggg gcaattgtgt tgatcataat
    19681 acgacgttca acattacttt taccaatgat aggtaaaagg tttaatacgc ccatatcaaa
    19741 accatcagta attgcaaagc caattaacaa taccgcaatt aagatccacc aaataaagcg
    19801 gagaatttca taatcgatca tttctaactc ctattattta gttgattgtt caaaataata
    19861 acggcctgtt tttaatgcac tagggccaag acgaccatat ttgaacatta aatacatttc
    19921 tacaactaag aatagtgtat ataaaccaca caataagccg attgtaaacc ataaatcacc
    19981 tgttgttaat gcagagtttg acacaccgac aggtaacatt tcatagatag cccaaggctg
    20041 acggccatat tcggcaagga accaaccaga ttcaatcgca atccaaggta acggaagacc
    20101 gaataacaag cctcttaata agaaacggct actttctact ttaccacgca tattttgaat
    20161 aaatgctgtc gtaatcaaga taagcatcaa gaagccagat aacatcatta cacggaatgc
    20221 ccagaatgta gggcctacat ttggaattgt attatctgct gctttttgaa tttgttcttc
    20281 agtcgcatca accacattag gtgtatattg ttttaacaat aacccaaagc ctaaatcttt
    20341 ttgtacagct ttaaatgctt ctttatccgc ctctgtataa ttgccagaac gtaatttttc
    20401 taatagtccg taggctacca taccggtacg aacacgttgt tcattaatta cacgaatatc
    20461 ttttaggcct ttaatttctt tatctaaaga acgggttgca ataataccag ctgcataagg
    20521 aatatgaatt gagaattcat ttttcatttc cgcagtattt ggaatcacaa aagcattcca
    20581 agcagctgga gcaggctgag tttcgaattc accttccatt gcagctaatt tagtcggctg
    20641 agctttaccg atttcataac cagattcatc acccataatc agtacagaga tgatcgcaat
    20701 taaaccaaaa cttgcaccta ctgagaatga acgttttgca aagcctaagt cacgaccttt
    20761 taagatatag tatgaactaa tacctaatac aaaaatagca ccacaaacat agcctgcggt
    20821 tacagtatgt aagaatttag attgtgtaac tgggtttaat acaagttcag agaaacttga
    20881 aagctccatt cgcatggttt caaagttgaa ttcagaagca atcgggtttt gcatccaacc
    20941 attagcaact aaaatccata gtgcagagaa gttagaacca aacgcaacac agtaagttgc
    21001 taataaatgt ttcgctttcg ataaacgttc ccagccaaag aagaacaagc ccacaaaggt
    21061 agattctaag aagaacgcca ttaaaccttc aatcgctaat ggagcgccaa aaatatcacc
    21121 tacataatga gaataatatg accagttcat accaaactgg aattccattg taataccagt
    21181 tgttacccct agggcaaagt taataccaaa taatttaccc cagaatttag tcatatcttt
    21241 atatacttct ttacccgtag ttacatacag ggtttccatc accacaagga cgaaagaaag
    21301 acctaatgta agcggtacga ataagaagtg atagagtgca gttagagcaa actgcaaacg
    21361 tgagagttca actacatcta acatctcaaa cctcttatat taatatacta atttgacaat
    21421 tagatt
//
LOCUS       DANLXB010000014        21274 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLXB010000014 DANLXB010000000
VERSION     DANLXB010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21274
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..167)
                     /locus_tag="PXD41_000359"
     CDS             complement(<1..167)
                     /locus_tag="PXD41_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6287926.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(373..2034)
                     /locus_tag="PXD41_000360"
     CDS             complement(373..2034)
                     /locus_tag="PXD41_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6287927.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXD41_000361"
     CDS             complement(2047..3516)
                     /locus_tag="PXD41_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL6287928.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXD41_000362"
     CDS             complement(3564..5915)
                     /locus_tag="PXD41_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6287929.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXD41_000363"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXD41_000363"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6287930.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXD41_000364"
     CDS             complement(7045..7383)
                     /locus_tag="PXD41_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL6287931.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXD41_000365"
     CDS             7676..8995
                     /locus_tag="PXD41_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL6287932.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXD41_000366"
     CDS             9113..9475
                     /locus_tag="PXD41_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL6287933.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXD41_000367"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXD41_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL6287934.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXD41_000368"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXD41_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL6287935.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVECQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXD41_000369"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXD41_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL6287936.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXD41_000370"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXD41_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL6287937.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXD41_000371"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXD41_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL6287938.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            15009..16193
                     /gene="tuf"
                     /locus_tag="PXD41_000372"
     CDS             15009..16193
                     /gene="tuf"
                     /locus_tag="PXD41_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL6287939.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
     gene            16490..17788
                     /gene="tig"
                     /locus_tag="PXD41_000373"
     CDS             16490..17788
                     /gene="tig"
                     /locus_tag="PXD41_000373"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL6287940.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            17904..18356
                     /locus_tag="PXD41_000374"
     CDS             17904..18356
                     /locus_tag="PXD41_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6287941.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            18377..18877
                     /gene="secB"
                     /locus_tag="PXD41_000375"
     CDS             18377..18877
                     /gene="secB"
                     /locus_tag="PXD41_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL6287942.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            18984..19994
                     /gene="gpsA"
                     /locus_tag="PXD41_000376"
     CDS             18984..19994
                     /gene="gpsA"
                     /locus_tag="PXD41_000376"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL6287943.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            20010..20825
                     /gene="cysE"
                     /locus_tag="PXD41_000377"
     CDS             20010..20825
                     /gene="cysE"
                     /locus_tag="PXD41_000377"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL6287944.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            20874..>21274
                     /locus_tag="PXD41_000378"
     CDS             20874..>21274
                     /locus_tag="PXD41_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6287945.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLALNKTFIFNELKVKPELG"
BASE COUNT         6425 a         4080 c         4575 g         6194 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atgccagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaagt gtctaaagaa aaatttgaac gtacaaaacc gcacgttaat gtgggtacaa
    15061 tcggccacgt tgaccatggt aaaacaactt taacagcagc aatcactacc gtattagcaa
    15121 aacacttcgg tggtgcagct cgtgcatttg accaaatcga taacgcgcca gaagaaaaag
    15181 cgcgtggtat caccatcaac acttcacacg ttgagtacga tacagcaact cgtcactacg
    15241 cacacgttga ctgcccggga cacgcggact atgttaaaaa catgattacc ggtgcggcac
    15301 aaatggacgg cgctatctta gtagtagcag caactgacgg tccaatgcca caaactcgtg
    15361 agcacatctt attaggtcgc caagtaggtg taccatacat catcgtattc ttaaacaaat
    15421 gcgacatggt agatgacgaa gagttattag aattagttga gatggaagtg cgtgaacttc
    15481 tttcacaata cgacttccca ggtgatgaca ctccaatcgt acgtggttca gcgttacaag
    15541 cgttaaacgg cgtagcagag tgggaagaga aaatccttga attagcaaac cacttagaca
    15601 catacattcc agagcctgag cgtgcgattg ataaaccatt cttattacca atcgaagacg
    15661 tattctcaat ttcaggtcgt ggtacagtag taacaggtcg tgttgagcgt ggtatcatcc
    15721 gcactggtga tgaagttgaa atcgtaggta tcaaagatac agcgaaaaca accgtaacag
    15781 gtgttgagat gttccgtaaa ttattagacg aaggtcgtgc gggtgagaac gtaggtgcat
    15841 tattacgtgg tactaaacgt gaagaaatcg aacgtggtca agtattagcg aaaccgggtt
    15901 caatcactcc acacacagac ttcgaatcag aagtttacgt attatcaaaa gaagaaggtg
    15961 gtcgtcacac tccattcttc aaaggttacc gtccacagtt ctacttccgt acaacggacg
    16021 taacaggtac aatcgaatta ccggaaggtg tagagatggt aatgccgggc gacaacatca
    16081 aaatgactgt tagcctaatt cacccaatcg cgatggacga aggtttacgt tttgcgattc
    16141 gtgaaggtgg tcgtacagta ggtgcgggcg ttgtagctaa aatcatcaaa taattaagat
    16201 tgtttgataa attgaaaagc taaataaaaa ctagaaagag gcatatcgaa aggtatgcct
    16261 cttttgcttt tatgccgatt aagctagcca tatcatatca tttcatttgc aaaaatcggt
    16321 gaaaaaagac cgcttgtagg caagcccatt gacaagcagt cagattttag ggatttttta
    16381 caaaactgtt tatttgcgaa tgagtttctt ctcgacagtt tcttgataga acgctacaat
    16441 aaccgtctat ttgtatatct tttttatatc cctaaaccga ggtttaagaa tgtcattttc
    16501 aattgaaaca ttagaaggct taaaacgccg tgttactatt aacgtaccag ctgataaaat
    16561 cgaagcagca tacaaagaac aattaaaagg ctatgcgaaa aatgctcgtg tagatggctt
    16621 ccgtaaaggt aaagtgccac actcaattat cgaacaacgt tttggtattg cagcccgtca
    16681 agatgtgtta tctgatgaaa tgcaacgtgc attctttgaa gccgtcattg ctgaaaaaat
    16741 caacttggca ggtcgcccta ctttcacgcc aaacaactac caaccaggtc aagacttcag
    16801 ctttactgcg gaatttgaag tattcccaga agtggaatta aaaggtttag agaatatcga
    16861 agtagaaaaa ccggttgttg aaatcgcaga cgctgattta gacaaaatgg tagatgtatt
    16921 acgcaaacaa caagcgactt ggtcagaaag ccaagaggct gcaaaagccg aatctcgtgt
    16981 aactattgat ttcgttggtt cagtagatgg tgaagaattc gaaggcggta aagcatcaga
    17041 cttcgtgtta tttatggggc aaggtcgtat gatcccgggg tttgaagacg gaatcgtagg
    17101 tcgtaaagcg ggtgagcaat tcgacattga tgtgactttc ccagaagaat accacgctga
    17161 aaacttaaaa ggcaaagcag cgaaatttgc aattaccttg aaaaaagtag aagagatggt
    17221 attaccggaa ttaaccgaag agtttgtgaa aaaattcggt aatgcaaaat cagtggaaga
    17281 attacgcgca gaaattaaga aaaatatgca acgtgaactt aaaaatgcag tcacttcacg
    17341 tgtgaaaact caagtaatca acggcttaat tgctcaaaat gatgttgaag tgccggctgc
    17401 tgcggttgaa gaagaaatca acgtattacg ccaacaagcg gtgcaacgtt ttggtggtaa
    17461 gcctgaaatg gcagctcaat taccggctga attatttgaa gcagaagcta aacgccgtgt
    17521 tcaagtgggc ttattattat cttcaatcat cggttctaac gaattaaaag tagatgaaaa
    17581 acgtgttgaa gagatgatcg cagatatcgc ttcagcttac gaacaaccgg ctgaagtggt
    17641 tgctcactat gcgaaaaacc gtcaattaac tgaaaatatc cgcaatgtgg tattagaaga
    17701 gcaagcggtt gatgcagtgc tagcgaaagc gaaagtgact gaaaaaacaa tgtcatttga
    17761 cgaagtaatg tcacaacaag ctcaataatt tccttataag gtgggctttt gctcaccttt
    17821 tattactttt acaagcggtt aaatttagtg ataaatttgc atcaaaacga ccgcttattt
    17881 tttgatgtta aggaaattga attatggaac aactaacttt tgctcaacaa ttagagcaat
    17941 tttttgccaa tcataccttg atggtgtttg cttgggttgc attattgatt gcggtaattt
    18001 ttagctttta taaaagtgca acgcaaaaat ataaaattgt cgataacgca caggctacac
    18061 agctgattaa taaagaagag gcagtagtgg ttgatttacg ttctgatgaa gagttccgtg
    18121 ccggtcatat tattgatagc attcacgtgt taccgtcaga cattaaagca gctaaaatca
    18181 atcagattga taaatacaaa gctcgcccgg taattgtagt agacactaat gacttcactt
    18241 caggtggtgt tgcggcagat cttgctaaac aaggctttag cagagtttat gtattaaaag
    18301 aagggattgg cggctggcgt gcagcaagcc taccaactat taaaaaacat aaataatcta
    18361 ttattaagga aattttatgt cagaagaaaa tcaagttgca tcaacagaag aagctacaca
    18421 aacccctttt gagcttcaaa ttcaacgcat ttatgtaaaa gatgtttcat ttgaagcacc
    18481 aaatttaccg actattttcc aacaagagtg gaaaccacaa ttaggctttg agttagatac
    18541 tgaaaccaaa gaaattggtg aagatttata cgaagttacc ttacacatta cggtgcaaac
    18601 tacgttagaa gacagcaatg atgtcgcttt catttgtgaa gtaaaacaag caggtgtgtt
    18661 tactattaaa ggtttagaag gcattcaact tgctcactgc ttagcttcac aatgtccgaa
    18721 tgtgctttat ccttatgctc gtgagctaat ctcaagcctt gtgaatcgtg gtacattccc
    18781 ggcattaaat ctctcaccgg taaactttga tgcgttattt atggattatc tccaacgcca
    18841 agaagaaagt gcagaagagc cggctttagc gaactaagca ttttagatag aaaataggta
    18901 tgcaaggcat acctattttt ttacaagcgg ttattttttc tactattttt tgcaattttc
    18961 taaataagcc gaacagagga aatatgagtg aaatctattc tgccccaatc acggtattag
    19021 gtgcaggttc ttatggaaca gctttagcca ttgccctttc tcgaaatggt cacaaaacct
    19081 atttatgggg gcataatccc gacaaaatgg ccgttttggc atcagagcga atgaaccaag
    19141 attttctgcc tgatattgta ttcccggaag ccttagaaat tgtcgcagat cttgctacag
    19201 cggtacaaaa atcgaaagat ctgctgattg tggtgccaag tcatgtattc tctgaagtat
    19261 tggctcaaat caagcctttt ttgtcccaag atcaccgtat aatgtgggca accaaagggc
    19321 tggagcgaga taccgggcgt ttgttgcaaa cggtagctaa ggaaattttg ggggaaattt
    19381 acccgcttgc ggtgctttcc ggtccgactt ttgccaaaga actggcggca ggcttgccaa
    19441 cagcgatttc gcttgcctca actgatcctg tttttgccga tcaaatgcaa aaacggagtc
    19501 actgttccaa agcgttccga gtttacctca acaatgatat tatcggtgtg caactcggtg
    19561 gggctattaa aaatgtgatt gcaattggtg ccggtatttc agacggaatg ggattcgggg
    19621 cgaatgctcg taccgccttg attactcgag ggctggcgga gattagccgt ttgggtgttt
    19681 cgctcggggc tgatccgaaa acctttaccg gaatggcggg gcttggagat ttagtgctga
    19741 cgtgtaccga taaccaatcc cgaaaccgcc gatttggttt ggcgttaggg caaggaaaat
    19801 cggcagaagt cgcgatagcg gaaatcggtc aagtggtaga aggattttat aataccaaag
    19861 aagcctattt gctcgctcaa acacagggcg ttgaaatgcc gattgtagaa caaatttacc
    19921 aaatgttatt ttgtggcaaa caggcttcgg atgtggtgaa aaccttgttg gggcgtgaac
    19981 gaaaaggcga ataaagaaag gagaataaaa tgcagcagag tgaaattaat cagatttggc
    20041 aagcaattcg agatgaagcc aaagagctgg cgaattgtga acctatgtta gcaagttttt
    20101 tccacgctac cattttaaaa caccataatc taggcgatgc gttaagttat attttggcga
    20161 ataagttaga aaacccgatt atgccggcaa tcgccttaaa agaaattatt gaggaagctt
    20221 atcgagcaga gccacaaatt attgctagtg cagcttgtga tattaatgcg gtcagaacta
    20281 gagatcctgc ggtggacaaa tggagtacac ctctgctgta cttaaaaggc ttccacgctt
    20341 tacaaagcta tcgggtgacg cattatcttt ggaatcaagg caggaaagca ttagcggttt
    20401 atttacaaaa tgaaatttct gttgcctttg atgtggatat tcatcctgcg gcaaaggtcg
    20461 gttgcggaat tatgtttgac cacgccaccg gtattgtggt gggtgaaacc tctgtgatcg
    20521 aaaatgatgt ctcgatttta caaggtgtaa cactaggcgg tacagggaaa gaaaatggcg
    20581 accgccaccc gaaaatccgt gaaggcgtga tgattggagc cggtgcaaaa attctcggta
    20641 atattgaaat cggacgctat tctaaaatcg gggcaaattc agtggtgcta caacctgtgc
    20701 ctgatcacgc cacagcagca ggtgtaccgg ctcgcattat cggcaaatcc tctgaacaaa
    20761 aaccggcttt tgatatgaat caatactttg aagatgagca aggtttgttt ggtgatggga
    20821 tttaggtaag agttattcct ttaatttatg atttagacat tgctaagtac aagttgcaat
    20881 taacctttaa tgattttcag aactactata atggtaaagg ggatttaact atgttttctt
    20941 tttatggtaa gaaaacatgg gaaaatggca tttatgtagg gattgatggt agcattgggc
    21001 gtgcgaataa caaattaagc catcaaagcc agacgataaa actagccaga aatgtatatt
    21061 ctttaggatt aacggtaggt aaaacgttgg aagttgcaag ttttaaccta caaccgtcat
    21121 ttggtatgcg ctatcatcat ttaacatctg caaatgccca attagagaac acaaaatttg
    21181 agactgatag ggtagatctt ttggccattc aagctggttt agcattaaat aaaactttta
    21241 tatttaatga attaaaggta aaacctgaat tagg
//
LOCUS       DANLXB010000015        20694 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLXB010000015 DANLXB010000000
VERSION     DANLXB010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20694
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            4..717
                     /locus_tag="PXD41_000379"
     CDS             4..717
                     /locus_tag="PXD41_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL6287946.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            717..1211
                     /locus_tag="PXD41_000380"
     CDS             717..1211
                     /locus_tag="PXD41_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL6287947.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            1316..2596
                     /locus_tag="PXD41_000381"
     CDS             1316..2596
                     /locus_tag="PXD41_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6287948.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(2683..3720)
                     /locus_tag="PXD41_000382"
     CDS             complement(2683..3720)
                     /locus_tag="PXD41_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6287949.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            3942..4640
                     /locus_tag="PXD41_000383"
     CDS             3942..4640
                     /locus_tag="PXD41_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL6287950.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            4651..4953
                     /locus_tag="PXD41_000384"
     CDS             4651..4953
                     /locus_tag="PXD41_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL6287951.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(5074..6375)
                     /locus_tag="PXD41_000385"
     CDS             complement(5074..6375)
                     /locus_tag="PXD41_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6287952.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(6508..7482)
                     /gene="secF"
                     /locus_tag="PXD41_000386"
     CDS             complement(6508..7482)
                     /gene="secF"
                     /locus_tag="PXD41_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL6287953.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(7492..9333)
                     /gene="secD"
                     /locus_tag="PXD41_000387"
     CDS             complement(7492..9333)
                     /gene="secD"
                     /locus_tag="PXD41_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL6287954.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(9373..9666)
                     /gene="yajC"
                     /locus_tag="PXD41_000388"
     CDS             complement(9373..9666)
                     /gene="yajC"
                     /locus_tag="PXD41_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6287955.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            9867..10424
                     /locus_tag="PXD41_000389"
     CDS             9867..10424
                     /locus_tag="PXD41_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL6287956.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(10465..11433)
                     /locus_tag="PXD41_000390"
     CDS             complement(10465..11433)
                     /locus_tag="PXD41_000390"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL6287957.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(11559..12722)
                     /gene="galK"
                     /locus_tag="PXD41_000391"
     CDS             complement(11559..12722)
                     /gene="galK"
                     /locus_tag="PXD41_000391"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL6287958.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(12732..13778)
                     /gene="galT"
                     /locus_tag="PXD41_000392"
     CDS             complement(12732..13778)
                     /gene="galT"
                     /locus_tag="PXD41_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL6287959.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            13991..14842
                     /locus_tag="PXD41_000393"
     CDS             13991..14842
                     /locus_tag="PXD41_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL6287960.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(14928..16013)
                     /locus_tag="PXD41_000394"
     CDS             complement(14928..16013)
                     /locus_tag="PXD41_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6287961.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(16035..17015)
                     /locus_tag="PXD41_000395"
     CDS             complement(16035..17015)
                     /locus_tag="PXD41_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6287962.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(17118..18216)
                     /gene="prfB"
                     /locus_tag="PXD41_000396"
     CDS             complement(join(17118..18140,18142..18216))
                     /gene="prfB"
                     /locus_tag="PXD41_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL6287963.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            18472..19380
                     /locus_tag="PXD41_000397"
     CDS             18472..19380
                     /locus_tag="PXD41_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL6287964.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            19681..20322
                     /locus_tag="PXD41_000398"
     CDS             19681..20322
                     /locus_tag="PXD41_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL6287965.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            20489..>20694
                     /locus_tag="PXD41_000399"
     CDS             20489..>20694
                     /locus_tag="PXD41_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL6287966.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT         5931 a         4266 c         4434 g         6063 t
ORIGIN      
        1 tttatgaacc aaaaaaaatt agtttctttg attgtcgtta ttgtgttggc aatcatttct
       61 caaattttta gcttttttga taaaaaagag ccttcaaaag cacaagaaaa atcgacccag
      121 agtagtcagt ctcatcaagt ttcaacttca tcactaggga actatgatgt gcagatgaaa
      181 aacgaccgtt tgaaacagca tattgtagat accgattatt acaccttagc gttgtcgtgg
      241 tcgccggcgt tttgccaaaa acaaaagcga aataatcacg gtaaaattcc gtctcatttg
      301 gaatatcaat gtggtggctc agcggatttt ggttgggtta ttcacggctt atggccgcaa
      361 agtggcaagg caagaagtgt tgatgaacac cctcgttatt gccaaggcga tttgccgatg
      421 gtggcagagc agacgattaa gcaatattta cctgaatcgc cgggggcaac tttgttgcaa
      481 ggcgaatggg aaaaacacgg tgcttgtgcc tttaaccaag cggatgatta cttcgccaaa
      541 caaaaagagc tatttaatca gctcaaatta ccggataccg aaatgtctaa attagcactg
      601 tttaactgga tgcgagccaa taaccctcat ttgcaaaatg tctatttagg gggtagcaaa
      661 gatgagctgt atatttgcta tgataaagca tttcaaccaa tggattgccc acgctaatgg
      721 cagatcttcg ccaactgaaa atgcaggttc agcgccaatt aaagcgtgat cttgaacgtg
      781 caaatcacta ttttaatacc acttttacgc caccaagtat tagctatgcg gtgcgtggcg
      841 taaaagccgg tgtggcttat cttgaacgca acgaagtacg gtttaatcct gtgttattgc
      901 aagaaaatga acaggcattt atccgccaag ttgtgccgca cgaactggct catatcttgg
      961 tttatcaaca ttttgggcgg gtacaatctc atggtaaaga gtggaaaatg atgatggaaa
     1021 ccgtactggg tgtgccggcg gaaatttacc attgttttga tacccaaagt gtgcaacagc
     1081 aatttagtta ccaatgtgcc tgccagactc accagctttc gattcgccga cacaatgccg
     1141 tgatgcgaga taaaaaaagc tatatttgcc gtttatgtaa aactcaactc cattttgtag
     1201 aaaaaagtta atgtggagaa aagttaagag aatgttacga tttagctaga cattcctgtt
     1261 taaacgccta caatttgccg tagtttttat ttttaatttt atttccggag tatttatgga
     1321 aacaattgta attgtaggtg gcggtgcagg cggtttggag cttgcaacct atctaggcaa
     1381 caaattaggg cgtaaacaaa aggcaaaagt ggtgctgatt gaccgcaatg caacgcattt
     1441 atggaaacca ctgttgcacg aggtggcaac cggtactatt gatgagggaa ctgatgcgtt
     1501 aagctatcgg gctcacgcta aaaatcatag ttttgaattt cagcaaggta cgctggtggc
     1561 ggtagataga gagaagaaaa cggtttcact cgccccgatt tataatgatc aaaaccaact
     1621 tctcgttaaa gaacgccata tcagttatga caaattagtg atcgcgatcg gcagtaaatc
     1681 caatgatttt ggcaccaaag gggttgcaga aaattgcatt ttcttagatg gctcagagca
     1741 agcaaaagat ttccaaaaac gaatgatgga gctgttttta cgtttttcac atagtgaaaa
     1801 taaagatgta aaaattgcga ttgtgggggg gggagcaaca ggtattgagc tttcagcgga
     1861 gctttaccac gtggtgaaaa atttaaattc ttacggcttt ggtaaattaa accgtgccag
     1921 cttgaaagtc actttaattg aggcaggccc tcgtttgatt ccggcattac cggagaaagt
     1981 gtcggtttct gctttccacg aattgaaaaa agcgggtgtt tcggtgcgtt taggtacgat
     2041 gattaccgaa gctcgtccag atgggctaat gacccgttta ggtgagaaaa ttgaggcgga
     2101 tattatggtt tgggcggctg gcgtgaaagc ccctgaaatt acccgtgaat ttggttttga
     2161 aactaaccgc ttgaaccaaa ttgagattaa agacacgcta caaaccaccg ttgatgagtc
     2221 agtgtttgtc attggcgatt gtgcatcatt aattcaagat ggcaagccaa ttccacccag
     2281 agcacaagca gcccaccaaa tggcaacccg atgtggtaaa aatattgtgg cattgataga
     2341 aggaaaagag atgaagccgt ttcgatttaa cgataaaggc tcactgcttt ccttctcaaa
     2401 attcggcacg gtgggtaatt taatggggaa tttagtgagc ggtgatatgt ttattgaagg
     2461 taaaattgcc cgcttggctt acctctcgct ttatcgaatg caccaagtgg cattacacgg
     2521 ctgtgtcaaa accggcttga ttgtgttggt agggcaaatt aaccgtttct taagaccaac
     2581 aatgaaacta cattaaacaa aaatccgcat caaatgatgc ggatttttta tggcaaaata
     2641 acaagcggtt attttcttgc ctatttttgc aaatactcac gcctagtttg ctaatttaat
     2701 ttccgccaac catttatcaa ttaagcgttt gccctcttcg ctggaacctg ctttttggta
     2761 atcaatttcc acaaagtcta acgcttcggc tttggttgat tgtggagcaa cttcggcgtt
     2821 gatgtttgtt ggggtttggt aaacaccgtg ttttttccaa ggaatttcct gtgcttcttt
     2881 tgaaagcacc caatccataa agagtttggc gttatctaaa ttacgggcat ttttgataat
     2941 gctgacaccg cctaacgcat agcccacttt accttccgga ataatggctt caataggcgc
     3001 acctttttct ttttcagtgg cataactatg tacaaagcct accgtaaccg cactttcacc
     3061 acgagcaaga ttgctggtga ctagggtgct tttcacatat tgcgaaacgt tattgttgag
     3121 ttttttcaga taatcaaagg ttttctcttc gccccataag gttgaaagag tggtcataaa
     3181 cgtataagtc gtgccggagc tacgaggatc aggcagttgt acttcacctt ttaagcgagg
     3241 atctgataaa tcttcccatt ttttcggtgc ctcaatgcct agtttggcga gtttttcggt
     3301 attcacgcct aaccctaata caagcatata aacgatagag gtaaatttac cttgttcact
     3361 ttcaactaag gatttaaatt gtggcagaat ttcagcttgt tttggtgaac ggtaggcttc
     3421 cagtaagcct aattcgcctg cttgaaagtg aggttcaatc gtgccgccat accaaatatc
     3481 tgcctgaggg ttcgatgctt ccgcttttac ttttccgaaa attgtaccgg ttccgccgtg
     3541 aatgaattta gtttcgacat tatatttgtg tgaaaattgc ttggtcattt cttcacaaac
     3601 attattttgt accgagcaat aaacagttaa acgaccttct gcttgtgctg cttgagctga
     3661 taagaaaatg ccagaggcga ttaagatcga ttttaatgag attaatttga gtacgttcat
     3721 cactttcctg aaaacataaa ataaaaggta gtgaagtcta gcatttcaaa gcgctggttg
     3781 aaaatagtta attgcaatga agtagggcaa ttgtgcctat tactttaata tttaccaact
     3841 atttgcaagt tttagcaaaa aataaccgct tgtagtagct cttgctattt tgtcaaaatt
     3901 cagaataata aatgccttta gtctaatgtt aaattttagt tatggaaaat agttggaaat
     3961 atgcttttaa attaatcacg ccgattttta tgggctattt tgcggcaggg gttgcttacg
     4021 gaatgcttgc caccaatgcc ggaatgcctg cgtggtttac gattgtaatg agttttaccg
     4081 tggtatcggg gacggcacaa tatgcagcga ttccattttt tgtctccggt gttggggcgg
     4141 tgtcggtctt tctcagtacg cttttaatga gtctacgttt tagtttttac accttaaata
     4201 tgatggagca taagccgata tccaaagcga aaagtctggt cgctattgca ggtttaactg
     4261 atgaaggctt tgcggtgtta tcttcattac cgaaagagca aaagcaagca ttattcttta
     4321 aaatcgctgt gctatgtgtg gcttattgga cattttccac gattgtcggt gtgttgttag
     4381 gcgattcagt ggcgaactat attccgcatt tggattttgc tctgccttgt ttgtttgcaa
     4441 ttttagccta tgagcaatac aaaaaccaaa aacaatggaa accgattgtg attgcgttaa
     4501 tcggattttt acttgctcgt cagattaccg aaaccagcgt gttattggtg gcaattttag
     4561 tagcgattgt cattgtggct ttattacctc aatcttcttc aatcaaacta gagaaaggag
     4621 tagaaaatga gcacaaatga tactttgata atgtttgcag cattagtgct cggctcgcaa
     4681 atttgtcgtt ttttgccgga atttttaccg aaaaaggtgt tatcttcgcc cattttgcaa
     4741 aaattaaaca aaatgttacc gcttgtgatt atgcttttat tgcttttaac gagcctaaac
     4801 tttcctaaaa acggggaagg ctttaactta atattggcac aaattctggc tttaataggc
     4861 gtattaggta gctatgtttg gcttaaaaat acctttttaa gcgtagcgtt ggggattttc
     4921 ggtgtgaatg tatttttatc cctgttagga taaataccaa aggtcatttt ataggagcga
     4981 aacaccttcg ctcaatcatt aacagatgtg gggcgaaaaa tttttcgccc cttatttatc
     5041 acaagcggtc tttttctttc aattttttgc aaattaaatc gctaaatcaa acgcatagaa
     5101 ggcaactaaa ataatcgcaa taattactgt acctaggttt aatttattgg cttcgcctga
     5161 aattaagcga ccaatcacaa gggtggcgaa acctagcata atgcctgtca caatgttggc
     5221 ggttaatacg atgaacaccg cacagactaa acctgacatt gcacctacaa aatcgctgaa
     5281 atctaattta gagacattac ttagcattaa taagcccaca tacattaatg ccggtgcggt
     5341 ggcatagctt ggtactaaga atgcaagagg ttggaagaac agcataaata agaaaccgat
     5401 accaaccact acagcggtta aacctgtttt accgccaacg gctgtacctg ctgccgattc
     5461 aatatacact gccgctggtg ctgtaccaaa taagcccgat aaaattgatc cgaatgagtc
     5521 agaagttagg gctttatcgc cattgataat ttgtccgtct ttatctaata aaccggcttg
     5581 ccctgcaacc gcacggatag tacctgttgc atcaaaaata gcggtcatta ctaacgcaaa
     5641 cactaccggt aaaatggcgg tatttaatgc tcccataata tcaagattta ggaattgcga
     5701 attttcacca aaactcggca ttttgaaaaa gcctgtgtat tttacgttag ggtcaaaaat
     5761 taaacctacg atggtaatag caataatgac ccataaaata ctgcctttta ctttcagctt
     5821 ttctaacccg ataatggcgg ctagaccgat taatgacact aaaaccggaa atgaagtgaa
     5881 gtcccctaat ttaaccggaa tatccatacc gctattgacc actaatttaa cgttagtggc
     5941 ggcaataatc agtaagaata aaccaatacc aattccagca ccgtgggcaa tgctgcttgg
     6001 caaattacgt aaaatccaag tacgaatacc ggtagcagaa atcaaggtaa atactacgcc
     6061 cattaagaaa atcgccccga gtgcaacagg aatagaaact tgttgcccta atactaagct
     6121 aaaggcagta aaagcagtaa gtgaaatcgc acaaccgatt gccattgggg catttgccca
     6181 taaaccgatt aagatagagc cgagacctga aactaaacag gtggcaataa ataccgattc
     6241 ggcaggaaag cctgcttggc ttagcattcc cggcacaacg atgacggaat aaaccatggc
     6301 taaaaaggta gttaaaccgg cgatgatttc ttgacgagcg tttgaaccac gctcctcaaa
     6361 tttaaataac gacataagaa cctcaaaaga agaaaatgaa aggggaaatt ttaggatgcg
     6421 gaattttaca gaaatttaaa ataattagca aacgtttgcg taaaaagtga aagaaaagca
     6481 ggaataaatc ctgcttttgt ttgatggtta gtaatcgatg aaagcgtctt gatctgcccc
     6541 ttccttttca actttaggct gaaccatatg ttcacgtttt agcccaagtt gtagtgccac
     6601 accaattgca atgtagatgg atgaataagt accgaaaccg ataccgatca ataatgcaag
     6661 tgagaaacta tgaagcgttg gaccacctag atagaataag gctagtacca caaagagggt
     6721 ggttactgat gtcattaaag tacgcgaaag tgtttggctc aaggaaatat cgataatttc
     6781 aattgagctg gagcgacgaa ctttagaaaa gttttcacgt acacggtcaa acaccacaat
     6841 tgagtcattt aacgagtaac cgacaacaga taaaatcgct gctacaaagg tcaagtcaat
     6901 ttcaatctgt aagaaagaga agattccgat cgtcactaat acatcgtgaa ataaagccac
     6961 aataccgcct accgctaaac gccactcaaa acgtgttccc acgtaaataa gtagcatagc
     7021 aagtgttgcc aaagtggcat aaatagcccc ttgggttagc tcttccccca cgtttgggcc
     7081 aacgaattca atgctcttga tagtcgcatt cggatctaat ttttgatgga tcatctccat
     7141 cactttattc ccaacagaca tatcaccggc actggcggca agtcggatca ttaaatcttt
     7201 ttgactgcct gtggtttgca ctaaggcatt gccgtagccg ctattttcaa gctccgtacg
     7261 cagttttgct aaatcagcag gttgtgaaaa ttgagtttcg attactgtcc cgccggtaaa
     7321 atctaacccc cagttaaagc cttttgtcgc aatagtaaaa atgcataaag cagttacaat
     7381 cagcgaaaaa atgaatccga catagcggta tttcataaag gggattaatt tataaggcag
     7441 tttaatttct gctacatctt gttgtacatt ttcaatagcc atttttccac cttaaatcca
     7501 aagtttcttc acgcgtttgc caccgtaaac ccagtttaca agcattcgag tacctgtaat
     7561 tgcggtaaac atagaaataa ttacccctaa tgcaagcgtt accgcaaagc cttttaccgg
     7621 acctgtacct acaccataaa gcacaagaga agtcaaaata gtggtgaggt tggagtcaaa
     7681 aatacttgag aatgcgccat tataaccttc gtggattgct tgttgaattg ggcgaccgtt
     7741 acgaatctct tctttgatcc gctcgtagat tagtacgttg gcatcaactg acatacccac
     7801 agcaagtacg ataccggcaa ttcccggcat agtaagggtt gcaccgatta atgacattaa
     7861 accaatcgtt aagatcatat tcacaatcaa ggcaagagag gcaaatatac caaatacttt
     7921 ataaaaggct agacagaaca ggatcgttaa gcctaagcct aaaatactag cttccatacc
     7981 ttgtttaaca ttatctgccc caagagaagc accgatagta cgctcttcca caatcacgat
     8041 tggagcaatc aacgcacctg aacgtaataa taccgcaagg ttttgagctt ccgctggtga
     8101 attaatccct gtaatctgga attgattacc taaacgggtt tgaatggttg caacgttaat
     8161 tacctcttgg tgtttttcta aaatgacttt accgttagca tctttacgac ctgaatcttt
     8221 aaattcggta taaagtgttg ccatcggttt ttggattgcc attttagtaa tttcacccat
     8281 catctcgccg ccttcggtat cgagtcggat actcacttgc ggcaagccac gctcatcagt
     8341 gcctgaggtt gcatcaataa tatgttcacc ccctaacgaa ggtttacggc gtaatacaac
     8401 tggctcgcca tcacgggtgt tttgcagtcc tgaatcagcc ggcacaatgc ctttcgccgc
     8461 agaggccaca ttggcttcgg tattgactaa ccggaactca agggttgcag ttgcccctaa
     8521 aagctctttg gcacgagcgg tatcttgcac acccggtaat tcaactacga tacgatctgc
     8581 accttgacgc tgaatggtcg gctcagaaac gcccaattcc tcaacacgtt tacgcaaaat
     8641 agaaaggttt tgttcgattg ccatcgtgcg agattcagaa agagcttgtg ctgatggcgt
     8701 taaggtgact ttattatcat ttaccaaaat atcaagcgtt gggtgagaga gacgcactaa
     8761 acgcactgct ttttcggcgg tatcgttatc ggcaaattca acctcagttg caaaattttc
     8821 gccttttttg accgcttgat attgcaattt ttctttacgg aaatcactac gcaggctgtc
     8881 ttgcaaagtg tcttgttgtt ttgcaagcgc cgtgttcata tccacttcca ttaagaaacg
     8941 aacaccgcca agcaagtcca agcctcgctt catcgggcta ccgccaatgt cagacaacca
     9001 ctgtggcgtt gctggtgcaa ggtttaaggc aacagagtag ttattcccca atgcttctga
     9061 gattttttct ttggcaggca attgctgttc gctgctttcg agacgaacca aaatcgagcc
     9121 attttctaac acggcagatt tcggctgaat attcattgct gaaagtgtgg attgcacttg
     9181 agacagtgtc tcaggtgtgg cttgttgccc acgagtaccg gaaatttgta ccgaaggatc
     9241 atcgccatat aaatttggaa gggcatataa agcaccaatg gcgatcacga agatcaccat
     9301 taaattcttc catagaggga aacggtttaa cacaataact ccccgaatgt taaagttgga
     9361 taagagggtt gattaaagtg attttaatga accttttggt aacaccgcaa caacgaaatc
     9421 acgtttgatg gtcacttcag ttgtgtcatt taatgcaatc acgatgttat cgttatcagc
     9481 ggtcactttg gtaattttac cgattaaacc accgctggtt aatacttcat cgccttttgt
     9541 caagcttgcc agtaaatcac gttgttgttt ttggcgtttt gcctgaggac gataaatcat
     9601 aaaatagaaa attgcaccga aaataatcag gataaagatc atttccattc cgccaccttg
     9661 ttgcataaaa actccttaaa tgtttgagtg gtataaaaat aagtgttata aaaaacgcct
     9721 gttaaaatac cataaattca atgaattaac gagtagaaaa attcatcgaa tgcttttctt
     9781 ttaaacaaaa atttgagtag aatcagcact tttagtttag gattaggttc ttggcgtgtt
     9841 cttgcgctga cacaatagga gaaaaaatga aaaaattatt cgctcaagcg gttatttttg
     9901 gggctttttt tgcaagttcc gcttttgctc acaatgtgca attaaatcaa gcattacctg
     9961 ctgtttcggt tgcaaaagac ggggaattgg cagtggcagg tggaaaggtt agctataaaa
    10021 attggcattc atcatctctg gcaggtaaag tccgtgttat tcatcatttt gccggtagaa
    10081 gttcggtgaa agaaaaaaat gaagatttga tgacagcaat taaaaatgcc ggttttgatc
    10141 gctcgaaata ccaaacggtg acgattgtaa atgctgatga tgcgattgtc ggcacagggg
    10201 tatttgtgaa aaatagtgtg gaaaacggca aacttgacaa tcctcacagc caagtagtgt
    10261 tagaccagca aggcagtgtg aaaaaagcgt ggggcttaaa agagaaagag agctttattg
    10321 cagtgctgga taaatcgggt aaggtacaat ttacctctga gggcaaactc tctgcaaaac
    10381 agattcaaga agtgattggg ttggtgaaaa cattaacgca ataaccagtg tttttatggg
    10441 cggattttgt atccgcccat cattctagat aataaatcga taacttatcg tgtgatgata
    10501 ctcttctcct gcttttgtta tcccgccaaa ttggagtaat tcaggctggt ttagtgaatt
    10561 tgggaaaaac tcaggctcta atgctacacc agcgtaatct tcatattcgc ctttagtcaa
    10621 attaggttgt ccttttagcc agttgccggt gtaaagttgt aatgctggca tggaggtgcg
    10681 gagttccatt tttaagtctt ccacggctaa acaagcggtc ggattttcac tattttttgc
    10741 aagatgaaag gagtgatcgt aaccttttac cgctttttgg tcgtcatcag ccaataaatc
    10801 ttgcccaatt tttttagcat tgcggaagtc aaaactggta ctctccactt ttttcagtgg
    10861 agcattagga ataccgctgg catcaaccgg taagtatccg tctgcattaa ttatcagctc
    10921 gtgatctaaa atcgtctctg aaccttgcaa attaaaatag gcgtgattag ttaagcaaag
    10981 cggtgtatct tggttagcaa cggcatcaaa gctgatttga agctcattct ctgttaagcg
    11041 atactccaca aaagctttca cttcgccgcc aaatccttcc tcgccatctg caaaaaaata
    11101 actaaatttg accgcttgtt cgctttggct ttcaagttgc cacactattt tatctgcccc
    11161 aagctcgcca ccgtggagat tatgttcacc gttattttta gcgagctggt aggttttgcc
    11221 gtttaagcga tattcggcat tggcaatgcg gttagcgtaa cgcccaatgg tcgctccaaa
    11281 gaaagcggtc tgtttttgcc aattttttgc agacgtggtg actaatactt cccgttcctc
    11341 gttcggcatt ttgacaatgc acgaaagcca agaagcccca acatcagaaa gggtaatgcg
    11401 taaaaacgca ttttcaaggg tgaataattt catcggttga ccttaattac ctagcacggc
    11461 atagccgtac taggttaagc ataattcagc cctgctaggg ctgaggttat ttattttaga
    11521 gtagcggagc tacttcctta tgcttaaccc ggtacgcttt agcgtgccgg gcattctcgc
    11581 accccatcgg aggcagtaca aacgtggaag gtttctttaa tgccggtttg cttttcgtaa
    11641 ttgttagcaa cggcttggcg gagatcttcc actttgtcat ttggcactag gcacacgaca
    11701 caaccgccaa agccgccgcc agtcattctg gctccgccgt ttttaccgat agcttgttgg
    11761 gcgatttcgg ctaagcaatc cacttcaggg caggtgattt caaaatcatc acgcattgag
    11821 tcgtgagatt gagccatcaa ctccccgagt ttgaccatat cattcgcttt taaggcctct
    11881 actgcttcca gaactcgttg attttcgctg atgatatgtt ttgctcgttt atacgccagc
    11941 tcattctctt cactaagttc tgaggctcgt tcaataaatt gttccgctgt gacatcacgc
    12001 aattttgctt tgccgaagaa gtgggcggca aattcgcact gttcacggcg actgttgtat
    12061 tcgccggtaa ccaagtcgtg ttttacgttg gagttaataa tcgcaatcga atagccttgt
    12121 ggcacagggg ttggggtgat ttctaaacta cggcagtcga tcatcactaa atgatcttgt
    12181 tgcccgagag cggaggtgag ctgatccata ttgccgcagt tgcagccgac aaatttattc
    12241 tcagcctctt gcccgattaa tgcgatttgc ggtaaagaaa gcggtaaatc gccgagtaat
    12301 tgagcggttt taccaatcga cacttccaat gcggcggaag aacttaaacc tgatgacatc
    12361 ggcacatcgc tggtaatggc taaatctgct ccttgtttga attcggggtg tttggcttga
    12421 ataaatttca ccacgccacg cacataattc gcccattttt gctcgcttgg ctcaatcgcc
    12481 tggcttaaat caaattcatc ttgttggttg agatcaatgg cgaacacccg ccatttgttg
    12541 tcactacgtt tggcaaagct aaccgctgtg ccgtaattga tggcacaagg cattacaaac
    12601 ccatcgttgt aatcagtatg ttcgccgata atattcactc tgcccggggc aaataccgtg
    12661 cgttctgctt tataaccaaa atgttgttca aattgttgca aagcgatttc ttgtggtttc
    12721 atttcaattc cttatttatc tttatagtgt ttggtatcac ttactgcatt taaacgttcg
    12781 gcagcttgtt ccggggttaa atcacgttgg ctttctgcca tcatttcata accgaccata
    12841 aatttacgca ctgttgccga acgcaagagc ggcggataga agtgagcgtg taattgccag
    12901 tgagcatttt ccttgccgtt aaacggagcg aagtgaaagc ccattgaata aggaaagctg
    12961 atgttaaaca gattgtcgta acgggtggtg agctttttca atgcaagggc taaatccgct
    13021 ttttccgctt cgtttaaatc ggtaatggat ttgaactgct tggctttcgg caacagcaag
    13081 gtttcaaacg gccaagccgc ccagtaaggc acaaccgcaa tccaatcttc ggtttctgcc
    13141 acaattcgct cttgtttgtc taattcacgt tgtgcgtagt caagcaacag tggcgagcca
    13201 tattgagcaa aatatttcgc ttggcattcg tcttcaatcg caatttcatt aggtagaaaa
    13261 ttacttgccc aaatttgccc gtgtgggtga gggttagaac accccatcat tgagcctttg
    13321 ttctcaaaaa tttgcaccca ctgataatgc tctttcagct cattcgcttg ctcttgccaa
    13381 actgttacca catcagtaat ttcctcgatg gaaagttgcg gtaaggtttt actatgatca
    13441 ggcgaaaaac agatcacacg gctttcgcct tgtgtatgag aaatctgaaa cagcggatca
    13501 tcattcggta ttggtgccgg tgtgtctggt agcagggcag agaagtcgtt tttaaacaca
    13561 aacggcttgg tgtaattcgg gttttgttcg ccggtaatcc gcttattgcc ggggcagagg
    13621 taacaacttg ggtcgtagct cggtttttca tcttgcacga tttcttcttg ttgcccttgc
    13681 cacgggcgtt ttgcccgatg cggagagact aaaatccatt gattttttaa tggattaaaa
    13741 cgacgatgtg ggtgatcgtt gaggacaaat tcgctcatat aaaactcctc gaaattagtt
    13801 atgtaaagag tatagcgaaa gtcagacaaa atgactgtga catagctcac aaaataatga
    13861 tgtcaagcgg tcaaatttca gaaaaatttt gcaagttttc ctccattttg cgatttaagg
    13921 tagcttacgt ggaattgaat gtggcttttg gtagaataga tgaatatgca agatattaag
    13981 acaaaaatag atggaaagac tgaataaatt tgatgcttgg ttaatgaatc ataaacctaa
    14041 tgctaggtta agcggagcga gtcgtttgtt gacagagttt tggttctttg ggttaaaaga
    14101 agctagagcc tgtttatttg cgggattatt ttttattgcg atgttttcgg taccaaaaac
    14161 gggattatgg ggcttacctc gttatgatat tttgctgatt tttgccatag tggtgcaaat
    14221 tgcaatggtg aaactggggc tggaaacgtg ggacgagcta aaagcaataa gcctatttca
    14281 tttggttggt tttgtgttag aagtctttaa aacatcgagt aatattcaat cttgggcata
    14341 tccggatttt gcctatacta aattgttcaa tgtgccatta tttactggtt ttatgtatgc
    14401 agcagttggt tcttacatta tccaagcgtg gcggttgttt gatttgaaaa ttaaaagcca
    14461 cctgccctat tggttagcca ctttaacggc actgatgatt tacctgaatt tctttacgca
    14521 tcattacatt ggggattacc gttggtatat tgccgctttt gcattagggc tgtatgcacg
    14581 tacttttgta tttttcaccc cttatgacat tacacgaaaa atgccactgc tgctttcttt
    14641 cttcctgata ggttttttca tttggttggc ggaaaatatc ggtacgtttg ccggaatttg
    14701 gcgctacccg aatcagtttg gggcttggtc tatggtgcat atgagcaagt ggagtgcttg
    14761 ggcgttattg gtgatgatga cttttaccat cattgtgcat ttaaagcata tcaagcaaac
    14821 agtcagagtc tcgagcgatt aacaagctgt gggttttggc gaaaatttta ctcatcagtt
    14881 attttcagtg gaattagggg caaataataa tttgccccta tatcaaatta tggattttcc
    14941 ccttccacat caataatcat cacttccgac tgtgagccta accgcatcgg cacgccccag
    15001 aatccgtagc cggaggtgac aaaataatgc ccgaagccga ttttttcata gccgtaatgt
    15061 aatcgataga tcagtttggt aataatactt gcagggaaca cttgcccttt gtgagcgtgt
    15121 cctgaaactt gaatatcaat cggcaattta gcatgttgct caatttcagt cgggcggtgg
    15181 tcaagcaaaa ttaccggtag tttagtgttc acgttttgta aaagctgttc ggcagaaggt
    15241 cgatttttga ctaaatcatc attacgccca ataagggtaa attttccgtt aatttcggcc
    15301 gtttgatccc ataaaacagt aataccggcg tcggtaattt cttttgcaat cgtttcttga
    15361 gccccaaaaa agtcgtgatt gccaagggta gcatacacgc caagaggagc ttttaatttg
    15421 gctaaatgag gctgcatttt atcggcaaca taaacttcgg tattgtcgtc cataatatcg
    15481 cccggcaata aaatcagatc gactttttgc tggttgaaaa tctctgccag ttggtcaagt
    15541 tgcttggttc cgaacagttt tcctaaatgc agatcgcttg ccataccaat gcgaagcggt
    15601 ttctctaatg gtttatccaa tttcaccgaa taatgtacta ctgttggggt ataagcgttg
    15661 taatagccaa gcccaagtaa gccaaagaat gcaaatgggt aggcgatttt cagccagcga
    15721 ttgacggtag tattgccgtt gaatattttg taaatacaag cggtgaaaaa actgataaaa
    15781 aatgcaaaaa gtaacaatac caatatgaat gccattattc taaatagcgc aaaagtacga
    15841 gtaagatgca aaatcactaa tccgtttgcg actaagaaag tgagaatacc aactgtttta
    15901 cggtttttac ttgataaatt aaataaccag ctgacagtct ttgcaaagtt gaataaaaag
    15961 agttgtaaca ccgcaatcac aagggcggtg gtaatgtagt aacgatattc catatttttc
    16021 cttcaataaa ttggctaaac ccagccgatt tgtcttaata aaaataagcc gatgctggca
    16081 ctaaacattg agccgagagt cgtaatgccg atcagatttg cggctgcctc gccgtctccg
    16141 ccatagttgc gtgtcattgc gtaggtggct gaagcaacgg gagcagaagc agccacaaag
    16201 acaatgccta gttccatcgg cggaagttga aacacaaatt tcccgagtag tagcaagaaa
    16261 attggagcaa aaatcagccg aatcgaggca gaaaacagca caattttatt gatggtgctt
    16321 tccactcctt gattaaattg tttcaactgt ttgaaattaa tgcttgctcc ggtgcagata
    16381 agtgctaatg gtagtgtcag gctcgccatt aatttaccag cagactcaag cggggttgga
    16441 atttggtggc ttaattcaaa atagttaaaa gttaagcctg caatgacggc tagaatcagc
    16501 ggatttctca atatcgacaa tattaatctg ccaaaattca cttttttctc gcttaacgat
    16561 gaagtgaggg taatcactgc aagcacatta aaggtaatca ccaagcacga aatataaact
    16621 gaagcggcag cgagagcttt atcgccataa gcattgagaa ttaaggcaat gcctaaaatc
    16681 gccgcattgg tacggaaagt gccttgagtg aaaatacaac gataacggcg gttttcaata
    16741 tgtcgagccg cccaccattc cgcccataaa tagatcaaaa tcgaaccgcc gactccggtc
    16801 gagatcaggt tgatttggct ggagaaatct aacgggcttt ttagcatatt caagaaaatc
    16861 atcggtggca gggtaaaatt aaataccacc tttgatgcca tattgcaaaa ggtatcgtca
    16921 ataaattttc gtctgcgtgg aaaaataccg aacagcatta acaaaatggt tggtaaggta
    16981 acgccaatgc taaattggat agagtcgaaa agcataatgt ttgccttaaa tgatggcacg
    17041 agtgtctttt gcttgtaccg tagattatca ataaagtacc agcgtggacg ctggtactat
    17101 catcaatgga aatgaaatta caatcctgcc tttaagcttg cttcgacaaa tttatccaaa
    17161 tcaccgtcca gcacttgttg ggtggtgcga tgttccacac cggtacggtg gtctttaatc
    17221 cgtgaatcgt ctagcacata agagcggatc tggctgcccc agccgatgtc ggatttgttg
    17281 tcttccatcg cctgtttttc cgcatttttc ttgctcattt ccagctcata tagcttcgct
    17341 ttaagctgtt tcatcgcctg atctttattt tgatgttgtg aacgaccgtt ctggcactgc
    17401 accacaatgc cgctcggtat atgggtaatt cgcaccgccg attcggtttt attgacgtgc
    17461 tgaccacccg cccctgaggc acgatacaca tcaatccgca aatccgcagg gttgatttca
    17521 atatcaatat cgtcatcgac ttccggataa acgaaagccg ccgagaacga ggtatgacga
    17581 ccgttattgg catcaaacgg gcttttacgc accaagcggt gaatacccgt ttcggttctg
    17641 aaccagccgt aagcatagtc gccggaaatt ttcacggtgg cggatttaat ccctgccaca
    17701 tcaccgtctg aggcttccat tagttcggct ttaaaccctt tgctctctgc ccaacgcaaa
    17761 tacatacgca gtaacatttc tgtccagtcc tgagcttccg ttccacccga accggcttgc
    17821 aaatccaaat agcaatcggc actgtcgtgt gggccgctga acatccgctt aaattctaaa
    17881 tcggcaagtt ttttctctaa ttcgtctgct tccacttggg cttcattgaa ggtatcctga
    17941 tcttctgctt ccaccgccag ctcaatcaac ccttcaacat cttcaatccc ttgctctaag
    18001 gctttaatcg tattgacgat ctgctccaac attgcccgct ctttaccaag cgcttgtgct
    18061 ttttccggct tgttccatac atcgggttgt tccagctcgg cattgacctc ttctaagcgt
    18121 tcgactttat gctcaaagtc aaagataccc cctgatcacc gcggtgcgct cgcttaaatc
    18181 agttagttgg tttttaattg ggtttaattc aaacattgtc gttcctgttt ttgcttattt
    18241 taaaaagatg aattatagct gaagttaagc aagcggtcga attttgcaag aaatggagca
    18301 atgatcgttt ctagtaatga gatttggttc ataaaagttg caactgtttc tgctatttgg
    18361 ctttgatagc taaaaatctt taaaaaaaca agcggtcgtt ttaccccatt ttttgcaaaa
    18421 cgaccgtagc ttcttgctat aatcgctgaa aaaatgctgc aaggagattt tatggcaaag
    18481 cgcccaagtg atattgatgc aaccctattg caactggaaa tcctacgccg tatccccaaa
    18541 ttacccgcta aaattgatgc taaaagtttg caccaacagc tattagatgc cggctttgaa
    18601 cgggatattc gcactgttca gcgttcgctc aaaatgttat gcgagcattt tgatattgaa
    18661 tgcgatgagc ggagcaaacc ctttggttat agctggaaaa tccgctcaga ggggctggca
    18721 ttgccgattc tcaacgaaca acaatcatta ctgctaaaac ttgccgagca acagctgaaa
    18781 tatctgttac ccgcaaattt aatggcatca atgaaaccct tttttgagca ggcagacaga
    18841 atggtttccg gggcgaaaga caagcccgaa taccaatggc taaataaagt ttgctccacg
    18901 ccaaccagcc taccgctgat ccctgcaaaa attaaagaag agatttttaa ttccgtaagc
    18961 caagccttat ttcaaaataa gttgttaaag atcgaatatc agaaccagca cggcaaaaaa
    19021 caccaagcga caattatgcc gttggcgatt tcacaacaag gtgcgagcat ttatttggtc
    19081 tgccgttacg aagggtttga cgacaaccgc ctgttggctc ttcaccgcat tcgtaaagcg
    19141 gagatttcta cttttagttt tgaacgcccg aaagatttta atttgcaagc ctaccaagat
    19201 gccggacacc tcggttttgg caatggcgaa aaagctagcc ttaccttttc gattagcaga
    19261 gacgccggtt tccatttaac cgaaacaccg cttgccaaag atcaaaaaat tctcgaggag
    19321 agtgaaactc actaccgtat tcaagccata gtcgctgata atgatatgct aacctggtag
    19381 ctacgcaaat ttggcgaaga tatttgggat atcgagaaag aagcgctaaa ataagctaaa
    19441 caagcggtcg gttttgtggg aatttttgct aaatagtatc gaccgctcct ccctaaacag
    19501 acctttatca taaatacaac tctttcaatc agatattctt actgtctatt gatgaacgat
    19561 tcgaattttt ctagtggttg aaatttaaac taattttctt gctttttggc atttttcaga
    19621 cttttaattc tctccattag cctgtttttt tacgctcttt ttcataaaca ggaataacca
    19681 atgccttttc aacttacttt ctgccaacaa gccggcaatc agcaccagaa aaatcaagat
    19741 gcactgttta acggcaaagc ggtgtaccaa tggcaactta aaaatgccga gagttatctg
    19801 ctggataacg acaaagtaat ttttggggtt gcggacggcg tttccagcca ccctcgaaat
    19861 catcttgcct cacattattt aatggcgtta ctcagccaat gccaatccct tgatagccaa
    19921 tggttgcgac aggctcacgg cgatttttgc gaaaaattag cgaaagatta ttttggtgct
    19981 tcttgcactt ttgttgcttg tgaattacac cataacggca gagggcgtat ggttaatgtg
    20041 ggcgacagtc gagcctataa aattacggca aacggggagt ggcaacaact gagttttgat
    20101 cacaccatac tggctgaaat gaaacagaaa ggcttggtta aggaagggag caactatgcc
    20161 tcaatgtata acggcttaac cgattgtatt gttgccgatt ttgacgccga tgatttccgc
    20221 attcatatag ccgaatttca actggaaaaa ggcgagagca ttttgctctg ttctgacggt
    20281 ttgcacgaac aactcgcccc agaagctatt caggcgattt aggacggata cgaaagcccg
    20341 tctcatcgtc tgcaaatttg cagaaaaatg gtaaaaatgc accgcttgta tgacgatttt
    20401 tctgcggtga tttgtgaaat tgtgtaatta aaacgacatt atttgtcgca ttggtgctta
    20461 aaatccgcat aaaacagagg agaaaaaaat gaaaaacgat ttccattatg ccgctgaatt
    20521 aatccgcaat gcagacggca ttttaattac cgcaggggct ggaatgtcgg tggacagtgg
    20581 cttgcccgat ttccgtagcg tgggagggtt atggaattcc tacccaccgc tcaaaaaatt
    20641 taatttgcaa tttatgcaga ttgccacacc gcttgcctat caggaacgcc ctga
//
LOCUS       DANLXB010000016        20478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLXB010000016 DANLXB010000000
VERSION     DANLXB010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            9..1616
                     /gene="pckA"
                     /locus_tag="PXD41_000400"
     CDS             9..1616
                     /gene="pckA"
                     /locus_tag="PXD41_000400"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL6287967.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            1709..2710
                     /gene="bioB"
                     /locus_tag="PXD41_000401"
     CDS             1709..2710
                     /gene="bioB"
                     /locus_tag="PXD41_000401"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL6287968.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            2870..2967
                     /gene="ffs"
                     /locus_tag="PXD41_000402"
     ncRNA           2870..2967
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXD41_000402"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3002..3709
                     /gene="gloB"
                     /locus_tag="PXD41_000403"
     CDS             3002..3709
                     /gene="gloB"
                     /locus_tag="PXD41_000403"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL6287969.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            3868..4581
                     /gene="uppS"
                     /locus_tag="PXD41_000404"
     CDS             3868..4581
                     /gene="uppS"
                     /locus_tag="PXD41_000404"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL6287970.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4605..5474
                     /locus_tag="PXD41_000405"
     CDS             4605..5474
                     /locus_tag="PXD41_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL6287971.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5478..6788
                     /gene="rseP"
                     /locus_tag="PXD41_000406"
     CDS             5478..6788
                     /gene="rseP"
                     /locus_tag="PXD41_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL6287972.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            6903..9284
                     /gene="bamA"
                     /locus_tag="PXD41_000407"
     CDS             6903..9284
                     /gene="bamA"
                     /locus_tag="PXD41_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL6287973.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTKNGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            9364..10155
                     /locus_tag="PXD41_000408"
     CDS             9364..10155
                     /locus_tag="PXD41_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL6287974.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            10155..11180
                     /gene="lpxD"
                     /locus_tag="PXD41_000409"
     CDS             10155..11180
                     /gene="lpxD"
                     /locus_tag="PXD41_000409"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL6287975.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            11209..11667
                     /gene="fabZ"
                     /locus_tag="PXD41_000410"
     CDS             11209..11667
                     /gene="fabZ"
                     /locus_tag="PXD41_000410"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL6287976.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            11701..12495
                     /gene="lpxA"
                     /locus_tag="PXD41_000411"
     CDS             11701..12495
                     /gene="lpxA"
                     /locus_tag="PXD41_000411"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL6287977.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(12533..14533)
                     /gene="mnmC"
                     /locus_tag="PXD41_000412"
     CDS             complement(12533..14533)
                     /gene="mnmC"
                     /locus_tag="PXD41_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL6287978.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(14758..16194)
                     /gene="trpCF"
                     /locus_tag="PXD41_000413"
     CDS             complement(14758..16194)
                     /gene="trpCF"
                     /locus_tag="PXD41_000413"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL6287979.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            16282..16593
                     /locus_tag="PXD41_000414"
     CDS             16282..16593
                     /locus_tag="PXD41_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL6287980.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            16747..17475
                     /gene="truC"
                     /locus_tag="PXD41_000415"
     CDS             16747..17475
                     /gene="truC"
                     /locus_tag="PXD41_000415"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL6287981.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            17493..17657
                     /locus_tag="PXD41_000416"
     CDS             17493..17657
                     /locus_tag="PXD41_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL6287982.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            17650..18126
                     /locus_tag="PXD41_000417"
     CDS             17650..18126
                     /locus_tag="PXD41_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6287983.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(18163..19014)
                     /locus_tag="PXD41_000418"
     CDS             complement(18163..19014)
                     /locus_tag="PXD41_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL6287984.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            19075..>20478
                     /locus_tag="PXD41_000419"
     CDS             19075..>20478
                     /locus_tag="PXD41_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL6287985.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMF"
BASE COUNT         6362 a         4174 c         4063 g         5879 t
ORIGIN      
        1 taaccactat gttaaatcgt attgaacaag aacttgcaga cttaggcatt acaaatgtaa
       61 aagaaatcgt gcgtaaccct agctatgagc aactgtttga agaagagatg aaatcggatc
      121 ttaaaggtta tgaaaaaggc gtcctaacaa atttaggcgc agtagcggta gataccggca
      181 ttttcacggg gcgttcgccg aaagataaat atatcgtatt agatgaaacg acaaaagata
      241 ccgtctggtg gacatctgat gcagctaaaa atgataataa accgatgact caatctactt
      301 ggcaaagttt aaaaacctta gtgaccgatg agttatctaa taagcgttta tttattattg
      361 atgctttctg tggtgcaagc cctgagcatc gcatcaatgt gcgtattatt acccaagttg
      421 cgtggcaagc tcactttgtg aaaaatatgt ttattcgtcc aacagaagaa gaattaaaag
      481 atttcaaacc ggattttgtg gtaatgaacg gttcccaagt aactaacccg aactggaaag
      541 agcaaggctt aaattcagaa aactttgtgg catttaatat cacagaaggt gttcagatca
      601 ttggcggtac ttggtacggt ggtgagatga aaaaaggtat gttctctatg atgaactact
      661 tcttaccatt aaaaggtgtc gcttcaatgc actgttcagc caatgtgggc gaagaaggtg
      721 atgtggcggt tttctttggt ttatcaggaa ccggtaaaac gacactatca accgatccga
      781 aacgcaaatt gattggtgac gatgaacacg gttgggacga aaacggcgta tttaactatg
      841 aaggtggttg ctatgcgaaa accatcaacc tttctattga aaacgagccg gatatttatc
      901 gtgcaatccg ccgtgatgcg ttattagaaa acgtggttgt gcgtgaagat ggcactattg
      961 attttgatga taaatcaaaa acagaaaata cccgtgtgag ctatccgatt tatcatattg
     1021 ataatattgc cgtgccgtca aaagcaggac acgctaaaaa agtgattttc ttaacggcag
     1081 atgcattcgg cgtattgcca ccggtgtcta aattaacgcc tgaacaaact aaatactact
     1141 tcttatcagg ctttaccgca aaattagcag gtacagagcg tggtattact gagccaaccc
     1201 caactttctc tgcttgtttc ggtgcggcgt tcttatcact ccacccgaca caatatgctg
     1261 aagtgttagt gaaacgtatg gaagcagccg gtgcggaagc ctatttagtg aataccggtt
     1321 ggaacggcac aggtaaacgt atttcgatta aagatacacg gggtattatt gatgccatct
     1381 tagacggctc aattgagaaa gcggaaatga gtacattacc aatcttcaat ttagcaattc
     1441 caactgcgtt accgggtgta gaaacccaca ttttagaccc tcgtaacact tatgaagaca
     1501 aagcacaatg gcaagctaaa gcagaagatt tagctggcag atttgtgaaa aactttgaaa
     1561 aatatgcgac caacgaggaa ggcaaagcat taattgctgc tggtccgaag ttataagttg
     1621 taattataag ttataatcgc taaaaaatta gtttaggact aaaccttgaa tgaggtttag
     1681 tccttttgta taaaggagaa gtacaataat gacaacattc caattaaggc tgaaagccaa
     1741 agatgagctt accccacacc caacagcaca atattggcga aaatgccaag tggaaggact
     1801 atttgatctg ccgtttatgg atttagtgtt tagagcggca caagttcacc gtgaaaattt
     1861 tgatgctaat gcgatccagc tttcaacgtt actctcaatt aaaacaggag gctgtccgga
     1921 agattgcgaa tattgccccc aatctgcccg ctatgatacg ggaatagaaa agcaaacaat
     1981 gcttgatgta gagacgattg tagaaaaagc taaaattgcc aaagagcgtg gagcaagccg
     2041 cttttgtatg ggggctgcgt ggcgaggacc taggcctaaa gatattaaag tagtctcaga
     2101 aatcatcaat gcggtgaaat cattggggct agaaacctgt ggtactttcg gtatgcttga
     2161 agagggaatg gcagaagaat taaagcaagc agggctggat tactacaacc ataatttaga
     2221 taccgaccct gaacgctata acaaaattat ccatacccga aatcacgaag atcgaatgga
     2281 cactttaggt aaagttcgca atgccggctt gaaagtttgc tgtggcggta ttgtgggaat
     2341 gaacgaaacc cgccccgagc gagcaggcct aattgcaagc ctcgctaacc tcgatcctca
     2401 acctgaaagc gtaccgatta atcagttgat taaagtagaa ggtacaccgc ttaccaatgc
     2461 cgaagattta gactggacag aatttgttcg taccattgcg gtagcaagaa ttactatgcc
     2521 tcaaagcttt gtccgacttt ctgctggcag aactactatg ccggaggcaa tgcaagccct
     2581 ctgttttatg gcaggagcaa attctatttt ctatggcgat aaattactta ctacagaaaa
     2641 tccggaagaa gatcatgatc gccaattaat ggataaatta gatttatatc cgctacaata
     2701 tatagcctga gtgccaatga ttttcgcctg aatgaaaatt aaagaatcaa tcgttatttt
     2761 acgcaaattt ctaacataaa ataaccgctt gcaaaattcg ttcttgtctt atttttaaat
     2821 ttatctataa tgtgaggcct tacgcaagct tgcgtaattc gatggggcgt tattggttcc
     2881 tcgcaatggt gttcagctta cttgatcagg ttcggaagaa agcagtctgg gttgaaattt
     2941 ccgtgtgccg agggaggctg gtaatgcccc accctttttt cagttctatc aggagaacgt
     3001 tatgctccag atcaccccca ttccggcatt aaaagataat tacatttggg caatccgtaa
     3061 cgggcaagat gtgattatta ttgatccatc agaacatcag ccagcattaa actttattgc
     3121 aaaaaatgcg ttaaatttaa ccgctatctt gattacccat aatcaccacg accatactga
     3181 tggggtgagt ggtattgttg agcaatatcc gaatatccct gtttatggtc cgcaagaagt
     3241 ggctgaattt gccaatgtga ttgtctcgcc tgaacaacat atcagcctgt ttggttatga
     3301 tgtaaggatt attgaaagtg gtgggcatac cgcagggcat atcagttatt tatttggcta
     3361 tgattatctg ttttgtggcg atgcgttatt ctccggcggt tgcgggcggg ttttcaccgg
     3421 tgattaccaa gcccaatttg atgcgttaca acgctttaaa aatctgccta actcggttaa
     3481 agcctacccg gctcacgaat acaccaagag caatttgaaa tttgcagaag cggttctacc
     3541 accaagctgt gtattatcgg aatatcaaga acaggttgat cttttacgtt cgcaaaacaa
     3601 accgactttg ccaaccacta ttggcttgga aatgcaggtg aacccgttta tgcaagcggt
     3661 cgatttagcc gaatttattg cacttcgtca gcaaaaagac aatttttaac ctcatatttc
     3721 taattaagca ttaaagcctc tcactttaat gctttttggt taaataaaac ctttgcaaac
     3781 atcgcttgtc aattccactc tggcttatcc tatggtatag ttacgactat ttttagctta
     3841 atttattatt ttagtgagta aaattctgtg aacttcgatc ctcaaaatat gcctaagcac
     3901 gttgccatta ttatggatgg caatggcaga tgggctaagc agaaaggaaa attacgcatt
     3961 tttggtcatc agaatggtgt aaaggcagtt cgttctgcag ttagttttgc agcaaagcat
     4021 catatccaag ttttaaccct ctacgcattt agcagtgaga attggagcag accagaaact
     4081 gaagtttcag ctttaatgtc tctgtttatg aaagctttag attctgaagt taaacaatta
     4141 cataaaaata atattcgctt aaagattata ggcgataaat ccgcctttag cgaaaattta
     4201 caaaaacgca ttgccgaatc ggaaaaatta accgaaaaca atactgggct aatcttaaac
     4261 attgctgcca actatggtgg ttactgggat attgttcaag ctgctcaaca actagcagtg
     4321 cacgttaaat ctgaacaact tgctgtggag cagattacac cagcattgtt tcaacaacat
     4381 ttagtgacag aaaaccagcc gcaagtggat ttattaattc gaaccagtgg tgagcagcgg
     4441 atcagcaatt ttctattatg gcaaattgct tatgccgagc tgttttttag cccggtttta
     4501 tggcctgatt ttaatgatga ggcttttagt gatgcaattt atgcttatca gcaacgtgaa
     4561 cgccgattcg gtggttgtta atataaaaag aataaggaaa tacaatgctt aaagaacgtg
     4621 tactttcagc gattattatg attattgccg tgctggctgc catattttgg ctctcaccac
     4681 ttcctttaac tttagtgtta tcggcaattg ttgtggctgc aatgtgggaa tgggctcaat
     4741 ttgccggctt taaacaccct gtgccacgtg caattgtggc aatggtgaca atctgcttat
     4801 tactttttgc gatcgttgcg aatactgatt atatccgagc cacccgtttt attactgatg
     4861 agactacccc tatcctcttt attggctgta tttggtggtt aattgccctt gtcctagtgg
     4921 caacttaccc caactcggca aaactgtggg aaaaatctgt tgcagctaaa ttcctatttg
     4981 gacttgctac cttagtgccg tttttaattg gcacgctcgc attgcgtttc cataattatg
     5041 catttgatcc ataccaagga acttatttat tcctttacgt ctgtttatta gtttggggag
     5101 ctgattcagg tgcttatttt gctggcagag cctttggcaa aagaaaactt gccccaaaag
     5161 tatctccggg taaatcgtgg gaaggcgtaa ttggtggcgt actcacctct agtttgattg
     5221 cctttacctt tttacaactt acaccggcaa atgtattcgg caaagcatta gccactaccc
     5281 catttatttt agtttcggtc ggtatggttg ctatttcagt cttaggcgat ttggcagaaa
     5341 gtatgtttaa acgccaagca ggcattaaag acagtagcca gttaattcct gggcatggag
     5401 gtattttaga tcgtattgat agtttaaccg ctgccgttcc gttttttgct acattcttct
     5461 tttttgtact atagaatatg acgtccatca ttgcattttt tattttaatt tgcgtactgg
     5521 tttttgtgca tgaatacggg cacttttggg ctgctcgcaa atgcggggta aaggtgatcc
     5581 gtttttcgat cggatttggt aaagtcttat ttaagaaaaa agataaacaa ggaaccgaat
     5641 ttgttttttc acttattcct ctgggcggct atgtacaaat gtggaatgat gaaacggata
     5701 tcaacgctcc agctcaacaa gctcttaaca caaaatctgt attgcaacgt gcatttatta
     5761 ttatagccgg tcctgctgca aattttattt ttgcgatttt ggcatactgg gtcgttttta
     5821 ttgccggtat tccaactgtt aaacctgtta ttggggaaat tttaccaaac actatcgcct
     5881 cccaagcaag aattcctacc gaattggaaa ttacaaaaat cggtcatcaa tctatccaag
     5941 attgggaaag tgcatcttta gcactagttg gttttgtggg caataaaaat gtaccgttag
     6001 agggaaatat caacggcaac tcaacacaaa aatatgaact cgatttatct aactggagta
     6061 ttgactcagc caaagaaaac ccattaaccg cattaggtat tcgccccaaa agtgcaaaag
     6121 tcaccgctga aattaaacaa gttgtcgaaa attctcctgc aagccaagtg ggtattcaag
     6181 caggtgatcg tattcttcaa attaaccagc agccatttaa ttggttcaat ttagttgaac
     6241 tggtacaagc aggtaaacct attgaactta aaattgaaca acgaggtcag attaaagacc
     6301 ttgtcgtcca accagaaaaa aaagacgaac gctatattat cggggtaata ccaagttatg
     6361 agcctcttgc agataaatat cgtaccgaat taaaatatga tattcttacc gcattttata
     6421 aaagtatcga aaaagtgtgg tctcttaccc aaaccatact ccaatttatc ggtaatttaa
     6481 taagcggtga tttgtccatt aaaaatttag gtgggccaat ttcaatggca aaaggagccg
     6541 gtgcaacagc tgaaatcggc ttagtttatt accttagttt tatggctcta atcagtgtca
     6601 atttgggggt aatgaactta tttccacttt tacccttaga tggtgggcaa cttgttttat
     6661 tggctgttga agcaattcgt ggaaaagcat tatcagaaaa aatacaactc aaattccaac
     6721 aaattggatt tgcattcgtg ctgagtttaa tgttattcgc ctttgccaac gatataattc
     6781 acttttaaca agcggttaaa aaaggtgact tttttgcaaa aagcaccctg acatcaaaat
     6841 ccataatatg gatttaaact atattcttaa taattttgca aaacgatcat aggataattt
     6901 caatgaaaaa attattactt tcctctcttt taattgcaaa cggtgtagtt gctgcacctt
     6961 tcgtagtaaa agacattcgt gttgaaggtg tgcaacctac aacaggcgaa tctatcattt
     7021 catctattcc ggttagagta ggtcaaacag caacggatac tgacgtatct aatgtcgtcc
     7081 gccatctatt cagccaacaa cgttttgcag atgttcgtgc aacacgagaa ggcaatacgc
     7141 ttgtcatcaa agtcgctgaa aaaccgatta ttggcaaggt agagatcgaa ggtaaccaag
     7201 cgattcctaa agatgcctta gagcaaaatt taaaggcaaa cttaattaac caaggtgaaa
     7261 tttttgatgc tgccaagctt gaagctttta aagaaggact aatcgaacat tatcactcta
     7321 ccggccgtta tgaagccaaa attgacacat ctgtttcgaa taacaccgaa ggtggcgtta
     7381 atattaagtt agcgattaat gaaggtgaag ttgctaaagc caaaacaatt aagtttgaag
     7441 gtaataatgc cttctctgat aaaaaattat tagaaaactt agatattcaa cctgatgttt
     7501 cttggtggaa tatttttgaa agtagcaaat tcgaacaaac cgcctatcaa aaagacttag
     7561 aaacattaag agatttttat ttaaatcgtg gctatgcaaa atttgctatc caagataccg
     7621 atgttcaatt caatgataat aaaacggaag ttgcattgac ctataaatta gatgaagggt
     7681 cacagtacca tgtcagtgaa atgcgcatta tcggtaatac agccaatatg gatagccagc
     7741 tcaacgccct actaaaagaa ttcaagcctg gtcaattatt ccgtaaatca gaccttacac
     7801 aaattgaaga agagattaaa tctattttag gggacgcagg ttatggttca gctaaagtag
     7861 atatttatcc tcaatttaat gaagaaaata aaaccgtaaa aatcagtttt gttgtggatg
     7921 ccggtcgtcg tatttatgtt cgtaaaatcc gttttgaagg taatggtgtc actgcagatt
     7981 caacattacg tcgtgaaatg cgccaacaag aaggtgcttg gctttccaca aacaaagctt
     8041 ctctaggtaa agctcgttta gaaagaaccg gtttctatga aagtgttgat atgtcaatgc
     8101 caaatgtaga aggtacagcc gatcaagttg atgtagtgta taaaattaaa gaacgcaata
     8161 ccggtagtat taactttggt atcgggtacg gcacgaaaaa cggtatcagc tatcaagcag
     8221 gaattaaaca agataatttc ttaggtatgg ggtcaactat cagtctaaat ggtacccgta
     8281 ataactacgg taccagcgtt aacctaggct ataccgaacc ttactttact aaagatggtg
     8341 taagtttagg cggtaatatt ttctatgaag attatgataa ctcagacaat gattcaatgg
     8401 cttcatataa acgccaaacc tatggtatta acggcacatt aggcttcccg gtaaatgaaa
     8461 ataactcata ctacttaggt ttaggctata cgcacgataa aattaaaaat gcagcacgtg
     8521 agtacactcg tgagaaatat gtaaaatcaa tgaactttga gttcgatcca gctgccgatt
     8581 attacaaaaa aatcaaagct gatgattttg atttttctct cggttggaac tacaacagct
     8641 tgaatagagg ctatttcccg actgaaggaa ctaccgcaaa cattggcggt aaaatcacaa
     8701 ttccaggctc tgataataaa tattaccgag tcagtgcaga ctttagaaat tattacccgt
     8761 taaaccgtga gcacaaatgg gtaatttcaa cgaaagctag cattgcttat actaatggat
     8821 ttggtggtaa agaagttccg ttctatcagc tttatactgc cggaggtatt ggtacactaa
     8881 gaggtttctc ttacggtgca gtagggcctc aagcgattta ctataataca aaatccggca
     8941 aatttgatag catgaataat gatattatcg gtggtaatgc gttagctgcg gcaagcttgg
     9001 aattaatcac accaacgcca tttgtgagcg aaaaatatca gcacaatgta agaacctctc
     9061 tctttgttga tgctgcaagt gcatggaata caaaatggaa gaaagatgaa tatacgaact
     9121 tgcctgacta tggtgatttc aaacgtttcc gtgcttccgc cggtattgca ttccaatgga
     9181 tgtctccaat cgggccatta tcattctctt atgcgaaacc aattcgtaaa tatgataatg
     9241 atgatattga acaattccag ttcaacattg gtagttcatt ctaattaacc acaagcggtt
     9301 aataaatgta aaaaatttgc aacttagccg cttatttcaa aactgttcat acaaggaaaa
     9361 caaatgaaaa aattatttaa aatgactggc ttagccgtag ctttagcctc tacaaccgga
     9421 atcgcgaatg ctgcagatac tattggtttc gtagatccaa gctatgtatt acaaaaccac
     9481 cctgtattat tagatgcttc ggcaaaattt gataaattca tgaaagaaag ccaagaaaaa
     9541 tttgctgctg atgaaaaaaa attagcagat gaaaataaaa ccttaacggc tgagcgcaat
     9601 aaaattaatg aagatgcgca aaaattacaa aatgaacaaa aaaatgtaga agcttctatc
     9661 aagaaaaaag tggcagcatt agagaaagat gcgcctcgct tacgttcaaa agagattcaa
     9721 gcacgtcaaa atgcgattca aaaagaagca aacgcattcc aagctaaagt aacagcaatt
     9781 caaaaacgtg aagctgattt tgcaaaaaaa gcagaagcct tccagaaacg tgcagatgaa
     9841 ttccaaaaac gtattgaaca agcgaataaa gaaaatggtg gcattaaccc acaagaagcg
     9901 caaaaacaag cggttgatga agtaaatgca accattaaag agatcgcaaa atcgaaaggt
     9961 tacactttag tattacaacc acaagtagca ctttatgctg aagatgaagg taaagatatt
    10021 actgaagcag tacttgatgc tattgttaaa aaacatccgg aaattaaaat agaaaaacct
    10081 gcaactgaag ctcaaccagc tacagaaaaa gaaaccaaag ctgaagaaac taaaccagaa
    10141 gaagcgaaaa aataatggca aatttccgtt taattgattt agcggagcat atcggcggta
    10201 ctcttagggg taacgccgat ttggctattc aaagtattgc tgctttagat aaagccgaca
    10261 gctcgcaaat tacctttatc tcaaatgcaa aatatcggga aaatttgacc gcttgcaatg
    10321 ctggagctat tatcgtcagc ccggcagatg tagaattttg ccgagcagat caaaatctta
    10381 tcatcgttgc caatccgtat gttgcttatg ctcaactggc tcaatatatg gattctactc
    10441 cgaaagcagc gagcgaaatc cacccaagtg cggtgatttc acctgaagct aaactgggta
    10501 ataacgtatc ggtaggggca aatgccgtga ttgaaagtgg cgtagaattg ggcgatgatg
    10561 ccgtgatcgg tgcaggctgt tttgtgggaa aaaacagtaa aatcggggca agaacccaac
    10621 tttgggcaaa tgtttcggtg taccacaatg tacaaatcgg agctgattgc ttgattcaat
    10681 cctcaacggt tatcgggagt gatgggtttg gctatgcgaa tgacaaaggg caatggatta
    10741 aaatcccaca aaccggtggt gtgattatcg gtaatcgtgt tgaaattggt gcttgcactt
    10801 gtattgaccg aggtgcatta gatccaaccg taatcgaaga taatgtgatt attgataacc
    10861 tttgccaaat cgcccataat gtacacattg gttttggcac tgccgttgcc ggcggcgtca
    10921 ttatggcagg cagtctaaaa gttggtcgct tttgccaaat tggtggagca agtgttatca
    10981 acggtcatat ggaaatctgt gatggtgcca taattaccgg aatgggtatg gttatgcgcc
    11041 caattacaga aaaaggaatt tactcatcag gtattccatt acaaaccaat aaagaatggc
    11101 gaaaaaccgc agcacttgta atgaatattg atgaaatgaa caaacgctta aaatcgttag
    11161 aaaaacgttt taacgattaa ttttattaga ggtcttaaag tgacagaaat gacaactgaa
    11221 aatcgtgagc caaatattat tgaagtaacc gaaattatgg atatgttacc gcatcgctac
    11281 cctttcctgt tagttgatcg cgtaaccgat tatgaagaag ggaaatggtt aaaagccatt
    11341 aaaaatgtaa ccttcaatga accttgtttt accgggcatt ttcctggcgc accaatcttc
    11401 ccaggagtat tgattctgga agcaatggct caagcaactg gcgtattagc cgttgccact
    11461 tatggtaagt taagtgaaga cgaactctac tattttgccg caattgacaa tgctcgcttt
    11521 aagcgaccgg ttgtgccggg cgatcaactt caacttgagg ttgaatttct taaagaagta
    11581 cgtggtatta ctaaatttac cggtaaagca tacgttgatg gcaaattagt ctgtgaagca
    11641 gatttaatgt gcgctcgccg taaataattc gatataagcc caaactagag ggaacaaact
    11701 atgcgtctaa ttgattcaac agcaaaaatt agcccgcttg ccatcattga agaaggtgct
    11761 gaaattggcg ctcacgttga aattggtcca ttttcagtca tcggtaaaga tgtcaaaatc
    11821 ggggctagaa cgaaaattca ctcaaatgtt gtcattaacg gcatgactga aattggtgaa
    11881 gataaccata ttttccaatt tgccagcatt ggtgaaatca accaagatct aaaataccaa
    11941 ggtgaaccaa ccaaagtggt gatcggtaat cgtaaccgta ttcgtgaaag tgttactatt
    12001 caccgaggta cggtacaagg cggtggcgtg acgaaaatcg gtgatgataa cttatttatg
    12061 atcaacaccc acatcgcaca cgactgctct atcggtaacc gttgtattat cgccaataat
    12121 ggtacgctag caggtcacgt taccctagat gatttcgtga ttgtgggagg aatgtccgcc
    12181 attcaccaat tcgttgtgat tggttcacac gttatgcttg gaggcggttc aatggtcagc
    12241 caagacgtac cgccttatgt catggcacaa ggtaaccacg cacgcccatt tggtattaac
    12301 tttgaagggt taaaacgtcg tggctttgat aaaccaacta tgcacgctat tcgcaaagtc
    12361 tataaactga tttactccag cggaaaaaca ttggaagagt gcctagtaga aattgagcaa
    12421 attgcagcaa cagaacctgc gattgctatt tttaaacaat tcttcaaacg ttctacccgt
    12481 ggtattattc gttaataaac gaaaccccga aatcaattcg gggtttgttt tatcaagcga
    12541 ccgtcgaacc tttcaacaat tttcgaatcc aagctcgatt tgggctaagg ttatgccaaa
    12601 tatcctcact gattggcaca ggctcattca caatcaggct tgctaacaat tcccctagaa
    12661 gtggtgcagt cgtcaaacct cgagaagaca ggccgtttac catatacaga ttggtaaaaa
    12721 tttcagcatt ttctaccgct tgtttccgtc tcaactggtt gtataaattg gcatattggc
    12781 ttttttgctg ctcaaaatga tgcactgccc caaccatcgg tacacgatca cgaaacgccg
    12841 cacgaatacc gactttggct ttattttcag ataaatcaat tccttgcgtc cactcacaaa
    12901 cggttacatt ttgctgaagt tttgcaacat tctcccaatg ctccgataaa ctaaactcgg
    12961 tttctgcatt atcccgaata tggcttgctc caatgcaatg cgtgccatag gctgacattg
    13021 gcgttaaata accatcataa caaagcacac acttcagttt ttgtaattcg cttgtagtcg
    13081 gaatttggct cacttgccct cgtaccggat acaacggaat gccgttcgct tggctaaatt
    13141 cattcaacgt atgtccattt gccagcacaa ccgcttgatg tcgaaccgtt tctcccctcg
    13201 tctgccattg ccacattcca ttagaaaagg ttaaatgctc aactttgtga ttcagtacaa
    13261 tcttcaaccc tttctgctcc agccaagtaa agccatttct aacaagttgt accggtgaaa
    13321 gccaaccagc ttgcggaata aatgccccgc tgtttggcac gcttaaacct aatttttcac
    13381 ttaattctgc ctgtgaacaa gattttaata aggtgtcatc agccgtctgc tccaccattt
    13441 tttccagttt tttagccgtt ttctcgtcat aggcgtaaag cactaccccg cttaaattat
    13501 gctcaaactc aatgttggat ttcagttgtt gcaagcgttg caatgcataa tcaaaactat
    13561 ggatataaaa ctgtacattt cgctcgtcat catcgcttaa ctgtgggtaa atcgcccctt
    13621 gtaaatttcc tgaagcattt attgccaagg tttcatcttt gcaatacagc gtgacttgct
    13681 tgcctttttc taacagcgat aacgcaacga agaaactcgc tactccgcca ccaataattg
    13741 caatgtcatc agcggtttca tttttggcat aaaaataggg gtaattaggc tcggaaactt
    13801 ggctatctaa cggtttctcg ccccaaagca tttctcgttt tttgccaaat cctttgcgtt
    13861 ttttcactgc aaaacctgcg gcttccagcc ctcgtctgac catacttgaa gcggtaaaag
    13921 tagcaaaact gccgccattg gcacttagtc gaaacatttg cagatataac tgttcgttcc
    13981 acatttctgg gtttttatca ggcgaaaagc catctaaaaa ccaagcgtca atcgtgccgc
    14041 tataaagatc gcctaattgg ggtaagtttt cagcaatctc accgaaccat aaatctaaat
    14101 aaacctgctc aaaatgataa cgttggcaac ctatttggcg aggctgccaa caagcggtta
    14161 aattttcaga taatgttgca aattgcggat agcgttggtg aatatcagct aattggctgg
    14221 ccgtcagagg aaatttctca aatgagataa aatagagtcg ttttagttta ctttgcggaa
    14281 atgctgcccg aaactgttgg aatttgtcag caacggctaa aaaattcaag cccgtgccaa
    14341 agccggtttc cgcaataaca aaagcctctt tcgggtgaga ttgccacttt tcccacagtt
    14401 ggttaccttc ttgaaacaca tagtaacttt ccgccaaacc atcttgggta gaaaaataaa
    14461 tatcatcaaa ttgctccgac accggtgtat ctgcatcatt aaatgtaagt gtcgcaaaag
    14521 tcagtttacc catcatatcc ccttaaaaac aaaacacgga aaaccccaag attttccgtg
    14581 tttcaaccag ttcaatagta ccaatgttag aaaatgttgc tggcaaaaat aacgatcata
    14641 ccaagtgcgc ctacaaccgt tagcattgaa taaccaaaag tacccatttt acaatcctca
    14701 ttgttaatta tgattaaaac ggctttattc tagcataatt tccatcgctt tgaatgccta
    14761 tgcttgaata attttgccaa aacaagcggt caatttttgt aaatctttta cgcctttggc
    14821 actttccacg ccagaattta aatctaaccc gacacagcct tgagcaaggg cttgctcaat
    14881 attctcagtg ccaataccac ctgccaataa cgctttttgt tttaaggttt ctggaatcaa
    14941 cgcccaatta aaggttttgc ctgtgccgcc ttgctgattg cctactttgc tgtctaatac
    15001 ataacgagca atctgtggat tatcgttaaa ttctagattt tcaacctcaa catcaaccga
    15061 taaggctttc cagatttgag ttttactacc taatttctct gccagttctg caatgtattg
    15121 ctcatcttcc gagccgtgca attgaactgc aaataactca agctgttttg ccattttttc
    15181 cacaaattcg accgcttgat tttggaacac ccccacataa cgcaacggtg cattcaccac
    15241 caattcttgg gcttggcgaa gtgaaagctg gcgaggcgag ccttcggcaa aaattaaacc
    15301 gccatataat gccccttgct cataaaccgc tttcacatct tgcacacggg ttaagccaca
    15361 cactttgttt tcaccaaaaa tcaccgcccg caccgcatta ttgagatcgg cacttcccat
    15421 taaactgctg ccgattaaaa aagcatgaac atacggctta atgtttttca cttgctggtg
    15481 atcgttaata cccgattctg aaatcaaaca gacatcagcc gaaatttggg cttggtattt
    15541 ttccaccaaa cgcacaatgc ggttcatatc aatcgtgagc gtgtgcaaat cacggttatt
    15601 aacgccaatt accttcgccc ctaaggctaa ggcacgttca aattccgcct ccgtgctggt
    15661 ttcagtcaaa acgcccattc ctaactcgtg agccagtgtg gcaagttcac ggtaggtttc
    15721 atcatttacc accgataaca tcaataaaat cgcatcagca ttataaaaac gggcaaggta
    15781 aacctggtat gccgaaatca taaaatcttt acacaaaatc ggctgtgtgg tttggcgttt
    15841 gacttgatcg atataacgga aatcgccttg aaaatattgc tcatcggtta aaaccgaaat
    15901 cgccgcagcg taatttttat acacttgggc aatactgtct aaatcgaact cagcacgaat
    15961 taaccctttt gacggtgaag cttttttaca ttctaaaata taagctggtt cttggtgtgt
    16021 gcctttggca agagccgcat agaaatcatg gtcgcttttt acaattttgt gctgaaattc
    16081 acttaacgga aaggcttgct ctttttgtgc cacccaaatg gctttatctt gtacgatctt
    16141 ttgtaaaatc gtcggttggt ttggttgagc gttatcttga acgatgtttt gcatataaat
    16201 tcctagagcg aaatcggttt gaatggtaaa atctgccctt atttttaccc gaaaaagtct
    16261 catttcacaa gcaaaactaa gatgaaatca caagttatac agcatttatc ttatttagaa
    16321 atcgccctga gagttaatca actttgggag gcgacaccac caagccctga agccttagcc
    16381 aatgagcaac ctttctgcgt ggaaacctta accccaaccc aatggctaca atggattttt
    16441 attcccagaa tgcgggccat tttagatgca aatgccgatt tacctcgcaa ttttgcaatc
    16501 accccttatt tagaagaggc attgaaaaac gaaggttatt tacaagcgat ttgtgaaccg
    16561 ctattaggtt tggaaaagtt gttgaaagat taacttctct ctcagttctt ttattaatct
    16621 gacaaattcg ttgatagtgc cagcgtccac gctggtacta attttaacgg ttaattaatc
    16681 aaaatttggc acaagcgagg acgcttgcgc catcatagag atttgataaa ttatacttaa
    16741 tgtattatga ccttagatat tttataccaa gacaactcgc ttatcgccat caacaaacct
    16801 gccggagtgt tggtgcatcg ttcttggtta gataaacacg aaacggtgtt tgcaatgcaa
    16861 accctgaggg atcaaatcgg gcaacacgtt tttccgattc accgccttga ccgcccaacc
    16921 tcaggtgtat tgctgtttgc tctcaacagc gaaaccgccc gaataatgag cgagcagttt
    16981 gaacaacacc tagtacaaaa aacttatttg gcggtggtgc gtggctattt acaaggttcg
    17041 gcacaaattg attatccgct caaagtgatt ttagataaaa ttgcggataa attttctcag
    17101 gaaaaagagg ctcaagcggc gattactgat tataaaggct tagcaacggt tgaaatgcct
    17161 taccctgtcg gcaagcacca aacctctcgt tatagtttgg ttgaacttag ccctaaaacc
    17221 gggcggaaac atcagcttcg ccgccacctg aaacacctgt tccacccgat tatgggagac
    17281 agcaaatatg gcgacttaca ccaaaaccgt gctttagttg aaaaatcagg cgtaagtcgt
    17341 ttaatgttac acgcccataa attgcaattt cagcacccga aaaatttgca aaaaatagag
    17401 ataattgcat cgcttgatga gcaatggcaa cgcctctttg cattttttga ctggaacttt
    17461 actcaatatt attagacaaa aaagaggatt gaatggataa ttcactttta tcattgacac
    17521 acgagcaaca acaagccgca gtagaagaaa ttcaaaaact gatggcacaa ggcatcagtg
    17581 ccggagaggc aattcaaatt attgctaatc aattacgtga caaatatcaa atattggaga
    17641 aatcaaacaa tgaataaatt atggacagtg cttgccctaa caataacttc ccactatagc
    17701 tttgctgccg ctgaaaaaat agtcactaaa gatttaccgg cagaaggaaa acctgcagtc
    17761 gtgctacagg tttttgatga aagtgaaaaa attgcaaaac ctattaaggg aaataagctc
    17821 tttattagca aaaaacaaac aaggctttgc tggcacagta ttaatcttcc tgtacaaaat
    17881 aaagttacta ttgcagaagc tttctatgcc cctgctgcaa tgaaattagc ttctcccggc
    17941 tctaaaatta attcttctgc agacaagaaa aatcatacta tcattactga aataaacctt
    18001 gcaaataatc aagtattaaa tcgttgctgg ggttttgata aaactgaccc tgtcggtaaa
    18061 tacaaaatgg aaattcaaat taacgatcac attttcaaag gtttagaatt tgaaattgta
    18121 aaataaccta aaagccacag agtaacaccc tgtggctttt tgctaaatca ttgtttttaa
    18181 attggttaaa ttgtgcagca aataatcttt actcttcaca aaggctctcg cctgttgcca
    18241 gttgctaaat tgttgctgag tgcattgatt aaaacgtacc agcacttcca aactttcatt
    18301 gccgacacaa ataaaatcag ctaataattg ggttaatttt tcactgtttt caccatccat
    18361 tgcagttgca attttctgct cccatttaac cgcttgtccg agcaaataac cccgctgggc
    18421 tttgcttaaa ttactcaacc acatcccatc cgcttttggc attgcctcaa ccaaagtaaa
    18481 taagtcgcct agatttcctt gcttgatttc aaactccaat tcacaaatcg gctcttcacc
    18541 aaaatgattt ttaatgatgc cctgatctaa cgctacctca atgtcagaca tccccacttg
    18601 caccaaccaa gttttacgag tgaaatcggt gctgaatatc gcttgcaagc tttctgcaat
    18661 ctgctctgaa ttttcaaacg gcaactggta tttttccact aatgtttgaa aatccggctg
    18721 gctattgggt aaagctaaat tatattccgg acgaatatgc aaaccgccta caatttcccc
    18781 ttgtgttttt aacgtgattt catattgttg attcacagaa cgcacccgca gccccatttt
    18841 ttgcgtggca aaaaattgct cgggcgtatc ataataggtg ttgcctaaca attccgtttg
    18901 atgagcaagc acagggaatg gcgaggtttg attcaagtag ttttccacta acgccacatt
    18961 ctgctgttcc aacattattt tcagttcgat ttctgcttgt ttttggtttt ccatttcaca
    19021 cgcccctgca acgttgtata atcaagcggt tattttatca ataaattttg caaaatgttt
    19081 tcaaaaattc accataaact gaataacttt gtccagcgtg gactcgacaa ccatttacgc
    19141 ctcgccgtta ccggcttaag ccgtagtggc aaaacggcat ttattaccag cttggttgat
    19201 cagcttttgc atatcaacaa aggcggtaat tcgcatttaa acctgtttgc gcctgcacgc
    19261 cacgggcaaa ttctatcggt aaaacgcgtt gagcaagggg atttaactat tccccgcttt
    19321 gaatatgata aaaaccgcca aagccttgaa aatcaaccac ctcaatggcc tgaatccacc
    19381 actggcatta gcgaaattcg ccttgcgatt cgctaccagc ggcaacattc tctgctacgt
    19441 catattaaag aaaccggcac gctttatttg gatattttcg attacccggg cgaatggctg
    19501 ttagatttac ccctgctctc cctttcctat aaagaatggt cgcaaacgca acaaaccata
    19561 cataaagatg agcgtgcaga gcttgccaca ccttggttac aagcggttaa aaaactcgat
    19621 ctttttgcaa aaaccgatga aaatttactg gcagaattca gccaacaata caccgattat
    19681 ttgctcgcct gcaaagctca aggaatgcaa tatattcagc cggggcgatt tgtgttgcca
    19741 actgaaaatg ccaaaggtgc accggtattc caattttttc cgttattaga tttaagcgaa
    19801 gctgagtggg aaaagttgga acaaagcgac agaaacagta ttttccatac cctcaaaaaa
    19861 cgctatgagc attaccagaa aaaaatcgtc aaaccgtttt atgaagatta cttctctcaa
    19921 tttgaccgcc aagtgatttt ggcagactgc ctcacaccgt taaattatgg ctataacgaa
    19981 tttatggaaa tgaaattagg gttacagcaa ctgtttaaac atttccatta tggcaatcgt
    20041 tcgctatttc accgtctgtt ttcgtccaac attgataaat tgctatttat cgcaacaaag
    20101 gcagatcaca ttactagcga ccaagtgccg aatttggaaa gcctaatgcg acaattagtg
    20161 caagaagggg gaagacacgc agaatttgat ggtatcgaaa ccggctattt agccatttcc
    20221 tcgattcaag caaccgatgc ggtgaaagtg actcagcaag ataaaatcat taaagcgata
    20281 agagggatcc gttccagcga tagaaaacaa gtgacactct accctggcag cgtgccaaat
    20341 cgcatacccg ataaaaatta ctggcaattt aaccgttttg aattcgacca attcgagccc
    20401 aagcaacttg attatagcca agcgattcca cacttcagaa tggattcggt gctacaattt
    20461 ttattggcgg atatgttt
//
LOCUS       DANLXB010000017        20107 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLXB010000017 DANLXB010000000
VERSION     DANLXB010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20107
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            7..480
                     /gene="nrdG"
                     /locus_tag="PXD41_000420"
     CDS             7..480
                     /gene="nrdG"
                     /locus_tag="PXD41_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL6287986.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            477..2258
                     /gene="nrdD"
                     /locus_tag="PXD41_000421"
     CDS             477..2258
                     /gene="nrdD"
                     /locus_tag="PXD41_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL6287987.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2315..2411
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2468..3286
                     /gene="thiM"
                     /locus_tag="PXD41_000422"
     CDS             2468..3286
                     /gene="thiM"
                     /locus_tag="PXD41_000422"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL6287988.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3279..4592
                     /locus_tag="PXD41_000423"
     CDS             3279..4592
                     /locus_tag="PXD41_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6287989.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4728..4824
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4892..6421
                     /gene="thiE"
                     /locus_tag="PXD41_000424"
     CDS             4892..6421
                     /gene="thiE"
                     /locus_tag="PXD41_000424"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL6287990.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6414..7586
                     /gene="cytX"
                     /locus_tag="PXD41_000425"
     CDS             6414..7586
                     /gene="cytX"
                     /locus_tag="PXD41_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL6287991.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7625..7834
                     /locus_tag="PXD41_000426"
     CDS             7625..7834
                     /locus_tag="PXD41_000426"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6287992.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7842..8018
                     /locus_tag="PXD41_000427"
     CDS             7842..8018
                     /locus_tag="PXD41_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6287993.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8059..9915)
                     /gene="sppA"
                     /locus_tag="PXD41_000428"
     CDS             complement(8059..9915)
                     /gene="sppA"
                     /locus_tag="PXD41_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL6287994.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10018..10581
                     /locus_tag="PXD41_000429"
     CDS             10018..10581
                     /locus_tag="PXD41_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6287995.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10652..12976)
                     /locus_tag="PXD41_000430"
     CDS             complement(10652..12976)
                     /locus_tag="PXD41_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL6287996.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(12976..13530)
                     /gene="pilW"
                     /locus_tag="PXD41_000431"
     CDS             complement(12976..13530)
                     /gene="pilW"
                     /locus_tag="PXD41_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL6287997.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
     gene            13750..14001
                     /locus_tag="PXD41_000432"
     CDS             13750..14001
                     /locus_tag="PXD41_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6287998.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            13985..14332
                     /locus_tag="PXD41_000433"
     CDS             13985..14332
                     /locus_tag="PXD41_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6287999.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(14373..15533)
                     /gene="trmG/rlmN"
                     /locus_tag="PXD41_000434"
     CDS             complement(14373..15533)
                     /gene="trmG/rlmN"
                     /locus_tag="PXD41_000434"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL6288000.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            15793..16689
                     /locus_tag="PXD41_000435"
     CDS             15793..16689
                     /locus_tag="PXD41_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL6288001.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            16702..17445
                     /locus_tag="PXD41_000436"
     CDS             16702..17445
                     /locus_tag="PXD41_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL6288002.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(17502..18311)
                     /locus_tag="PXD41_000437"
     CDS             complement(17502..18311)
                     /locus_tag="PXD41_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6288003.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(18304..19164)
                     /locus_tag="PXD41_000438"
     CDS             complement(18304..19164)
                     /locus_tag="PXD41_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6288004.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(19238..20023)
                     /locus_tag="PXD41_000439"
     CDS             complement(19238..20023)
                     /locus_tag="PXD41_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL6288005.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
BASE COUNT         5767 a         4503 c         4228 g         5609 t
ORIGIN      
        1 ttagtaatgg aaaatctcag attcagctcg gaacaaattg tttggcaaga agtgccgaat
       61 gagacctcac ttgcttttct gattacaggc tgcccgcttg gctgtaaagg ttgccatagt
      121 gcggatagct ggaaagcctg tcttgggaaa gagcttagca gtgaatatct ctctgaacgc
      181 ctaaaacgct accaaggctt aattagctgc gtattgttta tgggcggaga atgggaagca
      241 gaaaaattac tgccgctgtt gcaactggca aaaaaacagg ggctaaacac ctgtctttat
      301 agtggtttgg agcagcacga aatcgccgag actttattac acgagctaac ctacttaaaa
      361 accgggcgtt ggattgccga acgaggagga ttggaaagtt taaccaccaa ccaacgcttt
      421 actgatttac gcaataacca aaatcttaac catcttttta ttcgaggagc ttcaatatga
      481 ttcgcttaca accgacacaa ttagacggaa aactacattt cattaaccaa tatattcaag
      541 ccaaaaatgc cgcagacggt tcaaaaatgg acgccaacgc taacgtcacg caaaaaaaca
      601 tagcgacaat ggaacaggag ctaatgaaag atttttttgt gcaaatcaac cgagcaaaag
      661 tgagtgaaaa aattgcaaaa atttttggaa aagaaaccgc ttgtgaatat ttacgtcaaa
      721 tcgaagcaca cgaaatttac gtacacgatg aaaccagcct aaaaccctac tgcgtttcag
      781 tcactatgta ccctttcttg cgtgatggtt tgactaaact cggcggcgaa tccaaagccc
      841 cgaaacattt agcctcattc tgcggttctt ttatcaattt tgtctttgca gtcagttctc
      901 agtttgccgg tgcagtcgcc acggttgaat ttctgaccta ttttgactat tttgcccgca
      961 aagattacgg cgataattac ttacagactc atcgttcaga tattgaaaac cacctgcagc
     1021 aggttgtgta tagcatcaac caaccggcag ccgctcgtgg ttatcaaagc gtcttttgga
     1081 atatttcagt gtatgacaaa ttctattttg aagcgatgtt tagccgtttt gtttttcctg
     1141 attttgagaa accaaattgg gaaaccactt caaaattaca acttttcttt atgcaatggt
     1201 tcaataaaga gcgaagcaaa gcgattctca ctttccctgt tgtgaccgca gcaatgctta
     1261 ccgaaaaggg caaatgtaaa gatgacgagt ttgccaatca aatggcaaaa gagctatctc
     1321 aaggcaattc attctttatt tatcaatcag ataatccgga ttcccttgct tcttgctgcc
     1381 gcttgagaaa tgaaatcagc gatcatagct tctcctattc attaggggct ggaggtgttg
     1441 cgacaggttc aatcaatgta attactatta atatgaaccg tttggtgcaa gataaccgtg
     1501 atttaagcga agaagtcagc aagatccata aatatcaata cgcttaccgc aaactgatgg
     1561 aagagtattt agctgccggt atgttgccgg tttacgatgc cggttttatt tcactgcata
     1621 aacaattcct gactattggc attaacggaa tggcagaagc tgctgaatca caaggtttaa
     1681 ccgtaggtta caatccagac tatattgatt ttgtgcaatc tcggttaaaa attattttcc
     1741 aagctaacca agcagccggt gaaaagtatg gggtaaaatt taataccgaa tttgtgcctg
     1801 ctgaaaattt aggggtcaaa aacgccaaat gggacaaaga ggacggctat ttcgtaccac
     1861 gagattgcta caattcctat ttctatgtgg tagaagatga agaaattaat gctttggata
     1921 aattcttact gcacggcaga gagctgattg aatggctgga cggaggctcc gctctacact
     1981 tgaatttaga cgaagcctta acccaaaccg gatatcgctc cttgctggat accgccgcta
     2041 aaaccggctg caattatttt tgtattaacg ttaaaatcac gatttgcaac gaatgtagcc
     2101 acatcgacaa acgcacgttg cacagttgta gcaaatgtgg ctccgataat attgattacg
     2161 gcactcgggt aatcggctat ttaaaacgag tctccgcctt tagttccgcc cgccaaaaag
     2221 agcacagctt gcgtttctat caccgagaag cagcttaatt gaaaactgca gttgtagccc
     2281 tttacaaccg cttttttagt gattatatta aagcctcatt tagtcggggt gcttgcctaa
     2341 gggcaagctg agaaataccc gttgaacctg atgcagttag cactgacgta ggaaactaaa
     2401 ggcgtaaacc catctattcc ccgttggtgt tggtgcgttg tttttcaatc atattaagga
     2461 ataaacgatg accacatcac tcccctatca ctcgcattat ttgcaaaaaa ttcgacaaaa
     2521 tcgaccgctt gttcacaaca ttaccaacat tgttgccgct aatttttctg ccaacggctt
     2581 attggctctt ggtgcttctc ccattatggc agctgctatt gaggagatgg aatccgtgcc
     2641 ggcactcagt aacgccgtgg tgattaatat cggcacgctt atcggcaaag aagtagaagc
     2701 aatggagctt gctggcaaaa ccgccaaccg tttaggtatt ccgctcattc ttgaccctgt
     2761 cggcgttgga gcaacacctt tccgccgtca aacagttgaa accttagtcg accaaattca
     2821 cttcaccgcc attcgtggaa atgcggggga actagctacc ctcgccggtg tagaatggca
     2881 agccaaaggc gttgatgccg gcgaaggctc gcataatgtg gttgaaatcg cccaacagat
     2941 tgccaaacgt taccaaacct tagtcgcaat cagtggtgaa accgatgtgg taagctctgg
     3001 ctcacacaca gctttattgc acaacggcag cccgatgttc cccaaaatta ccgcttcagg
     3061 ctgtttatta agtgcggtat gcggggcatt cttagccgtt gccgacaaag agcactattt
     3121 caacgcactt attgaggctt gcgccgctta tgccgttgca ggcgaagtgg ctgctcaagc
     3181 actcaaacca actcaatacg ggcaatttgc cgtcaatctg ctggataccc ttggggcatt
     3241 aacgcctgaa accgttgagc aatatgtgag ggttgaatat gtctaaaact cactcaaacc
     3301 caactaaagt ggcggttgcc tcaatggtcg gcacggcgat tgaatatttt gataactaca
     3361 tctacacgat ggcagcagtg ctggtgttta atgtgcagtt ttttaatagc gatgatccgg
     3421 tttccaacca attaatgtcg ctttccgtac tagctcttgc ctttttcacc cgcccgatgg
     3481 ggtcgatttt attcgggcat ttcggcgata aatacggacg caaacaaact ctgattgcct
     3541 cgctcttatt aatgggctta tctaccgtag caatcgggct tttgcctaat tatgccgcca
     3601 ttggcatttg ggcaaccgtg ttactctgcc tctgtagaat cggacaaggt ttaggcttag
     3661 gcggcgaatg gggcggagct gctctcgttg ccactgaaca cgccccgaaa cacaagcggg
     3721 cattttttgg tatttttccg caaatgggcg ccccaatcgg cttgctgttg gcaaacggag
     3781 cgttctactt ggtgaattta atttacggtg aacaaacctt cttggattgg gcgtggcgaa
     3841 ttccgtttgt cgcttctatt gtgatgatcg ccattgggct ttatatccga attaagatca
     3901 gcgaaagccc gattttcctt aaagcggaac aacaaggtaa aaaccgccat accccgctta
     3961 aaactttgtt tagccaacac ctcaagcctt ttatgatcgg cgtgctgatt gccaccgccg
     4021 gctatgtgtt gttctacatt ttagttgctt tcaccccgat tttcgtcaaa agcccggtgg
     4081 cagtttctca agcaggacac gctacaggct taggtttacc ggtaaatctc tacacccaat
     4141 atttgctgat tacctccgtg attttcggca ttgcgatttt cttctccggc atttattcag
     4201 acaaaatcgg acgccgttta ctgctgttac ttgccacagg agcaaccgta gtttacggct
     4261 taacaatgcc gtttttcctc gaaaacggca caccgacttc gatctttatt ttcctcacca
     4321 ttggaatgat cttaatcggc ttaagcttcg gcccgatggc agtaattcta cccgaactct
     4381 tcccaacaga agtacgttac acaggggctt cgcttgccta caccgctgcc ggtattttag
     4441 gagctagcgt gttcactatt attgcggtca aaatcaatga aaatttcggc ttattcggtg
     4501 taggcggcta tttatcggtt gcctcattac tgagcttctg ggcattgtgg caagtccacg
     4561 aaaccaaaga tttggaatta gaggagatat aaaaaaccac tcacttaacg acggggcaag
     4621 ttaccacctt gccccaagat gagggaatgc aaatttccct ctaatagact tcacaacgga
     4681 tattttgcat ttttttataa aaaataaccg cttgtaagct atactaaaaa cgcttgtcgg
     4741 agtgccgtaa ggctgagatc gcaacagcga gatccgtgga acctgtaggt tagtacctgc
     4801 gtagggaaca agttttaccc aaattcagat tttgggatca ttaccacatc tctggcaagc
     4861 aaaaccctaa gcatattatg aggattttgc gatgtctaat tattcaaact ctccatacca
     4921 acctaacgtc atttggacgg ttgccggctc agattcctgt gccggtgccg gtctgcaaac
     4981 cgatttacat acctttcacg attttaacct agtgggttgt tcagtagtta cttctgtaac
     5041 ggctcaacat ccgcacggtg tgctgtgtgt aacgcctgtt gatgatcaca ccttccgcca
     5101 acagtttgaa gccttgctgg ttcaaggcta cccgaacgca atcaaaatcg gcttactctg
     5161 ctcgcaagca caagtagaga tcttgtgtga atatatccaa aaaatccgtg cagaaagctc
     5221 gcattattgt tatgtggttt acgaccctgt ggcagtggca agcagtgggc aggcgttatc
     5281 cgacagtatt ttattgcaga tagtgcaaca aaaattgtat ccgctggtgg atttaatcac
     5341 tccaaacggc actgaactcg ctttattaag cgacacagaa atccagacct ttggtgatgt
     5401 gaaaaccgct agccacaaac tgtttgcaca gggaatcaaa gccgtgttag ccaaaggtgg
     5461 acattttgaa tggctggggg aaacggtaag agattatctg ctgactgcaa atgaaattta
     5521 tgcctttagt cacgcccgac agcaaagtgt gaatacccat ggcacaggtt gcacctatgc
     5581 ttcagcggtt ggagcgatgt tggcaaccgg ctttgattta gctgatgccg tcactgttgc
     5641 caccgcttat ttgcaaaaag gcttatcgga aaaacaaggc agagggcaaa ctgctttaag
     5701 ttcactttgc cacaccggct accctgatga tatcgctttc ttcccacaaa ccgagctgat
     5761 ttctgcccct cttaaattgc cgaaagagcc ttttgctcca acggaatatc aacttgggct
     5821 ttaccctgtt gtagatagcg ttaaatggct tgaacgctta attcttgtag gggtaaaaac
     5881 cttgcaaatt agaatcaaaa atcgaccgct tgcagagatt gagcaagaaa ttgcccattc
     5941 ggtcgcactg gcgaaacagc acaatgtgcg tttgtttgta aatgattact ggcagttagc
     6001 catgaagtat caggcttacg gcgtgcattt agggcaggag gatttagcca ccgccgattt
     6061 aaatgcaatt cagcaatctg ggttacggct tggtgtttca acccactgct actttgaaat
     6121 aatgcgggca ttggcggtga aaccgtctta tatcgctttt ggccacgttt tccctactca
     6181 aaccaaagta atgccgtctc aaccacaagg cttaacaaat ttagccaaat atgttgctct
     6241 cgttgcaccg cttaacattc caactgtggc gattggtgga attaatgagc aaagcattga
     6301 aaatgtaatg cataccggtg tcggcagtgc cgcggtggta agtgccgtta cccaagcaaa
     6361 agattggcaa caagcggtca aaaacttagc aaaatttgca aatggaggcc gtaatgaata
     6421 gaactcttag tacgctaaac agtggtttga tttgggcggg agcgggcatt agtgccagtg
     6481 caatcgtggt tggcacttgg attgccccac ttggctggca acaaggcttg ctggcgatag
     6541 tgctagggca tttattaggc ggcattttgt tttttgctgc cggcttaatt ggggcgaaaa
     6601 ccggcaaaaa tgcgatgcaa acggtgcaaa tttcctttgg cagaggctcg gtgtttttct
     6661 cccttgccaa tgtgctacag cttgttggtt ggacagccat tatgatctat acaggggcag
     6721 agatcagtaa tgcccttagc cttgccttat gggaatattc ggctttctcg ctttgggcaa
     6781 tcgtgcttgg gttgctgatt gtgctatggt tatttaccgg ctctaatcag gtcggaaaat
     6841 tcaagttagt gacattgata gcgatgtttt tgctcacctt atggctaagc attaaggtat
     6901 tgaatgggca ggaaaatttt cctgtttcgg gtgaaatgcc gtttagcacc gcagtggaat
     6961 tagcaactat tatgcctctt tcgtggctac ctttggtatc agactatacc gctaaagcga
     7021 aaaagccttt tgccgcgacc ctttcggcga ccataggcta tttgatcacc agtgcgtgga
     7081 tgtatgcgtt aggtctgggt atggtgctat ttaccgggca aaccgaaatt gcccctatgt
     7141 tactaatgac aggaatgagc cttatcggca ttatggtgat gattctttcg actgtgacta
     7201 ccacgtttct tgatgcctat tccgccggtg tcagtgccgg caatatcacg gcaaaattca
     7261 aagaaacccc aaccgccatt ctagtcacaa tcatcggcac gctactggca atcagtttac
     7321 cggttaccca atatgaaaat ttcctgctgc tgataggctc ggtattcgcc ccgatgattg
     7381 ccgtgcaaat tgcggatttc tttgtgttaa aacgccacca agcacagcct aatgttgatt
     7441 gggttgctgc cggattatgg cttgtcggct tcgtgctata ccaccttctc tcttaccacc
     7501 aagtgcattt actactcggc ttaaccattc cagtgatgtt agtgattttt ctcagcacca
     7561 tttttgtgag gaggttcaca aaatagaaag ataagcggtt caattggagt gaaaatttgc
     7621 taaaattgag tcgcttgttt taaacaatga ctgggtagta acaccacaag ctcaacttgc
     7681 ctaccacacc attaacggta aagccgatga ggaacggtta aatcttttag ttgcccgtgc
     7741 cggcgtaaga gtagcaaaag gctttgcctt gaataatggt tggaatctgc aaccttatgc
     7801 ggaagtaaac ggcattgctg aaaaaggcca atagtacgaa agtgcaagta aaccaatatc
     7861 agtttggagt tgccgaaaac aagggcagag tgcaaggttc acttggcttg agtgcaggaa
     7921 acggtaatca ccgtttaggt ttagaggcat cagttgcttc aggtaagaaa ctgaaacaac
     7981 catttaatgt attagtaaat tatcgttatc aatggtaatt taagagggca ggtgaaaacc
     8041 tgcccttaaa ttcaataatt aatctatctt cccacaattt aaacagtaaa gatacatctg
     8101 tttcggatcg ttaaaacgtg aaagagtctc tagctgttgt tgcggttgct tcaacagcgg
     8161 taaatcaagc caatttgcca cgctaaattg taattgagct ttgaaatcac gggcaagcgt
     8221 gccaaataag ctgtcatctt gctccgcaaa ccattgtaag ccgaactgtt cgactttagg
     8281 ttggttttcc gcttcacgtt tttggttgat caattcagat aacgcattat atgccacatt
     8341 aaaattgccc aactcatcaa ccaatccgtg ttttaacgca tcagttccca gccacacttg
     8401 cccttgagcc actttatcta ccacctcttt tggcattttc ctgccacgag aaaccagctc
     8461 taaaaaacgg tcgtagccgt tttcaatccc aatttgcagc acttctgcct gctcttgcgg
     8521 taggcttttt aaaccggctt gttgtgctag ggcagaagtc gctatgccgt cttcgctcac
     8581 accgagattt ttagcggttt tttcaaaagt tactgctaaa ccgaaaatac cgatagagcc
     8641 ggtaagcgta ttcgggctag caataatttt atcgctggta gccgcaatcc aataaccgcc
     8701 cgatgctgcc attccgccca ttgaagcaac caccggtttg ccggcttgtt gaaaggcttc
     8761 cacttcttgg cgaatcagtt cagacgccac agcactgccg ccggggctgt taatgcgtag
     8821 aattaagcct tccacatttt tgtcatctcg agcttgttgc agtaatttta ccagcgtctc
     8881 gctgcccaca ttcatttcgt cactttcacc gccagcaatc gccccttcca cattcactac
     8941 cgcaattttc ggagcattca cttctgcaaa gcggtcgttt agttcagtca tataatctaa
     9001 aaattcaatc tggttataac tgccttcgct gtttttgcca aactgtgcaa tcagtttatc
     9061 ccgactttct tggctggaca ctaactgact aacccatttt tgatttaatg ccagttgagc
     9121 atcatctcct ttagcttgtt tatatttttc aatgtaattg gcaggcgata aatccagtgc
     9181 ttgcggttca atgttgcggt tttgagctag tgttgccaca gtttgttgcc aagtgccgtt
     9241 taaccagcct cgggcatttt gtttcgcctc ctcagacata tcatcacgca taaacggctc
     9301 aaccgccgat ttataagtac cgacacggaa aatatgcggt tcagcctcaa ttttatcgag
     9361 caaggttttg aaataagtgt tggaataatt taagcctttt aaatccaccg caccgacttt
     9421 attgagataa atttcatcag caaaggaagc aagataatat tgtttttgcg agtagtcttc
     9481 gcccactgca atcaccggct tgcccgattg tttgaagttg ttgatttcat tgccgataaa
     9541 atccaatgag ctgaaatcag cactttgtag cttttgcaga tctaacacca agccggtaat
     9601 tttcgggtca tttttagcgt ggctaatcgc ttgcaccaca tcaaaagtcg agattttaaa
     9661 cggctcggaa ctacctaatt ccgattgcac caagcggtag aaatcagtga attcttcccg
     9721 attatctgct aaataaccat ctaaatttaa acgtaacgcc ccttgattga acaccggctt
     9781 ttgcgtgctg ccagaagagc tgataaatgc gaccaccggc actaatagca aaataaacag
     9841 aataaaaaag agattaatga cacactctct aatacaacgg aagattcggt aaaatgcttt
     9901 taaaatcgtt aacatcggaa attcctaaaa ataaactcag tcggcacagt ataaagcaat
     9961 cgctaaatga agaaaatatg ctattcttga acgcaaaaaa ttaacaaagg aacgcttatg
    10021 caaatcttgg atttattaca ccatcgccgt tcaaataaaa aatttggcga taaagccccg
    10081 aatgcagaac aactggaaca aattctaaaa gccggcttgc gagtgccgga tcacgggcgg
    10141 ttaaagcctt atcgctttgt ggtgattgaa aaaagcggta tgccacagtt tggtgaatgc
    10201 ttaaagtctg cggtagcaga atttgatatg ggcgaggaac gcttaaaaaa agcggaaaaa
    10261 ttagctaatc aagctccaat gattatcggc gtggtagcaa cattagacga cagcatcgcc
    10321 aaagtgccaa gttgggaaca aatgattacc gcaggctgtg caacttatgc gattcagtta
    10381 gcggcaaatg cacagggctt tgatacggtt tggatcacca ataaatggat taacggctct
    10441 gctcttcgct ccgcttttgg ttgccaagaa tctgataaaa tcattgcctt aattatgctt
    10501 ggctcaccgg cagagggcga gcaaattgca ttagcccctg aaagtgaaag tttagagggg
    10561 tttgtacgtt atcttaagta agcaggttaa cagataaaag ttagtaataa gggcgaaaaa
    10621 tatttcgccc ttgcttttat ctgttttcgc cttacttctt ccagcctttt aacgcatcgg
    10681 caaaggcatt gttaccaaaa gcgttgcgat tgttgctttg caagcggtca tttttctgcg
    10741 tatttttgca aatttctgct gaatttcgac cgcttgttgg ctctttttta tcggttggtt
    10801 tgtcgtctaa acgcatcgta agggcaatac gtttgcgggc agcgtccacc tcaagcactt
    10861 tgactttcac cacatcacca gctttcacta ccgtgtgcgg atcttcaaca aaagagtttg
    10921 agagcattga aatatgcacc aagccatctt ggtgtacgcc aatatcgaca aaagccccaa
    10981 agtttgccac attggtcact gtgccctcca aaatcatacc ggctttgagg tcggtaattt
    11041 cttccacgcc gtccataaac acggcggttt taaactctcc acgagggtca cgccccggtt
    11101 tttctaactc tttgaaaata tcgttcaccg ttggtaaacc aaactgctca tccacaaaat
    11161 ctttggcgtt gagcgagtga attttgctgt tgttacccat taattctgca agtgttgagg
    11221 tagttgcctg taagattttt tctaccaccg ggtaagcttc cgggtgaacg cttgaggcat
    11281 caagggcatt tttcccaccg ataattcgca taaaaccggc acactgttca aaggctttcg
    11341 gccctaaacg aggcactttt ttcagctctg agcggctggt aaaacggccg ttttcgtcac
    11401 ggaatgccac gatattttgt gccaatgttt tggtcattcc cgccacccga gccagcaacg
    11461 gagcggaggc tgtattcaga tccacgccca ctgcgtttac acaatcttct actaccgcat
    11521 cgagtttacg ggcaagttgg gattggttta catcgtgttg atactgccca acaccaatcg
    11581 cttttggttc gattttcacc aactcggcaa gtggatcttg caaacggcgg gcaatcgaaa
    11641 ccgctccccg taatgaaacg tctaaatttg gaaactcgtt agccgcaaat tcagaggcag
    11701 aatagaccga tgccccagcc tcactcacca ccaccgtttg cggtttattc tctttgattt
    11761 ctttaatcac cgctttggca aaacgttcgg tttcacgaga ggccgtaccg ttaccaatcg
    11821 caatcagttc cacattgtgt tgtttgatta agctgaaaat cgcaagctgt gcctccgcct
    11881 ctcgcccagt gtgagggtaa attgtggcgg tatccagcaa tttaccggtg ttatccacca
    11941 ccgccacttt cacgccggta cgcaagcccg ggtctagccc cattgtattt ctcgcaccgg
    12001 caggggctgc cattaataat gccgagagat tgcgggcaaa cacatcaatc gcctcttctt
    12061 cagctttttc acacagggtt gccattaatt cggtttctaa atgcagagct gctttgattt
    12121 tccacgtcca agcaatcact tgctcacgcc atttatctgc tggttgatta ttaaaaatca
    12181 cgcccaaatg ctcacgaata atttcttcac aatggctgga ttttgtgcct tcttctgcag
    12241 tcggatcggc atttaatgaa agtgataaca ccccttcatt tcgcccacgg aacatcgcca
    12301 aagcacggtg ggaaggcacg ctgttaaacg gctcgctatg agcaaaataa tcacggaatt
    12361 tctcgccctc ttcctctttg ccgtcaatca ctttcgattc caacgtggcg taagcggtca
    12421 aatattggcg aagttttgca agtagctcag catcttcgct aaaacgctcc attaaaatat
    12481 atcttgcccc gtctaatgcg gccttggtat ccgcaacgcc tttttccgca tcaacaaagt
    12541 ttgccgctaa ggtttcagga tcttgtttcg gatcattcca taaactgtcc gccaatggct
    12601 ctaaccctgc ttcaatcgca atttgccctc tggtgcgacg ttttggttta tacggcaaat
    12661 agagatcttc cagctcggtc ttgctttcac tgcttagaat tttggctttt aattcatcgg
    12721 ttaatttgcc ttgttcttca atcgacttca aaatggtttg gcggcgttcg tccatttcac
    12781 gcaaataaat taagcgggtt tcaaaatggc gaagttgggt gtcgtctagc ccgccggtca
    12841 cttctttacg gtaacgagca ataaatggaa tggtattgcc ctcacctaat agcgtgatgg
    12901 ctgcaagaat ttggtgtgag ccaacgttga gttcgccggc aataatttgg ctgattttta
    12961 gatttaagtc agtcattagt tttccttcaa taaatttgct cgaggtttat ccaatttctc
    13021 aagctcggtc aatgtttcgg caattttttg cagattcggc tcttttttcg cacataacac
    13081 catattttct aagctatccg cttggtgata gtagggtgct ttgcttttga cagcctgctc
    13141 aaattgctga taagcctgtt gaaattgacc ctgtttacat aaaaaagtgc cgtaattatt
    13201 cagcacatca gggcggtttt gactcaattt cagtgccgtt tggtaggctt tttcggcatt
    13261 ttcagcatca cctgtttgtt ggtaataata ggcaagcacc gaataaggga ggtaatcttt
    13321 ttcatcgtga gccaaggctt tatcaatatt ctgcttagct tttgggaaat cattttgctc
    13381 cagataagct aaagccaaat taatacgggc ttttaccgct tccgagcggt taaattcgac
    13441 ttcagaggaa gaagggggaa gagaagaaca agccgctaat aaaaaaatca gaatacaagc
    13501 ggtcattttt ggaaaaaatt ttgcaaacat aacgttctcc tacaacaaag ggcttaattt
    13561 tactgttcca tcctcgctaa gactagcgat tttttgcgaa gaagaaaaat ttttcgtttt
    13621 catttttcga cgcagatcgc aaaaataata atggggtgtt gtgctagggt aaatggtagg
    13681 aatacactct ctatttaata taagaatttc attgaaaaaa cttataaaac ttataaaata
    13741 gaggcaaaaa tgaaaatagt ggtattccag cgtaaagcct taaagcaatt acgaaaaatc
    13801 ccaactggtg cagaaattcg ccgaaaatgt gatgatttag cttactttcc ctactgtgcc
    13861 aatattaagg cattaacaaa tcatcaatat gattatcgct ttcgggtcgg aaattaccgt
    13921 atttttttca atattgaagg cgaaacgatg aatattgtgt ctatcgaaga ggttaaaaaa
    13981 cgagatgaaa gaacttacta atattcaata tttaaataat gaagaaggaa aacctgcctt
    14041 tgccgtactt ccgatagcaa cacttgaatg gcttaagcag aaagcaaata ttaaaaccgc
    14101 aatagagacc ggtattccat ctgctgttgc tggaattgca ttagataata actactcagc
    14161 tctgcgtgct tggcgggaat atttaggttt aactcaagaa gaggtggcac aacgcttggg
    14221 gatttcgcaa tcagcttata gccaacacga aaatgcaaaa aatctacgaa aaacgacccg
    14281 cataaaaatt gcctatgcgt tgggtttaaa tgaagagcaa ttagatttct aataacaaaa
    14341 aggcaggaac ctctgccttt tcactattca gattaatggg ttttaaccgc aataccttgc
    14401 ccgaatttac gtttttcaag ggtgcgtttg gtgcggtcaa tcacatcgcc agcaagctgt
    14461 ccgcaagcgg catcaatatc atcacctcgt gttttacgca ctgttaccgt gaaaccgtac
    14521 tccatcaagg ttttttggaa acgatctacc cgagagttag agcttttacc ataaggagct
    14581 tctgggaacg ggttccacgg aatcaagtta attttacacg gcgtgttttt taatacttca
    14641 gcaagttggt gggcgtggtt tgtgctgtca ttgacatgat ctaacatcac atattcaatc
    14701 gtgaccttgc cgtggttggc gttagaaact tcacggtatt tattcaccga atccatcaac
    14761 attttgatgt tgtacttttt attaatcggc actaattcat cacgcagttc atcgttcgga
    14821 gcgtgaagtg aaattgccaa cgccacatca atttgctcac gcattttgtc taatgccggc
    14881 accacacccg aagtggaaag cgtgacacga cgtttagata agccgtaagc aaaatcatct
    14941 aacatgattt ccattgccgg aatcacgtta ttcatattca gcaatggttc acccattccc
    15001 atcatgacca cattggtaat cgggcgaaca ccggtcacgc caaaattgcc gataatttta
    15061 gaagcacgcc acacttgccc gataatttcc gccacgctta agttacggtt aaagccttgt
    15121 tgagcggttg agcagaaggt acaagccaag gcacagccta cttgtgaaga aacacacagg
    15181 gttgcacggt catcttcagg aatatatacc gtctcgattt gctgatcgcc cacttgcatt
    15241 gcccatttaa tcgtaccgtc tgcagaacgt tgttctaccg ccacttcagg ggctttaatt
    15301 tcggcaatac gctttaattt ttcacgcaat actttattga tattgctcat attatcgaaa
    15361 ttttcttcgc caaaatggta gatccatttc attagctggt cggcacggaa aggtttttcc
    15421 cccatttctg caaacagttc tcgcatttct tgacgattaa gatttaataa attgattttt
    15481 tcttttggtt gttcagcaga cccacagcct gcattggtaa tcagttctga cataaagttg
    15541 aaagcctcgt tattacacgg attacggcaa aaggttaggg caaatgccct tattttgcga
    15601 ttggatttta aagcgtgcaa ttttactggc tcttgaggga ttaggctagt aatttttaat
    15661 caaaagagtt gaattgcctg agtaaactta tcaagaataa ccttataaaa acaagactat
    15721 ttacatcatt cccaatgttc tatagaatag ctttcgataa ttctcattct caataacaaa
    15781 aggaggctaa aaatgaaact atcaacaatt aaaaaagcat tggtattaac ctttggttta
    15841 agtgcagcga tggcaatggc agagccgttt aaagtagtta ccacttttac cgtgattcaa
    15901 gatattgcac aaaatgtcgc cggcgataaa gccactgtgg aatccattac taaaccgggt
    15961 gctgaaattc acgattatca accaacacca aaagacattg taaaagctca aaaggcagac
    16021 ttagtgttat ggaacggtat gaaccttgag cgttggtttg aacgtttctt tgaaaatgta
    16081 aaaggtaaac cggcggttgt cgtcaccgaa ggcatcaccc caatgccgat taccgaaggt
    16141 gaatataaaa atctaccaaa tccgcacgct tggatgtcca ccgataacgc attaatttac
    16201 attgaaaata ttcgtgcggc tttagtaaaa tatgacccac aaaacgcaga cacctataat
    16261 gccaatgcaa aagcctatgc tgaaaaagta aaaggtattg ctgagccact ccgccaacgt
    16321 ttagctttta ttcctgagca gcaacgttgg ttagtaacca gtgaaggggc atttagctat
    16381 ttagcgaaag actacaactt aaaagaactt tatttatggg caatcaatgc ggaagagcaa
    16441 ggttcgccaa aacaagtgaa aaaagtgatt gatggtgtaa aagccaacaa aatccctgtt
    16501 gtgtttagcg aaagtaccgt ttccgacaaa ccggcaaaac aagtggcgaa agaaaccggt
    16561 gcattatacg gtggcgtaat ttatgtggat tcactttcag agaaagatgg tccggttcca
    16621 acctatttag atttgcttaa agtgactatc ggcaccattg tcgaagggtt cgaacgaagc
    16681 aaaaaataat aagatttagc aatgacaact gtttcagcct ccatttccgt cgaaaattta
    16741 tcggtccgtt ataataacgg acatatcgct ttgcaagatg tctcgtttca tctggaaaac
    16801 ggcacaattt gtgcattaat cggcgtgaat ggaggtggaa aatccactct gtttaaaagt
    16861 ttaatggggc tggttaagcc attaaccggc tctgttaagc tgagtcagct cccgattgct
    16921 aaagccctca aacaaaattt ggtttcctat gtgccacaaa gtgaagaagt ggactggcaa
    16981 tttccagttt cggtttacga tgtggtaatg atggggcgat acggctatat gaattttcta
    17041 cgccgcccaa gccaaaccga taagctcaaa gtagagcaag caatgcaacg ccttgatgtt
    17101 ttacatctca aagacaggca aatcggcgaa ctttccggcg ggcaaaaaaa acgggtattt
    17161 ttagcccgtg ccttagctca agaaagtaaa atcatcttac ttgatgagcc tttcaccggt
    17221 gtggatgtta aaaccgaaaa tgcgattgtt gagctactta aacagcttaa aaatgagggg
    17281 catttgattt tagtttccac ccacaacctt gccagcgtac caagcttttg cgatcaggtt
    17341 ttgatggtca atcgcacgct actggcaaaa ggtaaaacgg aagaaatctt taataatcaa
    17401 aatttagaac gggtgttcgg cggtttattg cattatcaaa agtagtgttt cagcaacaaa
    17461 tcacaaacaa atagggaggc aaatgcctcc ctatttttgt atcaatgaat cttagaatat
    17521 gcaaaactga ggaaaaaaat ggccgcttgc acgagaataa tcgtcggccc tgttgcggca
    17581 tcaatatggt agctaagcaa cgtgccgaat accgatgaaa atatcgcaac gcctaaggca
    17641 atcagtaaca tactatcaaa ccgcttagtc agcaggtaag cagtgatccc cggggtaatc
    17701 aacattgcca ccactaaaat cacgcccacc acttgcattg cactgataat agttaaagca
    17761 agcaaggaaa gtaaaccata atgcaataat ctaaccggta agcctgctac tttggcttga
    17821 ttaacatcaa agcaatagag caagaagtct ttgcgtttcg ccaccatcac cacaaaggta
    17881 aagaggctta tgagtaaagt ctgaagcaaa tcgcttttgg ttacgcctaa tagattacca
    17941 aataaaatat gggttaaatg ctcaccggta ttaaaggcgg taaacagcaa gatcccaaag
    18001 gcaaacatac ctgaaaacac aatccccatt accgtgtctt ctttcaagcg actattttct
    18061 tttaaatagc ccaccgataa ggcacagcct aatcctgaaa aaaacgcccc tattgagagt
    18121 ggtaacccgg caagtgagga aatcaccaca ccgggcagaa cagcgtgcga aattgcatcg
    18181 cccattaaag accagccttt cagcaccaga tagcaagata aaaccgcact cacgccagca
    18241 actaaaattg cggtaattaa cgcaatttgc ataaattcaa attgcaacgg ctctaaaatc
    18301 caattaagca ttttgaacct ccacacggtg caatttccgc ttttgagtaa tcaagccata
    18361 tttaggagca aagcagaatg cgaataagaa aattaaggtt tgtaagcaca caattaccgc
    18421 accggttgca ccgtctaaaa agtagcttaa atatgcccca atccctgatg tcagcgtgcc
    18481 gataagcatt gcgatcagca ctaatctagg gaaacggtcg gtaagtaaat aagcagttgc
    18541 tcccggcgtg acgaccatcg caataaccaa aattgcccca accgtttgca gagccactac
    18601 tacacaggca cttaataagg taaagaaaat cactttatag cgtaatggcg aaagcccgac
    18661 tgacaatgcg tggtgttcgt caaaaaagac gagtagcaaa tccttccaaa ataggattaa
    18721 acccagtaac gaaatcgcaa taatcagtac cacctgccac aagtcatcat cagcaatgcc
    18781 taaaatattt cccattacaa tcgaattaac atcaaccgat gttggattga gggaaacaat
    18841 aaacatacca agcgcaaaaa aagtcgtgaa aataaagccg ataaccgcat cttctttaat
    18901 tttcgtcagg ctttttaccc aaagaatcga taatgccgcc aaaatcccgg aaaaaaacgc
    18961 accaaaggcg tagggcaatt ttagtgcata agcgatggca acacctggca ctacagcgtg
    19021 tgataaggca tcaccaatca aagaccagcc ttttaacatc aaaaaggcgg aaagaaaagc
    19081 acaaactaac cccacgccca tactgacaaa aatcgctttt tgcatatagt tgtaggtaaa
    19141 aggctctaat aaaagatcaa gcataaaatc ctaacaagtt gttgataata gttcgcatat
    19201 actatcatat aaactccttt tcttgtatgg attaaactta aatatctact ttaaattgat
    19261 aaggatcagg atagtaataa cgaaaaccaa gctcttggca aattttgtct gcttttatca
    19321 gccttacaag cggttgattt tcttcagaaa aatgcaaatc cgctaaccca aaacgttttg
    19381 ccatttcact ataataatct ttacggcttg ggtgctgttc ggcacataaa tgaaaaatac
    19441 gctgcccgtt cggctgctcc aacagcaatg aaatggctgc aatacagtcc tctaaatgca
    19501 ctaaattgac cggctgccct gctccactca agttctgttt tcccgccaaa taaaaaaccg
    19561 ggtgccgttt tttgcccacc aagccagcta aacgcaaaat atcacaatga attggctggc
    19621 tcagcaacca attttccatt tttactaata ggttagcaga atcaaccact gcattttcat
    19681 caaaaacgcc cgatttcatt ggcaaaaccg aagtcgagct ggtgaaaacc agatgtttca
    19741 agcccttttc tattgcaagc gaaactaatg tttgaatacc gcaaccgtaa ttttcagggc
    19801 gaatttggct aaggggcaag gcaatcacta acgcatcagc agcaagtaat tgctcgattt
    19861 cgcttgtcac tgctaacgca tttaaatcta gaggataaca ttctatcgct aattctccga
    19921 ccgttcgctt agtacctgca acacgccagc ccttattttg taatgcttca gctaaaggta
    19981 gtccgagcca gccaagccct aaaatggtaa tttttttcat catttacgtt tctcaagatt
    20041 aaaattggaa tgaggggaaa ttcaggtaca aaaaaagcac ctcgtggtgc tatctatttt
    20101 atttcta
//
LOCUS       DANLXB010000018        19918 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLXB010000018 DANLXB010000000
VERSION     DANLXB010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19918
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(89..727)
                     /locus_tag="PXD41_000440"
     CDS             complement(89..727)
                     /locus_tag="PXD41_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL6288006.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(815..1762)
                     /locus_tag="PXD41_000441"
     CDS             complement(815..1762)
                     /locus_tag="PXD41_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL6288007.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(1779..2624)
                     /locus_tag="PXD41_000442"
     CDS             complement(1779..2624)
                     /locus_tag="PXD41_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6288008.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(2636..3907)
                     /locus_tag="PXD41_000443"
     CDS             complement(2636..3907)
                     /locus_tag="PXD41_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL6288009.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(3910..4389)
                     /locus_tag="PXD41_000444"
     CDS             complement(3910..4389)
                     /locus_tag="PXD41_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6288010.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(4450..5433)
                     /locus_tag="PXD41_000445"
     CDS             complement(4450..5433)
                     /locus_tag="PXD41_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6288011.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(5462..6487)
                     /locus_tag="PXD41_000446"
     CDS             complement(5462..6487)
                     /locus_tag="PXD41_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6288012.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            6651..7412
                     /locus_tag="PXD41_000447"
     CDS             6651..7412
                     /locus_tag="PXD41_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL6288013.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            7442..8626
                     /gene="uxuA"
                     /locus_tag="PXD41_000448"
     CDS             7442..8626
                     /gene="uxuA"
                     /locus_tag="PXD41_000448"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL6288014.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            8677..9546
                     /locus_tag="PXD41_000449"
     CDS             8677..9546
                     /locus_tag="PXD41_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6288015.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            9714..10028
                     /gene="rsfS"
                     /locus_tag="PXD41_000450"
     CDS             9714..10028
                     /gene="rsfS"
                     /locus_tag="PXD41_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL6288016.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            10105..10572
                     /gene="rlmH"
                     /locus_tag="PXD41_000451"
     CDS             10105..10572
                     /gene="rlmH"
                     /locus_tag="PXD41_000451"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL6288017.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            10596..12545
                     /gene="mrdA"
                     /locus_tag="PXD41_000452"
     CDS             10596..12545
                     /gene="mrdA"
                     /locus_tag="PXD41_000452"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL6288018.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            12538..13665
                     /gene="rodA"
                     /locus_tag="PXD41_000453"
     CDS             12538..13665
                     /gene="rodA"
                     /locus_tag="PXD41_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL6288019.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            13757..14416
                     /locus_tag="PXD41_000454"
     CDS             13757..14416
                     /locus_tag="PXD41_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL6288020.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            14430..15608
                     /locus_tag="PXD41_000455"
     CDS             14430..15608
                     /locus_tag="PXD41_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL6288021.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            15776..16075
                     /locus_tag="PXD41_000456"
     CDS             15776..16075
                     /locus_tag="PXD41_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL6288022.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            16137..16790
                     /gene="lipB"
                     /locus_tag="PXD41_000457"
     CDS             16137..16790
                     /gene="lipB"
                     /locus_tag="PXD41_000457"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL6288023.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            16805..17812
                     /gene="lipA"
                     /locus_tag="PXD41_000458"
     CDS             16805..17812
                     /gene="lipA"
                     /locus_tag="PXD41_000458"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL6288024.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            17999..19102
                     /locus_tag="PXD41_000459"
     CDS             17999..19102
                     /locus_tag="PXD41_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288025.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(19193..>19918)
                     /locus_tag="PXD41_000460"
     CDS             complement(19193..>19918)
                     /locus_tag="PXD41_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6288026.1"
                     /translation="LVVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTI
                     DFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEA
                     VDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINL
                     LEYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDS
                     IMSILRFYMMETARRLSARFANV"
BASE COUNT         5942 a         3836 c         4319 g         5821 t
ORIGIN      
        1 agtatgcaat atttgttatg ctttgtaaat aagaggaaag agatccattt tgggtagaaa
       61 atagctcatt gcttggaact ttaaatggtt atttcaccaa ttcaaccact tccttcgtca
      121 atttcccaat ctcctcccac ttctgttcct taatcaggga tttctccaca aaccaagagc
      181 cgccgcaggc gactacgttg ggaatggcga ggtagtcgtt gatgttttgt ggcgagatgc
      241 cgccggtcgg cataatctgt aagttgccgt aagggccgag cagggcttta atcattttca
      301 cgccgccact ggcttcggca gggaaaaatt taactgcttg tatgccaagt tcgagggcgg
      361 cttcaatcgc catcgggttg ttcacacccg gtgtaacagg caaacctaac acttggcaat
      421 acttaacgat agtcggatta aaacccggag tcacaatgca atccgcccca gcgtttttgg
      481 cagttaagac ttgctctttg gtcagcactg tgcctgctgc aatcaatact tccggatagt
      541 tggcttgcac taatttaatt gcctcttcag ctgcttccga gcggaaagtg atttccacca
      601 ccggcaaacc gttttcggaa agggttttcg ccagcggtaa aatatcttct gctttatcca
      661 aagcaatcac gggaacaact ttcagttgtc ttaatttttc aatgatttgt tcggtggtgt
      721 aacgcatttc tagcctcatt atgttgtatt gcaagcggtc gcttttgtaa aaaattttgc
      781 aaatttaacc gcttgtcgtt gtgctattgt tggtctaaat ggattgttca aactgcgatt
      841 tcaaatgagt agtggcggat ttggcaataa tcgccccttt gtgctgaatg acgataccgg
      901 caacggcatt tccttgttgg caacaggtaa cgacatcttt acccaataag taaccgttaa
      961 ggaagccggc attaaaggaa tcgccggcgg aagtggtatc gaccaccttc tctaccgcaa
     1021 cagttggcac aaaagtacgc tccccgtttt gcaacaccgt tgcccccaga gagccttgtt
     1081 tcaccacaat ggtctgaatg ccatattgag tgagacggtc aaaggtggct tgctcattca
     1141 catcgcccca aagcagttgc tcgtcatcaa aggtcacgag agctaaatcg actaattgca
     1201 acagctcggc atagtgagct tgggcagcag ccacactttc ccacagtttc ggccggtaat
     1261 tgctgtcaaa ggcgattttc accccttgtg ttttgagctc acgcaactgt gcaatcagca
     1321 aagtgcggtc gttttccggc aagatggcaa ggctgatacc gctcaagtaa accatatcta
     1381 cctcgtttag tgccgagagt gctttgggat agccggggtg ttgcaacaaa taacgggcgg
     1441 cagattgatt tcgccaatag aggaacgttc gctcgccctg tttatccaac tgaatcagat
     1501 acagccccgg ctggcggtgc tcgtcacgca acacaaaatc cgtgttgata ttatccacct
     1561 gccacgccgc taacattccc tgactgagct tatccgtgcc gagagcggaa atataacgca
     1621 cctcaatctg ttcaggcgaa ctcacccgag ccaaataggt agcggtgttg agcgaatccc
     1681 caccataggt ttggtgcatc tccccaaacg gctccccgtt taactcaatc atacattcac
     1741 cgagaatggc gagttttttc ataggaatac cttctaagtt acacgccgct ataagcagag
     1801 aatccgccat caacaggtaa tacaacgcca ttgataaagc tggaataatg gtgatccatt
     1861 aaaaatagga ttgcacctac caattcatcg gcttgtccga aacgtcccat aggggtattc
     1921 gtgaggattt tattagctct agctgttggc gtaccatcgg cgttaaatag tagagcttta
     1981 ttttgattac tcactaaaaa tcccggtgca atagcattac agcggatacc tacttttgag
     2041 aaataaactg ctaaccattg tgtaaagtta ctgattgcag attttgctcc agaataggca
     2101 gggattttag ttaatggagt aaaggcattc atactggata tattaatgat attagcgccc
     2161 tctttaccca acatatcttt tgcgaaaacc tgtgttggta atagtgtgcc taagtaattt
     2221 aaattaaata caaattcaat ccctgcttta tctaattcaa aaaaagattt tgtattttcc
     2281 ggtaagttaa tatcgtgaaa ttcattatct gtcgttgctt ttggattatt cccacctgca
     2341 ccattaatta aaatatcaca agtgccaaaa tcttttagaa tttcatctct tgcctgtttt
     2401 atgctttcta attcaagtac attagtttgg tacgctttcg caatatagcc ttcatcggca
     2461 atttcagaag caaaattctg tgctgcttct agattgatat cgagtagtgc aacttttgca
     2521 cctgtttttg caatttcttt tgcaaaataa gcacatagca caccacctgc tccggtaata
     2581 acaacaactt tatctttaaa attatgattt tgggcaatag acataataag aactcctaag
     2641 ataaccaatt cattggtacg ataataattt cagggaaaag tattaataag aacagtattg
     2701 cagcatagac tagcaagaat ggatagatac ctttggttaa tctagcaata ccaatttttg
     2761 ctataccaga accaacatat aataccgttc caacaggagg cgtaattaaa ccgatagata
     2821 ggttaattac catcataata ccaaagtaag caatatcgat gttatacgct cttagtaatg
     2881 gtaatagtac tggtacaaaa attaatactg ctgggattaa gtccattaca cagccgacta
     2941 ataataagaa aatcataatg acgaacatta gtacagtcgg gctatcggta atacctttga
     3001 taaactcaac taactccata ggtatttgag caacagtaac tgcaaatgca gatatcattg
     3061 ccgccgctgc aacaaacata accattgcag ttgttttgat agtgcctaag aaaacatctt
     3121 ggattttatc taaggttaac ccttttaaga taatgctgat tattgctgca taaattgctg
     3181 ctacaactcc cgcttctgtt ggtgtaaaga tgccgcctct taaacctacg ataataataa
     3241 ttggaagtag caatggtaag aatgctgatt taaatgcagc ccaacgttct ttacctgttt
     3301 ttttcggttc aacggtttgt tcttcgtttc ggtataagaa tttccaaact aaccataaac
     3361 ctaaaaccat taaaaagcct ggaaccattc ctcccataaa taatttggta attgatgcac
     3421 cggctgtaat accatagaca atcattggaa tgcttggtgg gataactaca gaaataatac
     3481 ctgctgcaca gattaagcct gttgaacgtg caacatcata ttttcttgca accatcatcg
     3541 gaataagaat tgcaccgaga gccgcggtat cagcaacagc ggagccggat aaacctgcga
     3601 aaattaagcc tgaaataatc actacatagc ccaatccgcc tttaatatgg ccgaccatgc
     3661 tcattgcaaa attgataata cgttcggaaa taccgccgtg tttcataatt tcaccggtca
     3721 gcataaaaaa cgggatagcc atcagcggaa aattatttgt acccattacg aaattctccg
     3781 tgattaattg ggcatcaaac atatccattt tccatagcat aaaactggca ctaagtagca
     3841 tagagagagc aacgggcact cctaaaaaga gaaagaggaa tagacttcct aaaaatagcc
     3901 ataacatatt tatttctcct ctttaatgaa agctagccga atatgtttcc ataaatttgt
     3961 gaatacaata gcgaaatagg agatagatga aataactgct gcaaaatata gaaacgcaga
     4021 tgaaatttca gttgctggca ttttttgtgt gtatgtcaat aacattaact ggtatgcacc
     4081 gtaagtaata aatgacagtg caactaagac taaaatatca gcaaagaaca gtaagtacat
     4141 ttgtactttt gccggtagtg cagaaacaac aatatcaacg gtgaggtgtc ccctttcctt
     4201 tgcaacgagg attattccta gaaagatcat atagacaaag cagattctgg cgaattcctc
     4261 agaccaagct attccggagt caaaaaaata tcgtaaaacc gcattaaaaa agactaggat
     4321 aatcattgta gatagagcaa ttatcgcaag gagtttgaga gttctatcta atgctgtaga
     4381 aatttgcata aatttctcct tcttcattta gatgggcgac ctcttttatc cggtcgcctc
     4441 gcttattgct tatttggctg cgtggatttt tgaaataaca tctttagccc aatcatattt
     4501 ctgatagaaa ttttgataaa gcgtttcgga tgcttttaac atatcagctt taaattgttc
     4561 actcggaaca atgacttctt tgccattttt gtggaagaaa tcttttacat cttgttccat
     4621 cttcatcgct aattcccact ctttttcttg gtagagtttt gctgcctcta agaagattgt
     4681 ctgatcttct ttagacattt tattccaagt tttcaaacta agttgtagta agccaggtga
     4741 gaaaatatga ttagattcaa taatatattt ttgcacctcg tataaaccag aatctttaat
     4801 taacatatat ggattttctt gcccatcaat gactttttgt tctagtgcgg taaatacttc
     4861 acttaaaggc atactttgag ggttaatatg cattgctttt gcccagtcca caaacaacga
     4921 atttagtgga acccttaatc gcaaaccttt aaatccatca aaattctcaa cttttttatt
     4981 ggaagagata acacggaagc cattcatacc atacgctagt aatttaatgc cgtacttctc
     5041 cattttttcc ccgatttctt gagcaatagg agattctaga actttcttag cttcggcatt
     5101 atctttaaat agatatggcc actcccatac gccaaaaatt ggatcaacat tttgtagtaa
     5161 taaacctgta atgccacctt caatcgtgcc attacgcaaa ccatttacaa tttgatcttc
     5221 tcctcccaac tggttatttg ggaaaatacg gatttcgtag cgtccttctg ttttttcttc
     5281 aatggttttt ttgaagtatt cctgcaatgc gatatttgat ggatgaacat ctgaattata
     5341 gtgaccaatc ttaatgatag tcttcgcaaa tgccgaaccg gtgaacatca ggctagaaat
     5401 taatagagct ttagtgaaag ttttgagttt catagttatt acctcgtagg tgagttagta
     5461 tttaaaatac agcgatgatt tttaagtaat catcaggatt agctgagagt tcttcgatat
     5521 agtgaggtat ttcatcaaat gtaattacct tactaatgat atcttttggt tcaattcttc
     5581 ttgatgccag aagctctaat gcttcttcaa atgccccctt gcttgttctt gccccataaa
     5641 tattaagttc tttgaaggtg attaaattag ttggtaatgg tgtttctgtt ttcggccatc
     5701 cggttaaagc aatacgtcca gcaaaagagg tgtatttaag cgtattttgt actgcgacat
     5761 ttgctcctga cgcttcaata accacctctg ccattcttcc attggtaatt gatttaatag
     5821 cttcaagatc gttttctttt gttggattaa ttgtgtgtgg aataccaata gattttgcgt
     5881 aatccaatcg cttatctaaa atgtcaatta aaatcggcgt cgctccataa gctttggcaa
     5941 ccaatgcagc cattagccca attgcccctg ctccaatgat agcaacatgt tcaccagctt
     6001 tgacttttgt tctatgaatt gcgtgtaagg aaatagttaa gggttctgct aacgctaatt
     6061 cgtgtattgg catatcaggt gttttgatta tcatatgggc tggatgtcta acaacctctt
     6121 gcattgcccc atcaatatgt acccccaata cttttagaga ttcgcaacaa tttgttctac
     6181 caatggagca gggatagcaa tgtccacaat agatgtaagg ttcaatgatg acacgatctc
     6241 ctacattaat attatttggc atacctttac cagactcaat tactgtgcca acgatttcat
     6301 gccctaaaat tctaggataa gtaacaagtg gattagtgcc tctaaatgct ccaatatcag
     6361 agccacatat ccccatacct tctactttga ttagcacatc attttcacct ttaacaggat
     6421 aagaaacggt ttgtatacca actttattag gttctacaag acatactgat ttgagtggtt
     6481 tttccatgat tttgtccttt tttgataaag ttaatcgaca ttttgtagtg tcaatggtat
     6541 tttatgcaca gatactaaca ccaaaaaaca agtttggcat tccaattttt gtgattttgt
     6601 gaacctgatc acaaaaatga aattttggaa ttccaatttc gtgaggattt atgcaaaata
     6661 gttccagaac ttacactaaa ataggaaaaa ttctcaaaga ggaaattgct caaggaaaat
     6721 acagagtagg agataagtta cctactgaga gagatatttc tgaaagattt gaagtgagta
     6781 gaactatcgt aagggaggcg atagtgatgc tagaagtaga aaagcttatt gaggtaaaaa
     6841 aaggatcggg cgtgtatgtc attagagtcc cggagctttt tccagaagat tttccagaag
     6901 agaaagataa tgagctaagg gatgttgggc catttgaact acttcaagca cgacaattat
     6961 tagaaagcag tattgctgag tttgcagcac agcaggctac caaacaagat atacaagtac
     7021 ttcgtaacat attagaaagt gagaagaaac ttttgttaga gaagatggat gactacagtg
     7081 cagataagga atttcatctt gcattagctc atatgacggg taacgatgtt ctgattcaat
     7141 tacaagaaca gctttggcga taccgcttta atagtgcgat gtgggctcag ctacactcca
     7201 gaattttaca gcatgatcat caccacttgt ggatagagga tcatgagcga attttaaatg
     7261 caatacagag aaaaaatcct gcattagctc gtaaagcaat gtggcaacat ctagaaaatg
     7321 ttaaaactaa attgcttgaa ttgtctgatg tagaggatcc taaatttgat ggatatctat
     7381 tcaatgtaaa ccccgttgta gtaggtatct aaaacctaaa ctacacaatg aggagtttac
     7441 tatggaacaa gcatggcgtt ggtatggacc aaacgatccg gtatctttag atgatgtaag
     7501 acaagcaggg gcaacgggga ttgtgacagc gttgcaccat attcccaacg ggcaggtgtg
     7561 gtcggttgag gaaattaata aacgtaaggc attattagct gaaaaagggc tggtttggtc
     7621 ggtggtagaa agtgtgcctg ttcacgaaga aatcaaaact caaacaggca actatcagca
     7681 atggattgat aactataagc aaaccttgcg taatttggca agctgtggga ttgatacggt
     7741 gtgctataac tttatgccgg tgctagattg gactcgtacc gatctggagt atgaaatgcc
     7801 tgatggctca aaagcattgc gttttgacca agtggcgttt gcggcgtttg agttatatat
     7861 cttaaaacgc ccgggagcgg aagccactta ctcatcagca gaacaagccg aagccaaagc
     7921 ctattttgag cagatgagtg acgctgatat tgcaaaatta accaaaaata tcattgccgg
     7981 tttgccgggg tctgaggaag gctatacgct cgaagaattc caagcacagc ttgaccgcta
     8041 tcaagggctc tcggctgaaa aattccgtac ccatttagcc tatttcttaa atgagattgt
     8101 gccggttgca caagaggtgg gcattcgtat ggcgattcac cctgacgatc cgcctcgccc
     8161 gattttaggc ttgccacgca ttgtttcaac catagaagat atgcaatggt ttgtggaaac
     8221 tcaaccgctt gcagccaatg gcttcacgtt ctgtaccggt tcatacggcg tattagccga
     8281 gaatgatttg gtcaaaatgg cagagcagtt tgcagatcgc atttattttg ctcacttacg
     8341 agctacccaa cgtgaagaaa atccacaaag tttccacgaa gcggatcatc ttgccggtga
     8401 tgtcgatatg tttggcgtgg tgaaagcatt acttaccgaa gagtatcgcc gcaaggcaaa
     8461 tggcgatcac cgattaattc caatgcgtcc ggatcacggc catcaaatgc tcgatgatct
     8521 gaagaaaaaa accaacccag gctattctgc gattggtcgt ttaagaggat tagcggagtt
     8581 ccgtggattg gagttggcac ttaagaaagt ctattttaac gattagcctt atttattata
     8641 atgccctcta ctgtagaggg cattttatag tttgatatgt tcaaaaaata tttcggcgaa
     8701 ataatccttt ttctcgttac ctttattgct gcagcggggt ggtttttctc taaacacgct
     8761 ttagttggat taccgcctat tggctttatg ggagggcgtt ttatattagc ctctttgatt
     8821 cttctgcctt tttcttaccg agagctgtat cgtttagata aggttcaagt taaatattcg
     8881 gtgattaccg gtcttactta cggaatttat actatttttt gggtattggg gctggctttt
     8941 agtacagtgt ttggtgaagg ggcttttttg gtgagccttg cgatgctgat tgctcctttg
     9001 ctctcttggt tgatattcaa acatacgcca ccgaagattt tttggttagc cttacccatt
     9061 gcattaagtg ggctttactt tctttctgcg gagaaaggca tctttcattt ttccttaggc
     9121 agtacgattt ttctggtgtc atcagtgttt ggggcgttat attttgtgtt aaataatcaa
     9181 tacgccaaac aagtctcatt gtttccatta attactatcc aattggcgat agtcggtgcg
     9241 gtctgtagct tgtattccta ttttatggaa agttggcatt tcccgattct caccgaagtg
     9301 tggctctggt ttgccgcaag tgtattgatt gcgacaaatt tacgtttttt aatgcaaaca
     9361 ctggggcaaa aatattgcca tattggtact tctgcactca ttatgttact tgagccggtt
     9421 tggacattgt tattgagcgt gatgttattg ggggaacaac ttagtgcgac aaaatggcta
     9481 ggttgcagct tgattttgat agcattgatt atttatcgac tccctattct acgactcaaa
     9541 aaataggtaa aacaaaagca aatatgccat agtattggaa gcagttaggc attttagagt
     9601 aagtaacaag cggtcatttt tgcaaaaaat cttgcaaaaa tgaccgcttt ctttctttta
     9661 tccgttcaat ctatgttaaa attctacatt tttataagat gagagagaga aacgtggaac
     9721 agaatttagt cgaattttta accaaaacct tagatgattt aaaggcacaa gatattttag
     9781 ccattgatgt gaaagggaaa tctagcatta ctgatacgat gattttagcc accggtacat
     9841 cgagccgtca cgttgcttca acggcagagc gtttaattac ggaagcaaaa caggctgggt
     9901 tcgaggtatt tggagatgaa ggtaaagcag ttgccgattg gatcgtggtc gattttggga
     9961 aggcaatggt tcacttgttg caatccgata gccgtgagat gtaccaatta gagaaacttt
    10021 gggcgtagca gttcaataag gaacgacaag cggtgatttt tgcaacattt tttgcaaatt
    10081 aaaccgcttg taagtgaaag agagatgaaa attcaattaa ttgcggttgg cactaaaatg
    10141 ccggcgtggg taacgacagg gtttgaagag tatcaacgcc gttttccgaa agagatgccg
    10201 tttgagttgg tggaaattcc ggcaggaaaa cggggcaaga atgctgatac taaacgcatt
    10261 cttgagcttg aaggcaaagc aatgttggcg gcagcgggca aggcaaaaat cgtgactttg
    10321 gatattccgg gcaaagcgtg gacaaccgag cagttagcca ctcagttaga gggctggaaa
    10381 aacgatgggc gagatgtagc gttattgatt ggcggcccgg aaggattatc accggaatgc
    10441 aaagccgctg ccgagcagag ttggtcgttg tcgcctttaa ccttacctca cccactggtg
    10501 cgggtggtgg tggcggaaag tttgtatcgg gcgtggtcgg ttaccattaa tcacccttat
    10561 catcgagagt agtgagtcat tttagatagt gttatatgtt tggtaaatta gcaaaattca
    10621 cagcttcaaa ccagcgagaa aaggtgcgag acgggcaggc agaaagcaat ctgtatgccc
    10681 gccgtgcctt agttgcgttt ctgggggtgt tggcgttaag tggtgtttta ttaaccaact
    10741 tgtatcactt gcaagtggtg aattatgagg actaccaaac ccgttcaaac ggtaaccgca
    10801 ttaaattgtt gcctgtgcca ccggctcgag gcttaattta tgaccgtaac ggtaaagtat
    10861 tggcggaaaa tttaacctat ttcgggctgt ttattgtgcc tgaaaagacg gaaaacattg
    10921 agcagacttt aaccgagttg aaggatattg ttgggctgac ggacgaagat atcgagaatt
    10981 atcataaaga gaaaaaacgc agttctcgct ataccccaat tatgctcaaa ggcaatttga
    11041 atgaggctca gatggctcgt tttgcggtga accaataccg ttttccaagt ttagatgtgc
    11101 aggcgtatta taagcggaat tatccttacg gcgagctttt aacccatatt atcggttatg
    11161 tggcgaaaat taacgaaaac gataagaaaa agctgcaaga agccgggaaa ttcggcaatt
    11221 atgccggttc gcacgatatg gggaaattgg ggattgaaaa attctatgaa gatcagctcc
    11281 acggtgtcac cggttttgaa gaggtagaaa ttaataaccg agggaaagta atccgtaaat
    11341 tgcgtgacca agcaggggtt gccggtagca gtattcgctt gagtattgat gtggaattac
    11401 agcaatatgt gatgtcgtta attgctaagc ataaaggggc ggtggtggtg cttgaccctc
    11461 gtgatagcag tattttagcg atggtctcaa acccaagtta tgacaataat ttatttgtgg
    11521 gcggtatttc agggcaggat tataaagcat tattggacga tccaacccga ccactttata
    11581 gccgtactac acaaggcact tatccaccgg cttcaactat taagccattt atggcggtgg
    11641 caggtttgga agagggaatg attacccctt ctaccaccat ttcagacccc ggctattgga
    11701 ttttgcccgg cactacacaa cgttatcgag attggaaacg tagcggacac ggtgcaacta
    11761 atgtgaataa agcaattacc gaatcgtctg ataccttttt ctatcaatta gcctataaaa
    11821 tggggattga taaaatgtcg gattggatga aaaaattcgg tttcggagtg aaaaccggta
    11881 tcgatatttt tgaggaatcc gcaggggtaa tgccaacccg tgaatggaaa caaaaacgct
    11941 ataaaaaacc ttgggtgcag ggcgatacta ttccggttgg gattgggcag ggctactgga
    12001 tttcgacccc gttacagttg gcgaaagcca cggcggtgtt aatcaacaac gggcgggtga
    12061 atacaccgca tttaatgctt gaagtgcaaa gcagtaattc ggttacgccg tatcaagacc
    12121 cattgttgta tgaagatatt aaaggcgtgc cggatgtcta ttggaattta gcaaaacagg
    12181 gaatgtataa cgtaaaccac gccgcaaacg gtacggcacg aaaagtgttt gccggtgcat
    12241 tttatcattc agcagggaaa accggtacgg ctcaggtgtt taacttaaac ggtaaaaatt
    12301 acgataaaaa tgcgattaaa aaagagttgc acgaccacgc ttggtttatc ggctatgctc
    12361 cttatgaaca acctaaaata gtggtggcat taattttaga aaatgcaggc ggtggtggta
    12421 gtgccgcggc tcctgttgct cgtcagatta tggattatgc tttgagaaaa ggcattggtg
    12481 aacagccgga ttcgcaaaat tctgagcaaa ataaaccgct tgtcacagag gaacatcatg
    12541 aatagtggct ttaaaaaact tttctggaaa attttttcac tcgatctcct tttattatca
    12601 ggattattag ctattaccgg ttatggttta ttagtactat atagcgcaag cggtgcaaat
    12661 gagcggatgt ttaccagtag actgattcaa gtttcgctag ggcttgggct aatgttgata
    12721 atggcaatgg tacctcctcg cttttatcaa aaagtttcgc cttatctgta tattttctgt
    12781 ctgatattat tgattttggt ggatttggtc ggcgaaacca gtaaaggagc gcaacgttgg
    12841 ttgaatttag gatttgttcg ctttcagcct tctgagattg ccaagctcgc tgtgccactg
    12901 atggtagcca cttatttagg taagcggccg cttcctccga gttttaaaga tacttttatc
    12961 gccttagcca ttattattgt gccaacctta ttggtggcaa ttcagcccga tttgggaaca
    13021 tctattttag tgtgttctgc cggtattttt gttttatttt tggcagggct aagttggaaa
    13081 ttaattggcg caggtgtggt gtttttagcc ggttttatcc cgataatgtg gtttttctta
    13141 atgcacgatt atcaaaaaac ccgggtgatg accttaattg atcctaataa agacccgttg
    13201 ggtgccggct atcatattat tcaatccaaa attgcgatag gctctggtgg cattaatgga
    13261 aaaggctgga tggaaggaac gcaatcccag cttgaatttt tacctgaacc gcataccgat
    13321 tttatttttg cagtgttaag cgaagagcat ggtatgatag gtgtgctgat tttattagcg
    13381 atttatttgt ttattattgc ccgaggttta gtgattggca caaaatcgga ttctgctttc
    13441 gggcgtatat tatcaggtgg tacagccctt ctattttttg tttacgtttt tgtaaatatt
    13501 ggtatggtga gtggtatttt acccgtagtc ggtgtaccat taccgctttt cagttacggc
    13561 ggaacctcct atgtgacgct gatggcggca tttggtttga tgatgtcaac ctatgttcac
    13621 cgtaagcgtg taggtagtaa taatccttat gataaactga aataaattaa acttttgctt
    13681 ttttgcggta tcaaaaagca gtgaaacgat catcgttaca aacaataacg acatccacat
    13741 agaggaaaaa acttatatga gattaggtaa aattgtaacc ctgttgttag ctggatttct
    13801 gacatttagt tcattaaatt ctttggctgc gacaaagaat acaaaagcta aatcgagtat
    13861 tttagccaag aagcaagcaa cttctaaagc aataaaaaaa gtaggtattt ctaaagttaa
    13921 gaaaaaagaa gtagtggcta aagctacaaa aaagaaaaca atttctactg ttacaactaa
    13981 gccgattaaa tctacaaaaa agctggctcg caaggttgtc aagaaaacgg taaccgctaa
    14041 gaaaaaattg gtaaaaaagc agcataagcc actggtcaaa aaacatttcc agactggtgt
    14101 tgccagctat tatgcaaatt actttaatgg tcgccgaacc gctaatgggg agactttcaa
    14161 taacgcaaaa atgacggctg cacatcgaac tttaccattt ggtactttaa ttgaagtgac
    14221 gaatttacga aatggtcgtt ctgtggtggt gcgtgtaaat gatcgcggac cttatgctca
    14281 cgcacgggtc ttggatttat catcagccgc agcgaaaaaa atcggtatgc accattcggg
    14341 gacggcaaga gtgaaaattg cgattgttga taagtcaaaa ttgggatcga ctaatcagtt
    14401 ttatgtaatg aattaattta agagggaata tgaaaaaaac attagtgaaa gcgatgagcg
    14461 tggtaggttt tgcggtttca agcattgcct atgcggattt aaacactaac ttcaatttat
    14521 cggcacccca gatcaacgca caaacctata ttttgatgga ttacaactcc ggtgaagttt
    14581 tagtgagcct aaatccggat caacgtcaat atcctgcatc attgaccaaa atgatgacta
    14641 gctacgtagt tggtgaagcc ctaaaatcgg gaaaagtgca aaacagtgat atggtgatag
    14701 tcaccgaaaa ttcgtgggcg caaaaattcc ccggctcttc attaatgttt ttagatttaa
    14761 acagcaaagt ttcagtaggt gagttgatga aagggctgat tatcgtctcg ggtaatgatg
    14821 cctctgtggc gcttgctgaa catgtttcag gctcacaagc ggcgttcatt aatgaaatga
    14881 acaaatatgc ccaacagttt ggcttaaaga atactcactt taccactgtt cacggtttag
    14941 atgaccctga gcaatattct tctgctcgtg atatggcgat tattggttcg catattattc
    15001 gtgatcagcc ggaagagtat aaaatttatg cggaaaaaga gttccaatat aacatcaaaa
    15061 aaccacaacc aaaccgcaac ggattattgt gggataaaac cattcaagtt gatggtatga
    15121 aaacagggca tactgataaa gccggctata acttagtcgc atcagcaatt aacccgaata
    15181 cacgtttaat ttctgtagtg atgggcgtgc caacttataa agggcgtgaa gtggaaagta
    15241 agaaattact gcaatggggc tttgcgaact ttgaaaccat taaatctatt ccggcagctc
    15301 aatcggtggc agagcaaagt gtctattacg gtgaagtcaa taaagtacaa ttaggctcgg
    15361 tgcaagatag ctttgtgact atcccgaaag gtcgctcggc agatttaaaa gcccgttatg
    15421 agttagagaa gaaaaacctc gaagctcctt tagcaaaagg gcaggtagtg ggtaaaatga
    15481 tctaccaact tgacggcaaa gatgttgcaa gcactaactt acaagtctta caagatgtac
    15541 cggaagccgg tattttcggc aaagcgtggg attggattgc ccttactgtg aagagcttgt
    15601 tcgattaatc ttgttatttg cctttttatc cccatctagg gagcaatgca agcggtgtga
    15661 ttttgcaaaa aatttgcaaa atttcaccgc ttaccgtttt agatatgaat gtataaaaag
    15721 tgtagtggcg aaaaattttt cgcccctcga agaaagaata gaagaaggat caaaaatgtc
    15781 tcaacccaaa gcgataaact tacaagattt acctcaagcc aaattaaaag atctgctaga
    15841 gtttccgtgc catttcacgt tcaaagtggt gggagcaaac cgagaagatt tggttgatga
    15901 tgtggtagtg gtcacgcaaa aatatgccaa aggcgattac aatccacgtc agcaaaaaag
    15961 ctcaaaaggt acctataatt ccgtttcgat tgatattgtg gcggaaaata ttgagcaagt
    16021 agaaactctc tacacggaac ttgccaaaat taatggcgta agaatggtat tataatgcga
    16081 ggggcgaatg acattcgccc tcaatttttc aataaagcga tgttggaaaa tagaaaatga
    16141 aattaataat tcgccaacta ggcattcagc cttatgaaga aatttggcac caaatgcaat
    16201 ctttcacaga tagccgtgat gggaataccg atgatgagat ctggctggtt cagcacccgg
    16261 ctgtgtttac gcaaggatcg gcaggcaaac cggagcattt gttaaatcca accaatattc
    16321 cggtggtgca aagcgaccgt ggcggtcaaa ttacttacca cggcgagggg cagcaaatta
    16381 tgtatgtgct gattgatatc aaacggctga aatccttggg taaagaagtg tcggttcgag
    16441 atttagtgac tgccctggag caaaccgtgg tacaaacgtt ggcagaatat ggcatagaaa
    16501 gttatccaaa agccgatgca cccggggtgt atgtggacgg caagaaaatc tgctcacttg
    16561 gtttacgaat tcgaaaaggt tgctctttcc acggtttggc attaaatatc aatatggact
    16621 taacgccttt tcaaaacatc aatccgtgcg gttatgcagg gctggaaatg tgccaattaa
    16681 gtgaactggt tcatcgccct gatttgcgtt gcgaagaggt tgctccaaaa ttagtggctc
    16741 atttcagcac aattttaggc tataataacc aacaaattat taacaattag gataaaacac
    16801 agtaatggct acatcgacag ctcaaacgac ggcaactgct acagtgaaaa aaatgagccc
    16861 tttcaaaatg gaaaaagggg tgaaatatcg tgatgccgcc aaaacctctg tgattcaggt
    16921 gcgtaatatc gacccggatc aagaactctt aaaaaaaccg gagtggatga aaatcaaact
    16981 gccggcaaat tcggcaaaaa ttgatagcat taaaaacggt atgcgtcgcc acggcttgca
    17041 ctcggtgtgc gaggaagcct cttgcccgaa tttacacgaa tgttttaacc acggtactgc
    17101 aacctttatg attatggggg caatctgtac ccgtcgttgc ccgttctgtg atgtggcaca
    17161 cggcaaaccg cttccgcttg acccggacga acctcgcaaa gtggcagaaa cggtgcaaga
    17221 tatgaaactc aaatatgtgg tgattacctc agtggatcgt gatgatttgc ccgaccgtgg
    17281 tgcggctcat ttctctgcga ccgtgcgtga aatcaaagcc ttaaatccgc attgtaaggt
    17341 tgaaatttta gtgcctgatt tccgtggacg tgtggagcaa gcggtggcaa ttctcaaaga
    17401 aaatccacct gatgtcttta accacaacct agaaaatgtg ccacgtctct atcgtgaagt
    17461 tcgtccggga gcggattaca aatggtcgtt ggaattattg aaaatcttca agcaagagtt
    17521 cccgcatatt ccgaccaaat ccggcttaat ggtaggctta ggtgaaacca acgaagaaat
    17581 cttggaagta atgcaagatt tacgagacca cggcgtgacg atgctcacca tcgggcaata
    17641 cttacaacca agccgccacc acttaaaagt ggaacgttat gtgccaccgg cagagtttga
    17701 tatgttccgt gaggaagctg aaaaaatggg ctttgaacac gcagcctgcg gaccgttcgt
    17761 gcgttcttct taccacgcgg atttacaagc gaaaggcgaa ttggtgaaat aaaatcgata
    17821 agggcgaata ttatttgccc tttgtttttg tggtttgcaa agttttagca aaattaaacc
    17881 gcttgtaatc tcttctaatt tactcttcta tagataattt cgttgttgcg aattattttc
    17941 attgactatt tgttatagaa agttacaatt caactttcca tttctttttg gagttccaat
    18001 gaaaaaatta ctattaaaca gcgtatttgc tgccacattg cttgcttttg gtgcaactgc
    18061 caatgccgaa attaaaacca tcactgatgt attagggcgt gaggtcaaag ttgatgtgcc
    18121 tgctaaacgt gttgcactga ctttctatta ccctgactat attgcggtaa ccggtgttga
    18181 aaatttcgat aaggtagtag ggatttcacg agagttttgg gaaaagttca acccaggcag
    18241 ttgggcatta tttgcagaaa aaatgccaaa tctaaaaaac attgccgatc ttggctatgt
    18301 gaatagtggt actttttcaa cagaaaaaac catcgcatta aaaccagatg tgttagtgct
    18361 acctgaaatt caatatcaag cgttagccag tgaaatttca cgcattgagc aagctggcat
    18421 tcctgttgta gtagatttca acaagcaaac tattgaaaac catacaaaaa gcgtgagagt
    18481 tttcggtcag cttacaggca ctgaagagag agcggagaaa attgccaaag agtatgaaga
    18541 gggcattgct gatattcaga gctgtattga taatgcaaaa gtaagtaagc cgaaaatcta
    18601 tgctgaattt ggtaataaag gcccgaaaga gcatagtttt acctttggta aaaatatgtg
    18661 gggagcgatt gccgaaacgg tgcgaggcga taacattagt gccccgtttg tagaaaactg
    18721 ggggcagatt aaccctgagc aggtgttagt ttctaaacct gatgtgatta tgatttcagg
    18781 tacggaacta ggcaacgaca ctaaccctga gattatgtcg atggggatta atattgaaga
    18841 agccgatgct caaaaacgct taaaaggctt tattgagcgt acaggttgga aagagttacc
    18901 tgcggtaaaa tcagggcgtg tttatggttt atatcataca gcttctcgct caatttcaga
    18961 tttagcgagt gctcaattta tggcaaaagc actttatcct gaattgttta aagatatcga
    19021 tcctgaaaaa acgtatttgg atttccacaa caactactta ccaattacgc caaaaggcac
    19081 attctttatg caactgaaat aaaaataaca agcggtcatt ttgcagattt attttgcaaa
    19141 atgaccgctt gtattcgctt ttactatttg cggttcaaac agcaatcaat atttaaacat
    19201 ttgcgaagcg ggcggataat cggcgagccg tttccatcat ataaaatctc aatattgaca
    19261 ttatagagtc tctgaataat atcgcattcc aacatatcac aagctctgcc ttgtgcttga
    19321 atttcccctc gcttaatagc atcacactat ccgaaaattg agccgcaagg cttaaatcgt
    19381 gcagcaccat aattgtaatt aggttattcg ctcgagtgta ggcattcaca tattcaagta
    19441 agttgatttg atgatacata tccaacgcac tgacaggctc atctagcagc agaatgtgtg
    19501 gtttacgtag caatacttgt gcgaacatta ccatttgccg ttgcccgcca cttagccgca
    19561 taatatcttg atgagctaga tgtgaaatac cgagtttatc cataatatca acggcttcat
    19621 tgagtaattc atcgctaata tacatattca ggctatcaag ttgccctaat aaaataacct
    19681 ctaaggcact gagtgaggcc tctacctgtg tgtcttgtgg catatagcca atttctttac
    19741 gccaactatg caagtggctt gaggttaatt tattaccgtc aaaatcaatt gtgccttgat
    19801 gagcaatttc cccaaataga gttttaagga gagaagattt acccgcacca tttgggccaa
    19861 gtaaagtata gatcttgcct tgttcaaaat gtagattgat tttatcagcc accactaa
//
LOCUS       DANLXB010000019        19883 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLXB010000019 DANLXB010000000
VERSION     DANLXB010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19883
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..512
                     /locus_tag="PXD41_000461"
     CDS             <1..512
                     /locus_tag="PXD41_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL6288027.1"
                     /translation="DKTQICQKFQKEQISQADLSDKQFRFLQYQFACQFHSLFKDKKP
                     TKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIVLAKNAINENLPQE
                     FYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAELEARYSAWRYLPYS
                     EHLMGAVDD"
     gene            505..798
                     /locus_tag="PXD41_000462"
     CDS             505..798
                     /locus_tag="PXD41_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL6288028.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            847..4137
                     /gene="recC"
                     /locus_tag="PXD41_000463"
     CDS             847..4137
                     /gene="recC"
                     /locus_tag="PXD41_000463"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL6288029.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4273..7218
                     /gene="ptrA"
                     /locus_tag="PXD41_000464"
     CDS             4273..7218
                     /gene="ptrA"
                     /locus_tag="PXD41_000464"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL6288030.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7267..8913)
                     /locus_tag="PXD41_000465"
     CDS             complement(7267..8913)
                     /locus_tag="PXD41_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288031.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            8989..11079
                     /locus_tag="PXD41_000466"
     CDS             8989..11079
                     /locus_tag="PXD41_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6288032.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11150..12838
                     /locus_tag="PXD41_000467"
     CDS             11150..12838
                     /locus_tag="PXD41_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL6288033.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLAAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12850..15666
                     /locus_tag="PXD41_000468"
     CDS             12850..15666
                     /locus_tag="PXD41_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL6288034.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15789..15920
                     /locus_tag="PXD41_000469"
                     /pseudo
     CDS             15789..15920
                     /locus_tag="PXD41_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(15975..16736)
                     /locus_tag="PXD41_000470"
     CDS             complement(15975..16736)
                     /locus_tag="PXD41_000470"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL6288035.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16748..17779)
                     /gene="murB"
                     /locus_tag="PXD41_000471"
     CDS             complement(16748..17779)
                     /gene="murB"
                     /locus_tag="PXD41_000471"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL6288036.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17883..18557)
                     /gene="crp"
                     /locus_tag="PXD41_000472"
     CDS             complement(17883..18557)
                     /gene="crp"
                     /locus_tag="PXD41_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL6288037.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18619..18837)
                     /locus_tag="PXD41_000473"
     CDS             complement(18619..18837)
                     /locus_tag="PXD41_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL6288038.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18840..19445)
                     /gene="slmA"
                     /locus_tag="PXD41_000474"
     CDS             complement(18840..19445)
                     /gene="slmA"
                     /locus_tag="PXD41_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL6288039.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19457..>19883)
                     /gene="dut"
                     /locus_tag="PXD41_000475"
     CDS             complement(19457..>19883)
                     /gene="dut"
                     /locus_tag="PXD41_000475"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL6288040.1"
                     /translation="SRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKAGETVLIPTGI
                     SIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWNRSQADFTVNV
                     GDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
BASE COUNT         5955 a         4150 c         4352 g         5426 t
ORIGIN      
        1 aagataaaac gcaaatatgc caaaaatttc aaaaagagca gatcagccaa gcggatttat
       61 ccgataaaca attcaggttt ttacagtatc aatttgcctg ccaattccat agtttattta
      121 aagataaaaa accgactaaa gagaaatata ttcactttac ccatttggcg gattatttag
      181 atttatcaaa tgtgccaaac caagagattt atactattca ttctttagct gaattaccta
      241 gtagcagtga acgtgagcct aaaattgtgc ttgctaaaaa cgcaattaat gaaaacttac
      301 cgcaagagtt ttacggcatt gtgataaccg actatctgtt tgatattacc ggcaaaaaaa
      361 tgtacggcac gctttattcc tcttatgata atgcccgaga ggagcgaaat ttaacgttta
      421 aaaaagaggt actggcagag cttgaggcga ggtattccgc ttggcgatat ttgccatatt
      481 ccgaacattt gatgggagcg gttgatgatt aaatataaag cagaaacggc tttgtcgctt
      541 ttggttgcca tcacgctatt tgcgattgtg gtgttgagtt tcagccagtg gcaatcggca
      601 caaaaccaca ggctaaatca acatttccaa cagcaacaag cggttatgat tttagaaaat
      661 cagcttgccc tcaaattagc cgggttagat tgtgaatcaa gtattactca aaatcagatt
      721 cgctatcaga ttcaatgctc tggcaatcgc ttaaccattc gctttccgtt aggcaaaatt
      781 gagctgaata atgattgaat cgtccctcgc tttggaggac aataattcaa ttagcgaggc
      841 gttattatgt ttacacttta ccaatccaac caaatttcat cactggcgga gatgctggtg
      901 aaaatccagc aggtaaaccc acttgaagat ccgtttgagc cggaaaccat tttgatccaa
      961 agtcagggaa tggcacagtg gctacaaatg cagattgctg aattaaacgg tgtgatgggg
     1021 aattgcgatt ttctctaccc tactacattt ttatggcaac agtatcggct gttgttcccg
     1081 gagctgccga aagagaatat ttttgagcgt agttcgttgg tttggcggat tatgcggtta
     1141 ttgccgagtt gcttgacact atcggagttt gctccgctaa agcgttattt aggtgatcaa
     1201 cctaataaag aacagtatca gcttaagctc tatcaacttt ctgccaaaat tgccgaattg
     1261 ttcgaccaat atttggtgta tcgcccccat tggctggtta gctgggaaga gggcaactta
     1321 caagcgatcg aaaatgagat aaaaattgca actgccgcta agccgattga ttttgactta
     1381 attcgagccg atatgaaatg gcaaagccat ttatggcaac agattgtatc tgatctgcaa
     1441 tcggaatctg atgagcaggt ttttactacc tcccaccgtg cctatttgca acaaaattac
     1501 ttcgctaagt tagatgacct tactgaaacg gaaaaagcca aattgccaaa acgcattttc
     1561 atttttggga tttcgtcctt ctcgccatta cagttagcgg tgtttaagaa actcagcgag
     1621 cattgcgata ttcacctgtt cttttttaac ccaagcgaaa aatattgggg cgacagtgtg
     1681 gaagaaaaag tgtggcaaaa attggcgtta agccacaaga tttcgcaaga cgatctggat
     1741 aacttattgg cggagcaaag aaataaacta ctgaatcttt ggggcaaaca agggcgggat
     1801 ttcttagctc aattaatcga atttgagccg aataccatgg atgtctttgt cgaaccagag
     1861 gaaaacagca acctcaataa actcaaaaaa cagattttca gcttagaaaa tgacgccact
     1921 attaccgatt taaccgccga taattcactc caaattcatt cgtgccacag cccaatgcgg
     1981 gaagtggaag tgttgcataa ccagctcctg aatttgtttg agcaagatag cactttgctg
     2041 ccgaaagata ttattgtgat gtcgccggat attaataaat acgctcctta cattgatgcg
     2101 gtgttttctc gctacaatac gggtaatcgg gatcctcgct atattccttt ttcattatcc
     2161 gaccaagcat ttacgcaggt tgatccgatt atccacagtt tcctgcaact gctggcaatg
     2221 aaagaaagcc cgtttaatgc cgaagaactg tttgatttac tggaagtgaa tgcgatccaa
     2281 acccgttttg gctttagtac ggaagatatt cataccctgc gggtttgggt gagaaatgcc
     2341 ggcgtacgtt cgggtgtaga aatcgagcaa cctcactggc aaaactacaa ttcgtgggaa
     2401 aacgggctaa accgtttatt gcttggctca agcctgaaag aagagcaggg gatttgggaa
     2461 aacacccttg cctttgggga tagctatggc ttaaatgccg agctggtggg gcgacttgcc
     2521 tcttttattg aggctttatt agcgtgggta aactttctgc aaacgccaca gccgttggca
     2581 gcgtggcagc aggcaataaa aaatttgact gctgatctgt atcaagaaaa tgccgaaaat
     2641 gctgcatcaa ttttattgtt gaataatgtg aatgatcaga ttatcgagca aatttccgca
     2701 acccattttt cagacgatct gcaaattgag gttttagcct tattgtttga gcagcagctc
     2761 agccaacatt cacagcagct taatttcttg gtcggacggg tgaattttgc caccttgctt
     2821 ccgatgcggg cgattccgtt taaggtaatt tgcttgctgg gtatgaatga ggcagatttc
     2881 cctcgccaac aacaaatcaa tagctttgat ttaatgcagt acgccccgaa aaagggagac
     2941 cgtgccaaac gtgatgatga ccgctacttg ttcttagaag ccttactttc cgctcagcaa
     3001 atgttttaca tcagctatat cgggcagtcg caaaaagacg gcaaagagat gctaccgtcg
     3061 attttggttt cccaactgtt agatgcaatg aatgaagctt taacgcctga atgcaagcaa
     3121 caattaagcg atgaagtgga agttttggtc agaaaacaac ctttaagtgt gtttagcaaa
     3181 aagaatttta cccacccacg agatcacgct tataacgcag agtggattat caagccgact
     3241 gttgccgtac aagattttct tagtgagcct ttaaccaatg aaagcgtggc ttcgctagaa
     3301 cttgatgaat taatctcttt tgtacaaaac ccgattaggt ttttctttct aaaagtgttg
     3361 gggatttcgt ttaacactta tgatgacacc attgatgaaa gcgaaatttt tgagatgtcg
     3421 gggctggata actaccggat tttaaacgaa ttattaacga taaatttagc acaacagcaa
     3481 cgtttttttg ccgaagagca actcaaaggc aatttacctg cttcttattt tgctcaaatt
     3541 gccacacaag atttgatcgg caaaattacc gaaatgcaag cggcgttaag ccactattta
     3601 gccagcgaaa gccgtatttt gagtgttaat cgggaggttg agctggaacg ccaaaccctc
     3661 accctaaacg gcaatattgc caacctatat cagaatgaag tggtgctatg gcgagtaggg
     3721 catttacgag ataaagacaa gattcagact tggatctacc atttattatt gtgtgcctat
     3781 ttccctgaaa aaacggtgaa attctattac cgagagggtg agcaagttgg tgtgttgagc
     3841 tttgaaaccg tctcgcagat agaggcatta tcgcaattaa gcatttattt gaatgcttat
     3901 ttggacggat tatcgcaagc ccagttagtg atctacgacc gaattgagga atatctcaaa
     3961 ggtgatggca caaacagcga acaagttctt atcgatttag cagagaaaga tgagcgagac
     4021 ggcagctatc tccatcggct tctcgctcaa actaaagagc tggattctca agcgattcac
     4081 caacgtactc aaagctggtt tagcttaatg aatcagaaaa tagcgaaagg cgattaacta
     4141 caagcggtcg tttttggctg aaaatttgca aaatgagaag gcgaataata attcgcctac
     4201 ctataaaaat agaatttttt ccgtatttta ctgtcaattt attactacaa tgctaatttc
     4261 aaaaggagat gtatgaaatt atcttttctt acccaattcg ttgcagcggc ttttgccctc
     4321 aatgtgatga cttaccctgc atttgcggaa gttgcaaaaa attctgaaaa aacgaccgct
     4381 agtcaacccc aatcccaact cggttttgag ctgattaaac agagcattaa caaaagcccg
     4441 aatgataaag cgatttatca aggtattaaa cttgataatg gaatggaagt gctactgatt
     4501 tccgacagtc aagcgaataa atcgttgatg tctgccatta ttccgattgg ctcaatggat
     4561 gacccgattt ctcagcaagg tttagcccac tatcttgagc atatgatctt gatgggctcg
     4621 aaaaactatc cggaaaccaa cagcttagac ggttttttaa ccaaaaatgg cggtatgaat
     4681 aatgcctcga ctgcttctca ccgcacggcg tattatctac aagtcaataa cgaagccttt
     4741 agcgaagcgg taacacgact ggcggatacg ttagctttcc cgttattgct ggaaaccaac
     4801 gccaagaaag aggttaatgc ggtcaatgcg gagatggtgc gagctaaatc gcacgatggg
     4861 catttattgc acagtgttaa tttagccacc gcaaacccgg ctcatcctgc taccaaattt
     4921 gcggtaggca ataaagagac gttatctgac aagccggata gcaaattaca aaccgagttg
     4981 gagcaatttt ataaacagca ttattctgcg aatctgttta aagtggtgct ttattccaat
     5041 caatcgattg agcagatggc aaaattggca gccaacactt taggcaaaat ggaaaacaaa
     5101 catttcagca taccgcaaac cgctgagcca cgttatcgtg atgaggacaa atcggtattt
     5161 attcaatata agccggtgaa atccaacaaa atgttagtca ttggctttga ttttccgaat
     5221 gacgaaatgc agtttaagca caaaaccggt aaatatattg cttatatgtt aaacaataat
     5281 actgacggca cgctttcgga ttacttgatt aaacaggggt tgtctgacgg cggtattgag
     5341 gcggttagca gtgccaatat cgggcgggat cgaggctcgt ttgacatcta tattgaactg
     5401 acagacaaag gtttgagcga gcaagatcaa attatttcat tggttttcca acaaattgag
     5461 aagatcaaac aagaaggcat tcaagagagc tattttagcg aagtgaaaga gagcctgaag
     5521 caggatttcc aacatttgca agtggaaaaa aatatggatt tcgtggaatt tattgccgat
     5581 caaatgctcc atttcccgtt agaacacgtt atcgatcagc cttatctgac cgaaacaatg
     5641 gataacgagg caattaaagc aaaattggcg gcaatgaata ttgataatgc ccgcattatg
     5701 ttagtcagcg atactgccaa aaccgacaag aaaacccctt attttgaagc aggttattcg
     5761 gtggcaaaaa tcacgcaaga acaaaagcaa aaatggctgg atttcagtaa aaatccacag
     5821 ctcaatttgc ctgaattgaa cccgtatttc actaccgatt ttaccttaaa caaggtcgaa
     5881 accggcttaa ctaaaccgaa attgattaac gaccaagcgg ggaatttaat ctatacaatg
     5941 ccgagcgtgt attttaccaa tgaaccgaag gctaaaatcg gcgttggctt taatattcgc
     6001 ccgagaaaag atgacttaaa gagcctgacc gcagcgtcta ttttgggtta tatgaacaat
     6061 ttagcccaaa ccaagttaga ttttcagtct tcggtggcgg gtatgaattt aagtttagct
     6121 ccggcggcaa acggtttagc cttaagtgca gagggttata cccaaaatct ggctaaatta
     6181 atgctagaca gcgtaaaaca gttcagccgc tttgagttta acgaagacgt gttggcacag
     6241 gctaaacaac gtttgcacca agagctggat cgtaacgaaa aagaaaacag ccttaatcaa
     6301 gctaatgcag cattaagccg ttttgcctct tacccttatt ttgatgtgcc gaaacagcgt
     6361 gagatgattg atagcattac ccttgcggat attgagcaac tacgccagcg aattttgcag
     6421 cagagcagcg gctttaagtt gttatcggtg gggaatttgt cggctgagca ggtttctgct
     6481 ctggcagagg atttacaagc ggtcataaaa aaccaaaaat ctgcaaatgc taccggacag
     6541 tatgtggatg tgagtaccag tcagcgtaag attaatgtga ttaaaagcgt gccgaatgaa
     6601 gataatgcgt tgctaatggc atttatgccg aacggctata acgagctgga aagccttact
     6661 cgagccaaat tgctcagaag cattatttcc cgttggtatt ttgatgattt gcgtactgat
     6721 aagcaactag gctatgtggt ttatgcgaca gataatatca tcgggaaaac cgccggtatc
     6781 cagtttatgg tacaaagccc gaataccaca ccggcaggga ttttagagca taacgaacgt
     6841 ttctttacac aaagtttcga acgtttaaaa aatctatctg atgaggaatt tggaaaatat
     6901 cgtgatagcc tagtggaaaa actgcaatat aaaccggagt ctttagcgga agagttttct
     6961 gagttcggtt cagactttag cagaaataac ccgaaatttg accgcttgca acaggtgatc
     7021 gaattaacca aagcactcac caaagcagat attgtggcat tttaccaaaa agctgtgatt
     7081 gaaaagcaag gcttcgtgtt tgtcagccaa gctgtcggca ccaaaaccaa agctgaagac
     7141 gttgcgaaat ttgacggttt tgaacagatc gaaagcattg aaaagctaca acgagagttt
     7201 gagattaagg attattagag agttattaga gagagttagg ggcgaaaaat tttcgcccct
     7261 cattttttaa tccacaattt tcaccggata taagtaagta tatccgaacg gactttgttt
     7321 gtagccttca acacgtttgc tggttggggc aaagttaatt gagtgagcca cgttaatcca
     7381 cggagcttgc tctcttaaga taacctgtgc ctgctcgtat aacttagtac gttctgcttt
     7441 atcagatgag cctaatgctt tttctaataa cgcatctaac tcagggttag taaagcgagc
     7501 atagttactg ttgccgatat ttggcgtgcc gaatagtggc gataagaagt tatccggatc
     7561 gccgttatcg cccgaccaac cgtaagttcc ggcggttaat tcaccggctt tggtacgctt
     7621 gatgtaatca ccccattcat aggtgactaa ttttgctttt acgccgattt tttcccagtc
     7681 ggcttgaata atttcagaca tacggcgtgg gttcgggtta gaagcacgca ccacaggctg
     7741 cacccataat tcggtttcaa aaccgttcgg gaagcctgct tcagctaata gttgcttcgc
     7801 tttttccacg ttatattctg aatccgctaa gctgtcgtta tagccccaaa tggttggcgg
     7861 aagtgggttt ttcgccgcaa aaccgttacc ttggtaaact acatcaataa tcgctttttt
     7921 atccactgct aagtttaacg cttggcgaac tttcacgtta tcaaacggag ctttttcggt
     7981 attgaatgcc acataagcaa tgttcaaacc cggttgagaa agtaaattga ttttcggatc
     8041 atttttcatt ttctcaatgt cggttgcatt tgggaagtcc attaaatcac attgaccgga
     8101 ttgtaatttc gcataacggg ttgttgcatc cggcacgatc tcaaaaatca aacggtcaat
     8161 gtcaggctta cctttccaat actctttgtt tgctacataa cgactggctt ggtctagcac
     8221 ataaccgcta aacacaaacg gacctgtgcc gattggcgtg gtatctaccg cttcaggtat
     8281 gccggctttc atcattttat ccgcatattc cgccgaataa atggaggtga aatccatacc
     8341 aaggctggat aagaatgacg catcacgttt ggttaaggta atacgaacgg tgctgtcgtc
     8401 cactttttcc accgatttca ataatgtcgg gaatttcatt gcgttgaaat acggataagt
     8461 gccgttagag acggtgtgat acggatgatt tttatctaac tgacggttaa atgaaaatac
     8521 tacatcgtcc gcattcaatt cacggcttgg agtgaagtct ttgtttgaat ggaatttcac
     8581 gcctttgcgt aatttaaagg tgtaagttaa gccgtcttcg ctgatttccc agctttctgc
     8641 caatgccggt tcaatatcgg ttgtacccgg cacaaattcc accaagcggt tgtaaatttg
     8701 ttgcgagctg gcgttataag ataaaccgtc catcattaaa atcgggctaa aaccggttgg
     8761 cgaacggcta acgcagttta caaaggtttt ctcggtttgc ggttttgctg ctgccgcagt
     8821 aggtttattt tcgttgcttt tatcatcgca agccgctaga gctaataccg ctaaaacgct
     8881 tgcactaatt ttggttaacg ttggaaattt catattattc tccgcttaat cttaggatta
     8941 acttacgaag attacctttt ccacaatgag gagtaaagaa caaaaagcat tatttttgca
     9001 aatcaatcca tagaattaga taccgtcaac gtcattgcca cccgtgatcc aagtaaattt
     9061 gccgatacgc cacaaaaaca aactaaagat gcacttttgg taaaacaagc gacgagtgtg
     9121 gcggcggcat taaaagcgtt gccgaatgtg gatgtgcaag gaggggcccg tgcgattgtg
     9181 cagaagccgt ctattcgtgg gttgagcgat aatcgtattg tgcaggtgat tgacggagtg
     9241 cgtcagaatt ttgatttggc tcaccgtggt tcttattttg tgccgatgtc attgattcaa
     9301 gaaattgaag taatcaaagg tccaagcagc tcgttgtggg ggagcggtgc cttaggtggg
     9361 gtggtggcaa tgcgcacacc gaatgcgttg gatttattga aaaataatga caaattcggg
     9421 gcaaaaatcc gtcaaggtta tcaaacggcg aataatcttt ccgaaaccga agcctcggtg
     9481 tttgcagcaa atgatcggtt tgatgccctg ctgagtggtt tctacaataa tgctgacaat
     9541 ttgcgtagcg gtgaaggcaa ggaactgaat aacacgggct ataagcaagc cggcggttta
     9601 gtaaaattcg gctggcaaat taacgatact catcgtttgg aattatccca tcgtcatagc
     9661 caatttaaac aaactgcacc gggtaataac gaggtagaaa atcaatttac cgataatgat
     9721 gttagtgcac aaattagtgc ttggcatgcg gctaatcctg gaaatccaag taatccagta
     9781 tatcttgcga aaatgttagc cttttacggt caattacatt caagtcttgg tagtgtgagt
     9841 tatttaagtg atcaaaaaat taccgataaa agcacctcac ttaactacta tttcaaccca
     9901 agcaatcctt atttgagcac acaagtgaca ttatatagca atagtaccac tgaaaacgaa
     9961 catcgaaaaa taagtggtgt ggaagatcaa actaaactaa gcactcgtgg tgtgaatatc
    10021 cgtaatcatt ccgaattgtc ttggttctcc ttggtgtatg gcgtggatta tatgttggat
    10081 aaagtagcca ctcagcgtgg gagaaataat acggacgcac aataccgtgc taatccttat
    10141 gatgctaaat ctaaaactac aggtgcttat ttaattgcac atattccgct gtttgatgaa
    10201 aaagtggtct tttctccgag cgtgcgttac gaccgtttcg atacttcaag tgaaacggtg
    10261 aaatataaag acagccattg gtctcctgct gcaaaactta cttggaaagc gacaaattgg
    10321 ttggatttaa ccgcgaaata taacgaagct ttcagagccc cttctatgca agaacgattt
    10381 gtgagcgggt ctcattttgg taccacagtg agaggattac ctattaataa tattttctta
    10441 actaacccta atttacgccc ggaaacggca aaaaataagg aagtaacctt caatgtacat
    10501 tttgataatg tcatctcgca aggagataaa tttaactttg aagcgactta tttccgtaat
    10561 gatgtgaagg atttgattaa tcttcaagta ttcaaagcaa atcctacaag cccaatggaa
    10621 tttattccca ctcgttccca atatcaaaat attgcgaatg cacgtttgag tggtattgaa
    10681 ttacaaactc gttatcaaac tgaacgtttg gcagtttttg ctaactacgg tagtacaaaa
    10741 ggtaaagata aagacagcgg ggaagccttg tcgaacattg ctgcaagcaa aatcggcttc
    10801 ggggtcaatt atgccgtggt gcaagacaaa ttcacggtgg gggcaaacgt aacccgttat
    10861 caagcacaac atcgtgtgcc gaaaaaccac ggcgtgactt accaaggcta tacgctgacc
    10921 gatctacacg ccacttacgc cccattaaaa ggcgaatgga aaaacctgcg tttagacgtg
    10981 gcggttgaaa acctattcga taaaaaatac caaccggcat tcagcttaat ggaaggcagc
    11041 ggtcgtaatg tgaaactcag tgcggcttac agcttctaat gtctttaacg gaagacggca
    11101 caagcggtcg ttttccggtt attttttgca atattaaaag ggagttacta tgaaatttta
    11161 tccgtcgctg atcgcaagtg cggtcagttt tgccgttgtt ttgagtggac aagcggcagt
    11221 gaatgtgccg gatgccggct cgttacagcg tgaattagac caacgtcaag ctcaacaaaa
    11281 agtcaaaccg agtggcgaat ggtttaatca agcggcaaaa gcaccttata ccgcaacgga
    11341 cggtcaagaa ctgacatttc cattaactca ggtacaagtt tttgatcgaa ccaaccaaga
    11401 aatctctacc ccggaattag ccccgatttt ggcaaactat gtgggtaaag cggtttcgct
    11461 gaccgattta agcaacttgg caaatgagat caccgagttt tatcgtagcc acaattatct
    11521 ggtggcaaaa gccattttac cgccacagga aattgaacaa ggtaaggtga aaatcctgtt
    11581 gtttaaaggc aatgtcggtg aagtgcggtt acaaaatcag agtgctttaa gcgataaatt
    11641 tgttgcacgc cttgccaaca ccacagtgaa tggttcggaa tttatcctaa aagacgaatt
    11701 ggaaaaattt gccctcacga tgaatgatgt tcccggggtg aataccggct tggagctttc
    11761 tgccggtaag caagcaggcg aggcgaattt gctgattaag ctccaaaatg ccgagcgttt
    11821 ctcaggctat gtatcggcag ataaccaagg caataaaaat accggacgtt accgtttagc
    11881 cacagggata aaagccaata atctgatagg ttggggcgat gagttgaaag tggatttgat
    11941 gagttccaac aacgctaatt taaaaaatgc gcgtttggat tattcgagct tgattgacgg
    12001 ctacgctacc cgtttgggct taacggcgaa ttatctcgac tacgaattag gcggtaactt
    12061 taaagccctg caatcccaag ggcatactca caatcttgcg gcttatgtgt tgcacccgac
    12121 aatccgcttg ccggattttc ggttaaacac caaagtcagc tttaatcatc aacgtttaac
    12181 cgacaaacaa caagcggtca atgtggcaca aaaacgccaa gtaaacagct taacggtggg
    12241 cattaacggg tcgtggaatt cgcttaaaga cggcacaagc tatttctctc tgtctgcctt
    12301 gttcggcaat ttagctaacc acaccaacga gcaagcgcat tatgtggcaa cagattttca
    12361 gcccaaatcc cgttttacgg tctatcaata cagcctgtct cacgaacaag cgctgccaaa
    12421 atcctttgcc ttcaaccttg gcgtgaacgg gcagtttgcg gataaaaccc tcgacagctc
    12481 acaaaaaatg ttactgggcg gtttatacgg cgtgcgtggt catcaagccg gtgtcgcttc
    12541 ggtggatgag gggcatttag tgcaaaccga actcaagcat tatttaccgc tcttttccaa
    12601 aagcctgctg accagctcgg tcttctatga ttatggttgg ggaaaatact ataaacacag
    12661 cggatttttg gcgcgtggtg taaacaatag cgtgaaatta cagagtatcg gagcagggct
    12721 ttcgctctct gaagcaggca gttatgccat taacgccagt gttgccaaac cgctgggtaa
    12781 aaaaatcgag aatgcagata aacaccaatt ctggttctcc gccatcaaaa ccttctaagg
    12841 agacaaacta tgtttaaacg taatgcaatt tctctctgca ttttgaccgc ttgcagcggt
    12901 ttagcctatg ccaatacagc agatttgccg caaggtgaaa gggtgcgtgt cgggacggca
    12961 acgattgagc gcacaaccga taaaatgacc gtgaatcaat ccagcaataa agtacaaatt
    13021 gattggaaca gctttgatat tggtaagaat aaagaagtgg aattcaaaca gccgacagag
    13081 atggcggtgg catataaccg tgttaccggc ggaaacgcca gtcaaattca aggcaagctg
    13141 accgcaaacg gcaaagtgta tttagccaac ccgaacggtg tactcatcac caaagatgcg
    13201 gaagtgaatg tgggcggttt gttagtgacc acaaaagatt tagaaaaaat cagcgaaaac
    13261 ggcacaaaag ataaattcag tcgcaaatta gcgaaagaag gcaaaattct taaccaaggt
    13321 aaaattacgg ccaaaggcga gcgggctttt gtggtattgg tgggcgacga tgtggctaat
    13381 gaaggggaaa ttaacgccaa aaattattac cacaaagaaa cgaaaaaagt caccgaatgt
    13441 tatgacgatt cttggagctt ggtaaaacaa tgctacgatt ttgataaaga aatcgtgaaa
    13501 agtaccagtg gagaagtgca tttatcctcc ggagaaaatg tcacctttac tttaagcgac
    13561 cgctatattg atgtggcgtt agacgataat acggtcaata gcattatcaa aaatgacggg
    13621 gcaatcatcg ccaatggtga cattaccctc actgccaaag ggcgaaatca agccttagac
    13681 agcttaatta tcaataacgg cgtattgcaa gccaataagg tgcaaaataa aaacggtacg
    13741 atcattttat ctgccggtga aacccaatta cacgaaaaaa gccaaattaa aggcgagaaa
    13801 gtgagctttg ccgaagcttc ttattacggt ccgacagaag acattaaagt ggtttccaaa
    13861 accggctcaa aagtgaccgc acctgtgatc gatttcaaag gtaaaaccgt gaatattcaa
    13921 ggggaatttg ggcgtgaaga cagcaccgat ctctataacg atgaactaca aatcctcaaa
    13981 accacggtga atattgaagt cccgaatacg gaagatattc gcattgcaga taccgacaac
    14041 ggaggtagcg gttcctttat acaagcgggt gctttagcct cattacttgc aaataacgga
    14101 cgggttaatg tacagggcaa aggttttgat gtctcaggca agttgaatgt gaatgccttt
    14161 aaacaaacgg attccgtgct gaaatttatc aatcaggcgg gcatcaatat ccacaatgcc
    14221 gatattcacg caaacgggcg tttattcttt gtgacaaact tgccgaatga caccgatttc
    14281 caatcgaata tccgcattac cgacagcaaa atcaacttag gcaacggctc aatgggcttt
    14341 ggtcgcagta gcaaacgttg ggaaatgcac gatgtggttc gacgtgccga tacggaactg
    14401 cgtaaaaaat tcaatctgga tatgaaaaac gtggaattaa accaagtgga tgattttgtg
    14461 gtagcgggcg gtttccaaca agttaatttg gataacgtga aagcccgtgg caaaaccaac
    14521 ttctatctgg attccggcaa ctcccgcatg tttgtcggtg agcagattta tgaatatggc
    14581 gtaaccgata ttgaaaaacg cacccaattg gcgaatttag accagcgtag aaaacgttgg
    14641 aattcggata actatgatga gaccgatctc aactgggaat acaaccaacg ctttgacggc
    14701 tttgcagcaa aacacaatca ccgcgcgccg attgccgata cggaaatcaa tattgccaat
    14761 agtgatatca gcttagataa cggttttgtg catttaatgg cagaaaaaat caatctggac
    14821 gacagcaaaa tcaatatcac cttcaaccaa gacaacagct tggatgaaag tacccaaatc
    14881 aaccgcttag gactaaacgg caaagtgtcg atgaaaaaca gccatattaa cgtagtgggc
    14941 gatgaaaaag acggtatctc accggctcgc cattatgcca cgatgttctt agtgggggag
    15001 ctgcttggtg aaaagagttc tattttcctc aaatcccacc aaggtgcagt attgagaacc
    15061 gacagcaatg ttacaattgc cggtaaaaac agcaaagacg acctcaaaat taccgccatt
    15121 accaccggta aaaaaatggg caatgaaatc atcggaccgg acggcttgcc aacctcggaa
    15181 gataacgatg ccaacgccag caacaccgcc tttgccatcg gctatgaacc taacgctacg
    15241 gctatcgtcg aaaatgcaag cattaccgca ttagcaccaa acggcggctt ggcatacacc
    15301 ggcacgtcta aaacccaaat tgacgcgaag gataatgcta cctttacctt ctttgaaaaa
    15361 cctcgagccg gctatgacaa attgcttggc gacatcaaag gtaaccccga taaattaacc
    15421 ccacgcgatt tcgcccgttt atacgacaac attaaaggca tcaaagccag cagcctatcc
    15481 gaacaacagc ttggcctagc agacaccgcg aagaaaacca gcgaacacac cttagcaaac
    15541 agcctagacg tagaaaattt ggtttcagtg acagtgtgtg atgagcagaa taagtgtgag
    15601 gagcgtatgt taggtaacaa aaataccaat gctaaagtta ttgtcggaga tatcaaattt
    15661 gagtagcgtt gaagaaagtg gtagaagctc agacttgatc tgataaagca ctataaaaag
    15721 tgagagtttc ccgtttagaa tatgagtgtc aaaattcaat ctaaacaaaa aggaaactct
    15781 catgttttat tacttacaat cccctcatta aacacaagac cggtttatta aatttagcag
    15841 aagaaccggg caatatctct caagcctgca atgtggtggg tatgagccta gatacattct
    15901 attgctatca acaagcggtt atttttggca actaatttgc aaaaaaacaa taaaatccga
    15961 ccgcttgtag agggttaatc cgcccttagt gaaatttcac cgatgccgaa atagcggagg
    16021 ttgtcgccct gttttagaat gagttcgccc tgctcgttaa tgccttgcga aatgccgtgg
    16081 atttcttcgg cttcggtaat gagcttaacc gctttatggc ggaaaaggtc gaaactttgc
    16141 cagcgttcgg cataatgagc gaagccgaca agcggataaa ttttgagatt tttttgcaat
    16201 tcataggcta aacggcaaac taattcgttg cggttgaaat gatattgcga taaatctgcc
    16261 cacgcttgcg tcacaatatt ttcatccact tttgccattc ctaggttcag cccaatgccg
    16321 ataaccacat ctaaaccatt gcgattggct tgggtttcca acaaaatgcc ccccattttt
    16381 ttgccttggt aataaatgtc attcggccat ttaatttgaa tatcttttac attttgaaca
    16441 gtaaggcttt ccgcaatgat caaggctacc actaaactta agggcggtaa atctgccgcc
    16501 tgctccatcg ggtaatgcca taaaatcgag aaatagagat tttcactctc gggcgaatac
    16561 caagttcgac ctcgtctgcc acgtccggca gtttgttttt cagcgaggca aaccgtgccg
    16621 ttttccaaac gttggtgatg agtgagcaaa tattcattgg ttgaatcaat ttcatcgaac
    16681 acaacggctt gcccgcaaat taaagcattt tggatttgag cttggttaag tttcattatt
    16741 tccccactta gcgagtgatt ttttcgctat cgacctcacc gtttttaccg ataaaacgca
    16801 cttcaggctg aatttctacc ccaaattttt ctttcactct ctggcgaacg gttttggcta
    16861 gagccaagac atcttgccct gttgcatttt ctttattaat cagcactaag gcttgctggg
    16921 tatgtaccgc cgctccgcca atttgtaagt ctttcagccc ggtttggtca attaaccaac
    16981 ctgcggctaa ttttaccgtt ccatcagctt gagggtagtg aggaatggct gggaatttgg
    17041 cttgtattgg tgcaaattgt tcgtttgaaa tcaccggatt tttaaaaaag ctgccggcat
    17101 tgccaaattc gtcagggttt ggcaatttgg aggagcgaac cgcacagact tcatcaaaaa
    17161 tctgtattgg cgtaacggtt tccggattga gttgggctaa tgatccgtaa cttagcaccg
    17221 gtttccacgc tttggctaac tttaagccta ccgagataat cgcaaattca tcacggtatt
    17281 ggtgtttaaa cacactttca cgatagccaa attcgcactc ggatttggat agcttaaaga
    17341 gttctccgga acgtaaattt aacacttcca cgaaatcaca tacctgttca aattcaaccc
    17401 cataagctcc tatattttga atgggagcag agctggcgac acccggaatt aacgccagat
    17461 tttcaatgcc ggcaatattg tgtgccaacg tccatttaac caattcgtgc cagttttccc
    17521 caccttgaac gtgcaaatag tggaaatgtt cgtcttcgtg gtgcgtaatc cctttgagtt
    17581 tatttactaa caccacaccg tcaaaatcct ctaaaaacaa aacgttagag ccttgcccga
    17641 gaatcaagat tggcagttga gcgttaaagg ctttttgcca ttcgctcaat agctgttcga
    17701 ctgtggtaaa ttcaataatt tgggtcgctt ttgcaggcaa atggaaagtg tgaaaagggg
    17761 ttaagctatg tttcatcatc aaattagtta gttaagaagt ggaaataaca agcggtgata
    17821 tttttacaaa attttgcaat taagattttg ggcaggcaca ggatctgccc ctacattcag
    17881 aattaccttg ccccatatac cacaatggtt ttgccgtgag cagaaattaa gccttcgtct
    17941 tccaacattt ttataatgcg tccaacggtt tcacgggaac aaccgaccat ttgcccgatt
    18001 tcttggcggg taattttgat ctgcatacct tccgggtgag tcattgcatc cggcatttta
    18061 gctaagttga gcaaggtttg agcaatgcga ccggcaacgt ctaaaaaggc aagattaccg
    18121 acttggcgtg aagtttgacg taaacggcga gccatttgtg ccgataaata cattaaaata
    18181 tcggggttta aatggactag ttgtttgaat tttttatagg aaatttccgc aatttcacaa
    18241 ggacctttag tgcggacgta agcggtacgt tgttggactt tttcttcaaa taaacttaat
    18301 tcaccgacaa actcacctgt gcctaagtta gttaagagca tctctttggt ttcatcatct
    18361 ttgatgtaaa ccgacactga gccattcacg atgtagaaaa gtgattctgc atcttcaccg
    18421 gcgtgaatga gtgtatattt cgccggataa cgatggatat gacaatgggt taaaaaccac
    18481 tccaccgcag ggtcgtgaat agagggcgga ggagttacat tttccagagg agctgttgaa
    18541 agtgtcatat cttgcatagt atttcctata actcttatac taggttaaat ttttagaatt
    18601 ttaacacgaa attaaaggtt agcctaaaaa agattttttg tctttaatat caaggctttc
    18661 gtgtaattcc gaccaaacaa tcaccacttt atctgcctta agttgtgtga gtaatcgttc
    18721 tcttttttct gccagagaaa gttccctttc cccgtagtct gtgccttctc gtaaaatgaa
    18781 ggaatctaaa atattatgta aggttgattc ttcgagttct tgccaaggta taatcataat
    18841 taatcaaata aaggcttaat aaatgcccac tgtttttcaa aatgttggtg ttggttatag
    18901 ctgaaattag aacgaaccaa gcgtaaaaat tgcccttcgc agaaattcac taaataaccg
    18961 gctaaggctc tttcgtcttc aaagctcttg cgttcacgca gtttactaag ttgcaaaata
    19021 ttggcaaatt gtaactccaa gttatcaaag aattttgcca ctcgagcttt gagcaactcc
    19081 tcttcaaaca tcaaggcgtg tccggtcagg atgcgggtaa cgcccgggtt tttgcgagca
    19141 aattctaaaa tcacatataa aattgctcgc accgaattgg cactgctgtc ttggcgttta
    19201 ttggcgtgaa tatagctggt gagggtctgc tcgattttct cgattaacgc ttcaaacatc
    19261 ttggttttac ttgggaaata gcgatacaac gccccctccg acacccccac cgcagcggct
    19321 aaacgctcgg tagtgatacg ctgcattccc tcttcagaat ttaacaagct gattaacact
    19381 tccaacactt gttggcggcg ttccaccact gattttttcg gcattttaat tttaggttct
    19441 gtcattgcca atcctattat tgcttacctg aatgcccaaa accgccttcg ccacggtcgg
    19501 tctgctcaaa ctcttgcaca atgttaaaac ttgcctgaac caccggcaca aagactaact
    19561 gagcaatacg gtcgcccacg ttcacggtaa aatcagcttg gctacggttc caaagcgaca
    19621 ctttcagctc gccttggtaa tcgctatcga tcaagccgac taagttgcct agcacgatcc
    19681 cgtttttatg ccctaaacct gatcttggta agatcaccgc tgccaaattc ggatcggcga
    19741 tataaattga aatccccgtt gggatcaaca ccgtttcacc cgcttttacc gtcagcggct
    19801 cgttgagcat cgcccgtaga tccaagcctg ccgagccttc ggtcgcatac gcaggtaatg
    19861 gaaattcatt gccgatacgg cta
//
LOCUS       DANLXB010000020        19819 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLXB010000020 DANLXB010000000
VERSION     DANLXB010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19819
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..372)
                     /locus_tag="PXD41_000476"
     CDS             complement(<1..372)
                     /locus_tag="PXD41_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6288041.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEAERLAAEKAAKEKAE"
     gene            575..2029
                     /locus_tag="PXD41_000477"
     CDS             575..2029
                     /locus_tag="PXD41_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL6288042.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2104..3393)
                     /locus_tag="PXD41_000478"
     CDS             complement(2104..3393)
                     /locus_tag="PXD41_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288043.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(3597..3932)
                     /locus_tag="PXD41_000479"
     CDS             complement(3597..3932)
                     /locus_tag="PXD41_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL6288044.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(3922..4356)
                     /locus_tag="PXD41_000480"
     CDS             complement(3922..4356)
                     /locus_tag="PXD41_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL6288045.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(4411..5466)
                     /gene="modC"
                     /locus_tag="PXD41_000481"
     CDS             complement(4411..5466)
                     /gene="modC"
                     /locus_tag="PXD41_000481"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL6288046.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            complement(5453..6145)
                     /gene="modB"
                     /locus_tag="PXD41_000482"
     CDS             complement(5453..6145)
                     /gene="modB"
                     /locus_tag="PXD41_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL6288047.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(6329..7084)
                     /gene="modA"
                     /locus_tag="PXD41_000483"
     CDS             complement(6329..7084)
                     /gene="modA"
                     /locus_tag="PXD41_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6288048.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(7105..7866)
                     /locus_tag="PXD41_000484"
     CDS             complement(7105..7866)
                     /locus_tag="PXD41_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6288049.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(7868..8776)
                     /locus_tag="PXD41_000485"
     CDS             complement(7868..8776)
                     /locus_tag="PXD41_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6288050.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(8782..10839)
                     /gene="dnaX"
                     /locus_tag="PXD41_000486"
     CDS             complement(8782..10839)
                     /gene="dnaX"
                     /locus_tag="PXD41_000486"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL6288051.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(10930..11469)
                     /gene="apt"
                     /locus_tag="PXD41_000487"
     CDS             complement(10930..11469)
                     /gene="apt"
                     /locus_tag="PXD41_000487"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL6288052.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            complement(11597..12547)
                     /gene="lpxM"
                     /locus_tag="PXD41_000488"
                     /gene_synonym="msbB"
     CDS             complement(11597..12547)
                     /gene="lpxM"
                     /locus_tag="PXD41_000488"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL6288053.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(12988..13671)
                     /locus_tag="PXD41_000489"
     CDS             complement(12988..13671)
                     /locus_tag="PXD41_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL6288054.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(13680..14312)
                     /gene="rsxG"
                     /locus_tag="PXD41_000490"
     CDS             complement(13680..14312)
                     /gene="rsxG"
                     /locus_tag="PXD41_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL6288055.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(14312..15367)
                     /gene="rsxD"
                     /locus_tag="PXD41_000491"
     CDS             complement(14312..15367)
                     /gene="rsxD"
                     /locus_tag="PXD41_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL6288056.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(15413..16048)
                     /locus_tag="PXD41_000492"
     CDS             complement(15413..16048)
                     /locus_tag="PXD41_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL6288057.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(16041..18335)
                     /gene="rsxC"
                     /locus_tag="PXD41_000493"
     CDS             complement(16041..18335)
                     /gene="rsxC"
                     /locus_tag="PXD41_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL6288058.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(18322..18939)
                     /gene="rsxB"
                     /locus_tag="PXD41_000494"
     CDS             complement(18322..18939)
                     /gene="rsxB"
                     /locus_tag="PXD41_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL6288059.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(18939..19520)
                     /gene="rsxA"
                     /locus_tag="PXD41_000495"
     CDS             complement(18939..19520)
                     /gene="rsxA"
                     /locus_tag="PXD41_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL6288060.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
BASE COUNT         5607 a         4523 c         4145 g         5544 t
ORIGIN      
        1 ttccgctttc tctttcgccg ctttttccgc cgctaaacgt tctgcttcgg ctttttcttt
       61 cgctgctttt tccgccgcta aacgttccgc ttcggctttt tctttcgctg ctttttccgc
      121 cgctaaacgt tctgcttccg ctttctcttt agctgctttt tctgctgcta aacgttctgc
      181 ttctgctttc tctttcgctg ccttgtcttt tgctgctttt tctgctgccg ctttatcggt
      241 ttgttgctga gtagtttgcg gtttagtatt cggttttgcc acattgtttg agctactgcc
      301 cgaaccacca ctactacacg ccgttaaacc caataaaatc aaactggcta aagttacttt
      361 tttgatagac ataaaatgtt ccttttgtaa gataaacaaa aatagatgtg tataaaacac
      421 acgcatattg tacaaaaaaa aaacaactcg tcatcaagta ctttttaaga tttttttgtt
      481 aaatttctcc taaatattct acaatgtcag aggtctatat cagcttgaat acaagcggtt
      541 attttttctt aaaattttac aaaaggggct tattatgtct gaaatctcaa cgctcgcacc
      601 gcagctactt tggcagtggt ttgataaagc ctgtgctatt ccgcacccgt cttaccacga
      661 aaatgaactg gctgaattta ttgtgaattg ggcaaaatcg aaaaatttct ttgttgaacg
      721 tgatgaagtg ggtaatgtgt taatccgtaa accggcaact aaaggtatgg aaaaccgcca
      781 aactgtcgct ctgcaagccc atcttgatat ggtgccacaa gccaataccg gcacggttca
      841 cgatttcact aaagatccga ttcagcctta tattgacggc gaatgggtaa aagccaaagg
      901 cacaacattg ggggcagata acggcattgg attggcttcg tgcttggcgg tgttggatag
      961 cgatgattta gcccacccaa ccattgaagt gttgctcaca atgaccgaag aagccggtat
     1021 ggaaggggcg attggtttac gcccgaactg gctaaccgcc gatattatga ttaacaccga
     1081 caccgaagaa aacggggaaa tttacatcgg ctgtgcaggt ggggaaaatg tgaatgtgac
     1141 actgccaatt ttcttggtgc ctcatcagca agatagtgca gtaaccgtta cgcttaaagg
     1201 cctaaacggc gggcattcgg gctgtgatat tcacaccacc cgagcgaatg cgattaaagt
     1261 gttcgcccgc attttggaac aagcccacaa cgaagtggaa ttccaaattg cagaaattca
     1321 aggcggttcg gtgcggaatg ccattccacg agaagcccac gcaaccttgg ttttctctgc
     1381 aaaaaatcag caaaaattaa ccgcttgttt aagccaaacc gccgaacaag taaaagcaga
     1441 actcaaaatt gccgagccaa acttccaatt tttaattgaa gaagctcaac tgcctgagca
     1501 agcctttgac cttgccagca ctgctcgagt aatccatttc ttaaatgtga tgccaaatgg
     1561 tgtggtgcgt aatagcgatg tggtggaaaa tgtggtggaa acctcactca gtattggtgt
     1621 gcttaacacc gaagcgagtg aggtgaaagc gaccattctt gcccgctcat taattgaggg
     1681 cggaaaagag gaaattcgca gtaaaatccg ctcattaacc gcattagtgg gagcagaagt
     1741 ggaattttcg ggcaactacc cgggctggga gccaaaccca aattccaaaa tcacgccatt
     1801 aaccaaagcg atttatgatg aaattttagg ttatgaatct caaattaaag tgattcacgc
     1861 agggctagaa tgtggcttaa tcaacaaaat ctacccgaat atggattttg tctcgattgg
     1921 accaactatt ctcaacgccc attctccgga cgaaaaagtg catattccgg cagtggagat
     1981 ttattggaaa ctcctaacca aactacttga acaagcacct gagaaataaa tttaatcaaa
     2041 aaaattatat aatcttgccc cgtaattaat tgaataaaac ctcaattaat tacggggtag
     2101 ctcttatttt ctctgtttta aaaaatgtac cgtgaaagca gcaattaata agacgactgc
     2161 tgcacctaaa taaagctcgt tctttttcca gccggcgtct aataaaatac ctgcaagagt
     2221 tggggaaaca attgagccta aacgccctac accgatggcg gtgcctacgc ccgtgctgcg
     2281 gaaatccggt gcgtataggg ttgggttaat ggtataaagc ccggtaatgc agccgttaat
     2341 taatccgcca accaaaatgg ctagtgttat cgcaagccct aaattgccgg caaacacaaa
     2401 ggcaaccaca gcagatgcag ccagaatact gaatgcctgc aaaatatgtt ttgccgccca
     2461 gcgactgact aaaaagccga aaattaacga gccgattgta ccaccaactg aaattgccat
     2521 tcccacagtt tggctttggg ttttaggcat tccggcttct tctaatagtg ccggagtcca
     2581 agagctgata aagtaaaatg aggctgaaat tgcaataaag gcaagccaaa ttagcaacgt
     2641 attgcggcga tattcaggct cgaataaacg ggtaattgcc actttgcttt tactttttgc
     2701 ctcaatttca ggaagttccc agccgtttcc taagcctaat ttaacggcaa tttgatttaa
     2761 acgagcttta gcattcaccg ggtgttttga aattaaaaat tccaccgatt cgggcaatac
     2821 aaagaataat aaaacgaata ccgcaccggt taaaatcgac ccaacgagga aaaccgcacg
     2881 ccagccatat tctccttgca ataacaccgc agacattccg cccagcattg caccaatccc
     2941 aaagcctgag gcataaattg caatcgctaa gccacgccat ttttggctgg agtattcact
     3001 cactagcaca ttagtgccgg ttaaaatggc ggctacgcct aaaccggtta aaacacgcca
     3061 tacaccaatt tcaaacgcag aagtagcgaa ataagttagg agcattccta acgtggctaa
     3121 gcctgtgccg attaaaagca acgggcggcg accaaattta tcagcaagtg gtgaaagaaa
     3181 gagtgagcct atcgccatac cgaataaacc ggcactcatt aagctgccga tggctgcacc
     3241 gtctaactgc aattcttctc ggatgctttt ggcggtaaag gcgagtgcca ttaaatcaaa
     3301 gccgtccagc atattaagta acaccgtaag cccaaccact aaccattgga atgaagtcat
     3361 tttgttatga gcaatttttt gacgaatatc cataagctcc ctctgcatca aaattgataa
     3421 aattttattt agagtgaact atagaaagtt gattaaatat aatcaaactc aaaatttaca
     3481 taaaatttat gaaagatttt catatttaat caaaggaggg aatttatagc aggaatggcg
     3541 agggagaaaa tagatagggc gaataattat tcacccctag attgaatagg agaaagctat
     3601 ttcttctccg cttgctcagc cgctcttttg cgtctgattt ctttcggatc agcaattaac
     3661 gggcgataga tctcaattct gtcgccttct tccaccgttt cattcagttt tgccgggcgg
     3721 ctaaaaatac cgactttgtt ttcacgcaag tcaatttcgg tatatttttc caacacgccg
     3781 gagagcaaaa taatagtttg aatggtcgcg ttttgcggta cttgcagttt tttcagaaaa
     3841 tatttatcag ggtaagcata aagcacctca acattaattt tctgttcttc acttttttgt
     3901 tcttctggat tttgacgttg ttcagacacc atacacctct tttgcacgtt gtttgaaagc
     3961 atttaccatt tttaaagtta attcgttgaa caccttgccg aacaccattg ctacaattgg
     4021 gctggaaaat tcaaaattta attgcagggc aattttgcaa ctttgctcat caaagggggt
     4081 gaatgtccaa gctccgtgta aatggcggaa aggcccttca attaatgcca tctcgatttt
     4141 atagggcggc gtcattttat tgtgggtact gaaagtttgg ctaatgccta atttctgaat
     4201 gtgtaactct gcctttaatt cattttcgcc ggtgctaagg gttttggtac tcacgcagcc
     4261 ggataaaaat tcggggtatt tttcatactg attaacaagt tgatacattt gctcggcact
     4321 ataaggcacg agggcagatt gattaacgat tggcataatg tctcttttgg gaattaacaa
     4381 gcggtcatat tttagcgtaa atttgcaagc ctataaagaa acgcttttga tttgaagata
     4441 gacctcttgc tccggttgaa tcgctaattc attaaaagac caaaggctga tcgtactcca
     4501 aatttgctga ttttcgactt gaattgccag atcaacccga tctaaatgcg tttctatttt
     4561 ccgaacattg ccttttaaca cattacgaat tgagctttga gtcggttttt gtaagctgat
     4621 tgaaacctct ttgctggcaa tagttaccct tagcttctcg cctatttgat ggcgggggag
     4681 ttggttcacc cataatcgct gtgcgttcaa gctcaagcca agcatattat agtggggaag
     4741 tgtttcttcc accggtaatt caagcaggct aattcgctga tgatttggct gccaagcgga
     4801 aaatgccgag ctgtgccaaa ccgctgaaag ggtatcaaat gcggttactt tgccgttttc
     4861 caacagcaca agatgatctg ccaatcgaac tacttcctct aaactgtggc tgacatacag
     4921 aatcggtatt tcaagccgag cggataattt atctaaatag tccagtagct cttgcttacg
     4981 agggagatcg agggcagata atggttcgtc catcagcaaa atattcggtg agcttaataa
     5041 cgcccgccca atcgccacac gttgtttttc gccaccggaa aggcttgccg gatagcgatt
     5101 aagcaaaggg gcaatgccta acagttccac aatttgcaaa aaatccgcag aatccgaccg
     5161 cttgtagcca tattttaagt ttttttccac cgaataatga gggaaaaggc gatgctcttg
     5221 aaacacatag ccaatgttgc gtttttcagg tggtaaattg atgccgtttt ggctgtcaaa
     5281 cagcacctga ccgtttaatt cgataaagcc ggcttgagcg gttgaaagcc ccgcaattaa
     5341 attaatcagg ctggatttac cggcaccgga acgcccgaaa atagcggtga ttcctttatt
     5401 cggcaaatcg agattgacat tgagcgtcag attgccgagt tgctgaagaa gtttaagttt
     5461 gagcatagcg tttttgcctt tctgccagcc attccgaaca gaacagggca atgagtgaaa
     5521 tcagaatcgc caccaagcac aaacgggcgg cagccatttc gccatcgggg gtttcaataa
     5581 aggtgaaaag ggcggcagga atggtttggg tttggttggg aatgttggag acaaaggtga
     5641 tggttgcccc aaactccccc aaagagcggg caaaacccag cacgccaccg gcaataatgc
     5701 ctgaaaaaga gagcggtaaa gtgagcgtga aaaacacttt taacggtatt gctccaagcg
     5761 ttctggcggc ttgctccaat ttaggatcaa ctgcctcaaa ggctaaacgg atagaacgca
     5821 ccattagcgg aaacgccatc accattgagg caagcactgc tcctttccac gaaaaactca
     5881 agctgaaatg aaaccattcc cacaaatatt gcccgattac ccctcgtttc gccatcgaaa
     5941 taagcaataa atagccaatg acaaccggcg gtaacaccag agggagatgc ataataccat
     6001 tgagcagatt ttttccccaa aactgtttgc gggcaagcag ccacgccacc cacacggcaa
     6061 gcggtaatgc aagcactaca gcaatggagg caacttttag gcttagaaca atcgcattga
     6121 gttcttgtgg ggtgaaatta agcataatct aaaactattt ggttataagc ttaccctcgc
     6181 cccttgtggg agagggatag atttttcttc gttcagaaga aaaatcaggg agagggggaa
     6241 tattttaaac gctatttgcc ctctctctga aaaatatgtc tgaacgacat atttttctgt
     6301 ctctctccca caaggggaga gagtaaattt aatttacagg ataaaaccca gctgcctcaa
     6361 atttcgcttt tgctttcggg gttttgagaa aatctaaaaa tgtggcggca gaggcttttt
     6421 cactgactgc cgcagcaggg taaacaattt cgccgtagct ttccggtggg aaaacggcaa
     6481 ccactttgac tttattcgac actttagcat cggtggaata gacaatccca agtggggatt
     6541 cgcctcgctc gacaaaagag agggcatctc gtacattttt tgccctcgct aaacgaggtt
     6601 caacactttc ccataattgg taatgactaa gggctttttt ggcatatttg ccggcaggaa
     6661 cgtggtttgg gtctcccacc gataaatagc tgtttgctaa ttctttggca aaatcgaccg
     6721 cttgtatcgc ttttggctca atgttacttt cggtaggtgc aattaatact aactcgtttc
     6781 tgactaaatt gcggcgatgt ttaactttct caggttgttt ttcggcaaca taatccatcc
     6841 acttttggtc ggcggaaata aaaatatctg ccggtgcatc ttgctcaatc tgctttgcta
     6901 ataccgatga tgaagcgaag gagaacgtga ttttatcctg tggataggct ttttcaaaat
     6961 cctgctgaat atcttgtaac acatttgtca ttgaagcggc agcaaacacg gtaatctctt
     7021 gtgaaaaggc tgtgcctgat aacgttaatg ccattgtaat tgctagtttt tttaatgctt
     7081 tcattttcat aacctcacaa ttagttaaga acgcagccca acccctcgtt gaattaagga
     7141 ataggcaata atatacaagc cgatgcaaag tgaagtaagc actgcaaaag tataacctaa
     7201 cggcacatcg ctgataccga gaaagccata tcttaagccg ttaatcatat aaacgatcgg
     7261 gttgaattta gacaccgttt gccaaaattc aggcagtaat gaaatagagt aaaatacgcc
     7321 gcctaagtaa gttaagggag taagcacaaa ggttggaatc agccccacat catcaaagga
     7381 gcgggcgaac accgcattaa ttacgccacc taacgcaaag gcaatgattg tcagcaacag
     7441 ggttaagacg ataatcgcaa ccgagtagat ttcaaacgag acaaacacca ttgccacgca
     7501 cattactaag gttgcggcta aacctgcacg caaaatactg ccggtgacat aaccccaaat
     7561 aatattatgg gtagagagtg gcgaaatcag catctcttca aaatctcggg taaatttact
     7621 caagaaaaat gaagaggcgg tattcacata agaggcggtg atggcggtca tcataattaa
     7681 gccgggtgca ataaattggg tgtaacccac gccattcatt tccccgattc gcccaccaat
     7741 cagcgtgccg aagattaaaa aatagagcgt ggtagtaatc accggtggca ctaaagtttg
     7801 tcgccaaatc cgcaaaatgc ggcggcactc tttgtaagct aaggtataaa atccgattaa
     7861 attcatttta ctgagccata ttgataaata gttcttccaa gcggtttgat ttgtttcgca
     7921 tacttagcac ctcagcccct tgggcggaaa tttgcgaaaa cagattggtt agcccttgct
     7981 ggcgttttac attcacttca agggtgtttt catcaagcca tttatgcggg taattttgaa
     8041 tcacaagcgg ttgattttgc tcagaatttt gcaaatctaa cacaaatacc tcactttcca
     8101 atttggcaag caaggctttc attgaggtgt tttcaattaa ttcgccgtgt tgaataatgc
     8161 cgatgtgacg gcatagggtt tccgcctctt ctaaatagtg ggtagtgaga ataatagttg
     8221 tgccttgatt gtttagatcc cgcaagaaat cccacaatga gcggcggagt tcaatatcca
     8281 cccctgcggt aggttcatct aaaatcagta gttttggatt gtgcattaag gctcgggcaa
     8341 tcatcacccg acgtttcatt ccaccagaaa gctcacgggt gaggtgggtg cgtttttccc
     8401 ataggtcgag caatttcagc cacttttcgg cacgtactaa ggcttcactg cgaggaatgc
     8461 cgtaaaaccc ggcttgttgc actagcacat caatcacttt ttcaaactga ttgaaattaa
     8521 actcttgtgg cactaagccg atttgatgct ttaattcgac tttttgggtg tctaaatcat
     8581 agccaaacac tttcacgctg ccgctggttt tatttaccag tgagctgata atgccaatag
     8641 tagtagattt acctgccccg ttatgcccaa gtagggcata gaaatcacct tgctcgacca
     8701 caagattaat gcctttaacg gcttttacac ctgttgggta ggtttttacc aaatcaatta
     8761 attctaatgc tttcatttgt tttactcagt ttccgccacc gctcgaatgg tcgattcatc
     8821 aatttgtgca tcaaaagcgt tgcgaagtaa cattaatttt tcatcgttaa gcagagctga
     8881 ttttgctgcc tcagttaatt gtttgaaaat ggctcgccga atttcaagcg gagtttgctg
     8941 ttcgctattg tcaccaatgg tcaattcgta tgaatagcct ttttcggcaa gggcagcttc
     9001 taaattttta cgtgattccg gattatctaa gtgagccata ttcggcttta acaccaatgc
     9061 gaggtgctgt tcattttgtt ccgctaaata gctatttaag gcgatctgac gggaaaatcc
     9121 gcctaaattg agtgagttgg cgatgtcaca ccatttatcc tgctgacaag ataaatgaat
     9181 ggtttttgcc actaattcag gggtgcgttc ttgcaaaatc gcttgtttaa tatcagaagg
     9241 tttggcactg tctgcttgat tttctaattc aggattgagc cacgtccagc gataatcttc
     9301 atcttccaca cttttagggg cggattcggt tttctttgaa acttgcagta cggctttgtg
     9361 ctgattttcc gccaagctga taaaccgctc ttgcaatgaa gcggtctgat ttgccgattt
     9421 ttttgcaata acttgagggg cttttagctc aggctttttt ttttcggttt gagctaaatt
     9481 tgcctgctgt gcttgtagct ttttgcgggc ttcgagggct gccattgccg gtgaaagagt
     9541 cgcaggagca gacggcgaaa tagcggtatc tactgcctgt ggcggttgag caatgctttc
     9601 aaccgctgtg gtagtattgg caacagtaac cgttttttgc tgattttgct caaaattttc
     9661 tcttagctgg ctaatttgat tttgtggttt tgctgtcgta accgctgaaa ccgaatggtt
     9721 tggttgtgta accttttcca ctgcaactgt tgctattttt tctgcctgtt tagggtggaa
     9781 agccaacgca cgcaaaatcg ccatttcaac accggcacgt tgctccggtg caaaaggcaa
     9841 ctctttttta ctgttgagga ttaattgata gaaaaattgc acgtcttcgg gcggaatttg
     9901 ttttgccaga aaatgcacta atgtttcttc ggttgtaggt gttttcacta attgcaacat
     9961 tgcaattttg tgtaacactt ctgccacatc gcttaataat tgttgccaat caacgccttt
    10021 cgctgcaatt tgctcgatga tcgccattgc tttttcaccg tcggcttggg cggttgcttg
    10081 cactaattct agtggttgat tatcgtcaat caaccctagc atttggctga ctatcgcaag
    10141 cgtaatattg gcattactca ttgcaatggc ttgatcggtg aggctgagag agtctcggat
    10201 actaccttgt gctgcttttg ccaacttttc tagtgccaaa ggctcaaacg gaatgttctc
    10261 tgcatttaga ataaattcaa gatgacgggc aatttgcgat tgctctaatg cccgcagatg
    10321 aaattgcata cagcgagaga ggatcgtaat cggcagtttt tgcggatcag tggtagccag
    10381 caagaatttg acatattcag gcggctcttc aagggttttt agtaaggcgt tgaaactatg
    10441 acgagagagc atatgcactt cgtcaattaa ataaacctta aaacgcccaa cggtgggttt
    10501 gtattgaacg ttatcaagta gctcacgggt gtcttccact ttagtacgag aagcagcatc
    10561 aatttcaatg agatcgataa aatgcccttc ttcaatcgct ttacaattcg cacattcacc
    10621 gcaaggctcg gcggtgatcc cgtttacaca gtttaagcct ttggcgaata aacgggcaat
    10681 agaggtttta cccacaccac gagtgcctga aaacaggtaa gcgtggtgca gtctatcttc
    10741 tcttaagctg ttttcaagag cagataaaac gtgttgctga ccaactactt ccgagaagcg
    10801 ttgcggtctc catttacggg ctaaaacttg ataactcatt gatttttcta ttcaatttgg
    10861 aaatcacaag cggtcatctt tccgaaaaat tttgcaaaat tttagcaaaa agccaccgct
    10921 tgttccccat taatgacctt caaagctgac taggctaaag gatttaaccc cttctttttc
    10981 caaacgctct ttaccaccta actcaggcag ccaaatcaca aaggcagcgt gttctacgtt
    11041 accacctaag cgacgaatta gttttgcagt tgcatcaata gtaccaccgg ttgcgagtaa
    11101 atcgtcgatg accaatacat tatcattagc actcactgcg tctttatgaa tttctagcgt
    11161 gtcttcacca tattcaagcg tgtaagattg cgaaatcact tcacgtggta attttttcgg
    11221 tttacgaacc aacacaaaag gcacgcctaa cgctaatgca acaggggcac caaaaataaa
    11281 cccgcgagat tctgtgccga caattttagt aatacctttg tctttaaatt ctgcaacgat
    11341 ggcatcaatg gtggcttgga atgcagttgg cacttctaaa agtgaagtga tatcacggaa
    11401 gataatccct gctttcggat aatctggaat ggatttgata gaagatttaa ttaaatctaa
    11461 ttggttcatt gtttgaccta cgtgtaataa aaaaataact ggaaaactct atagaaaaac
    11521 agcagaaatt tcaaggagaa attgataacc ttacgtttga tagtacagct tacttttcag
    11581 tttccttttc cctatattat agataaatat cttccctgtt tcgtctggtt ttaagcaaac
    11641 gtaaaatcca aacatactgc tcggggtttt tctccacaaa atattcaatt actcggttca
    11701 tttctcgggc ggattgaatt gggtctcctg aaaattcaag cggtggcaaa atttccattt
    11761 catattttgc tttttccgca ttataaatcg agaacattgg gatcacttcc gcatttgcca
    11821 ctcttgccat tttatttaag cccggcaaag tggctttttc ggtggcaaaa aagtcggcat
    11881 acacacttag ctcttcgccg aaatcttcat cgggcagaaa ataaccaaca tcacctttac
    11941 gcacatcggc taaaaacgct ttaatcccat tttgacgagt gtgcattcgc ccacctaaac
    12001 gctcacgggt aatattccac agccagtcca ccaacgcatt acggtgtgga ttgtacattg
    12061 atgtcatcgg ataaccgagc gagaacatcg ccacccccgc catatcaatc gaccaagtat
    12121 gtggcactaa cataatcacg tttttaccgc tctctttggc tttcaccaca ttttcaaagc
    12181 cggtaaattc acaccgtttt tgtaaataag aggccgggcg gattgcagtt tcgccaatcg
    12241 ccaacatggt ttgtgctacc gtgataaaca ttttctcgac cacttcttca cgctttttct
    12301 cactccaatc gggaaaacag taacgcaaat tcactttagc acggtggtag ccttttttat
    12361 ttttctgctt gagatagcga tacgccatct tacccacaaa agcggataat ttatccctaa
    12421 ttcgcaccgg cacataggct aaaatcacta atcctaatac acctaaccat acgccccaat
    12481 atttcgggtg tagaaaagac cataggaatt tgtgcgtata gccgtcttgg gcggtaattc
    12541 gtgtcattct ataattcctc attatttgtc actttctttg cttcgccaaa gaaagtaacc
    12601 aaagaaaggc aaccctactt caccgctatc ttcgcttggt ttgaatttgc ttaacgaaaa
    12661 aattccaaac tcgccgcttc gctgctcaaa caaggaattt ttcctacaaa ttcaaagtcg
    12721 ttcgggcggt tcagaaggga acccggcaga gcatcatttt gcaaaatttt ccaaaaaaat
    12781 caccgcttgt atggtcggat cgggttccct tctgagttgc ccgaacgact tgaaattttt
    12841 aggaaaataa ctcgagcgag agcgaagcga acatcagggt tatttttcgt taagaaaatt
    12901 tcaaccaagt gaggatagca acaaagcagg gtgtgctttc ttttggttac ttttctttgc
    12961 acaagcaaag aaaagtgaca taacacatca tctcttatca ataatattct tcaccgccaa
    13021 tatcacccca agtccaataa aagcccccgg aggtaaaatt gccagtagta aacctgaatc
    13081 aatatgcaat acatcaatgc gtagggcttt tgcccaatcg ccaaggagta gatctaagcc
    13141 tgaaaacagc gtgccgttgc caataatttc acgcaacgcg cctagcacca caaggctaaa
    13201 agtcattccc agccccattg aaaagccgtc aaaagccgag aatttgacct cattttttga
    13261 ggcataggct tctgctcgtc caatcacgat acagttggtt acaatcagcg gaataaaaat
    13321 cccgagcgat tggtaaacag ggaaagcaaa agcattcatt aaaagctgta ctgccgttac
    13381 caccgttgca attaccatca cataaatcgg aatccgaata tcgtgtggag tgattttccg
    13441 aaacagggaa accgtgatat tggtgcaaat tagcacaaac attgttgcca agcctagtcc
    13501 aagtgcattg gttacgctgt ttgaaaccgc cagtagtggg caaagcccta ataattgcac
    13561 caaagcacca ttatttttcc acacaccatc agcgaaaatc gttttccaaa cgctggattg
    13621 tttcggggca acgtcaatat tcgtcacagg gatttgttgt tctctttcca tttctccccc
    13681 tatttgcacg ctttaaattg attaaacatt gtcgggtttt gagccagctc tgtcaccacc
    13741 catttcgcac tttggcggat atgattgacc accgcacgag gtgtaatagt tgcaccggta
    13801 aattggtcga acttgccgcc atcttttttt acattccaat ccgcttcgtt ttctaaacta
    13861 aaaagttgat tggtaaaaga taagatccaa tccgacactc gggtctcaat tttatctccc
    13921 agccccggag tttctttatg ctcaagggtg cgaacgccta aaatgttgcc gttcggctca
    13981 atccccatca atagcacaat atcgccggaa tagccgtccg gagccgttcc ttgaactagg
    14041 taagcggtca gattttccga tttttttgca acataaatac ggttcaaata aggggcattt
    14101 tcgagctgaa ccagtttgca agtcgccaac acatcattat caaaatggct tttcggcaca
    14161 acctcttcca ataatttgcg ttgttgcatt gcggttacat catcaatctt gcctttggta
    14221 agcaggtaca caccggttga aacagcggtg caaagcaagg caataaagcc taaaattaag
    14281 gcgtaattta aggtaatttt tgaggtgttc attatctgtt atccaatttt gtgccgtata
    14341 atctcggctg cgtataatgg tcgattaacg gtacgcaaat gtttgccaat aacactgaaa
    14401 atgcaatcgc atcagggtaa tttccgtagt agcggattag ataaaccaat aatcccacca
    14461 agccaccgaa aatcagtttt cctcttgggg taatggaggc tgttaccggg tcggtcgcaa
    14521 taaaaaatgc cccgaacatc atcgcaccgc taaagaaatg gctcacaaaa tgcaagtgcg
    14581 attgttggct aaacagctcg gtgaatccac taaaaaaggc aaaagttgcc aacattgcta
    14641 ccggaatttg ccaatggata atccgtttat aaatcaacac caaaccgccg aataagaacg
    14701 caaggttcag ttgtagccaa ccggtcgcaa acagcccgtt gaaaatcggc gtattcatta
    14761 ccgcgtcaaa acctgatttt gcaaggctgc ttttcatact atcaagcggg gtagcttgtg
    14821 caatgccatc aacactatta actagctgat gaatactaaa accatcgcta gttaccccgt
    14881 aaaaaatcaa cgaaatcgca tcacgaaatg tcggtggttc acttaataac tcaatcggca
    14941 ctatccacgc cgtcatttgc accgggaaag aaaccaacaa caacgcatag ccaaccattg
    15001 ccgggttaaa tagattctgc cccaagccac cataactgtg ttttgccaat aataacgcca
    15061 caatcacgcc aatcaacaca agccaataag gagcataagg cggaatcgac atcgccaaaa
    15121 tcaaggcggt taaaatacct gataagtcag ccaaatagaa agcggttgtt tttttgcgta
    15181 attttgcaat cccgatttca atcacaatcg caaggctaac ggcaagcaac gtttgaatca
    15241 gcacaccata gccgaaataa taaagctgaa ccccaaaagc aggtaacatc atcgcaatca
    15301 cccacagcat aaaattcgca gtgagattgc tcgaatgagt gtggggggaa ctgaccattt
    15361 taaacatcta taaaaccttt ttagtaaaaa attgcaaaaa aatgaccgct tattaaagtc
    15421 tcggcaaatt caaattaaag cgtattgcca gcaggcggat aataattacg gtgaacacgg
    15481 tggcaaggta aacccaatcg ctttcgagcc caactgagtt tgcagccaca aaaatcacac
    15541 caccgataag gctggcggtc acatacactt ctttttgcaa aatgatcggc acttcgttgc
    15601 gtaaaatatc acggattaag ccaccaaaac agcctgtcac accgcccaga gccacacaga
    15661 tcagtgggtg caagccgaaa tccaagcctt tttgcacgcc aatcacggta aatacgccaa
    15721 gcccgatggc atcaaacacc agcaagccgg tttgccaact tttgcgggaa atttggttgc
    15781 ggaaaatagc ggtaatcacc actgcaaggg taatcatcag cacatagatc ggttgtttca
    15841 tccaaaacac cggcgtggag ccaatcatca tatcccttag cgtaccgccc ccgaccccgg
    15901 tcacaaacgc taaaataaac ataccgaaaa tgtccatttt gtgctggcgg gcagcaattg
    15961 cccccgaaat cgcaaacacg atagtgccga ttaagtcctg aataaacagg aacgaccacg
    16021 gcaatgccgg aattagctcg ctaaacattg ttgcttttct cctgctgagc ggcttttttc
    16081 gctttagctc tggcgatggc ggccgcaacg gcggctttgc gtgggtcttc gctttccgtt
    16141 ttgggcgaat ggttattcgc ccctacagat ttatccgatg tagtttcgtt cattgattgt
    16201 aggggcaaat cattatttac cccaatcaca gcattggcaa tatcttccgg tttttcgacc
    16261 gcttgttgag cttgtttttt cgctttagct ctagcgatag ctgctgcaac ggcggctttg
    16321 cgtgggtctt cgctttctgt ttcgggcgaa tggttattcg cccctacaga tttatccgat
    16381 accgtttcgt tcattgattg taggggcaaa tcattattta ccccaatcac ggcattggta
    16441 atattttctg atttttcgac cgcttgctgt gcctgttttt tggctttggc tcgggcaagg
    16501 gcagccgcaa cggcggcttt gcgtgggtct tcgctttctg cttcgggcga atagttattc
    16561 gcccctacag atttatccga tgcagtttcg ttcattgatt gtagaggcaa atcattattt
    16621 gccccaatca aggcatttgt aacattttcc gatttttcga ccgcttgttc tgcctgtttg
    16681 gctaaacgtc tggctctgcg ttgtgccatt aaatcgctgt tatcaggctc gccgttaggt
    16741 tttacctgta cttctgccgg tatttcttgg actgtttcaa ccgctttttt cgctttcagg
    16801 cgttcaagag ccgcttttac aggatcaaca ccacctgcat ttgccacttc ttcacggcgt
    16861 ttttccgccg cttggctaat gcgagcagtt ctggcatctc gttctttttg taagcgagct
    16921 tctctcgcct caaagcggat tttagcctct tccgctttgc gggctttttc ctcaatttcc
    16981 tcgatttttg ctttttcttg gcggaaatat tggattaacg gaatgtagct tgggcaaacg
    17041 taagcacaaa cgccacactc aatgcaggca tctaaatggt attctttcga tttatcgtga
    17101 tcttctgcac gggcaaacca ataaagttgc tgtggcaata accccaccgg gcaagcatcg
    17161 gaacagcttg aacagcggat acaactacgc tccggttcag gtggtgcata ttcaaaatga
    17221 tcaggggcaa tcaagcagtt cgcagttttg gtaatcgggg cttgcaatgc aggcaaaata
    17281 aagcccatca tcggtccgcc taaaaacacc ggaaagcgtt tatcggcttg ataatctacc
    17341 tgctccaaca agtgctgaat tggcgtgcct aatcttgccc acacgttccc cttgttgcga
    17401 attttatcgc ctgtcagcgt cactacccgt tcaatcaaag gttcatcatc aataattgcc
    17461 cgtttaaccg caaacgccgt gccgacattg tgcatcacaa tgcccatttc aatagtgcgt
    17521 ttgccagccg gaatctcaag tccggtcaac acttgaatca gctgatcaga agctccggag
    17581 ggatatttag tcgggatcgc ccgcacaaac atatcgttcg agccttttaa agcggtttct
    17641 aaagcttgaa tagcgtgcgg tttgttgtct tcaatcgcaa tcaccacttc ttccgggcga
    17701 agcacataac gcagaatgcg aataccttcg ataagatccg cagtgaaatc ttgcattaag
    17761 cgatcgtcac aggtgatgta aggctcacat tctgccccgt taatcaccag taatttacag
    17821 cgtttatccg ccaaacttaa ttttgttgcg gttgggaata ccgcaccgcc taaaccggca
    17881 atgccatatt ggtaaacttt ttggataatt tgatcgcttg ttaggcttaa aaaatcctca
    17941 atcggctggc gttccaccca tttatcttta ccatcggttt caataatcac cgttatttcg
    18001 ggcaaacctg aggcgtgagc ggaaacataa ggctcaatcc caatcacccg cccggaggtt
    18061 gggctgtgta cgggcagttg acggaagtga tcgcctttcg tgagcggctg ccctttcaat
    18121 accacatcgc cgactttgac taataattcc cctgcccagc cagaatgttg aaccagtggc
    18181 acatagaaaa acttcggtaa atttaaggtg cgaattggct tgctgtttga ttgggattta
    18241 ttttccatcg ggtgaatacc gcccgggaaa tcccacagtt tacccgtttc tttattttgg
    18301 cggattcgct caatcactaa attaggattg ctcatttttg cctccgccgg taactaattt
    18361 tctctgcaat tcagtggtat tcacaatcgg aataattaaa tcttggtcaa atttccagtt
    18421 ccaagattgg gttgtcggtt taattggtcg catttcaata cagttggtcg ggcaaggggc
    18481 gacacaaagt tcacagccgg tgcaaagatc cggaataatg gtgtgcattg ctttattcgt
    18541 gccgataatc gcatcaaccg ggcaagcctg aatgcactta gtacagccaa tgcagagatc
    18601 ttcaatcaca aaagccactt tcatctcagg ctctgccata ccttccattg gcggcacttc
    18661 taccccaagc aattcggcaa gattcaccac taaaggttgt ccacccggca cacatttagt
    18721 gatcacatca ccattagcaa tcgcctcagc ataaggctta cagcccgggt agccacattg
    18781 accgcattgg ctttgtggta aaagggcatc aatttgatcg acaatcgggt cggattcaac
    18841 tttcagttta atcgaggaat agcctaaaac cgccccgaaa atcagtgcga tcacagcaat
    18901 agcgataaga atataagcga taattggcaa atcaagcatt agagtttcac caatcctgta
    18961 aagcccataa aggcaagcga catcaagcct gcggtaatca gagcaattga tgctccttgg
    19021 aacggacgag gcacatcagc ggcagccaaa cgctcacgca gagccgcaaa taaaactaac
    19081 accagcgaga aaccggcagc ggctccaaaa ccataaagaa cagattccac caagttattg
    19141 gctaaattca cgtttaataa tgccacccct aatacggcac agttggtggt aatcagcggt
    19201 aaatagatcc caagcaagcg ataaagtgtc gggctggttt tatgcacaat catttccgtt
    19261 aattgcacga tcaccgcaat cactaaaata aacaccaagg tacgcaaaaa ttgagcgttt
    19321 aacggctcaa gcaaataggt ttccatcaaa taagcagaga gcgaggcaac cgtcagcaca
    19381 aaggttgtcg ccaaccccat accaatagca gtttccacct ttttcgacac tcccataaac
    19441 ggacaaagcc ctagaaattt aactaagaca aagttattaa taagggcggt gctgatgacc
    19501 aacagaatat aatcgaccat aaattccaca aaattaaata tacaagcggt caaaaacgca
    19561 ttttattttg caaaaaacag agaaaatctg accgtttgtt aaagcatctc attaaaaata
    19621 aacgttatat tatctcttgt tttcggctca ttcacaataa gaaatcggag gtacttctag
    19681 taaacatacc atatcaaata tgatcttgtt acctttgttt ctatctctgg tagaatggag
    19741 aatgtgggga ctaagctata cagcatgaaa ggtgaaagga gcttgatttt ctaagttaat
    19801 cctaaaaagt ctcactcct
//
LOCUS       DANLXB010000021        19693 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLXB010000021 DANLXB010000000
VERSION     DANLXB010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19693
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            37..417
                     /locus_tag="PXD41_000496"
     CDS             37..417
                     /locus_tag="PXD41_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288061.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
     gene            complement(470..1987)
                     /locus_tag="PXD41_000497"
     CDS             complement(470..1987)
                     /locus_tag="PXD41_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL6288062.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFVLPLIFVLIS
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRVPTAPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(1998..2315)
                     /locus_tag="PXD41_000498"
     CDS             complement(1998..2315)
                     /locus_tag="PXD41_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6288063.1"
                     /translation="MKSDTTKPKMTRVITVLKITLMIIGIILLLLVVGWLAMTYFPST
                     NFQAWFYETRYAWLGWRFVLYVAIWLLMVQLNRKGQMPLKARLMILSVIPIIEGLNLL
                     YLL"
     gene            complement(2305..2733)
                     /locus_tag="PXD41_000499"
     CDS             complement(2305..2733)
                     /locus_tag="PXD41_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288064.1"
                     /translation="MNKQHYRLFNAGPQKSSLGVVSPAVETQLLGFCEQIRQLIGVGK
                     QITLFPHRVVQNHWAIELSGEQGSVHLLLNVTGRSLLPTSNNSEWSARLIIEIADHVD
                     AYWFSAFLTQYLGLKSNLLPLSTSIADNSVYNEVIDNNEV"
     gene            complement(2733..5570)
                     /locus_tag="PXD41_000500"
     CDS             complement(2733..5570)
                     /locus_tag="PXD41_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL6288065.1"
                     /translation="MSFLSEVFSSFKPTKAGVISSEPNENTGESDIIQNKMSEVNNEV
                     QQLKRSGKLTQSQHHRRLYSQEPSFIDHLPWGEYLNEHGVILLDDARSVGAVFDIKPI
                     GTAGRSIEFLSRIRNLVKDALQDSFDELDVNPYVVQFYCQDSDDLQPYIEQLRNYISP
                     IAKNSAFSEEWLRVQAKHFKDIGKPEGLFIDERVTNTAWSGRIRSTKMVIYRYVDKSN
                     DTNENLIVEQLNNACSRINGALTTAGLQLQRLDGEQFRQWLLRWFNPNPSINFEGLSN
                     NDCYHLFGKQTSNDGLPELAFNDFSEDLFYSQPKNEGNYWYFDDQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQSYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDIKNALEALSHDEHTREERRTRLAEMAESLEMFCTGVNGQFFNREGAIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERKQLMMQHGYTELDAALEVAARIDKARGIH"
     gene            complement(5573..5971)
                     /locus_tag="PXD41_000501"
     CDS             complement(5573..5971)
                     /locus_tag="PXD41_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL6288066.1"
                     /translation="MKHLFCIMISALLITGCTTSTEELLPTNGSTMRDIWDKGASNND
                     LHLYRSQQGRTLDPVDYIPNSEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            complement(5984..7438)
                     /locus_tag="PXD41_000502"
     CDS             complement(5984..7438)
                     /locus_tag="PXD41_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288067.1"
                     /translation="MKANKALFVILGIVFILVGGIVYALFGRSESVPQPTQQEILDIS
                     IKDLTPEQVRTMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     NDAVNNETRKLQEQIADLKMQLFDMATLVNNKPTTQESTPQVEAQPNTVPNKGFGTAG
                     DKLPIGGATMSNVDTSGMYWVEPSDQISLDASGKPVSGNTVATKFGFPKDFNGGQSAG
                     NNEKKGLPFFPETDTVTSSQGTAGNARGKNQMTSVYTIPSNSTFLDSVAMTGLIGRIP
                     IDNRVSDAYPFKVLIGRENLIANGIELPDVDGAIVSGTATGDWTLSCVRGSVKSMTFV
                     FNDGRIVSTSNKGNGEEIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGSSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVSIHIEKEIEIDYNAQGRKVKYGSKSTNSQLD"
     gene            complement(7450..8334)
                     /locus_tag="PXD41_000503"
     CDS             complement(7450..8334)
                     /locus_tag="PXD41_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288068.1"
                     /translation="MKRLPILLVSLLIGFSGSSLADVLMKWERKPLPVALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVTTGEIFLFDLTAA
                     SKVANPEEAIRVVFDGTVEKQSFSSNRDDESSDLPIANSRPQLPVPAALTRYAAQSLY
                     APLRTVEPLDGVRRVAHRLPKKITKLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNT
                     QITLDPRELQGQFYAATFQHNWLGGYGENEDTTTLYLVTEGYANNALIPETRPVKLVS
                     KKVKRTTKVETKPAQSAK"
     gene            complement(8334..8978)
                     /locus_tag="PXD41_000504"
     CDS             complement(8334..8978)
                     /locus_tag="PXD41_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288069.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITTLKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTIFSEDSWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDVDSAQNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            complement(8982..9347)
                     /locus_tag="PXD41_000505"
     CDS             complement(8982..9347)
                     /locus_tag="PXD41_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL6288070.1"
                     /translation="MSEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGIVAAVKRGKPEAYLNRLVEKKMDDLFN
                     GHKFIKREGFWSIRRYRRK"
     gene            complement(9370..9759)
                     /locus_tag="PXD41_000506"
     CDS             complement(9370..9759)
                     /locus_tag="PXD41_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL6288071.1"
                     /translation="MNRIKSLTKHLHSRYLAVMLFFWGSLQNAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEIIWIVLKGLVTLGAVILAAVAILTVVKALIGIYNEATSENGKKGWG
                     HFILALIIGFIVIFFCLWLVKLAVGLF"
     gene            complement(9774..10007)
                     /locus_tag="PXD41_000507"
     CDS             complement(9774..10007)
                     /locus_tag="PXD41_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288072.1"
                     /translation="MSYSPANAFSVASGIDPFRLKIMIAIIFLSLLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLACVTYFFIY"
     gene            complement(10007..10333)
                     /locus_tag="PXD41_000508"
     CDS             complement(10007..10333)
                     /locus_tag="PXD41_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL6288073.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPALASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHSDIETVKKGIQQYINPSRALPRDPNVLRTLSDDY
                     SKLRGQ"
     gene            10520..10903
                     /locus_tag="PXD41_000509"
     CDS             10520..10903
                     /locus_tag="PXD41_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288074.1"
                     /translation="MRYQMRYLALFLVVFPYVAHSLPSAQKVGNICHAENAQYNYGGL
                     WELSLRGKLICNYWQFLGDDERKKIELQLDEYGEFPIWNTSEQISEQIIEDDEYPQYW
                     EVEDWEDSDWDTESENEDTEATTEE"
     gene            complement(10935..11630)
                     /locus_tag="PXD41_000510"
     CDS             complement(10935..11630)
                     /locus_tag="PXD41_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL6288075.1"
                     /translation="MSEETKARRKSGLINLIFGKINMSLAAIAVSLIFSIILEWIGIA
                     FWWPQEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATSIIENVYNWLFVYTGVKE
                     WLTSPGNGSMEQWVHHYGRAYIESVIYVVITFIIRLIIIVFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVLYLSIPFSIHPNIILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(11627..11980)
                     /locus_tag="PXD41_000511"
     CDS             complement(11627..11980)
                     /locus_tag="PXD41_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6288076.1"
                     /translation="MSSAKMREEKRTNLLDLPNKYRNFNGEFSASCGLDNAEELLIHS
                     QSYFIEWFEQGYSFHQFAEKFADQGLSLWSADEVSMRHSDKSKDIFAFYLAFDNNPSG
                     YILVQCQLDREDSLQ"
     gene            complement(11973..14174)
                     /gene="traD"
                     /locus_tag="PXD41_000512"
     CDS             complement(11973..14174)
                     /gene="traD"
                     /locus_tag="PXD41_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL6288077.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAAVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHRNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTHLTSKDSRWNLVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTADERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNDGLPGAFKEKSKPVKINLHCD
                     EFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALMDGSKLWKIRMPLPAVDKDDMMHQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYKTQIDHQVDNFGIDEPYDIDEEENDE"
     gene            complement(14174..14680)
                     /locus_tag="PXD41_000513"
     CDS             complement(14174..14680)
                     /locus_tag="PXD41_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6288078.1"
                     /translation="MQNKVKVLLFSLYVSHFSWADLTVIADFGGESAVRFYESLQPEH
                     DENAPNYPNSISASVSEADILPIVSHKLSPGTIKEKPFDLTGMQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVQTLSELNQLRDIVPELRILPTPGDDLAERIGIAHYPVL
                     ITESGVSQ"
     gene            complement(14683..15453)
                     /locus_tag="PXD41_000514"
     CDS             complement(14683..15453)
                     /locus_tag="PXD41_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL6288079.1"
                     /translation="MDITRVLVIVAVFLSNISISQAKPFNGFGSEIDSYIRMAAQRYQ
                     VSEAMLRGFVKMEDGWYGNISPTGATGVGQFTMGTWNWLSETERGKQLGMKLITAKNR
                     GSYADPRRDKYTNTLATALLARWHIEQFQLRNIPITDENLYMAHNIGLDGLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMTVSKQGHIHTGVAAFVY
                     PTSQMGKSVKWVEPDNKMIWVEPKNAMVWVEPQNTLQR"
     gene            complement(15432..16205)
                     /locus_tag="PXD41_000515"
     CDS             complement(15432..16205)
                     /locus_tag="PXD41_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288080.1"
                     /translation="MREISMKFNLCRKAIPLAVLPLLLSFALPTLAQNMQTETVSSSQ
                     STLQKQSQHQQSQLSDSLKQAKEWGLTVEEWSRYTELMKGERGMWSPNLDPLTALGIE
                     ARTAEEREKYARMLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSVGR
                     VVYFTRFDNCDSCKSDLGKILSYANNQTPLDIYIVGQNISDNDIRKWAADNNIDPIKV
                     SKRLITLNHDKGYWLRYSLGKMPAAYQIKQDGEWTSLVY"
     gene            complement(16205..16834)
                     /locus_tag="PXD41_000516"
     CDS             complement(16205..16834)
                     /locus_tag="PXD41_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288081.1"
                     /translation="MKTKISLMTVFMLGLSGCVHQQDTAQNSDEITPMPDSLLTPQMQ
                     QLPPQDRIVSKDIYQEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVSNPKN
                     RFTANVQQGLRSTLTNTGLDLCYPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDISRTICFKARESSFQNPHKPAVAVTTTTIKTEVIEE"
     gene            complement(16993..17253)
                     /locus_tag="PXD41_000517"
     CDS             complement(16993..17253)
                     /locus_tag="PXD41_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288082.1"
                     /translation="MTFELGRVCTTRAVAECFNQNALVELLNRYCYGDWGNLCEEDKL
                     ANQEAMKYGGRIVARYDVDDESLYIITEADRSCTTILFSYEY"
     gene            complement(17366..17728)
                     /locus_tag="PXD41_000518"
     CDS             complement(17366..17728)
                     /locus_tag="PXD41_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288083.1"
                     /translation="MEDSFFDFDDISCYLGQWEAILEEYSDIVSIEDFWLVAKEFETV
                     PHFGNLYQELVISRLIQRFCTELDIEQDSDLVEFDYYINAIDTHFYINRQRICDIDDW
                     NEMLDKIRKEMTPAKLAA"
     gene            complement(17808..18215)
                     /locus_tag="PXD41_000519"
     CDS             complement(17808..18215)
                     /locus_tag="PXD41_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6288084.1"
                     /translation="MNRQGIYINGKQVFDSKGKEINSVQIINSTVQTVVGINKGYISM
                     AAGNNVLIVDGQTIALEPSPTINIEVFGNVTNLNAGSENVRVTGDAKSVSTVSGDVTV
                     DGNVTSNVKTVSADIHCKSILGKINTVSGDIYR"
     gene            complement(18241..18921)
                     /locus_tag="PXD41_000520"
     CDS             complement(18241..18921)
                     /locus_tag="PXD41_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288085.1"
                     /translation="MNSLQQFVKTLSPTVLNGRHFDGIVGDVVFVQNGYGKWLDQGFT
                     IIGFDKSIEEKDWIYLDWDCYWFGKNPAQVIPEKSWAQRSWLARAYSISLERFNSLGL
                     EREYNIVSDWDNPIYGTDIQLIEHSKEFFRWTEADDRGIFLVHNEMAFHFFKKEIKAS
                     SEPEYYQPIETFWKDATVVLNIEDLDMLERVGLEQTNTPALAKLTTFVQAARNEISNG
                     NIVFYRAF"
     gene            complement(19027..19458)
                     /locus_tag="PXD41_000521"
     CDS             complement(19027..19458)
                     /locus_tag="PXD41_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6288086.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEHKKGNPFYACRVAAL
                     VGESDSPEYRYFDMNVVGKETETLIKKCQKAVSEEKKVLVSFVMADLWFDTFTYSSDS
                     KYHKKGDTGVSLKGRLIRIKMIKIDGEIVYQEKPKADEQSE"
BASE COUNT         5850 a         4132 c         3734 g         5977 t
ORIGIN      
        1 ccaaaaacaa taacctttta tcttaggaaa gatactatga aatttatcga tttcggaaag
       61 cagctcgcta agccggttaa atttatcaaa caacgtaccg catttttacc aaaaccgcta
      121 caacaagctg tcgtttttgc ggtgattttt gcaggacttc ccttgttttt agttggattc
      181 acggttctgc gaattctcaa tggaacacca gtagaagata tttcaacaaa tgacgtagca
      241 tataatccaa accacgtcga aaacacggtt aatgaaattg aagatgatag tgaggatagt
      301 aagccggaag atttatggga tgtaattgct gatcaagacg aaaatcagct tgatggatat
      361 cgtgatggat attttggata tggactctat cagggtggct attttgtaaa aagatgagaa
      421 aatatgatta gaaattaata aggtagagat taacctctac cttattgttt tatttgttaa
      481 accctgcaga tatttcctta ccgcctttct taactaaatt accaccttga gagcctgcgg
      541 atttactatc taatgaatca gtagtaaaac cggcagctat atctcctatt tttactccag
      601 cccacgacat actgcctagc caaatcgccg gtaaaaccaa gaacatcgaa cccatcacaa
      661 aattgacgat aaaatcatct tgcgtatttt caaggaaata cggatttatt cgactatgtg
      721 cactggaatc atatagagcg gatagtagcc aagaatctaa ccatcttgct aattcccacc
      781 agaatgtcag tgataccaaa gcaaaactca caaaagttaa tgtaactaat gttttgagag
      841 aataaccact catcacaata accagcggag taatgatgat cacagccatc aacataaaag
      901 catgtaccat cggcagtgct tgtcgcattg catcgaatgc tggaaaggct gcaaagctgg
      961 cagctaagct tcccactgaa gatgttaatc gagtcgttgc atttgcaaat gtaggatcta
     1021 aattcccccc atacccggga taaactttcc ctctcgaaat atccatattc tctgctcgta
     1081 atacagtacg gagtatggat tcatccgcat tttctttgct gctaaaaaaa tcaatcactt
     1141 ttgcagagaa gttctgtttg acatcagcta ataaacgatc ttttaaacca gtattcgccg
     1201 tatcccacca ctctgcacaa tttggaaaac caccttcccc attattcggc aatccattat
     1261 cccgggaagc attgtaggga aatagactat gaggttgttg agctcgataa cggggataaa
     1321 gctcactgtt tgtcaaaaga atacgaccac ctaaccagct ggtttcacgc acctgtgccg
     1381 gagtcaatga gagctgactg ctttgaattt tctgacgtgc aggtacataa cattgttgta
     1441 caaataagcg aacctcagtc aataatgcag gattattgat tttttcatgt tggacctcaa
     1501 agcgaacttg acgtaaatcc ggtttacacg gaattgaagc tgttaatgcg tgtgtaactc
     1561 ctttgttgat ttgatggaat aatccccacc aaagcggtac tctcgcttgc tggttgccca
     1621 attcagagtt catttgatta taaccactat cctctggtgc agttggaaca cgataaccac
     1681 aggctttaga acgttctaca ttcaactcaa tattattcag gttgatcggt atcattggag
     1741 ctaagaccaa tacaacgaca aacatcgccg ggtaaaattt gaggctgagc caagtaataa
     1801 gtaaatcccc tttattacct tcgtcctcac cttgtttttt gacttccatc cacgtactga
     1861 ttaagacaaa aatgagaggc agaacaaaca accctgtttg aaccaataca gcgaaaatat
     1921 tgttgttgat gatccaagcc agtaaggtaa gaaagtattc taagtaacta tctacggtaa
     1981 aggtcatctc atcctcctta aagtagatac agtaaattaa gtccctcaat aattgggatg
     2041 acagataaaa tcattaacct ggcttttaat ggcatttgcc cttttcgatt aagttgtacc
     2101 atcaatagcc aaatagctac atataaaaca aatcgccatc ccaaccaggc atagcgggtt
     2161 tcatagaacc acgcttgaaa atttgtggaa ggaaaatagg tcattgccaa ccagccaaca
     2221 acgagtagta ataaaataat accgatgatc atcaaggtta tttttaatac agtaataacc
     2281 cttgtcattt taggctttgt tgtatcagac ttcattatta tctattacct cgttatacac
     2341 agagttatcc gcaattgatg tggataaggg taaaagatta cttttcaaac cgagatactg
     2401 agtaaggaat gccgaaaacc aataagcatc cacatgatca gctatttcaa taattaaacg
     2461 agctgaccat tcactgttat tggaagttgg tagcaaagaa cgccccgtca cattaagtaa
     2521 taagtgaaca gaaccctgct caccagaaag ttcgatagcc cagtgatttt gcacgacacg
     2581 atgagggaat aaggtaatct gtttcccaac gccgatgagt tggcgaattt gttcacaaaa
     2641 tccaagcaat tgagtttcta ccgctggaga tacaactcct aatgaggatt tttgtgggcc
     2701 tgcattaaat aaacggtaat gttgtttatt cattagtgta ttcctcttgc tttatcaatc
     2761 cgagctgcaa cctctaaagc tgcatcgagt tcggtatagc cgtgctgcat catcagttgc
     2821 ttacgttctg ctttttcatg tttttcagtc attcctaaag ctaaaaataa gctaggcggt
     2881 acaactcgga atagagcttc catattcgtt gctaatacca cgccctcggt atatttacga
     2941 tctgattttt tggcagataa caacatcgtt ttctgggcct ctgacagttt ccggaaacga
     3001 ttgatttcat caatttcact ggcagacaca ttcaacaatt cccaccattc gaccattgag
     3061 agtaatttcg ccgcttcatt cgggaagtca tccatatttt gagtagcaag ccatagccaa
     3121 atccctagtt tacgccacat ttttgagcct ttaactagga atttagctaa taatgggttg
     3181 gccgtgataa tgtgtgattc atctgttaca ttcagaatca tccgatcact gtgttggtat
     3241 ttttcaccaa gactgttgat atggttaatg agtgaaatat aggaaatggc caactctgct
     3301 tcatagcctt cccgggcaaa catagctaaa tcaactaagg ttagatcagc ctccggccaa
     3361 attgccccct ctcgattaaa aaattgccca tttacaccgg tacaaaacat ttctaatgat
     3421 tctgccattt ctgctaaacg ggtacgccgt tcttcacgag tatgctcatc atgacttaat
     3481 gcttccaaag catttttaat atcttcagtc agcgtttgtc tgccttcaga tttggtttgg
     3541 cgagctgcat ttaaaatggc acgacgaata gcagcacgat cagcacggct cattttttca
     3601 tcttctttct tttcacctcc ggtgatcatc aaacgtgccg tcagctccat ttcggccaat
     3661 aaatctcgtt gcatatcacc ttcatcatca gtgtcatcgt tatcctcaat gtcttccggc
     3721 acatcttccg ggtttaattc catatccaat agacgatgtg cttctgaaaa gagtggtaag
     3781 acaatgccgc tgtttggagc taacgtaatg cgatttacag tcagtccgaa acgttctgca
     3841 tagtccgcta ataaaccaaa tgaatttcct gcctcaacaa caaaagtccg tgggcgataa
     3901 acggccatag cctgacataa ttgcccacat aacgtagctg attttcccga accggttgga
     3961 cctaataata gcttgtgagc atttttggtt ctgtctttac ggttaaatgg gtcgaaatta
     4021 aatggtgctc ctcctcgatt aaagtaagtg atccccggat tcccagtccc ggtatctcgg
     4081 ccaaagatag gtaataagtt tgccaaatgt tgtacaaaat agtacttcgt gtagtaatgt
     4141 gatttggcat ccatctgcgg attaaaattc attggtagcc aacgcaaata gctgttaagt
     4201 ggggcaattt ctgcattttc cttcacgggt tctaggttgt tactgagcag aatcgttctc
     4261 aactggcgag aacgggtacg tagctccttt tcatccttac ctcgaacgta aaatgcaata
     4321 gctgcttgat agagtttatg cccctcttta agataagact gtacagtttg acagtcttct
     4381 tttaggtatt tcgactcaaa attttcacct accgctcgac tactaatttt ttctaaatgt
     4441 gcctccaact tatcctgtgg atggatgacg atggtaattg ccataatggt tgattccggc
     4501 aacaagtcaa ataatgcatt gatattacgc ccacgagtaa tctcgccagt catcaacccc
     4561 acttccggtt gtttcctcaa attattgact acaacaactt cgtgcggttg gtcatcaaaa
     4621 taccaatagt tgccttcatt tttcggttga gaataaaata aatcttcact gaaatcgtta
     4681 aacgctaatt ctggaagccc gtcatttgag gtttgtttac caaaaagatg gtagcaatca
     4741 ttgttgctta acccctcaaa attaatagat ggattaggat taaaccaacg taacagccat
     4801 tgacgaaatt gttcgccatc cagtcgctgc aattgtaatc cagcagttgt tagagctcca
     4861 tttatgcgag aacaagcatt gttcagctgc tcgacaatca gattttcatt agtgtcattg
     4921 gatttatcaa cataccgata gatcaccatt ttggtactac gtatacgacc agaccaagct
     4981 gtatttgtca ctcgctcatc aataaaaagc ccctctggtt taccgatatc cttgaaatgc
     5041 ttggcttgta cccgtaacca ttcttcgcta aatgcactat ttttagcgat aggcgagata
     5101 taatttcgta gctgttcaat ataaggctgt aaatcatcgc tgtcttggca ataaaattga
     5161 acaacgtacg gatttacatc caattcatca aagctgtctt gcaaggcatc tttgacaaga
     5221 ttacgtatcc gacttaaaaa ttcaatacta cggccagcag taccaatcgg cttaatatca
     5281 aatactgccc caacactacg ggcatcatca aggagtatca caccgtgctc attcaaatat
     5341 tctccccaag gtagatgatc gataaaggag ggctcttgtg agtataaccg acggtgatgc
     5401 tgtgactggg tgagttttcc actgcgtttt aattgttgaa cctcgttatt tacctcactc
     5461 attttatttt gaatgatgtc agactcaccg gtattttcat ttggttcact tgatataacc
     5521 cctgctttag tcggtttgaa agaggaaaat acctcactta aaaaagacat gattaaagcc
     5581 ctcttgttct atcacccggc tgagcatatt gaactcgtcc atagaaaggt agtactgtag
     5641 aatatcctgg aatactgaga ggctctccgg aacgagtttg atgtgggtac acatacataa
     5701 tcagatccgg attaggtaaa cgagggaaca agttattaat ttcattttct gccgtacggg
     5761 tataggctcg ttgctcacta ttaggaatat aatcgacagg gtcaagtgtt cgcccttgtt
     5821 gtgaacggta taagtgtaga tcgttattac tcgctccttt atcccaaata tcccgcatcg
     5881 tactgccgtt agtaggtaat aattcttctg ttgatgttgt gcaacctgtt atcaataagg
     5941 cacttatcat tatgcaaaat aaatgtttca tcgtttgttc cttctaatcc agttgtgaat
     6001 tcgttgattt tgagccatat ttcactttac gaccttgggc gttgtaatcg atttcaatct
     6061 ctttctcgat atgaatagag acacgatgac ccggtggcac atatacagca tcaaagtttt
     6121 cagcaaaacg ttttctaaac cagtcagcag attcttttaa gccgcctccg atagcttgtc
     6181 ctaagatgaa cttaccctga tcgccggtaa cagctccaac aacactactt ccatcaacaa
     6241 cagtggttgt ttgtgactgt gagaatcctt gggcagcagc acttgcagca gccaaaaaga
     6301 aattcgttcc caaatattct ggggcattgg ttttccgctc tcctggaaca caagggatac
     6361 ccgaactatc tgataaccag ccaatctctt cgccattccc tttattagag gtactcacaa
     6421 tacgtccatc attgaacaca aaagtcatac tttttacact gcctctaaca caggatagtg
     6481 tccagtcgcc agtagcagta cctgatacaa ttgctccgtc tacatcaggt aattcaatac
     6541 cattagcaat gagattttct cgaccaataa gtactttgaa cggataagca tccgatactc
     6601 gattatcaat cgggatacgt ccgatgagtc ccgtcattgc aactgaatca aggaatgttg
     6661 aattacttgg tatggtatat actgatgtca tctggttttt accacgtgcg tttccagccg
     6721 ttccttgtga gcttgtcaca gtatctgttt ccgggaaaaa cggcagacct ttcttttcgt
     6781 tatttcctgc agattgtcct ccattaaaat ctttcggaaa gccaaattta gttgctactg
     6841 tattgcctga cacaggtttt ccacttgcat ccaaactaat ctgatcgctt ggttctaccc
     6901 aatacattcc actggtatcc acgttggaca tagttgcacc accgataggt aatttatctc
     6961 ctgctgttcc aaatccttta ttcggtaccg tattaggctg agcctctacc tgaggggtag
     7021 actcttgtgt tgttggtttg ttattaacga gagtcgccat atcaaataat tgcattttca
     7081 aatctgcaat ctgctcttgc agttttcggg tttcattatt taccgcatca ttgatacgac
     7141 cattcactaa atcttctttc tgtttgagtt ggcgattttc atcaattaac tcatccatac
     7201 gacgctcatt ggatttaacg gttgtcacaa gggtacgcag cgtatcaatc ggcgtatcac
     7261 cttgaatacc cattgttctg acttgttcag gtgttaaatc tttaatggaa atatctaaaa
     7321 tttcctgttg tgtcggttgt ggaactgact cactacgtcc aaataaggca tagacaattc
     7381 caccgactaa gataaataca atgcccagta tgacaaataa ggctttattc gctttcattg
     7441 cctttcctcc tacttcgccg attgagccgg tttagtttca acttttgttg ttcttttcac
     7501 ttttttactg actagtttga ctggacgggt ttccggaatt aatgcgttat tagcatagcc
     7561 ttcggtcact aaatacaggg ttgtggtatc ttcattttct ccgtaccccc caagccaatt
     7621 atgctggaaa gtcgctgcat aaaattgtcc ttgaagctct cgagggtcaa gcgtaatttg
     7681 agtgttaccc ttattttgca aacgaatagc ggtaactaca tattcgtcta actgccagct
     7741 aattaaaggt gttgcttcta ttgaataagc cggtagcagc ttggtaattt ttttaggtag
     7801 acgatgtgcc acacgacgca caccatctaa aggttcaact gtacgtagtg gagcataaag
     7861 tgattgtgct gcataacggg tcaatgcggc aggtactgga agctgaggac ggctattcgc
     7921 aataggcaga tcagagcttt catcatctct attgcttgaa aaagattgtt tttctaccgt
     7981 accgtcaaaa accactcgaa ttgcctcttc aggattagcg actttcgaag ctgctgttaa
     8041 atcaaataga aaaatttcac cggttgtaac atcacggaat tctatgcgag tggagggaaa
     8101 tgtttctaat gcttttaaat agacggctcc accggtagat tgaattcgta gcttaccgtc
     8161 cagttctgcc ggataaccaa ccttgacatt tttatcgaca aaaataattc gttctttttc
     8221 cacttgtaac gcaacaggaa gtggttttct ttcccatttc atcaatacat cagccaagct
     8281 actcccagag aagcctataa gcaaagagac gagcaaaatt ggtagacgtt tcattatttt
     8341 ttctcctctg tttttggctc aacaccttct aagagttttg gaatggagtg atagcaatta
     8401 aaccctaatc cccaagggtt ttgagcagaa tcgacatcca ttctcacaat actgatagga
     8461 aaacgaatat aaactcgttt taccggctgt ccttggaaat gttcatccac acttaaatca
     8521 agattgacag cccaactatc ttcactgaat atggtaactt tatcttcact atatcctcta
     8581 ccggtaattt catacaccat acgggttcgg ctgcgtagtt cattgttacg cagacgatct
     8641 ttataatctt gtcgtaaaaa tgcttcacag tgtggtgtta aaaatggttt gagggtggtg
     8701 atatttttct cataatcctc ttcgccattt gtcatccacc gattcatttg ctggaaaatt
     8761 tgataggaga atgcataaat tgttggttta ggaatttccc accaagctcg ttggctccca
     8821 gcacgcagat ctggtgggtt gtatatcgta aggcgacttg ggaaagtata gattacgcct
     8881 gccagtacca aaataataat gaaaaacagg aaggcaaaaa ttcgagtcgt tttgatatgt
     8941 ttatcttttt cgtgtaattg gctttttaac tggctcattt gttatttcct tctatatcgg
     9001 cgaatagacc aaaacccttc tcgttttata aacttatgac cgttaaagag gtcatccatt
     9061 ttcttttcaa ctaatctatt taaataagcc tctggttttc ctcgtttaac cgcagcgaca
     9121 ataccttttc cgattaagac agttgcgatg cagagcaaca ttgccattgc cggaataaga
     9181 agccaaaaat cagttaatat ccacaagaag agaccaacaa tcagacctaa cataaatcct
     9241 aatccggcag atatgccgaa ctcactaact gtcatcccac cgtaaacggt agcttcacga
     9301 ttaaggcggg tgggaagaaa aggaatggtt gtatcttgtt ctgacatatt ggtctcctag
     9361 acattttaat tagaagagtc cgactgcaag tttgactaac cacaagcaga agaaaatcac
     9421 aataaagccg ataattaagg cgagaataaa gtgtccccaa ccttttttac cattttcaga
     9481 tgtagcttcg ttatagatgc caatcaatgc tttaacaact gtcaaaatgg ctacggctgc
     9541 taaaataaca gctccgagag tgacaagacc tttcagaaca atccaaataa tttccattgg
     9601 atctttggta ttactatcca cgcctggaat ttggaagtct gggattttgg aagcatcagg
     9661 accggctgca aatgcatttt ggagggaacc ccagaagaag agcattacag ccaaataacg
     9721 actatgcaga tgtttcgtaa gagatttaat gcggttcata atagacctcg aatctaatag
     9781 ataaagaaat aagtaacaca agctaacagt gccactcctt tgagaaataa aactaaaagt
     9841 gaaaaaggac ttttatctct aaatgaaaat cccttataac cactattcaa tgcccaagcg
     9901 acggctaaga gcagtaatga aagaaaaata atggcgatca tgattttcaa tctaaaaggg
     9961 tcgataccgc tggcaacaga aaacgcattc gcaggggagt aagacatcac tgcccccgta
    10021 atttgctata atcatcactt aatgtacgta gtacattcgg atcacgaggt aatgctcggc
    10081 ttggattgat atattgttga attccttttt tgacggtttc aatatcactg tgaatagcag
    10141 aatagttaaa gtattctcgt gttttaggcg aggctttagc tactttttct gctcgttgaa
    10201 gtgataattt tgccgcttcc agttgcttaa ttgcctgggc taattgctct tgttctgttg
    10261 aagcaagtgc tggcaagcaa gataaggtaa caaggacaac aatacctttc cttaaagatg
    10321 ttgaaataga catagtgcac ctctattttt agttttactt caggttaaga gtgccaaaag
    10381 cgatcctaaa atttaatgga aaactctgtt accgttcaga agagaaattg cacaaaatag
    10441 taaatggtga gaaagatatt attctatgtt taagctagtc aattaagtag tatcaacacc
    10501 gaaatcttca cgctttacga tgagatacca gatgagatat ctagcactgt tccttgtagt
    10561 tttcccatat gttgcccatt ctcttccttc agcacagaaa gtggggaata tttgccatgc
    10621 agaaaatgct caatataatt acggaggtct ttgggaatta agtttaagag gaaagttaat
    10681 ctgtaattat tggcaatttc taggcgatga tgagcgaaaa aagatagagt tacaattgga
    10741 tgagtacggg gaatttccta tttggaatac ctctgaacaa atttctgaac aaatcattga
    10801 agatgatgaa tatccacaat attgggaagt cgaagactgg gaggattctg attgggatac
    10861 tgagtcagaa aatgaagata cagaggcaac aacagaagaa taagcccccg catattgcta
    10921 agggcttatg aaatttacaa gaatttcttg aaactcgccg cagttataca gatggataaa
    10981 ccaaacaaac aggctgctgg gactaaaatg atgttcggat gaattgaaaa cgggatagat
    11041 aaataaagca cccaagctgt gaccatcatt ggcataatat aacgtctagc gtgatggtat
    11101 aggtaggctg attcccgccc ggcaccaaat tttcgtatat ctcgtaatga cagtccttcg
    11161 gttaaaccgg aaagtgcagt caataaaaag agtgggctgg taaaaacaat aataatgagg
    11221 cgaataataa aggtgatcac cacataaata acagattcaa tataggctct gccgtagtga
    11281 tgtacccact gttccatact accattaccc ggtgaagtta accactcctt aacacccgta
    11341 taaacgaata accagttata cacgttttca ataattgatg ttgcaaaagc agtagaagac
    11401 ttggcaaaca ggctttgaga aaagtcatcc gatagccatt gcatctcatt gagcatcatc
    11461 gtttggctat gcaaatgccc ttcttgcggc caccagaaag caatgcctat ccactctaaa
    11521 ataatgctga atatgagaga tactgcaatt gcagcaagcg acatatttat ttttccaaaa
    11581 atcaggttga ttaaacctga ttttcggcga gctttagttt cttcactcat tgcaaactat
    11641 cctctctatc gagctggcac tggacaagga tatagccgga aggattatta tcaaaagcaa
    11701 gataaaaagc gaaaatatct ttggatttat ccgagtgacg catagatact tcatcggcag
    11761 accataacga aagcccttga tctgcgaatt tttcggcaaa ctgatggaag gaataacctt
    11821 gttcaaacca ttcaataaaa taggattgac tatgaatcag gagttcttct gcattatcta
    11881 agccacagga agctgaaaac tccccattaa aattacggta tttatttggt aaatctaata
    11941 gattggttct tttttcctct ctcattttgg cactactcat cattttcctc ttcatcaata
    12001 tcgtaaggtt catctatgcc gaaattatct acttgatggt ctatctgtgt tttatattga
    12061 ggctccgaca tcgcttcaaa tgcttctgca atgtctcggg acggcgtata ttctgtaaat
    12121 gccggttgcc accaattttc aacaacgtga tagtttttac gcatataatc tgtcagctct
    12181 cgtaaagatt gatgcatcat atcatcttta tcgacagcag gtaacggcat tcgaattttc
    12241 cataatttac taccgtccat taaagcgaat gcttgtcctt ttggtaaatt ggtaatgttg
    12301 gccggaacca acataggaac ggtactttcg ctgatacgct gtccggtatt ggagctaaac
    12361 gccttatcat cgtcaggatt actggagtca gttgtactgg acgtgaccgt gctacgttta
    12421 atcgtcactt cgtgtaactg ttttgtgagt aattctgccg tagccggttc ttttaccctc
    12481 agcatataga gtgtattgaa gttacctaag gtttgtcccg ctttcggttt actgccgata
    12541 cgagcttcaa tgtcggagag tgtttgtgta taagcagtta cttgtattcc agcaccaccg
    12601 cctttgttga tgagagggat aaattcatca cccatcaatt cattaaattc atcacaatga
    12661 agattaattt tcactggttt ggatttttct ttgaatgctc ccggtaatcc gtcatttgtc
    12721 ccaaatttat ataaatgacc tgccattgag actaagtcag caaacatact gtttcctaca
    12781 gcggccgcaa ctgtcgcatc agagagagca tctaaaccaa tataaacgat tcctcgttta
    12841 cgaataatgg attcccagtc aaaaatcgga cgttcatcca aaatatcagc ataatccggg
    12901 gataacagct cagaaatttt ccctgtcgtt aatttttcca ataacggcaa caatgaggca
    12961 acaattttat cgaaataggt acggtcatag cgtacagcac tggcaagtcc ttgtagaatt
    13021 gggtcaaaga ctgcactttc agcaatgtac ttgttgatca caaaaatcag cggacggtct
    13081 ttcattccga aaggaagtgc tttttcatcc agtccagcgg cgatggttgc taaattttcc
    13141 caaatttttg gatcggtttt acgaatgaat ttttccgcat aatcaaggaa taatgaatca
    13201 atattttgta caaactggga aatttgaaca tagtttgggc gatttcccaa ttcaactaat
    13261 gcacgtgcga cgatattgac aaatcgccaa gcgaactctt taaatgccgc cgagttaccc
    13321 gctccactta gctgtcctga aatacgccca gcgacttccg aaatacgatt aaagcgtcct
    13381 actgggttat aacgggcaga aatttcggga taacctagat ggaaaacata aaactcatct
    13441 tctcgccccg ctcgttttgc ctccgcatac attcgtttga gcatatcggc atcgcctttc
    13501 ggatcaaaga agactaccac ttcacgctca tcagcagttt tacctcggtg gatatcctgg
    13561 gtaacaaaga cctcagctaa acgagtttta ccgacacgtg ttgtaccgaa tactaccgta
    13621 tgcccaaccc gagagctaac ggattgaacg acatcaacct catccggctc aattccatgg
    13681 atagcaggaa taccctcaac aggtggcaga ggtctaacca gattccaccg gctatccttt
    13741 gaggtaagat gtgttagcca attttcgtgt cgtttttcat actcacgagc cattttaaat
    13801 agcttagaag gctccagata ttttgaaccg ttatccgaaa aacaatcgtg taaccgttga
    13861 gtgtgaatag gtttccattc aaatccctta ccgacaaaca gatacttatt actgaccgga
    13921 atttgcttgc ttgtcattga ataattaggc aaacgtttca ggttgcgatg gtaacgcaca
    13981 atttgccaac cttgttttgc ccgataaaag ctcaatgctc caaaaccagc tgcaatactg
    14041 taaccgatac ttggatggag tgccaaagac caaggagctg cagcactgac aaaggcacaa
    14101 gaagcgtgaa ccgctgccgg aaaaaattca acaggaggtc gtaaccacgc ctctaaggta
    14161 tgtttagcag acattattgt gaaactccgc tttcagtgat taagacaggg taatgtgcaa
    14221 taccaattcg ctctgcaagg tcatctccgg gagttggtaa tattctcagt tccggtacaa
    14281 tgtctcgtaa ttgattaagt tcggagagtg tttgtacatt cactacaagc cctgttgcat
    14341 tcaacgtgat caacttctct cgattttgtt gtaaccactg agctgaggta ttatctgctc
    14401 caattaagaa aatggcttgc attccggtta aatcaaatgg tttttcttta atagtcccgg
    14461 gagatagttt atgggaaaca atgggtaaaa tatcagcctc actcactgag gctgaaatgg
    14521 aattcggata gtttggtgca ttttcatcgt gttccggttg caaagattca taaaaacgta
    14581 ccgcactttc accaccgaaa tcagcaatca cggttaaatc agcccaagag aaatgggaca
    14641 catataaact aaacaataat acttttacct tgttttgcat ttttacctct gaagagtatt
    14701 ttggggttct acccaaacca ttgcattttt aggttcaacc caaatcattt tattatccgg
    14761 ctcaacccat ttgaccgatt ttcccatttg gcttgtggga taaacgaaag ctgcaactcc
    14821 ggtatgaata tgcccttgct tggagacagt cataaaattg gcttcttgct tatgtgctaa
    14881 aaaacgtcct ttttggtaat tgagaaagtc tcttaccgtc atccaacttt tcattccatt
    14941 acgacgcata tttaaaatgt cttctttagt agctttcccc atcattgctc gatgcagccc
    15001 atctaagccg atattatgag ccatatataa attctcatca gtaataggga tattacggag
    15061 ttgaaattgc tcaatatgcc aacgtgccaa taatgccgtt gctaaggtat tcgtatattt
    15121 atctcgacgg ggatcggcgt aagaaccccg atttttggct gtaatcaact tcataccaag
    15181 ttgctttccc ctctctgttt cagatagcca gttccaggtt cccatagtaa actgcccaac
    15241 accggttgct cctgttggtg aaatgttgcc ataccagcca tcttccattt tgacaaaacc
    15301 tcgtagcatt gcttcactca cctgataacg ttgagcagcc atacgaatat agctgtcaat
    15361 ttcagaacca aatccattga agggctttgc ctgagaaatg ctaatgttgg aaagaaagac
    15421 tgcaacaatg actaatacac gagtgatgtc cattcaccat cctgtttgat ttggtaagca
    15481 gcgggcattt ttcctaacga atatctcagc caatagcctt tatcgtggtt aagggtaatc
    15541 aatcttttac tgacttttat tgggtcaata ttattgtcgg cagcccattt acgaatatca
    15601 ttatcggaga tgttttgccc aacaatataa atatcgagag gtgtttgatt atttgcgtaa
    15661 gagaggattt tcccaagatc acttttacaa gaatcgcagt tatcaaaacg ggtaaaataa
    15721 accacacgac ctaccgattg agaaatatgt ggttcaacct caaaaggtag ctcattcgga
    15781 taaagtttct caaactcctg acgataaact ttgtcaaaat caagttcttt tgacactcgt
    15841 tcataatatt ttttcgccaa catacgagca tatttttccc tttcctcagc agttcgtgct
    15901 tcgataccta aagcagttaa cggatctaga tttggcgacc acatacctcg ctcacctttc
    15961 attaattcgg tataacgact ccattcttca acggtcaatc cccattcttt agcctgtttt
    16021 aggctatcac ttaattgtga ttgttgatgt tggctttgtt tctgcaaagt cgattgtgag
    16081 ctacttacgg tctctgtttg catattttga gccagagtag gtaatgcaaa ggacaataaa
    16141 agaggtagta ctgccaacgg tatagcttta cggcataaat taaacttcat tgatatttcc
    16201 ctcattattc ctcaatgacc tcggttttaa ttgttgtcgt tgtaacggca acagcaggtt
    16261 tatgagggtt ttggaatgaa ctttcccgag ctttaaagca aatcgtacgg gatatatcat
    16321 taagagttag ttcataagcg ggacctgcaa tcatttgtag agcttcatat aatttcatcg
    16381 gaccgaattg gtaatgaact tttggaagag gtcgggtaaa aagtgtttga accgcattac
    16441 cttgttctcc gataggtgga taacacaaat ctaaacccgt attagttaat gtagaacgca
    16501 aaccttgctg gacattcgca gtaaaacgat ttttaggatt ggagactttg actgatacga
    16561 cttgttcaag cagatatttt tgaccttcct ccggagcaat actgattaag gtgtagcgtc
    16621 cgtcacgtac cacttcggta ttcgaggtag tctgttcttg gtaaatatct ttggacacga
    16681 tacggtcttg tggaggtaat tgttgcattt gaggtgttag caatgaatca ggcataggtg
    16741 tgatttcatc actattttga gctgtatcct gttgatgaac acaaccactt aagccaagca
    16801 taaaaacagt cattaaggat atttttgttt tcatttaatc tctccaagta tgaaaggaat
    16861 ctagaccaac tatggcgaag tcattgctga ttttgaatga tttattctgt tgttgattga
    16921 gagaataaaa aaacgccatc attagacggc gtttgaaaac acaataatgt gctgtgttaa
    16981 tcggatttct ccttagtatt cataagaaaa taagattgtt gtacagctac gatcagcttc
    17041 tgtgatgata taaagacttt catcatctac atcgtagcga gctacaattc tccctccgta
    17101 tttcattgct tcctgattcg ctaatttatc ttcctcacac aaattgcccc aatcaccata
    17161 acagtaacga ttaagcaatt caaccaaggc attttgattg aaacattcag caacagcacg
    17221 agttgtacat actcgaccaa gttcaaacgt catacatttc tcctaaataa aatacgggga
    17281 aatgtcaccc attaggggag tatttcccca agtgggtgga ctaagactgc ggcaagagtc
    17341 gtttttagta aaaatttgca aaaaattagg cagctaattt agccggcgtc atttctttac
    17401 gaatcttgtc taacatttca ttccaatcat ctatatcaca gattctttgg cgattaatgt
    17461 aaaaatgcgt gtctattgca ttgatatagt agtcaaattc aactaaatct gaatcttgct
    17521 caatatctaa ttcagtacag aatcgttgaa ttaagcgaga gatgacaagc tcctgataca
    17581 gattaccgaa atgtggtaca gtttcaaatt ctttggcaac aagccaaaag tcttcaatac
    17641 tgacaatatc gctatattct tctaagatgg cttcccattg tcctaaatag caagagatat
    17701 catcaaagtc aaaaaaggaa tcttccatta tgtttctcca agttttaaat aaaaagtggg
    17761 gaaacatacc taccgagaat gtttcccgat agggtgtata gtcaatatta gcgataaata
    17821 tcaccgctca ctgtgttaat tttacctaaa atagatttac aatgaatgtc agcactcaca
    17881 gttttcacat tcgaggttac attaccatcc actgtgacat caccactgac agttgaaaca
    17941 gatttggcat cgcctgttac acgaacattt tctgaacctg cattgaggtt ggttacattg
    18001 ccaaatactt caatgttgat agtcggagag ggttctaatg caattgtttg tccatcaaca
    18061 attaatacat tattgccggc agccattgag atataacctt tatttatccc aacaactgtt
    18121 tgcactgtac tattaatgat ttgaacgctg ttgatctctt tgcctttaga gtcaaagact
    18181 tgtttaccgt tgatataaat accttgtcga ttcatataat aatcctcttt gtattagatg
    18241 ttaaaatgct cgatagaata cgatattacc attggaaatt tcgttgcgag cagcctgtac
    18301 aaacgtagtt aattttgcta aagcaggtgt attagtttgc tctaatccta ctcgctctaa
    18361 catatctaga tcttctatgt tcaataccac cgtagcatct ttccagaatg tctcaatagg
    18421 ttgatagtat tccggttccg atgaggcttt aatttctttt ttgaagaaat gaaaagccat
    18481 ctcgttgtga actaagaaaa tccctctatc atcggcttca gtccaacgga aaaactcctt
    18541 ggaatgttca attaactgaa tatctgtacc ataaatgggg ttatcccaat cagacacaat
    18601 gttatattca cgctctaagc ctaacgaatt aaaacgttca agagagattg aatacgctct
    18661 agcaagccaa gaacgttgag cccaagattt ttcagggatt acctgtgccg gattttttcc
    18721 gaaccaatag caatcccaat ctaggtaaat ccaatccttt tcctctatgc ttttgtcaaa
    18781 accaataata gtaaagcctt gatcaagcca tttaccatag ccgttctgaa caaagacaac
    18841 atcgccaaca ataccatcaa aatggcgacc attaaggact gttggtgata atgttttgac
    18901 aaattgttga agtgagttca tcgtgtttct cctaaaattg taaaataaag gaaaacacac
    18961 cgcagggagt gtttccctac gggacataaa gtaaagccca acataaattg tcgggcttgg
    19021 gtaaaattac tcagattgct catctgcttt tggtttttct tgatagacga tttccccatc
    19081 aattttaatc attttgatgc ggattaagcg acctttaaga gacactccag tatcgccttt
    19141 tttgtgatat ttactgtcac ttgaataagt gaaagtatcg aaccacaaat cagccattac
    19201 aaatgataca agcacttttt tctcttcaga gaccgctttt tggcattttt tgatgagtgt
    19261 ttcggtttct ttaccgacta cattcatatc aaaatatctg tactctggtg agtcagattc
    19321 gccaacaaga gctgcaacac gacaagcata aaaaggattt ccttttttat gctctactaa
    19381 acgaatatcg tttaaatagc caatgccggt agtatgtaga ttgaagtaat ttttttgagt
    19441 agaagtttga gttgtcatag tttgtttctc caaatgtaaa aaagcggaga aacatcctta
    19501 cccaacacgg gaaaaatgtt ccccgcaagg tggaagtaaa atggaatctc aatgaatatt
    19561 cactgaaatg atagggattg agttggcatt cctgcaaatt tacagagttc cctttcagaa
    19621 tgctgggaga cattttggca ataactcaac tacctctaag gatagccgtc gcttctcagg
    19681 agttatgcga ctt
//
LOCUS       DANLXB010000022        19549 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLXB010000022 DANLXB010000000
VERSION     DANLXB010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19549
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            113..2722
                     /gene="adhE"
                     /locus_tag="PXD41_000522"
                     /gene_synonym="adhC"
     CDS             113..2722
                     /gene="adhE"
                     /locus_tag="PXD41_000522"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL6288087.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            2869..3765
                     /locus_tag="PXD41_000523"
     CDS             2869..3765
                     /locus_tag="PXD41_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL6288088.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3775..5184
                     /locus_tag="PXD41_000524"
     CDS             3775..5184
                     /locus_tag="PXD41_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL6288089.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5291..6514
                     /locus_tag="PXD41_000525"
     CDS             5291..6514
                     /locus_tag="PXD41_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL6288090.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6552..7748)
                     /locus_tag="PXD41_000526"
     CDS             complement(6552..7748)
                     /locus_tag="PXD41_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL6288091.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7768..8259)
                     /gene="tsaE"
                     /locus_tag="PXD41_000527"
     CDS             complement(7768..8259)
                     /gene="tsaE"
                     /locus_tag="PXD41_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL6288092.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8259..8813)
                     /gene="orn"
                     /locus_tag="PXD41_000528"
     CDS             complement(8259..8813)
                     /gene="orn"
                     /locus_tag="PXD41_000528"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL6288093.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8823..9302)
                     /gene="coaD"
                     /locus_tag="PXD41_000529"
     CDS             complement(8823..9302)
                     /gene="coaD"
                     /locus_tag="PXD41_000529"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL6288094.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9304..10584)
                     /gene="waaA"
                     /locus_tag="PXD41_000530"
     CDS             complement(9304..10584)
                     /gene="waaA"
                     /locus_tag="PXD41_000530"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL6288095.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10764..12143)
                     /gene="yegQ"
                     /locus_tag="PXD41_000531"
     CDS             complement(10764..12143)
                     /gene="yegQ"
                     /locus_tag="PXD41_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL6288096.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12271..12642
                     /locus_tag="PXD41_000532"
     CDS             12271..12642
                     /locus_tag="PXD41_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288097.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12681..16157)
                     /gene="dnaE"
                     /locus_tag="PXD41_000533"
     CDS             complement(12681..16157)
                     /gene="dnaE"
                     /locus_tag="PXD41_000533"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL6288098.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16382..17479)
                     /gene="lptG"
                     /locus_tag="PXD41_000534"
     CDS             complement(16382..17479)
                     /gene="lptG"
                     /locus_tag="PXD41_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL6288099.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17479..18588)
                     /gene="lptF"
                     /locus_tag="PXD41_000535"
     CDS             complement(17479..18588)
                     /gene="lptF"
                     /locus_tag="PXD41_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL6288100.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18762..>19549)
                     /locus_tag="PXD41_000536"
     CDS             complement(18762..>19549)
                     /locus_tag="PXD41_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288101.1"
                     /translation="GKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGNVGNL
                     LQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKIGERL
                     FLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIATNQE
                     KIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFEDIAQG
                     ENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT         5593 a         4443 c         3800 g         5713 t
ORIGIN      
        1 atcaaagcaa acataaaaca ttattaattt ttaacgacaa aataactctt ttgggtaata
       61 atttcatcag ttaaaaaaat tatcaaattt aaattttatg aggaaccaaa ctatggctaa
      121 aaatacgcaa ccatttgatg cccaagcaga agtgaatgag cttgttgaaa aaggcttaaa
      181 agcccttgat gagtttagaa aactcaacca agaacaagtg gattttattg tcgctaaagc
      241 ctctgttgct gcccttgata aacacggtat tttagcaatg cacgcttacg aagaaaccgg
      301 acggggtgtg tttgaagaca aagccactaa aaacctgttc gcctgtgagt atgttgtcaa
      361 taatatgcga catttgaaaa ccgcaggggt cattagtgaa gatgatgtca ccggtattac
      421 cgaaattgcc gaccctgtcg gtgttgtctg cggtatcacc ccaaccacca acccaacctc
      481 aaccaccatt ttcaaagcgt taatcgccct taaaacccgt aaccctatcg tttttgcttt
      541 ccacccgtct gctcaacaat cttctgccca cgctgctcaa attgtgcgtg atgctgccgt
      601 ggctgccggt gcaccggaaa actgtattca atggattacc cagccttcaa tggaaggtac
      661 atctgcttta atgaaacacc cgggcattgc aactatttta gccaccggcg gtaatgcaat
      721 ggttgaagcc gcttactctt gcggcaaacc ggcattagga gttggtgcag gcaacgtacc
      781 ggcttatgta gaaaaaaccg ctaaattaaa acaagcggtg tatgacattg taatgtcaaa
      841 atctttcgac aacggtatga tttgtgcctc tgaacaagcg gcgattgtag ataaagaaat
      901 ttacgctgag tttattaaag agatgcaatc ttacggcgtc tatttagtga acaaaaaaga
      961 gaaagcctta ttggaaaaat acattttcgg tattgataaa gccaaagatg aaaactgctc
     1021 aggtgcaaaa ctcaattcag cggtggttgg caaaccggct gcgtggattg cagaacaagc
     1081 cggctttaaa gtaccggaaa aaaccaatat tctgttagcc gaatgtgcct ttgtgggcga
     1141 agctgagcca cttacccgtg aaaaactttc gcctgtactg gctctgttaa aatccgactc
     1201 caccgaacac ggtttggaat tgtctgaagc gatggtgaat ttccacggtt tagggcatag
     1261 tgccgccatt cataccgaaa acaaagcctt agccaaaacc tttggcgaac gggtaaaagc
     1321 cattcgggtg atttggaact caccatcaac ctttggcggt atcggtgatg tatataactc
     1381 cttcctgcca tcgcttacgc tgggctgtgg ttcctacggt aaaaactctg taggtaacaa
     1441 cgttagtgcg gtgaatttaa tcaatatcaa acgtgtgggc agacggagaa ataatatgca
     1501 atggtttaaa gtgccatcaa aaatctactt tgagcgtgac tcaattcaat atttgaaatc
     1561 aatgcacgat gtgcataaag taatgatcgt aaccgaccgc tcaatggttg atctcggctt
     1621 tgtggataga attaccgaac aacttcgcca acgtcgcaac caagtgatga ttcagttctt
     1681 taccgatgtt gaaccaaacc caagcctgca aaccgtacaa cgtggtacag aattaatgcg
     1741 tagcttccag cctgatacta tcatcgcact tggtggtggt tcaccaatgg atgcagccaa
     1801 aattatgtgg ttattctacg aacaaccgga agtcgatttc cgtgatttag tgcaaaaatt
     1861 tatggatatc cgcaaacgtg cattcaaatt cccacaatta ggcagaaaag cgaaatttgt
     1921 cggcattcca accacctccg gaacaggctc tgaagtcaca ccgtttgcag taattaccga
     1981 tggcgatatt aaatatccgc tcgctgacta ctcgcttacc ccaaccattg cgattgtcga
     2041 tcctgcgtta gtaatgtctg tgccgtctca cgttgctgcc gacaccggtt tagacgtatt
     2101 aactcacgct accgaggctt acacatcgat tttagccaac gactataccg acggcttagc
     2161 cttgcaagcc attaagttag tgtttgaaaa cttggaaaaa tcggtcaaag agtttgatga
     2221 aaccgcccgt gaaaaaatgc acaatgcttc cacaatggca gggatggcat ttgccaatgc
     2281 cttcttaggt atttgccact caatggcaca caaaatcggg ggtaaattcc acaccatcca
     2341 cggtcgaacc aatgcgattt tactgccaca cgttattcgc tataacggca cacgcccaac
     2401 caaagtggca acttggccaa aatacaccaa ttatgtcgca gatgtgcgtt tccaagatat
     2461 tgccagaatg cttggcttac cggcagaaac cccggaacaa gcggtggaag cttacgccca
     2521 agcggtacac gatttagccg ttcgttgcgg cgtgaaaatg tcgcttcgtg agcaaggcgt
     2581 tgatgagcaa gccttcttga atgcccgccg tgaacttgcc ctacacgcat ttgaagacca
     2641 atgcacacca gcaaacccac gtttggcaat gattgaagat atggaagcga ttatgactaa
     2701 agcctactat ggcaaggaat aaagcacaat ttaatcgtta aacttactaa atggccgctt
     2761 gcaagcggtc atttttcttg aaatttttac ttttcccttc acaaaatact ttcgctcttt
     2821 tacaaagcat agtattttta tcgctccttt tatcttacag gaaatactat gcaaattacg
     2881 attttagacg gcggaattag ccgtgaatta atgcgtcgca atgctccatt tcatcagcct
     2941 gaatggtctg ctgccgcttt gtatgaaggc ccacattttg tgcaagcggt acacgaagat
     3001 tttatcgctc acggggcaga agtgattact accgacagct atgcggttgt gccgtttcac
     3061 attggcgaaa aacgctttgc ggcagacggc aaaatgcttg ccgatttagc cggtcgcctt
     3121 gccaaacaag cggtcaaaaa ttcaggaaat attgcaactc aaattgcagg ctcacttcca
     3181 ccaatgtttg gctcttaccg tgccgattta attcaaatgg aacgctttgc tgaagtcgct
     3241 cagcctttaa ttgacgggct ttcgccttat gtggatattt ggctttgcga aacccaaagt
     3301 gcgattattg agccgatttc catcaaagca ttattgccga aagacaaccg cccgctttgg
     3361 gtctctttta ccctcaccga tgatgaacca accaccgagc cacaacttcg ctcgggcgaa
     3421 agcgttaaac aagcagtcga agaaatggtg aagttaggcg tgcaagcgat tttatttaac
     3481 tgctgtcagc ctgaagtgat cggcgaggca ttaagtgtaa cccaaaaaac tttagccgaa
     3541 ttaaaagcta cccatattcg cacaggagct tatgccaacg cctttgctcc acaaccaaaa
     3601 gatgccaccg ccaatgacgg tttagatgaa gttcgccaag atttaaccct ggaggcttat
     3661 ttaggctggg caaaaaaatg gacggaacaa ggggcaacta ttatcggtgg ctgctgcggc
     3721 attggggttg agtatattga aacgctggca aaaaatttaa aataaggaaa tcgaatgtca
     3781 aataaaaaaa taggattaat ttcactcacc gccttagtgc taagctcaat gattggctcg
     3841 gggattttca gcttaccgca aaatatggca gccgttgccg gagcagaagc cattaccatt
     3901 ggctggctga ttaccggtgt cggcattatc tttttaggtt tatcgttttt ctttatttcc
     3961 cgcttgcgtc cggatttaga cggtggcatt tacacctacg cacgggaggg ttttggcgag
     4021 ctgatgggct ttatgtcagc gtggggctat tggctctgtg ccaccattgg gattgtagga
     4081 tacctcaccg ttgcttttga aggtttgggt gtatttaccg acaacccgaa caccgtgatt
     4141 ttcgggcaag gtaacaccct cgcctctttt attggatctt caatcattgt gtggctggtt
     4201 cacgccctca tcgcaggcgg tatcaaagaa gctgcctttg taaacttaat tgccactttt
     4261 gtgaaagtcg ctccgctcat tctgtttatc gggttaggca tttggtattt cgatgtggat
     4321 ctgtttaata gcgatgttaa agccaccgca cttaataata gtgtaagcga ccaagtgaaa
     4381 agcacaatgt taatcacctt atgggtattt accggtgtgg aaggggcttc tgtgctgtcg
     4441 gctcacgcga aaaagcgttc tgacgtggga ctggcaaccg tattaggtat tattattgca
     4501 cttgctcttt atgtggcaat taccattctt tcactcggaa ttctgccacg ggaaactatt
     4561 gccaatatgg caaatccgtc aatggggccg ttgctcgatg caatgatggg cccaaccggc
     4621 aaagtgatta ttactgcttg tttaattgta tcggtgcttg cctcttacat tagctggacg
     4681 atgtattcgg cagaagtgcc ttatcgtggc tcaaaaaacg gggctttccc gaaaatttta
     4741 gacaaagtga ataaaaacgg cacgccgatt aactcactct ggtttaccgg ctttatcgtg
     4801 caattttgct tggtgttggt gtttgttttt gagcaaagct ataacacctt attgctgatt
     4861 tccacctcga tgattttaat tccctatttc ttaatcgggg cttatttatt caaattagcg
     4921 attcaaacca acgccacttg gtacattaaa ctcaccggct ttatggcagc cctttacgga
     4981 ttatggattg tctatgccgc aggactagaa tatttgctgc tttcggtggt gctttatgta
     5041 cccggaattt tactcttcct ctactccaac tataaattca acggcagatt aaccctttca
     5101 accgctgaaa aggtcatctt aatcgtgcta ctggtaattt ttggctatgc cgtgattgag
     5161 ctgccagcac tattagcagc ataattccca tcaaaaatga ccgcttgcaa gcggttattt
     5221 ttctaggatc ttctgcaaag attcattaga atagaaacaa cgtcaataat aaataaaaag
     5281 aggagaaaca atgcaaactt atcaacataa agccctttgt cgggtaagaa ccattaccct
     5341 ttttctgagt ttaaccaaag ataaattgca gtgggaaacg gcattaaatg cggcaaaagc
     5401 agaatttgat ctattagttc ccgctattca aacacaaggc tatcacatac aatcgattcg
     5461 aatcgttacc aacagtttcg gggaatatct tgatctcact aatattgaaa cagcgaaaca
     5521 ggatttagcc tatcttaaac agctattaac ccaacttaac gatagcggtt tacgcattcg
     5581 ctttgccatt ggtgaggcaa aaacacccca cgaattagca ttactacctg agctgatttt
     5641 aaattatggt gatttatcta acgcttgtgt caatattgaa cccgatgaat ttgggatttt
     5701 agacaatgaa accattttac aatctgctca aattatcaaa caaatcgctg aaattacccc
     5761 aagaggtgaa ggcaatttta attttacggt gaattttaac tgtaaacctt ttattcctta
     5821 ttttccggca agctaccatt caagcaagct ccctaacagt tttgtgatag gcctagaaac
     5881 accagatcta ttagtagcgg tgttaaaaga gctgaaagcc agcccacata acgactttta
     5941 tcgccaatgc tatgaaacga tgtctcaagc cttgcaatat cacgttgatg aagttctcga
     6001 agcagtaaaa tcggtacaac acaaattaca atttgccttt gctggcattg atagttctgc
     6061 tgctccgtca aaaaactgtg cctcaatgac agaagtttat gaattaatgg gcgtaccatt
     6121 ttttggggca gccggaacag tagaagcctc ttcacttctg acaaaagtct ttaaatctat
     6181 caaacatgta ccgcttgtcg gtttttcagg tttaatgttg gcagtaaccg aagatttagg
     6241 cttagccgca ggcacacaca aagcccaatt cgacattcgt gctttactaa cttatagtgc
     6301 tgtttgtggc attgggttag ataccgtacc gatttccaat gaagccactg ttgaacaaat
     6361 tgccgcatta atgcgagaca ccggcacaat ggcatttaga ctaaataaac cgcttacagt
     6421 acgtttattt ccaattccga ataagagtgc tggggaagtg acagaatttg aaagtgatga
     6481 tttatgtaac tgccgaattt tagctgtacc ttaaaataaa ggctgatgga tatttccatc
     6541 agcctttcaa tttacttcac cttcaatttt ttacctaccg tgatctgata atttttcaaa
     6601 ttattcagct cactgatttt ttgcggcgta gtaccgtaag ctctagcaat cgagtaaacc
     6661 gtttcatctt gttggacaat atggtagcca ctgttagaca ccttaatttc tctttgagag
     6721 tctgattttt tagactgatt tttttgatct ttctcaagag ctgttttttc ttttagttgc
     6781 tgctcttttt tcttattggt tttagccgaa tcttcttttt tatcctcttt tttgctcttt
     6841 tctttcaatt ttgtcttatc tgattgcgta ttcttctctt gtttctcaga agcaggcttt
     6901 ttagttaaat cagctttagc agttttttcc tctttcttat tttgcttatc ttctttgtcc
     6961 gattttttac tgaccgaaga actagcaact gcattttttg cccgataagc gactaatcca
     7021 ttataaatgg cccgagcaac ttgtttacga taatttgcac tggctagctt tgcttcctcg
     7081 gttgaattag ataaaaatcc cgtttccacc aatacagatg gaatatcagg tgaacgcaga
     7141 acacttaagc ttgcgtgctg aggagacgat tttgctaatg cagccacatt tgacatttta
     7201 gctaaaatgc tcttgcctaa ttcatagccg gcacgttgag agtgagagaa ctgtaaatca
     7261 agcactgttt gatttaaata acgttcattg ttgcttgaaa gcaccgaacc agccccgcca
     7321 agtaattccg actgcttctc gtggtcttcc aaccatttac ccatttcatc gctagcacgg
     7381 ctattagaaa gtacccaaac cgaagcccct ttcaaggaat cgccacgagg cgaagagtct
     7441 gcgtgaatag aaaccagcag atcggcacga tgcttacggg caatctcggt acgttgcggt
     7501 aattggataa aataatctcc cgagcgtgtc atcactgctt taaaattagg atcggcatct
     7561 aacaaggctt ttagctcttt agaaattgcg agggtaacgc ttttttccaa aatccccaga
     7621 tttttaccaa tagcccccgg atcttttccc ccgtgtccgg catcaatcgc cacaatggtt
     7681 ttggcaaatg tggaaaaact gaataaactc aatgtgctaa aaacaataaa tctgataact
     7741 tgcttcatta cctcccctac aagcggtcta tttttgatga aaatttacta atatatctac
     7801 tgcagtttga ttttgcggca acaggctaat ctgccgtccg tcattcttat aatcaatttg
     7861 gatcacaaaa tcagcctctg gaatcattcc tttaccttta actgcccatt caagcaaaca
     7921 aagcgtttgt ggtttgaaat aatcacgaat tcccataaac tccagctctt caggatcggc
     7981 taagcgatac aaatcaaaat ggtaaaggct gaaaggcgga agttggtatt cttccaccag
     8041 agtataagtt gggcttttta cattgccttg atgcccgaaa gcccgtacga tcgagcgggt
     8101 taaggtggtt ttacctgccc caagttcgcc gtttaggtaa acaaccagcg aatgagcttg
     8161 gtcttgcaat aaatatttct taagttctaa cgcgaatgat tgaccaaatt ccagcaattt
     8221 agtttcatct tcgcagtaaa aagagagaga atctgtcatt atttttggtc tagctgaata
     8281 aaatgttccc gataaaattt caattcgtta atggattcac gaatatcgtc caacgctaaa
     8341 tgcgtattgc ctttactgaa tttatctaaa atctccggtt tccaacggcg tgccagctct
     8401 tttaaagtac tcacatctaa gtggcgataa tggaaataat cggctaaatc aggcatatat
     8461 ttatacaaaa aacgtttatc ttgagcaatg ctgttgccgc aaatcggaga agcgcctttt
     8521 ggcacccagc gttttaagaa gtctaaagtt tgcaactctg ctgcccgttc agtcaatttg
     8581 ctcgctttca ctcgttcaat cagcccgtta gcggtatggg ttttgacgca ccaatcactc
     8641 attttctcta ataaatcatc ggtttggtgt accgcaagta ccggtccttc cgctaaaata
     8701 tttaaatcct tatcggtcac aatggtggcg atttcaataa tgcgttcttt ttccggatct
     8761 aaccctgtca tttcaagatc gatccaaatt aaattttgtt cgttttgagc cattttattt
     8821 ccttacactt ttgcaatttt tagggcattt ttgaccgctt gcggcacaaa ttggctgatg
     8881 tcaccattgt ggcgatagat ttcccttacc atcgttgaag aaaggtaacg ccattctatt
     8941 gaagggggaa aaaaaatagt ttctaaatcg cccgataatt tgtaatttaa ctgagcgagt
     9001 tggatttcat agtcaatatc atctgcccca cgaataccac ggattaacgc tttggcattc
     9061 tgctgtttgg caaagtctgc taacaatcca ctaaagccaa tcacctcaat attttgccac
     9121 tgggtacagc tttgtttaac aagctccact cgttcttcaa gactaaaaag cggctgcttg
     9181 cttgggtttt gagcaacggc aacaatcact tttccaaata agtgagaggc tttgcaaatt
     9241 atgtccaaat gcccattggt aatgggatca aaggtgcctg cataaattac gttataactc
     9301 attttatttc tctaaatagg aggctaataa atccaaatgg cgttttaatg ccccttgatt
     9361 ttcctgtaac acgcttaagc cggattttgc aatttcttgt ccgatttggg gctgcttaag
     9421 caataattga atgctctcgg tcaaagcctc gactgaactt tcaatttcaa tcacgccttt
     9481 cacctcacgc aatttctcaa agatttcagg gaaattatag gtgtaaagcc cagaaaccac
     9541 cggaatatta aaagcgattg gttcaagtgg attatgccca ccgtgtttga ccaaactgcc
     9601 tcctacaaaa gcaatgtcag acaacccata cagtaacatc atttccccca ttgtatcacc
     9661 taacattact tgagtatttt ggcttaacgt tttattctca gtacgtttta cataatttaa
     9721 atctgatttt tgaatcagta gctcaactaa accaaaacgc tccggatggc gaggcactaa
     9781 aatcaacact aaattcgggt aatgctctaa taagagttta tgagcatcta aaatcagctt
     9841 ctcttcccct tcgtgagtac tgccggcaat ccaaatcggt ctctctgtta aattcagact
     9901 agctttagtt ttaatcaccg attgatgaag ctgtggcgta atttctaaat caaatttcag
     9961 gttaccggta ttaaccattt ttgccggtgc ataaccgagt gctaaatagc gatctcggct
    10021 tacctcatct tgagccataa tcagactaat ttggttgagc atatccttaa tgctaccttt
    10081 tacccagcca taacgcttcg cagaacgtgg cgataagcgg gcattggcaa tcacaaatgg
    10141 aattttacga atatttactt tacgaattaa attcggccaa agttcggttt caattacaat
    10201 catcaatttc ggatcgataa aattcaaaaa ccgctcgata gcatcaggta agtcataagg
    10261 caaataaaaa tgtgaaacac tattaccaaa agcagcttgc acacgcccag agcctgttgg
    10321 cgttaccgtt gtgactatca acggaagttc aggatattgc ttgctgactg ccttaatcaa
    10381 aagcgttgca gcaatcacct caccaaccga tgccgcatgg attaccaccc cttttgcttt
    10441 cggtttttcc gattcgtcat aaatcccata acgctcccat aaacgtttcc gataagccgg
    10501 ttgtttacgc cctttgtacc acattaatag cagaaccaca ggctgtaata gataacttaa
    10561 acaaatatag agtaaacgta gcatttattt tccttatacc ataaccctca cctcttgtgg
    10621 gagagagtca aatacgccaa taaatcgttc ctctcttgtt cgagaggggg gaacaagcgg
    10681 ttatttttac caaaaatttt gcaatctata tcctcaaaga caaaaccacg gaataacctt
    10741 aatccgtggt ttatctcgca tcattacgct tgatgtggat tgcgggtatt cgtattcact
    10801 aagttacgca ttaaaagtgc aaaatccaac tcaatatctg ccggcacatc taaaaagaca
    10861 aaatgcccgt caccgagtgc tgcgtccaca ttttcatttt tgcggttaag catacgctcg
    10921 attttaaata caatgttgcc tttaggggtc atcatttcca ctgaatcgcc cactaagaat
    10981 ttgtttttca ctgccacttc cgccaagcct tctgcattgc gtttgccggt aaattcgccc
    11041 acaaattgtt ggcgttctga aatcgaatag ccatattcat agttttggta ttcatcgtga
    11101 gtatgacgac gtaagaagcc ctctgtataa ccacggtgtg caaggctttc aagagtatcc
    11161 attaaacttt cgtcaaacgg tttaccggca gcggcatcat caatcgcctt acgatacacc
    11221 tgagccgttc tcgcacagta atagaacgat ttcgtacgcc cctcaatttt cagtgaatgc
    11281 acccccattt gagttaaacg ctcaacgtgt tgtactgcac gcagatcttt agagttcata
    11341 aaataggtgc cgtgttcatc ttcaaaggcg gtcatttgct catcagggcg ttgtgattct
    11401 gtataaagga acactttatc tgttgcttcg ccattaccta gagtaggagc cacatttttg
    11461 acttcaattt ccggctcata cttaggcaca atttgcccta cctcatcaat cttaccttct
    11521 tccattttat attcccaacg gcaagcattg gtgcaagtgc cttggtttgg gtcacgctta
    11581 ttgatatagc ctgaaagcaa gcagcgacct gaatatgcca tacacaaagc accgtgaacg
    11641 aagatctcaa gctccatatc cggcacttgt tcacgaattt cttcgatctc ttcgagtgat
    11701 aattcacggg ataaaatcac acgggttagc cccatttgac gccagaattt caccgttgcc
    11761 cagtttaccg cattggcttg caccgaaaga tgaatatcca tttcagggaa attttcacgc
    11821 accaacataa ttaagcccgg atcagacata atcaaagcgt ccggcttcat atccactacc
    11881 acttttagat ctttgatgaa ggtttttaat tttgagttgt gtggcgcaat gtttaccacc
    11941 acatagaatt tttttcctaa ggcgtgggct tcatcaatcg caacttttaa attggcgtgg
    12001 ttaaattcat tattacgcac acgcaagcta taacggggct gtcctgcata aatcgcatcg
    12061 gcaccataag caaaagcgta acgcatattt tttaaagaac ctgcaggcga aagtagctca
    12121 ggtttggcat attttaaagt catattattc tcttttctga taacaagtca ggacttctcg
    12181 acgtgagaag cgtaagcggt atattttcta agaaatattg cgtgatggca agctaatcca
    12241 ttacaatccg atttttatgt ggggaacaat atgaaactta aatacctttt agcaacaaca
    12301 ttactggctt tttcaacatt taccgccgct caaagcatca agacggagat gatgcaaatg
    12361 aatatgcaag cgaataaatt gatgcgtgcc gaatcggcag aagagtttag cgaaattgcg
    12421 aatgatttca ttataattac cgagaaaacc aaagggattt ttcccaatag cgtagaaggc
    12481 gataaagcag ctcaggaaga ttaccaagcc ggtatgcaaa aattaattga tatggttaat
    12541 caagccagtg agaaagctca agcaggtgaa ttgcaagaag caaaaatgct gatttccgag
    12601 cttgaaatga tcaagcgtga atatcacaaa aaatacaaat aattcaacac attaaaaggg
    12661 tgagctaaag ctcacccttt ctattcaaat tccagttcaa ccgaattctc accaagaagt
    12721 gcctttaatt cgctaaacat tgcctcattc gggctgattc gccactctac tccgcctttg
    12781 agcaataccc taccttccgg gctttggtaa taaaaatgca gcggtaaagt gccttcttta
    12841 tgtggggtga tgatagcggt cattttttta ataaaatctg cagaaagttg ctctttgcta
    12901 atcgctaacg ctaaactttt ggcaaatcga ccccttgctt catcaaggga taacacttct
    12961 cgagccgaca ttttcagtcc accgctgaaa tcatcaaact gtaccgaacc tgttgccaca
    13021 ataatttggt cttgttgcat caaatgcccg aaattttcta aggcttccga gaaaagggta
    13081 atgtccaatt tccccgagcg atcttcaata gtcgcaatcc caatacggct tcctcgcttg
    13141 gtaactgcca ctcgagatgc cataacaatt cctgaaaccg tggtcatttg ccctcggaaa
    13201 gtcggttgca attcattcag ccgattaggg gcatagtggg ataattcttt gaggaatcta
    13261 ccaatcgggt gtccgcttaa atacagcccg agcgtggcac gctctccatc taaaatcact
    13321 tgctccgacc attttggcgt attggcgtaa gcattttgca cttcttccgg tgtctcggta
    13381 agcacgccaa acatatcgct ctgcccgagt tcctccattt tagcgtgctg atctgaggct
    13441 ttaagtgcat cttccaaatt cttcatcaag gcagctcggt gagggcctaa tttgtcaaaa
    13501 gcaccggaca taatcaggct ttcaaaggtg cggcggttga tttttttcag atcgacccga
    13561 gcggttaaat caaatagatc tttaaatttc ccctcttttt ggcgagctgc cagaattgcc
    13621 tcaatcggtc cttccccaac gcctttaatt gctcctagcc cgtaaacaat ttcgcctttt
    13681 tcatttacgc taaaacgatg tttaccgctg tttacatcag gcggcacaac ggttaagccc
    13741 atattcatac actcatcgta gaacccgaca attttatcgg tattatccat ctctgaggtc
    13801 attaccgcag ccataaattc tgccggataa tgggctttta gccaaagtgt ttggtaagaa
    13861 accaacgcat aagctgctga gtgagattta ttaaagccgt agccggcaaa cttttctacc
    13921 aagtcaaaaa tttgaccggc aagtttaccg tcaatccctt tggcttccgc ccctttttca
    13981 aacacttcac gctgtgcagc catttcctcc ggtttcttct tacccattgc acggcggagt
    14041 aagtccgctc caccgagtgt ataaccggca agctcttgtg caatttgcat aacctgttct
    14101 tggtaaacaa tgaccccata agtcggctcg agaataggtt ttaagcattc gtgttggtat
    14161 tgcggatcag gataagaaac ctcttctttg ccgtgtttac ggtcaataaa gttctgcacc
    14221 atacctgatt ccagcggccc tgggcggaat agtgccacca atgcgataat atcttcaaaa
    14281 cagtccggct tcaggcgaga aattaagtct ttcattcccc gtgattcaag ctggaatact
    14341 gctgtagttt tagctgccag caacagagca aaggattttt tatcatcaag cggaatggtt
    14401 tcaatccgaa tcggctcttt gccttcacga gccaaacgtt cgttaatcat ctccaacgcc
    14461 catttgatga tggtgagcgt acgcaagcct aagaagtcaa acttcaccaa tcctgcatat
    14521 tccacgtcat ttttatcaaa atgggtaacc gggtgtaagc cctcgctatc gcaataaagc
    14581 ggcgaaaaat cggtaatcgc agttggggcg atcaccacac caccagcgtg tttacctgca
    14641 ttacgagtta caccttcgag cttacgagcc atatcaataa ggtctttcac ctcttcatcg
    14701 gcttcatata gctcaggcaa ttttggctca gcggcaaagg ctttttcaag cgtcattcct
    14761 ggatcgggcg gaatgagttt ggagatgcga tccacaaagc tataggggtg tccaagcact
    14821 cgccctacat ctcgaatgac cgctttcgcc gccatagtac cgaatgtgat aatttgcgat
    14881 accgcttgtc gcccgtaggt ttccgcaacg tgttcaatca cacggtctcg cccgtccata
    14941 cagaaatcaa cgtcaaaatc gggcattgaa acacgctcag ggttgagaaa acgctcaaaa
    15001 agcaaatcaa attccaatgg gtcaagatcg gtaatcttca acgcataagc caccaatgag
    15061 cctgcccctg agccacgacc cggtcctacc ggaatatcat tatctttgga ccattggata
    15121 aactccatca cgatcaaaaa gtaacccggg aaccccattt ggttgatcac atctaattca
    15181 acttgcaatc tttcgtcata aaccgaccgc ttgttcgccc tttcctcagg atcagggaat
    15241 agaaactcta aacgctcttc taagccttct ttcgattttt ttaccaagaa atcttcggtg
    15301 gaaagctcac cggtcgggaa atttggcagg aaatactcgc ccaaacgcac ggtaaccgaa
    15361 cagcgtttcg caatttcaac cgtgtttgcc aatgcactcg gtaaatcggc aaacagcttg
    15421 cacatttcct cttcagtacg gaaatattgt ttcggtgagt attttttcgg gcgtttcggg
    15481 tcgtctaggg tgtagctgtc gtgaatggca acccgaattt cgtgtgcgtc aaagtcatct
    15541 tctttcaaga agacaacatc atttaccgcc actaacggaa ttgcattttt ttgtgaaaat
    15601 tcgaccgctt gtttgatata gcgttcttcg tctgcccgtc cggtacggca aacggaaagg
    15661 taaaaatgat tcgggtaata ttgctgataa aaagctaatt tttcttcagc ttcttgtcgg
    15721 ttttctttga gtaaggcttt acccacatcg cccattcgcc cgccggaaag aatgatgatg
    15781 ccctcattca gctctgctaa ccattcacgt tccaccatcg gaaattccac atagccttgc
    15841 tgataggctt tggacaaaat ttgggtaata ttatggtagc ctttgttgtt cttcgccagt
    15901 aatgtcagct caaaataatc ttcattgccg ctctcggttc taacataaac atctgccccg
    15961 ataatcggct taatccctgc tcccaatgct tcgccataga atttcaccaa cccgcaaaag
    16021 tttataaaat ccgttaagcc cattgccacc atattattag cggcagcggt tttaactaag
    16081 gattttacct tagctaaacc attaatcatt gagaaatcac tgtgaacttt taaatgaacg
    16141 aaacgacaat ctgacatagg aatataatct aagtaaagaa gtttcccctc tttagtaaag
    16201 actgtcaggt tctaaaaagt gaagccttct gtgaataatc ccgttgggcg aatgttattc
    16261 gcccctacaa acgagcatta ttcttgctca gagttacatt taaaatccga atgtaggggc
    16321 gaattacatt cgccctttca gaacctaaca accctgcttt atctaaagaa gggagttaaa
    16381 attaatcacg ttttttgctt aacagccacc aaacgatgat caaacagagt aggcttggaa
    16441 ttaatgctcc aaccggtata ggtaaccaag tggcaattaa gcttaaattg ccaaacacaa
    16501 tatttgccac atagaacata aagccggcaa caataccaat cacaattttc gcccccatcg
    16561 tactactacg aagcggcccg aaaataaagg agatcgcaag tagcatcatc accgccattg
    16621 agattggttg gaatactttt cgccagaagg tgatctcaaa acgtttcgga tcttgtccgg
    16681 tatcttttaa gaagccgaca taatctgcca agcctgaaat cgagagcgac tccggtttga
    16741 gtgaaacaat gcctaatttg ctaggggtta aactggtttg ccaaacttga tctggctgtt
    16801 tagcttgctg gatctgattt tctcccacag tcgatttttc cactttagat agcacccagc
    16861 ctttttcatc actgtaattc gcagttcggg cttttaaaac agattgcaat tcacgtttgt
    16921 tttgtccttc gccgaattga taaatcagta cgttatctaa gcttttttca tttttaatat
    16981 gattaatata gataaatgaa ttgccatctt tcgcccaaaa cccgtctttt gtggcaagca
    17041 ttgagccgcc actttgggca atcgaacgca tattacgggc aaactgctcg gtttgtggca
    17101 cgccccattc gccgataatc atcgtaaaaa tgactaacgg taaggcagtt ttcatcacgg
    17161 ctaaaccaat gcggaaacgg gaaaaaccgg aggcttgcat caccaccaat tcactaaggc
    17221 tcgctaggtt gcctaaaccg agtaatgagc caagtaatgc cgcaatcggg aaaaaggttt
    17281 cgatatctcg tggaatagtt aaaaaagtat agtatgccgc ttttaagcca tcgtaagatc
    17341 cacgtcctac atcacgaaac tcttccacaa atttaataat cgccccaagc ccaatcaaca
    17401 taaacagggt taaaaaaatc gcggataaaa tcgttttgcc gatgtagcgt tctaaaatat
    17461 tcattgagaa aaattgcatt atgccaccgc cttattggtt aatttttttg caccaaattg
    17521 atagcgtaac ttagacataa atttactatc ccacgcattt aaaataacac ctaaaactaa
    17581 aaaggcaact gataccaacg gcattaacac ttccgcattc aacttgcctg atgcccctga
    17641 cgattttagc gagctttgta gtaagaaata gattaaataa agcaataacg ccggcagtag
    17701 tttagcaaaa cgcccttgac gagggtttac actactcatt ggcaccgcta ataatgccat
    17761 taacggtaca gctaaaatca aagcaagccg ccaatgaagc tcggcttttg cttccggcgt
    17821 tttggtttcc attaatttct tgaaatcggc tcgttgcact aatttctcat cagattcaac
    17881 gtcttgatag cctaaataag cagaataatt ctcaaaatgt gaaatacgga aatcggcact
    17941 ttgtggtgta ccttcaaaac gcttgctctc tgccaaggtt aagacttgat ccccatttgg
    18001 caaaccttgc aacgtgccgg attcagcaac aaccactgaa ggtttgtttt tcttctgctg
    18061 ttccggctgg aaaacgtaga tatcatttag actgttattt tcaattttat caataaataa
    18121 cacatagcca ccggcagaca taaattgtcc ggccgaaaga gccgcaaaac gtgggttggc
    18181 tttcgcttcc gctaacattt cactctgttt attaattgcc caaggcgtaa gccaaaacac
    18241 gttataaacc gctaatgcag tggtaaaaat cgagagaaac atcgccactt taaccaatag
    18301 cccttgcccg ataccacaag cccgcattac ggtaatttca ctttcggcat aaaaccgccc
    18361 gagggttaat aacaaggcga taaacagtga gagtggcagc attaattgtg ccattgtcgg
    18421 catacctaag cctaataagc tcaccactaa atctgccggt actttaccac tcacagcaga
    18481 acttagaaca cgcactaatt gctgacaaaa aaagatcagt aataagataa acaatatcgc
    18541 caattggctt ttaaatatct ctttggttaa atatcggctt aagatcacgt tttttctcta
    18601 taacatttac aaatctgaat accgctaaac acaagcggtc tatttttgtt aattttttgc
    18661 aaagagcgca aaataactta ttcgaatcgc taataatacc tttttcatac aaaaaaatca
    18721 cctatagaaa atatcacgca cggcaaaacc gtgcgtaagt attattgttt tttcgatttt
    18781 ttcgatgatg ttgctttatg agcttcaaga attaatttct taccttggct atcttcaatt
    18841 tcaatcttag gtggtgcttc cgtattttga tgaaggatag ctataatatt ttcaccttgt
    18901 gcaatatctt caaagtttcc tttcacacgt aacttagccg catcaacact agtgtcaaat
    18961 actaagaatg tacctaatgc ggtaactcta atatttttaa gccctatatt gtccttcgtt
    19021 accgttttat attgaggtgc ttttttccct tttgcagcca taatcttctc ttgattagtc
    19081 gcaatattaa gaatattttg aactttagtc gcttctgctg tagattgtgc ctgttctgtt
    19141 aaatttggtt ctccatcaaa aataacatcc ccaacaaatt gcacctcttt aggctcattt
    19201 tgcaataatg gtgcaacgtc tttagctgaa acaaccaaaa ataaccgttc acctattttt
    19261 tcaaaacgga catcaatatt ggttaattgt gattcaattt gttcattaat tgtcttgatc
    19321 gcagtttctg tctcattttg aagcgatatt ttacgtgtaa tatcaacatc ataagcaata
    19381 aaaccaactt ttaaacgttg tgataactgc tgaagtaaat tgcccacatt tccatcataa
    19441 gaaagacgta actttgcctg ctcatagcga ctaatttgag catcatcatt agcgaaaata
    19501 gtgttttgag tccctaagcc gattagacca acaacaaacg ttttacccc
//
LOCUS       DANLXB010000023        19363 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLXB010000023 DANLXB010000000
VERSION     DANLXB010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19363
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(52..1092)
                     /locus_tag="PXD41_000537"
     CDS             complement(52..1092)
                     /locus_tag="PXD41_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6288102.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1181..1771)
                     /locus_tag="PXD41_000538"
     CDS             complement(1181..1771)
                     /locus_tag="PXD41_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL6288103.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXD41_000539"
     CDS             complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXD41_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL6288104.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXD41_000540"
     CDS             complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXD41_000540"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL6288105.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4331..4942
                     /locus_tag="PXD41_000541"
     CDS             4331..4942
                     /locus_tag="PXD41_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL6288106.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4946..6430
                     /locus_tag="PXD41_000542"
     CDS             4946..6430
                     /locus_tag="PXD41_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL6288107.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6431..6958
                     /gene="hemG"
                     /locus_tag="PXD41_000543"
     CDS             6431..6958
                     /gene="hemG"
                     /locus_tag="PXD41_000543"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL6288108.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7090..7485
                     /gene="mscL"
                     /locus_tag="PXD41_000544"
     CDS             7090..7485
                     /gene="mscL"
                     /locus_tag="PXD41_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL6288109.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXD41_000545"
     CDS             complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXD41_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL6288110.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
     gene            8125..9699
                     /gene="murJ"
                     /locus_tag="PXD41_000546"
     CDS             8125..9699
                     /gene="murJ"
                     /locus_tag="PXD41_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL6288111.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
     gene            9701..10168
                     /locus_tag="PXD41_000547"
     CDS             9701..10168
                     /locus_tag="PXD41_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL6288112.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(10233..12242)
                     /locus_tag="PXD41_000548"
     CDS             complement(10233..12242)
                     /locus_tag="PXD41_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL6288113.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            12434..12969
                     /locus_tag="PXD41_000549"
                     /pseudo
     CDS             12434..12969
                     /locus_tag="PXD41_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            12997..13608
                     /locus_tag="PXD41_000550"
     CDS             12997..13608
                     /locus_tag="PXD41_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288114.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(13619..14509)
                     /gene="rarD"
                     /locus_tag="PXD41_000551"
     CDS             complement(13619..14509)
                     /gene="rarD"
                     /locus_tag="PXD41_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6288115.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(14591..15574)
                     /gene="epmA"
                     /locus_tag="PXD41_000552"
     CDS             complement(14591..15574)
                     /gene="epmA"
                     /locus_tag="PXD41_000552"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL6288116.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            15907..17709
                     /gene="frdA"
                     /locus_tag="PXD41_000553"
     CDS             15907..17709
                     /gene="frdA"
                     /locus_tag="PXD41_000553"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL6288117.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            17725..18456
                     /locus_tag="PXD41_000554"
     CDS             17725..18456
                     /locus_tag="PXD41_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL6288118.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            18466..18858
                     /gene="frdC"
                     /locus_tag="PXD41_000555"
     CDS             18466..18858
                     /gene="frdC"
                     /locus_tag="PXD41_000555"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL6288119.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            18872..19219
                     /gene="frdD"
                     /locus_tag="PXD41_000556"
     CDS             18872..19219
                     /gene="frdD"
                     /locus_tag="PXD41_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL6288120.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
BASE COUNT         5483 a         3809 c         4333 g         5738 t
ORIGIN      
        1 taagtttcca cgcttaatag ttacatcgtt taagttgagc atagaaaatc cttatcgttt
       61 cgccaataca atccagaaaa agaactgcac accgactaat gccgtaataa taccgaccgg
      121 aaataatgcg cccggcacaa ggctttttga tagcacggat gacatcgata aaaatgccgc
      181 acccactaac attgaaccgg gcaggaaaaa gcgttggtct tcgcctagca acattcgggc
      241 aatatgcggg gcaactaagc caataaagcc gataatgcct acaaagctaa tgcaggtggc
      301 cgtcattaca gacacaatca gcaatgtttt cattcgtaac caagttaagt taatgcctaa
      361 gctcaatgct cgagcttcgc ccaaacgcaa ggcagttaat ttccacgcat ctttgaataa
      421 taataaaata cagactgtag ttacgccaaa ggcaattgag atagtctgcc aagtagcttt
      481 agttaaatta ccgaatagcc aaaacagaat ttgttgggat acctcaggtg cagaaataaa
      541 ttgcaccaat gacagtaaag actgaaataa aaacaataag gcaattccta ccagcactaa
      601 tattgccgag ctaaaacgtc ctaaagagga aaaggcaaat aaaatggcgg aagaaaatag
      661 tgtcatcaca aaagccccga caggtacaga aatttcggtg ggtaaaccaa atccaccaaa
      721 ggcaatcaca atcgaagcac caaagccggc tgcagctgct aaacccaatg tataagggct
      781 tgccattgga ttattaagca aagtttgaat ttcagctccg ccaacaccaa gtgctgctcc
      841 aaccaccaat gccattattg ccattggtaa gcgtagctca tagacaatca ctttggtggt
      901 ttcttcaatt tcgcctaatt ggaataaggc tttccaaact tcattaaacg gaagcaggga
      961 agggcctgtc ataatatcga aaatgaggct gagtaaacaa atgagtaaga aaaagagtaa
     1021 taaaaaactg cgtttctttt caatagttcg gtgcttttta gctatttgtt ggggagagag
     1081 cgttgtttgc ataaaaatgt aatgtttgag aattattatc agacaggata agagaaaaga
     1141 tcgataaatt caagaatatc caagataccg actaaagtat tcaactaagt tctcgagtag
     1201 ccctgtcttt tacagtaaaa aactcctgaa tagcggcttc ttctaaaaga gtataattct
     1261 gccaaatttc ggttacagca tttcttaaaa tctcaccttt cttaactctt gatgacattc
     1321 ccaagaatac ctgttctaag aaatctaaat cggcataatg agttaatgct tttcgtgact
     1381 gtaaccagtt aaacatcggc acaaattgtt caggaaaaat cgtgcgttgt tgttcgattt
     1441 gctgaaagat ctgtgcttgt acctcattta aatctttagc aaataaccgt tggaaatgtt
     1501 tagcgagaaa atggtcgatc ataatatccg acacaatgcc tttataacgc ccgaatgtgc
     1561 cttggagtaa ttgggttgtg aggctgtccg gtcggtccga aatcttatca atcgagcggt
     1621 gtaacaccac accgcttttt aagttatccg ctaaattgag atgcggaatt aaacctttat
     1681 agaaatcacc ggcaaagttg ccatataggg tctgttgctt ggtttgggtg tcaatttcaa
     1741 gtgaaatcag cgaatgggta agaaaattca tttatgctcc aagtgcagtt tggtgatact
     1801 caaacccaaa ctcgttggtt tcgcctttcg gtacaaactc aaataaatgc gtaatgcaat
     1861 ttggagcatc gctgtcttgg tgcgaaacaa aaagtagttg cgtttggctg ttagtcacta
     1921 attgttcaat gaactgtttg actaatttgc ggttaatgcc gtctaaacct tgtaacggtt
     1981 cgtctagaat cagaattgat gggtgtttca ccattgctcg ggtaatcaaa agtaagcgtt
     2041 gttgccccca cgagagagag cgaaacggct ttttggcaac attgcttaaa ttgaggcgtt
     2101 ccaaccattc cattgctttt aattgcaagg cattcggcac ttgttgatac acgccgatgc
     2161 tgtcaaaaaa gccagaaaga atgacctcca ttgcggagca atttacccga taatccatat
     2221 gcaactggct gctgacatag ccgatatttt tcttaatatc ccaaatggtt tcgccacttc
     2281 cccgttgttt gccaaatagt cggactttat tggcataaga ttgtgggtga tcgccggtga
     2341 taatcgaaag caaggtcgat ttcccagctc cattcgggcc tttaatccac cagtgttgtt
     2401 taggctgaac cgtccaactt aggttatcta aaatcttctt ctccccatat tgaatattca
     2461 cattttccaa ctcaaacgga ttgatgtttt ccggcaggct gagtagcgga gctgcactat
     2521 caggcagtgg cacattgaca ttctcttctg caaattttag ctgagaatag accgcttgtt
     2581 gttcaatttc tgctcgctct ccttgcagaa ttaatgataa attatctaat aactcaatat
     2641 gattggcagc atcaggaata tcgttaaaac gatttacaat cagcactaac gccattttgc
     2701 tttgtagttc ggcaatcagt tgttgccaat attgcaccga ctgctgatcc agcccttcaa
     2761 acggttcgtc taaaatgaat aaatccggct cgctcactaa catttggcaa aatagcactt
     2821 tgcggctttc accggtggaa aggtgcataa acgggcgttc aagcagatgt tgaatatgca
     2881 atttgtgggc atattcctca cataacgcct cttttggact gccatttaaa attacttgtc
     2941 gtgcggttaa gccgaaatca tcgggcgaga cactatcgtt gttccgatct ttgaaaatct
     3001 gctccaacat tttttgttgt tgctcgaaag agaggagctg aatatgttgg aacgaattac
     3061 catagtcgcc ggaatagagc gagattttac cctgtaaagc gagtgaaaaa gttgttttgc
     3121 ctgaaccgtt tccgtctacg accacctaaa agtcattggg ttggatctgt aaggcgtcaa
     3181 tcgtgagttt atgttgttta accagtgaaa atcgggcatt ggttattgta agtgaaggct
     3241 gtgtttgcat atatttcccg ttttaactta gttgtgtccc gctgacgaac caatccgctc
     3301 gaccgtttaa gaaatcttgc accgacattg gttttttacc cgccggttga agttgggtaa
     3361 tattcagcac gccctgttgg gtggcaattt gaatcccggt tttatccaca ttaattaccg
     3421 tgccggctgc tttttcttgg tgaggtaaca ccgtggcttg gtgaattttg atactttgct
     3481 caacgccatc aacggttaag gttaaaaaac taaacggcca agggttaaaa gctcggatat
     3541 tgcgttccag ttgaactgct gggagttgcc aatccaattt agcttcttct ttggaaagtt
     3601 tctcggcgta attggacagt gcttcatctt gtttttccgc tttgaatgtg tggttggcta
     3661 aaccgtttaa cacctcaagc aatgccagag gggcaagttc tgccagtttg gcatacaagg
     3721 aggcggaggt ttcattcggc tcaatcgggg ttgtgacttt atgtaacata tcaccggtgt
     3781 ctaagccaac gtccattagc ataatggtta cgccggtttc tgtatcacct gcccaaatcg
     3841 aacgctgaat cggagctgct ccacgccagc gaggtagtag cgaaccgtgt acgtttaggc
     3901 aaccatattt aggagcattc aatactgctt caggtagaat taagccgtaa gctaccacca
     3961 ccatcacatc ggcatttagg gctttcagtt cagcttgagc ctcttcctta cgcagggatt
     4021 tgggttggta aacaggaatg ttgtgagctt cggccagctg ttttaccggg ctggcttgca
     4081 gttttttgcc tcgcccggca ggtttatccg gctgagtata aaccgcaatc acgttatgct
     4141 cggaatctaa taaggcttgt aaatgttgag cggcaaaatc aggcgtgccg gcaaaaataa
     4201 tattgagttt tgacatattt tttattcgtt caagttatca atgaaagact tattaaacca
     4261 ttaaacagca caaataaaaa gtggcttgaa tatggtatca ttgccacatt caagataaga
     4321 gaatcaaaca atggaatttt ttatccccaa agcggataca atttttgaag aagagattaa
     4381 aaaaagccga tttatcacct accttcgcca tactgagggt atggagcagg ccaaggcatt
     4441 ttggcaggag ctgaaaattc agcatccgca cgcacgccat tggtgttggg caacggtggc
     4501 aggcttgccg aatgattcgc aacaatacgg cttttcggat gatggagaac cgtctggtac
     4561 agcaggtaag ccaatgctca attatttgct tgggtcaggc ttgggggaaa ttacagcggt
     4621 ggtggttcgc tactacggtg gtatccagct tggcaccggc ggcttggtga aagcctatgg
     4681 caatggggtg caacaggcgt tattgcagtt ggagcggatt cgcaaagttt tgcgaaaaaa
     4741 ctaccgcttg caatgtgaat atgagcagtt taataccatt tctcatctca ttagcgagaa
     4801 agatattgtg attgtcgagc aactttttag cgataaagtg gatttgttgc tggcatttaa
     4861 cccgagcgag gttgaggcct ttgcagatga attaacccaa cgcttttcgg gcaagctcgc
     4921 attaataaaa gaagaaatct agtctatgca atttttttcc attattcgta ttgttggcat
     4981 tttggtgatg tgtttttcat tcacaatgct tgtgccggca acggtcgccc taatttatgg
     5041 cgatggcggt gggcgggcgt ttttagaagc cttcgctctg aattttatgg tcggtacgct
     5101 gctttggtgg ctgtgccgtg acaacaaaaa cgagctacgt tcccgtgagg gctttttgat
     5161 tgtagtactg ttttgggtgg tgctgggttt gctcggggct gtgcctttta ttattttgga
     5221 aaaccccgat ttaaacgtgg cggaatccat ttttgaatcc ttttccggct taactacaac
     5281 gggtgcaacc gtcatcaccg gcttagatag cttgcccaaa gcgattttat tctaccgcca
     5341 atttttgcaa tggctagggg gaatggggat cattgtgtta gcggttgcga ttattccgct
     5401 gttaggcatt ggtggaatgc aactttatcg tgcggaaatg cccggaccgc tcaaagagca
     5461 gaaaatgcga cctcgcattg cggaaacggc aaaagcgttg tggctgattt atctcagcct
     5521 gacgattctg tgtgcggtcg cattttggct cgccggaatg acggtgtttg atgccatttc
     5581 gcatagcttt tccacggttt cgattggcgg attttctacc cacgatgcca gcatcggcta
     5641 ttttaataat gcggcaatta gctatattac cgtgtttttc ctgctacttt ctgcctgcaa
     5701 ctttgcattg cattttgcgg tgattgatcg catacgagat gcacaatcac gcaaaaaagg
     5761 gggtatttta agccgcttgt attggggcga ttacgagttt cgttttttct tgatggtgca
     5821 gttagggctt ttcttggttt gtaccttggt gttagtgggt tacggttatt tcgataatac
     5881 ctctgttacg attgagcaag cgttgtttca atcggtgtcc atttccacca cggccggctt
     5941 tactaccaat gattttagcc aatggagttc gtttttaccc acgctgttgg tgctgtcttc
     6001 atttatcggt ggttgtgccg gctcaaccgg tggcggcttg aaagtgattc gggtgttgct
     6061 gctttattta caaagtaaac gtgaaatcca ccgctacatt caccccaatg tgattcaacc
     6121 gattaaatta ggcaaccacg ttttatcgga acgggtggtt gatggtattt gggcgttttt
     6181 ctcggcgtac tttttcgtgt tcgtgatctg ctggcttgct accatcgctt gtggaatgga
     6241 aacctttgat gctctaaatg cggtaattgc ctcactaaat aatctaggtc ctgcattagg
     6301 gagcgtgagc agcaatttca cccaagtgcc ggacagtgcc aagttagtgc tgacttttgc
     6361 aatggtatgc ggacgtctgg aagtgtttac cttgctggtg attttaagcc ctgttttttg
     6421 gaaagattaa atgaaaacct taattctcta ttttacgacc gatggtcaaa ccaaaaaaat
     6481 tgccgaacga ttggcggacg tgattactca cgaagtcgag ctgatttcgc taaaagatca
     6541 agcggtcgat tttgccgaaa aaattgcaaa tgccgaccaa attgtcatcg gtgcttcaat
     6601 tcgctatggg cattttaacc cgttggttta tcagtttgtg gaacagcatt atccggcatt
     6661 aaacgccaag aaaactgcct tttacggtgt gaatttgacc gctcgcaaag ataatcgaaa
     6721 cacgcctgaa accaatactt atgtgcgtaa atttttagct aaagtgaaat ggaaaccaac
     6781 ccacattgag gtaattgctg gggcattact ttacctacgc tataagccat tcgaccgatt
     6841 gatgattcgc tttattatga aaattaccaa aggcgaaacc gatacctcca aagaatatga
     6901 gtacaccgat tggcagcagg tggagaattt tggcaaatta ttagccaatc agttataatc
     6961 aaactgatct aaatcaaaaa aatgtaaatt tatttaaatg ttgtagaaat tttaaagatt
     7021 ttgattataa tcgccagccc acgttcttgc gaagaccgtg tttaatcatt gaatgaaagg
     7081 aaagccccct tgagtatttt aaaagagttc cgtgaatttg cggtaaaagg taatgttgtt
     7141 gatatggctg tcggtgtgat tatcggcggt gcattcggta aaattgtttc ttcattagtt
     7201 agcgatgttg taatgccacc tatcggttgg ttaatcggtg gcgtggattt caaagattta
     7261 gccattgaaa tcgccccggc aaaagaaggt gcggaagcag tgatgttaaa atacggtgca
     7321 tttatccaaa acgtatttga tttcttaatt atcgcacttg cggtattcgg tatggtgaaa
     7381 gtgattaact cactgaaaaa agctccagtt gtagaagaag ctcctgcaga gccaacagcg
     7441 gaagagaaat tattaactga aatccgtgat ttattgaaaa aataattaac tgattttgaa
     7501 acaagggcta ttttagaata tctagaatag ccctttgtgt tatggttaaa aagaaaaaaa
     7561 ccaacataaa gtcggttttt ttcatatctg ttcgatatta cgctaatttt ttgatttgcg
     7621 ctgctaattt agatttgtgg ttagccgctt tgttagcgtg gattaagttt ttagatgcca
     7681 tacggtctac aactttttgc atttcaacga aagccgtttg agctgctgct ttatcgcctg
     7741 ctgctactgc tgcatatact tttttgatga atgtacgcat cattgagcgt tggcttgcgt
     7801 tgtgttggcg gcgtttttca gattgaaccg cacgtttttt tgctgacttg atattagcca
     7861 aggtcaaact cctaaaatat ctgtgtaaaa attagatata aacaaaatcg ttgtttatat
     7921 tgcctatcga tagtttttaa ttcattttca acgagacacg tgcttgaaaa taacaccgtt
     7981 tttctgatag aaaacgatag ggcgagattt taacagtttt tttctgattt tcctataaca
     8041 aactgctaaa attatgatcg atttttagga tcagactaca agcggtctga tttttcaata
     8101 attttactaa tattactctt tattatgagc aaaaaacttt taagatcagg aatgatcgta
     8161 agctttatga ccttaatttc tcgcatactc ggtttgattc gagacattgt ggtggcaacc
     8221 attttaggca caggcgtgag tgccgatatt ttcctgtttg ccaaccgtat tcccaatttt
     8281 cttcgccgtt tgtttgccga aggggcattt tctaaagcct ttgtgccggt gttggcggaa
     8341 tataatgcgg ataacgatcc aaacaaaacg agagaattta ttgccaaagt atcgggtaca
     8401 ttaggaggtt tggtaactgt tgttaccctt gtggcaatga ttgcctcgcc tgtggttgcc
     8461 gctctttttg gtacaggttg gtttttagat tggctttacg acgggccaaa tgccgaaaaa
     8521 ttcacccaag cctctttttt gctcaaaatc actttccctt atttgtggtt tattaccttt
     8581 gtggcgttat ccggtgcggt gttaaatacc atcggtaagt ttggggtgat ggcattttcc
     8641 ccggtgttgc tgaatgtggc gattatcgcg gtagcgttat ggggcagaga ttatttcgat
     8701 tccccggata ttgccttagc gtggggggta tttttaggcg gcttattgca atttttattc
     8761 caaattccat ttatgaaaaa agagggctta ctggttaagc caaaatgggc gtggaaagac
     8821 gaaggtgtca ctaaagtccg taaattaatg attccggctt tatttggcgt ttccgttacc
     8881 cagctaaatt tactgctaaa ccaagtgatt gcctcgtttt tgattaccgg ctcgattagt
     8941 tggatgtatt atgccgaccg cttaattgaa tttccgctcg gtttatttgg aattgcgatt
     9001 tccaccgtcg tgctgccaag cctttcccgt attgcgaaaa acaaagaact cactgaaatc
     9061 caacgtggag aacactttca aaacacaatg gattgggggg tgagaatggt gctgttgctc
     9121 ggcattccgg caatgatcgg tatggcagtg ctggctcagc cgattattat gacaatgttt
     9181 atgcggggta aatttggttt tgaagatgtg ctggcaacct cttatccact ttgggtaatg
     9241 tgcttggggt taaacagcta tatgttgatt agcgtgctgg caaacggttt ttatgccaac
     9301 caaaacacca aaacaccggt aaaagttggg attattgccg ccttaagtaa tatttgcttt
     9361 ggcttggcgt ttgctccgtt tttgggatac attggtttag cgttagcttc tgcgtgttcg
     9421 gcattagtga atgtgagctt gctgtatgtg aatctctcaa aaaatggtta ctataaagta
     9481 agccataaaa ccgtgctttt tgtgttgaaa ctattcatcg ccgcttgtgt aatgggggcg
     9541 ttggttgcct atttcacgcc tgagattgaa ctttgggcat taatgacaat gtggcagaaa
     9601 gtgtattggc tgatttggct gatgatctta gccggcggta gttattttgc ctctattttg
     9661 gtattaggca ttcgtaaaaa agatttccgc tcggcataaa atgaaatcat taaaactgaa
     9721 aatcccgccg ccggcttggt tcttgctttg tgccgcttta atgtggctgg tagctcaata
     9781 tgtgccggtg agcttgccga attatcagca tacagccata ttttttagcg gtttagctgt
     9841 ggcgataatt ggcggagcgg ttgccgtctc ggcactttgg gtcatacacc aagcgaaaac
     9901 gacatacagt ccttttcgac cacaacatac cgctaaattg gtcacttggg gcatttaccg
     9961 caaaagccga aacccaatgt atctttcgtt actattaggt ttgattgcgt gggcattatg
    10021 gttgggggca atgttggcgt ggctggtttt accgctgttt gtatggttga taacctattt
    10081 ccaaatcaag ccggaagagc aaattttagc ccaaaaattc ggcacacatt atgccaaata
    10141 ttgcaaccaa gtaaggcgtt ggctttaaat gcaagcggtg agattttgtt ggaaatttgc
    10201 aaatttttcc gaaaatctca ccgcttgtgg ggttagtgat tgaaatcagc cgtcattaag
    10261 tcgtgcgagt tgtccatcgc taaattgata aagcgttcat actgttgcag cacgtcggca
    10321 atcaactctt ctttggtcat atattgcaca tcataacctt tccgcccgtc taagaaataa
    10381 gtaatcggct cgtaaatggt attttgctca atgttcggta ggttgtcgtc acctaccacc
    10441 aaatccgata attcccgtgg cacactttca atgccgtaaa tgaaattgcg taaattttct
    10501 ttcaccactt caaactctaa tttcgggttt tgttcgttgg tgaaattcat tttagcgatt
    10561 aagccatagc tttcaaattc ctcgataagt tctaaaaatg ctggtctggc aactttaata
    10621 aagaagtgac ggacatcttg cttattgctt gggttgatga ttttctccaa gcgttgtttc
    10681 caatctttac ccgcccaatg ttggctacct tgcgagaatt ttttgttgaa gtattggtta
    10741 tctaccatta atcctttcca taagccgata cagagaatca gcataatgaa ggtaaatggt
    10801 aaggcgataa tcagtgtcat tgtttgcaga gaagccaagc cacccgaata gagtagtgat
    10861 aacgctaaga tggctaataa tgctccccaa agcacgcttt gccatttcgg tgcattttct
    10921 tcgccttgtg aagcaatgct gttgagaaca aaaatccccg agtcggcaga ggtgataaag
    10981 aaaatactga taacaatgac ggcaacgaaa gaggcaatag agccaaacgg taattgctca
    11041 aaaaaggtaa ataacagttg ttcggtattg ccgctgactt cagctaaagc accggcagtt
    11101 tgttgatcga accaaatggc agagctgccg aagctggtca tccataaaat gttaaacagc
    11161 gatggaacaa atagcacccc taaaataaat tcacgaatgg ttctgccttt agagatcttg
    11221 gcaataaaca aaccaacaaa tggcgcccaa gatgcccacc atgcccaata aaggaccgtc
    11281 cagccgctta gccagccttg atgttccggt tcataagcga aggtacggaa actcatctca
    11341 agcagcgagc taaaataata gcctaaattt tcggtgaagc ttgagaaaag taatagagtt
    11401 gggccggtga ttatcacaaa aataagtagc aatccggcta atgtgagatt gatttcactt
    11461 aagattttaa cccctttgcc tacgcccgaa acggcagata acacggcaag agccattgct
    11521 actgttacga taatcgcaag aacagtaaaa ttgctctgtt caattaaacc tagattgtta
    11581 aagccagcac tgacctgcat caccccaaag ccaagtgtag tcgttaaacc gaaaatcgtg
    11641 ctacaaaggg caataatatc aattaaatgc ccccagaagc ctgaaatacg atgttttagt
    11701 aagggataaa atccggaacg aatagtgagt gctaacttat atctgaagcc aaaataagca
    11761 agagctaagg caatcacacc ataaattgcc caagcgtgaa taccccaatg atagaacgtt
    11821 gtcatcatcg cttctttcat acgctccggc tcagttaaat tttgttggac gggtttaagg
    11881 taatgcaaaa taggttctgc taccccaaaa tacattaacc cgatccccat tccggcggcg
    11941 aataacatcg caatccaaga gccaaaacca aattcaggct catcggtatc tgcccctaat
    12001 ttaatatcac ccaatcggct gaaagagaga aaaattagaa acaggaaaaa gatagagcct
    12061 gcaaaaatat agaaccagct aaaatgttgg aagagactat ttttgatggt atcaagtgag
    12121 gtttgtgctt gctgtggaaa gatgatacag aaaacggcaa caaagctgac aaagagtaaa
    12181 ctcggtagga aaatcggtac cctaaaggta cttcctgtgt ttaatttttt gattaaatcc
    12241 aatgctattt cctctatttt tgaatggtta gaggcttgaa tatagcaaaa agatataaaa
    12301 ataacaaatt taagacgtat tggtaataat attgcaacct aatgggtttg gtaaaaaaat
    12361 cgggaaattt gaccgcttgc acattcatta tttgcgagta gaatattttt catttataaa
    12421 aaacgaataa agaatgcaca cacaacataa cgctcaaaaa atggttttgc ccattttact
    12481 gctgatttcc ctttctcatt tgttgaatga tttagttcaa gcagtaatgg tttcgatcta
    12541 tccaatgcta aaagaaaatt accaactgag ttttgctcaa attggtatga tttcactcat
    12601 ttatcaaatt accgcatcta ttattcagcc gggtattggg ctttataccg atacccaaaa
    12661 ccgaatttat tgcccgtcag tatgctgatt acgcttcttt ccgtgatttt acttgccttt
    12721 tcgccgaatt ttggcgtgtt actgatagcc gctgcgttaa tggggatagg ctctgccatt
    12781 tttcaccctg aagcctctcg ggtggctcga atggcatcgg gcggtaaatt tggtacagct
    12841 cagtcgcttt tccaagtagg tggaaacagt ggatcggcgt taggtccgct cttagttgca
    12901 ttatttattg tgccgttagg gcaaagtgcg gtgatttggg ttgttgcatt tgtattattg
    12961 gcattatgat gggttttata taaagtaagc cgttgggtga aatatgaagc caaaccgctc
    13021 attatttcac caaaccatat tcaacaacgc ttacacggta aattattagc cagagcatta
    13081 ttaattatcg ctttattgat gttagcgaaa tttatttata ttgcgagcct cagtaactat
    13141 ttcacctttt atttaatgga aaaattccaa ctcaatatag caatggcaca gctctctcta
    13201 tttacctttt taggtgcagt tgctttaggc gcttttgtcg gcgggccgat tggcgataag
    13261 attggacgaa atgcggtgat ttggttctct ttcttaggta tggcaccttt tgctttgttg
    13321 ttgcctcacg cagatctctt ttggacgatt gtgtgtgcga tttttgccgg ttttattatg
    13381 tcatcagcgt tctccgctat ggtggtttat gctcaagaag ccgtaccagg cagagtaggg
    13441 ctgatttccg gcacaatgtt cggtttaatg tttggtattg gcggcttaag tgccgccgta
    13501 ttgggttttt ttgcggatga atatggcttg gagagtattt ttaaagcctg tgcctatttg
    13561 ccactacttg gttttgctgc attagggcta ccaaaacgaa atatttaacg ttttattttt
    13621 agcgtttgac accagctttt ttcataccca ataagaaaac ccccacccca atccaaacca
    13681 gaatgtagcc tacagcacgt tcggcggaaa gtgtctcatt aaaaatcagc acaccgcata
    13741 aaaattgcag ggtaggtgaa atatattgca gcataccgag tagcgacatt gaaatgcgtc
    13801 ttgcacccat tgcaaaccat agcaatggta aggtagtggc aatgccggag cagagtagca
    13861 ctgccatttg taaaggattg agttcactga ataccaaaat gttttggtgg taacaaaagc
    13921 agagataggt gatggcaaaa ggcgacatca gcaaagtttc taacgccaaa ccagacaaag
    13981 gttccattgg ggcaagttta cgaatcagcc cgtaaataca gaaactggcg gctagaatca
    14041 atgcgaccca cggaatttgt ccggcaggaa tagcaagcca taaaatgccg ctaattgcaa
    14101 acagcagagc caataattgg gctttattca gctgctcttt tagaataagc ctaccgacaa
    14161 acacgttgaa aatggggttg ataaaataac ctagactggc atctaaaata tgctcattga
    14221 cgattgccca taagtaaacc agccagttca cgccaatcat aaaagaagaa agcacgaaca
    14281 gcccgagtac ctttggctgt ttaaaggcat taataaccgc tcgcccttgt tggaaaatca
    14341 gcagcagaaa cacagcaaat agggcagacc aaagcacccg ttgagccaaa atttgctcgg
    14401 caggcattcc cgattggttg atcggatacc aataaatcgg aaaggttccc caagttaagt
    14461 agcacagtag ggcatagtgc caaccctgta atttgcctga aatattcatt ttgctttcct
    14521 aaacgagtgt acaagcggtc atatttgtcg atttttttgc aaattgcaaa tcacaaaacg
    14581 gcataaaaaa ttaggctttt tcaatgccga aagaaataac ctcttcaatt ttttccgcat
    14641 ccattgccag cattaacagc ctatcaaccc caagggcgac acctgagcag tttggaaaac
    14701 ccgctttgag tgcggcaaga aaacgcacat ctagttgctg tggctccagc cccatttttt
    14761 cacgttgcag attatcttgc tcgaagcgat gaatttgctc atcagcatcg tctaattcgt
    14821 ggaagccgtt acagagttcc aagcctttgt agtaaaactc aaaacgttcg gcaacacggt
    14881 gatcttccga gctaatttga gctaatgccg cttgggtgga agggaaatga taaacggcag
    14941 ttggtctttc ttgcccgata ttggcttcga caacctcgct gaataaaaat tgtaacaagg
    15001 tgtcacgctg ttcatcatca tcacattgca agccgtgttt tcgggctttt tccacaagtt
    15061 gtgctttggt ggcagaaagc ggatctaatc cgacataggt ttggaacaca aattgatagc
    15121 tgaatgattc tgccggttcg cagtccaaaa tttgttgcag taaatcatcc acttcattga
    15181 ttaagcgata catatcaaaa tgcgggcgat accactccag catcgtaaat tcagggttgt
    15241 gtcgcttacc ggcttcctcg ttgcgaaata ctttacacag ttggaaaatc ggtccactcc
    15301 cagcagcaag tagtcgcttc atatgatatt ccgggctggt catcagatgg agtgttttcg
    15361 cctcagggga aaaaggcgat tgaaactgcg tattgaaagt cgaaagatga acgtctgtca
    15421 ccgaaaattc gcttaaaatc ggggtttcta cctctaaaag ccctcgatcg gtaaagaact
    15481 tgcggatttc cgtaatgatt tttgaacgtt ggatcaggtg aggaatagag gctgttggtt
    15541 gccaatcaat attatcgagt tgtaaattgt tcataaaaaa tgaccgcttg aaaatgtgag
    15601 gctattttag cctaaaaaag tgagttgccc tagttaccga tcaagaaaaa taaagagagg
    15661 gttttaactt ttttgcaaca aattaaattt tctcatttta aacattagaa attttctttc
    15721 tatcactgtc caattaagag ccattctcaa tacctttatg aagctttatt accttttttg
    15781 aggtagatca caaaattaca ttttttatgt tacaaatttg taaaaatagg ttatctcatt
    15841 gctcaaatag tggcacaata tgattacttt ttaatgaatt aagttattta actttcggag
    15901 tgcattatgc aaagtgttaa ttttgatgtc gcgattatag gtgccggtgg tggtggcttg
    15961 cgtgctgcta ttgcggcggc tgaagcaaat ccaaatctaa aaattgcttt aatttcaaaa
    16021 gtttacccaa tgcgtagcca tacggttgca gcagaaggtg gttcagcggc ggtaattaaa
    16081 gataccgact ctttcgacaa tcactttaat gataccgtcg gtggtggtga ctggttatgt
    16141 gagcaagata ttgtggagta ttttgtagag cattcgccga ttgaaatgac acaattagaa
    16201 cgctggggtt gcccttggag tcgtcgtgaa gacggtgaag tgaatgttcg ccgttttgga
    16261 ggaatgaaaa ttgagcgtac ttggtttgcg gcggataaaa ccggtttcca cattttgcat
    16321 actttgttcc aaacttcgat taaatatccg aatattgtgc gttttgatga gcattttgtg
    16381 ctggatattc tcaccgacaa cggcgaagct cgtggttgtg tggcaatgaa tatgatggaa
    16441 ggcacacttg ttcaaatcaa tgcaaatgca gttgtgattg caaccggtgg cggctgccgt
    16501 acttatcgct ttaacactaa cggcggtatt gtaaccggcg acggtttatc aatggcgtat
    16561 cgtcacggtg tggctttgcg tgatatggag ttcgtacaat atcacccaac aggtttgcca
    16621 aataccggta ttttgatgac agaaggttgt cgtggtgaag gtggtatttt agttaataaa
    16681 gatggctacc gttacctgca agattatggt ttaggaccgg aaacacctat cggcaaaccg
    16741 gaaaacaaat atatggaatt aggccctcgt gataaggttt cacaagcatt ctggcaagaa
    16801 tggcgtaaag ggaacacctt aaaaaccgca aaaggcgtgg acgtagttca cttagattta
    16861 cgccatttag gtgaaaaata tttacttgag cgtttaccgt ttatttgtga attagcgaaa
    16921 gcctatgaag gggtcgatcc ggctaaagcg ccgattcctg ttcgcccggt ggttcactac
    16981 acgatgggtg gtattgaagt ggatatgaat gcggaaacct caattaaagg cttattcgca
    17041 gtaggtgaat gtgcttcatc aggcttgcac ggtgcgaacc gtttgggttc taactcatta
    17101 gcagagcttg tggtgttcgg caaagttgcc ggtgaaaatg cggctcgccg tgcgttagaa
    17161 gtgactgctc gcaaccagcc acaaattgat gcacaagcaa aagatgtggt ggctcgcttg
    17221 cacgcattag cgaaccaaga gggtaatgaa tcttggtcgg atatccgtaa ccaaatgggt
    17281 gatgcgatgg aagaaggttg tggtatttac cgtacccaag aaagtatgga agcgactgta
    17341 aacaaaatcc aagagctaaa agagcgttat aaaaacatca gcgtaaaaga taaatcaagt
    17401 gtgtttaaca ctgatttact ctacaaaatt gaattaggct tcattttaga tgtggctcaa
    17461 tccattgctt gctctgcggt agagcgtaaa gaatctcgtg gggctcacca acgtttagac
    17521 tatgttgagc gtgatgatgt gaactactta aaacacacac aagcgtacta caatgcagag
    17581 ggtacaccga cgattaaata cagcgatgtg aaaatcacta aatcacaacc ggctaaacgt
    17641 gtgtatggtg cagaggctga agcccaagaa aaagtcaaaa aagcagcaga agctcaagca
    17701 caacaataga gaaggagtag taaaatggca aatttagata aaatgaccat cgaagtgcta
    17761 cgctacaacc ctgaatcaga tagcgagcca catttagaca gatatgaagt gccgtatgac
    17821 agccaaactt cacttttaga tgcattgggc ttcattaaag acgaattaga accggaactt
    17881 tcttatcgct ggtcttgccg tatggcgatt tgtggttctt gcggaatgat ggtaaacggt
    17941 aagccgaagt tagcttgtaa aacattcctg cgtgattaca gcggttttat gcgaattgag
    18001 ccgctggcga acttcccgat tgagcgtgac ttagtagtgg atttaagcca ctttattgat
    18061 agcatcgagg caattaaacc ttatattatt gataataaag caccggaagg acagcgtact
    18121 aaacaaacgc cggcacaatt agagaaatat cgtcaattct caatgtgtat caactgcggt
    18181 ttatgttatg cggcttgccc acaatttggt ttgaaccctg aatttatcgg acctgctgcg
    18241 attacattgg ctcaccgcta taacttggat aaccgtgata atggtcgtga agagcgtatg
    18301 aagctactca gcagcaaaaa cggtgtttgg agctgtactt tcgtgggtta ctgctcggaa
    18361 gtctgtccga aacacgtcgg ccctgcttcg gctgtaaacc aaggtaaact tgaaagtgcg
    18421 aaagattatg ttatctcaat gatcaaaccg agataggagg aagaaatgtc agcaacaaaa
    18481 cgtagacctt atgtaagggg aatgaaagcc agctggtgga aaaaactcga cttctataaa
    18541 atgtatatgg tgcgtgaagc tacctgtctt ccaactgttt ggttctgcat tgtattattt
    18601 tatggagcag ttgcgttaag taaaggaaca tttactaccg attttgtgga tttcttacaa
    18661 aatccgttag ttgttatcct aaacataatt tcattggcag caatgttata tcatgcggca
    18721 acactttttg tgatgacacc tgccgtcatg tccgtgatgg ttaaaggtaa acacttacca
    18781 gtctcggttg gaagaaatat tctttgggca gcaacaggcg taattagcgt aattgcatta
    18841 atcttggttt atatttaaga aggggaagaa aatgagtctt gatcaaaacc caaaacgttc
    18901 aaatgaaccg ccggtatggt tgctttttag tgctggggga atggtaagtg cattattttt
    18961 ccctgtggta atctttatta tcggtttatt actgccattc gggttagtat caccagataa
    19021 tatcatttcc tttgcccata cttggatcgg caagctcgct attatggtat tagcgatttt
    19081 ccctatgtgg gcaggaatgc accgtatcca tcatggatta cacgacctga aagttcacac
    19141 gccagcaggt aatgtgattt tctacggatt gtctatctta tacacaattc tagtaatcat
    19201 cgcagtcgtg cagatttaaa tgagaaagac catcttgtat aaagcagatg gtcttttcat
    19261 ttttaatatg ctaacaagcg gtcgaattta taagaaaatt tgcaaatatt agaaattttg
    19321 ccgataaaac gatcgttttg tattaaatat ctgcaaaaaa gat
//
LOCUS       DANLXB010000024        19106 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLXB010000024 DANLXB010000000
VERSION     DANLXB010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            36..986
                     /gene="tal"
                     /locus_tag="PXD41_000557"
     CDS             36..986
                     /gene="tal"
                     /locus_tag="PXD41_000557"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL6288121.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1048..1321)
                     /locus_tag="PXD41_000558"
                     /pseudo
     CDS             complement(1048..1321)
                     /locus_tag="PXD41_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(1352..1816)
                     /locus_tag="PXD41_000559"
     CDS             complement(1352..1816)
                     /locus_tag="PXD41_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6288122.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1837..2436)
                     /locus_tag="PXD41_000560"
     CDS             complement(1837..2436)
                     /locus_tag="PXD41_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6288123.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2470..4197
                     /gene="argS"
                     /locus_tag="PXD41_000561"
     CDS             2470..4197
                     /gene="argS"
                     /locus_tag="PXD41_000561"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL6288124.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4387..5553
                     /gene="cgtA"
                     /locus_tag="PXD41_000562"
     CDS             4387..5553
                     /gene="cgtA"
                     /locus_tag="PXD41_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL6288125.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            5638..6255
                     /locus_tag="PXD41_000563"
     CDS             5638..6255
                     /locus_tag="PXD41_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL6288126.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6302..8260)
                     /locus_tag="PXD41_000564"
     CDS             complement(6302..8260)
                     /locus_tag="PXD41_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL6288127.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8257..8814)
                     /gene="ccmE"
                     /locus_tag="PXD41_000565"
     CDS             complement(8257..8814)
                     /gene="ccmE"
                     /locus_tag="PXD41_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL6288128.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(9000..9197)
                     /gene="ccmD"
                     /locus_tag="PXD41_000566"
     CDS             complement(9000..9197)
                     /gene="ccmD"
                     /locus_tag="PXD41_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL6288129.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9212..9949)
                     /locus_tag="PXD41_000567"
     CDS             complement(9212..9949)
                     /locus_tag="PXD41_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL6288130.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10149..10811)
                     /gene="ccmB"
                     /locus_tag="PXD41_000568"
     CDS             complement(10149..10811)
                     /gene="ccmB"
                     /locus_tag="PXD41_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL6288131.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10808..11449)
                     /gene="ccmA"
                     /locus_tag="PXD41_000569"
     CDS             complement(10808..11449)
                     /gene="ccmA"
                     /locus_tag="PXD41_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL6288132.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11593..12303)
                     /gene="hda"
                     /locus_tag="PXD41_000570"
     CDS             complement(11593..12303)
                     /gene="hda"
                     /locus_tag="PXD41_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL6288133.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12573..14174
                     /locus_tag="PXD41_000571"
     CDS             12573..14174
                     /locus_tag="PXD41_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288134.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14446..15450
                     /locus_tag="PXD41_000572"
     CDS             14446..15450
                     /locus_tag="PXD41_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6288135.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15552..16445
                     /locus_tag="PXD41_000573"
     CDS             15552..16445
                     /locus_tag="PXD41_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6288136.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16456..17445
                     /gene="dppD"
                     /locus_tag="PXD41_000574"
     CDS             16456..17445
                     /gene="dppD"
                     /locus_tag="PXD41_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL6288137.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            17573..18562
                     /locus_tag="PXD41_000575"
     CDS             17573..18562
                     /locus_tag="PXD41_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6288138.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(18796..>19106)
                     /locus_tag="PXD41_000576"
     CDS             complement(18796..>19106)
                     /locus_tag="PXD41_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Bacteria have multiple sigma factors which are
                     active under specific conditions; the sigma factor binds
                     with the catalytic core of RNA polymerase to produce the
                     holoenzyme and directs bacterial core RNA polymerase to
                     specific promoter elements to initiate transcription;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HDL6288139.1"
                     /translation="ADDDEENHFFDNYGHWKEEYYPSSWQEEAVYSKEFWILFEVCLS
                     NLPAKQARVFMMREYLEATSDEICRVVNITSDNLYTLIYRARLQLQQCLSRKLTERNR
                     "
BASE COUNT         5761 a         4196 c         3972 g         5177 t
ORIGIN      
        1 actatttatt tcacaatcaa aaaaggaatc agactatgag ccaacttgac accttaagca
       61 aaatgaccgt tatcgttgct gacactggtg atattgaagc aatcaaactt tataagccaa
      121 aagatgcaac aacaaacccg tctttaattt taagtgcatc ggcattaccg caatatgctc
      181 cattaattga agaagcgatt aattacgcaa aagcacaaag tagcgataaa gatcaacagt
      241 tagttgatgc tgaagataaa ttagcggtaa atattggttt agaaatctta aaacttgtac
      301 ctggacgtat ttctacagaa gttgatgctc gtttttctta tgatactgaa aaaactatcg
      361 ctaaagcacg taaattaatt ggattatata acgatgcagg catcagtaat gatcgcattt
      421 taattaaaat tgcctctact tggcaaggta taaaggcagc agaacagtta gaaaaagaag
      481 gcattaactg taacttaacg ttattattct ctcaagctca agctcgtgcg tgtgcagaag
      541 caggggttta cttaatctct ccattcgttg gtcgtatttt agactggtac aaagctcacg
      601 aaggtaaaga atatgctcca gctgaagatc caggtgtaat ttcagtaacc aatatataca
      661 attactacaa acaacacggt tatgacacta ttgtaatggg tgcaagtttc cgtaatgtag
      721 gagagatcat tgagttagct ggttgcgacc gtttaaccat ctcaccaccg ttattaaaag
      781 agctacaaga gagcgatgaa aaattagttt gcaagctaga ttacaaaggt gaaatcaagc
      841 ctcgtccaga aaaaatgaca gaagcagaat tctactggga gcataaccaa gagccaatgg
      901 cagtagaaaa attagctgaa ggcattcgta aatttgcgat tgaccaagag aagttagaag
      961 caatgcttgc tgaaaaactt caatagacaa cgcataaaaa aaccggcatt aacgataatt
     1021 aatgccggtt ttaatttcta taaatgatta tttaaactca taacgtctaa tcgtttttag
     1081 atcgctatct tcatttttaa tttcatcggc aagatgaaca cgagcaccaa ccgctgcatg
     1141 tgcatcatac tcacgagtta gagtcacagt ttcaccatta tctcgttgaa ctgtaagttc
     1201 aacaacatcg tttgatactg ctttgctaga taaatgttgc attaccttta tcagaataaa
     1261 catctgcagt acaagctgct aacataagtg aagctaatac agctaaagaa agttttttca
     1321 ttaataatat atcctctagg aaaaactaaa attaaagcag agaaacattc aggtctgaat
     1381 tagaccctac gattctcaca cgtttgccag gcacaaaacc gtcttctttc ttttgaacga
     1441 ccacgatttc tttaccatca tctttgcgaa taaccatttc caatgaagaa acttgactcg
     1501 ctttttgttc tacttgatta ccaattaccg caccggcaac tgcccccact gcggttgcaa
     1561 tcgcttgccc tgtaccaccg ccaatcgcat taccggcaac gccacctaat acaccaccgc
     1621 cgacagtacc gatcacacct tcactgcgtg cttgaatttt cacatcacgc actgaaacaa
     1681 tagtgccata agcgatagaa cgagcttctt ttgcctgctc accggaataa acgcttccgc
     1741 taaacacgtc tgtatttgca cagccaacta aagcaaaact tgacattaat gcgacagcta
     1801 aagctaattt tttcattttg tttgttctcc gaaacgttaa ttttctgaca taattacact
     1861 ttttatatca taagggtgga gctttagaca ataaggatta caaaaagtta catttctcaa
     1921 gctgatcgca atgcttggat ttggcaatct ctccccttct acctgaggtt ggctgatttt
     1981 taatttaatc tcagaattat cagcaagtct aaagtgcgac aatgcccttg acacccattg
     2041 ttccgaactt tcgttgtcta acatcggaaa aaccagctca atatgttccc agccttcttc
     2101 taaataaacc ttatttttcg gaaaaggcaa ctcgacaatc tttacaaatt gtccgcaaaa
     2161 ttcaaccgct tgtattaatg caaacagccc tatcggtctg ccgtttacct cgctctcttt
     2221 aagtaaggtt gccccatcaa gcaaaaggat cttccactgt tctgcggttt cggtttggtt
     2281 cattcttacc gcaagatgat cgatttcata cgctgctaaa tcaatgccgg cgatttcagc
     2341 aatttgtcgg attttctgtt caaattgcga taaatcgcca aaacaagcgg tcattttctc
     2401 gaaaaatttt gcattttctg ctataatttt gtccattttt ttgtaaatag aatttaaata
     2461 ggttaaacag tgaatattca acaaatttta tcagataaaa ttaaacaggc aatggtagca
     2521 agcggtgcag acagcaatgt cgagccttta gtccgccaat cgggcaagcc ggaatttggc
     2581 gattaccaag ccaatggtgc gatgggtgca gcgaaaaaat tggggatgaa tccgcgtgaa
     2641 tttgcccaaa aaatcttaga gaatgccgat ttgaacggta ttgccgataa attagaaatt
     2701 gccggtccgg gctttatcaa cattttctta aacccagaat ggctggcgga gaacactaac
     2761 agttcattgc aagcggtcaa ttttggcata aaaactgcaa atccgcagac gattgtgatc
     2821 gactactcct cgccaaacgt agcaaaagaa atgcacgtcg ggcatttgcg ttccaccatt
     2881 attggcgatg cggtagttcg tacccttgcg tttttaggca ataatgtgat tcgtgccaac
     2941 cacgttggcg actggggtac tcaattcggt atgctgatcg cttaccttga aaaaatggaa
     3001 aatgagcacg ccagcgaaat ggagctaagc gatttagaag ccttctatcg tgcggcaaaa
     3061 gagcattatg attcagacga agcattcgcc gaaaaagccc gtaactatgt ggtgaaatta
     3121 caaagcggcg ataaatattg cttaacaatg tggaaaaaat tggtcgatat tacaatgcac
     3181 cacaatcaag agaactacaa tcgcttaaat gttacgctca ccgaaaaaga tgtaatgggc
     3241 gaaagcctct acaatccaat gttgcctgaa attgtggcgg atttaaaagc caaaggctta
     3301 gcggtggaag atgacggtgc tttagtggtt ttcctcgatg aatttaaaaa taaagatggc
     3361 gacccaatgg gcgtaatcgt gcagaaaaaa gatggcggtt tcttatatac cactaccgat
     3421 attgcggcag caaaatatcg ctacgagacc ttaaaagctg accgagcctt agtcttttct
     3481 gacagccgcc aagctcaaca tatgcaacag gcatggctca ttacccgcaa agcgggctat
     3541 gtgccggaca gtttcagcct tgaacacccg ttcttcggaa tgatgctagg caaagacggc
     3601 aaaccgttca aaacccgtag cggtggcaca gtcaaactca aagatttatt agatgaagcg
     3661 gtagagcgtg ccgataaact gattgccgaa cgttcaaccg agctaactgc ggaagaaaaa
     3721 gccgccgtgg ttgaagcggt tgcgattggt tcggtgaaat attctgactt atcgaaaaac
     3781 cgcaccaccg attatgtgtt cgattgggac aatatgctga cctttgaagg caataccgcc
     3841 ccgtatatgc agtatgccta cacccgcatt cgctccatct ttgcccgtgc gaacattgac
     3901 gaaaatgcat tgagcggttc aatccaactc aatgagccaa aagagcgtgc attagcagtg
     3961 aaactattgc aatttgaaga ggcattaaac ggcgtggcaa aagaaggtat gccacatatt
     4021 ttatgccaat atttatacga gcttgcaggt agtttctcca gtttctacga ggcttgcccg
     4081 attctcaatg ccgaagaaac aaccaaaaac agccgtttga aactcgctgc cttaacggcg
     4141 aaaaccttga aacaagggtt ggatttactc ggtattaaaa ctgtagagaa gatgtaatac
     4201 aaactctctc cccttgtggg agagagaccg cttatgagcg ttcagcgaaa taagcagaga
     4261 gaggggacaa gcggtaattt ttattaaaat ttttacacat tttcccctct ccctgatttt
     4321 tcttctgaac gaagaaaaat ctgtccctct cccacaaggg gagagggcat ataaaaggaa
     4381 acaaatatga aatttattga cgaagccctg attcgtgtag aagcaggcga tggcggtaat
     4441 ggctgtgtga gcttccgccg tgaaaaattt atcccgaaag gcggacctga cggtggtgat
     4501 ggtggcgatg gtggtgatgt gtatttaatt gccgatgaaa acctaaacac ccttatcgac
     4561 taccgctttg aaaaacgtta tgccgctggg cgtggcgaga atggtcgcag tgccggctgt
     4621 accggacatc gtgggcaaga tattacccta cgagtgccgg ttggaacccg tgcgattgat
     4681 aacgacaccc aagaaattat tggcgattta acccgccacg gaatgaaaat gctggtggca
     4741 aaaggtggtt atcacggttt aggtaatacc cgctttaaat cctcagtaaa ccgagctcca
     4801 cgccaaaaaa ccaacggtac gcctggcgaa aaacgtgatt tgaaattaga gctgttactg
     4861 cttgccgatg tgggaatgct tggcttacca aacgccggta aatccacctt tatccgcagt
     4921 gtctctgctg ccaaaccaaa agtggcggat tacccgttca cgacgctggt gccaagttta
     4981 ggggtagccc gtgtgggggc cgaccgcagt tttgtggttg ccgatattcc ggggttaatt
     5041 gaaggtgcag cagatggtgc agggctgggg attcgtttcc taaaacactt ggaacgttgc
     5101 cgtattttga ttcacttagt cgatattatg ccgattgatg aaagcgatcc ggctcataat
     5161 atttcggtga ttgaatccga gctttaccaa tacagcgaaa aactcgccga aaaaccgatc
     5221 tggttggtgt ttaataaaat tgacaccatc ggcgaagaag aagctgctga gcgagcaaaa
     5281 gacattgccg agcaaatcgg ctgggaaggc gattactact tgatttctgc cgctaccggt
     5341 caaaacgtgc aagctctcac tcgtgatatt atggacttta ttgaagccaa cccacgcgaa
     5401 gtggaggaag aaaataaagc acctgaagaa gtcaaattca aatgggaaga ctaccacaac
     5461 gaagcaatgc aaaatgcggt agaagaagat tgggacgacg attggagcga agaagatgac
     5521 gaaggcatag agtttattta cgaacgccat tagtgcaata atacaagcgg ttgtttttaa
     5581 acggagattt gcaaatttcc ggagaaaaac aaccgcttgt aggtttaagg agagtttatg
     5641 cttagctcaa catcgtgcga tttattcaat attccgttct tccaatttgc tcagatgaag
     5701 aaatattgcc ctgaggagat ccctcgaatt aaggcggaat ataaaactca atgggaaatt
     5761 tggaaaaagc tacatcagga agtttctcgt cagcttgggc agccgtttgc tccaccacat
     5821 attgagaagt ggtgcaacgg ttggcaagtt cgagcccatt tttttgccta ttacaagtat
     5881 gaatttaatc gaaattctgc ggctattctt tccgtgattt taaatcgtcg ccgtttgcaa
     5941 gtgagccttg attggcattg ttatcgagcc gatcgctcgc aaattaacgt gcatcaatac
     6001 aatcaatggt gggaaaattt agatcgggaa aagtttgctg attttgagat ttggcacgga
     6061 agtgagagtg aatatgatga ttttagaacc gttagtcaga tgtcagagca agcgttcacc
     6121 ctaactaacg aggaagattt ttggtgtatc ggcaaaaatg tggaaaagga cgatttggat
     6181 aacattgatg tagtagaatt tatctaccaa accattcggg cattattgcc actttatgag
     6241 aaatgtcatc aataaacact aaaaagagag gcgaacatca tttgttcgcc cctttcaaaa
     6301 tttaagctat cacttctttt ttattttcaa tgcgtaaacg gtagcgttta tccaacatac
     6361 agagtaaacc accgagagcc ataaacagcc cgccaatcca aatccagcga atgaacggtt
     6421 tataatacaa acgcactgcc caagagttat cttctaattt ttcgccaagt gcagcgtata
     6481 aatctcgggt aaagccccag tcaatcgccg cttcggtcat tcccattcgg ctcaccgtat
     6541 agaaacgttt ttcagcatta agtgtggctt catatttacc gtttcgagta atttcaagct
     6601 cggcagtgcc gccttgatag tttgccccat cggtgatttt aataccttta aattcaaatt
     6661 ggtaatctaa aatctcagct ttatcaccca cattcattct gacatctcgt tcaatgctga
     6721 aattttggct aaatgcaatg ccgaacactg tcatcgcaac ccctaagtga gccagcacca
     6781 ttccccaatg tgaacgggac agtttgaaaa tgccacttaa gaacgagtgg cgatgggttg
     6841 cacgttggtg tagctcatac aggctaagta acacaataaa gacagacatc atcgtgccta
     6901 acaccacact cacggtaatg gtgttacgga ataagtatgg caatccgaat ccaagcaatg
     6961 ccattaaaat agttgcaata attaccggtt tacgaatagc agaaacttgg tctctacgcc
     7021 atttcactaa tggtccaatc cctaatacaa atgagaaagg aaccattaaa attaagaaca
     7081 tttggtcaaa aaatggtgcc ccgattgaaa tcgtccctaa gccgatttgt ttgtgaatta
     7141 atggcagtaa ggtccctaaa aacaccaccg ataaaaatgc cattaataaa atattattaa
     7201 tgagtagcat cgtttctctt gaatagcgtt catagttatc taagctttta atttccgagc
     7261 ctttgaatgc atacagcagt aaagaaccac ctactactaa caccaagtaa gccaagatgt
     7321 ataaaccacg agttggatct gaagcaaagg cgtgaactga caccaaaatg cctgaacgca
     7381 ctaagaaagt ccccactaaa cagagcgaga aagcaagaat cgctaataag accgtccacg
     7441 ctttaaatgt gcctcgtttt tcagtcactg ctaatgaatg aatcagtgct gttcctgcga
     7501 gccacggcat taatgaggca ttctcgacag gatcccagaa ccaccagcca ccccaaccaa
     7561 gttcgtagta tgcccaccaa gaaccaagca cgataccgag cgttaaaaat acccacgctg
     7621 ccattgtcca cggacgagac catcttgccc acgcagtatc taaacgccct gtcatcagtg
     7681 aggcaatcgc aaaagcaaag gcaacggaga aacccacata gcccatataa agcaacggtg
     7741 ggtggaagat caagcccaca tcttgcagca ttgggtttaa ttctttgcca tcaatcggaa
     7801 aatttgggaa agttctatca aacgggttgg aggtaaaaat cacaaacatc aaaaagccga
     7861 tgccaatgac ccccattagt cctaacactc gagcaacggc atcttccggc attttacggg
     7921 taaaggttgc taccccgaca gaccaaagcg acaacaacca aacccaaagc aataatgagc
     7981 cttcgtgagc gccccacacc gcagataaac gatattgcaa cggtaaacgg ctattggagt
     8041 tgttcaccac atattgcacg gtaaaatcat tcaccgcaaa cagataaaac agcgaaccaa
     8101 aagagacagt caatgccaaa aacattgccc aagtcatcgg gcgggcaaga gcaattaagg
     8161 tgctattttg cttttctgct ccccaaagcg gtaaaactgc caacaagata gaaatcgcta
     8221 gggctaatgc caacgtataa ttgcctaatt ctgcaatcat ttgctttccc cttgcacatt
     8281 gttggctttt tctgcttccg cctcggcttt cattttgcgg tcggtttccg attcaccttt
     8341 cagatcttgt tcagacacac ctgatttttt atgctgttct tttaatttat cgcctaattc
     8401 cggtggcata tagttttcat cgtgttttgc cagaacttcc gtagctttta aacgggttgg
     8461 ttcaatcaac acgccttgtg ccacaatgcc ttgcccttca cggaataaat ccggcaaaat
     8521 tccttcgtat tccacggtaa tcgaaggccc gatatcattg agatcaaata ctacttttaa
     8581 acttttatca tcacgcttta ccgtatcttc cactaccatt ccgcccacac ggatacgctg
     8641 accaacttca ggcttttgtt tcggatcatc atttttaccg tttacaattt cagacggcgt
     8701 gtaaaacaga tcgatatttt ggcttaacgc ataaagtgtc aagcctgctg cgacagaaag
     8761 cccaagtaat atcgaaacca ccacttttaa tcttgatttg cgtcttggat tcatcgtaat
     8821 cacccttcaa aataaatgca aaattgcata aaaactcaaa aataaattag tgtaagaata
     8881 gcaaaaaacc gcaaaacatt cccgatattt caaggaagtt ttgcgatttc tcaaatcaaa
     8941 tacctataaa gaagtatgag gctatcgttg caaaaaataa agttatttcg accgcttgtt
     9001 tattgtgatg tttgctttaa tttttcttca cgcacaatct ctttttttgc ttgagccaaa
     9061 atcgctttct gttcacggcg actaagccaa atcagcccaa tcattgcaat gaaactgaca
     9121 ccataagaga gccatacata aaagccgtag ccacccattg caaaaaaatc gctgattgat
     9181 tcaaattgaa atgtcattgt tctctcctac tctaaactga ttttgccagt tgttttaccc
     9241 aagggcgatt acgttcgtcc tttaataagg caatgcgata acgccaaatg ctaaaccaag
     9301 cggtaaaaat taagctaccg aaaatcgcca atagcaacgg aattaacatt tccaccgcca
     9361 tagacggttt atcgaattta gtgatggtcg ccccttgatg caaggtgttc caccattcca
     9421 ccgaaaagtg aataatcggc aagttaatca cgccaacaac tgacagcaca gccgccgctt
     9481 tggctccggt ttgtctgtct tggaatgcgg aataaagagc catcacgccg atataaagga
     9541 aaaataacac taaagcggag gttaaacgag cgtcccacac ccaccaagtc ccccacattg
     9601 gtttgcccca aattgcaccg gttgcaagtg aaataaaagc gaatactaag ccgataggtg
     9661 ccattgaaat catcgccaag ttagcttggc gaatttgcca aaccaatgcc accaagcctg
     9721 ccaccgccat tgagccatat acgcccatcg accaaattgc tgccggcacg tgaataaaga
     9781 taatgcgata gctatcgccc tgttggtaat ctttcggggc aaaagccaag ccccaaacaa
     9841 aagcagccgc taacataatc aaacttagcc aacctaaaaa cggttggatt ttccctagca
     9901 aatggtactg cgtttccgat tttgcataag ggtgtagcca tttccacata tatttctcca
     9961 aagtaaataa ttcccctcac ccgtttacag gagagggacg atttgagctt cgttcagaag
    10021 cgaaaatcag ggagagggga aaaagttgca aattttcata ataattcgac cgcttcccct
    10081 ctctctgaaa aacacctctg aacgaggtgt ttttcggtct ctctccctca agagggagag
    10141 aggaagtttt agttcaaact aattcttaat gcaccggcaa tcgcaaacgg cgaaaaagtt
    10201 aaagtaaccg ctaaaattgc tccgataatc gccagttgtc cgctataacc catatttaag
    10261 gtggcggctt ctaataccgc agcggcaaaa atcagtaccg gtaagaataa cgggaggatt
    10321 aataaactca gcaacgtacc gcccttgcgt aagcccacag tgagtgccac gccaatcgct
    10381 cctaagcagc ttaaaatcgg ggtgccgagt aataatgtca gcactaacgc ccaccaaacg
    10441 tgggtttcaa gtgaaagcaa aatggcagca atcggtgaaa gtaaaatcaa cggtaagccg
    10501 gtcagcagcc agtgagcaat cactttcgct aacgcaacct gcggcaaggc aagcggcagt
    10561 aacattaatt gctcgagcga accgtctaaa taatcatcac ggaataaccg ctcaaaggaa
    10621 agcaatgcag aaagcaaagc agctacccac gcaatgccgc cggcaatttt gcctaataat
    10681 tcggggttag gtcccattaa aatcgggaat acggtaatca ccattaaaaa aaaccacaac
    10741 ggatttaaaa tctccgaggg tttacgaaag gcaatggtga gttcccgctg aataatagtc
    10801 aataaaatca tactttaaat tgatctaacg aaataatacg cactttgtcg ctttcagcag
    10861 cctggtggct ggtaaaaatc actaatctgc cttgctcgca atgctgttca atatgagcaa
    10921 tcagatccgc cacacccttt ttatcaatag cggtaaaggg ttcatctaaa atccaaagtt
    10981 tggcgttagt gagccacaat tttgccaacg ccacacggcg ttgctgaccg gctgacaaat
    11041 gcgaacaagg caaatcttca cgcccgatga gcgacacttt cgtcaatgcg tgccaaaggg
    11101 catcatcatc ttgcggtaac tgttggattt tctggtagaa acgcaaattt tcccacggtg
    11161 ttaattccgg ttttaccccc gaataatgcc ctaaataaaa tagttcagaa taatagtgat
    11221 cacgctgttt ttgaattgca atatcgttcc acagcacctc accttccgca ggtaaaaaaa
    11281 gcccggctaa aatacgtaac aggctggttt ttccaatgcc gttatgccct tcaatctgca
    11341 cccattcacc actttgcacg gtaaaactgc acccttcaaa caaacgggtt tcgccccgtt
    11401 cgcaggcaat ctgattaagt ttaagctgat attgggccgt ttggttcatt atttttcatc
    11461 tggttgaaca ttttagccga agtgtatcat aagcctttga tttaacgtag caaataaatt
    11521 acttctttag aggtagcaag cggtcaaatt ttcaaaaagt tttgcaaatt ttgataagaa
    11581 tcaaaccgct tgttacagag agaggatttc cttcacaaaa ggaatggtta atttacgctg
    11641 ggcttggaga gacgctttat ccaacttatc caatatttta gagagttgct ctaaatccgt
    11701 tcccgctttt tttaacagaa aatgagcgac ctcatcggac aattccaccc ctttttggtg
    11761 agcatttaac tgtaaaattt ggcatttttg ttcatcggtt aaatcgttta gctggtacac
    11821 ttcgccccaa gttaagcggg aacgtaaatc cggcaattgg atattgagtt ggtgtggtgg
    11881 gcaatcggca ctgattaaca gcaaggtttt ttgcccttcg ttaaacaagc cttgttgttc
    11941 tcgaatttgg ttaaacaggt taaaaatagc aagttcccat tcagcatctc ctgcaatcgc
    12001 ttgaatatca tctaggcaaa tcacattcag cagttcggca ttatctaaca ccaacggcga
    12061 gaaataattg gctttagtga gcggaatata actagaagtt tggttattta aaagaaagtg
    12121 gttacttact gctttcaaca aatgactttt accgcagctc ttaccgcccc aaatgtaaaa
    12181 aaacggctgt tgaacatccg taaaatttcg tttgagggat ccaagcaaca cttcgctgtt
    12241 ttggctataa aaattgtcga aagtgtcttc atcaatttga tgaatgggta gaggtaactg
    12301 caaggctttc cttaaatctc taagtttgat atttttctaa gaatagcgga aaagcagggg
    12361 tttgagaagt aaaaatagtg agaaaatatc cactcatttt tctaatgaag agatgacaag
    12421 cggttgaatt tccacataat tttgtcaatc tgaccgaaaa cccaccgttt tgtgttaaaa
    12481 aaagattgca gttagctcaa aaaattgtat attcaaagct ttctacttaa aaagtagagt
    12541 aaaacaacta ttacaaacac aacggagtga atatgaaaaa catgactaaa ttatcgctaa
    12601 taacattagc gctagccgct tcaagtagcg tctttgctgc accgaaaacc tttgtttact
    12661 gcttagaggc ttcgccttca gcattaagcc cagtgctatc aacagacggt gcaagctttg
    12721 atgtgaacgc cctcccgatt tataacaaat taaccgactt tgaagacggt acaactaatg
    12781 ttattccctc tcttgccgaa aaatgggaca tttcggaaga cggcaaaact tacaccttcc
    12841 acctgcgtaa aggcgtaaaa ttccacgaca ataaagaatt taaaccaagc cgtgagttaa
    12901 atgcagacga tgtagtgttc tccattaacc gtcagtttga tccaaaccat ccattccaca
    12961 aagtttccgg cggtaactac gaatacttta tcggtatgga tatgcaaaat attatcgata
    13021 aagtggaaaa agtggacgat cacaccgtta aaatcagctt aaaagtgcca aatgcgccgt
    13081 tcttagctaa cttagcgatg gatttcaacg ccgtttactc agcggaatat gcagagcaat
    13141 ccttaaaggc cggcaagcct gagcgtattg ataccaaccc aatcggcagc ggcccgttcc
    13201 agtttgtgga ttaccaaaaa gatgccaccg ttcgttacaa agcctttgaa aactactggc
    13261 aaggcacagc gaaaattgac cgcttagtgt ttgcaattac tccggatgca tcggtacgtt
    13321 tagccaagtt acaaaaaggc gagtgccacg caatgcctta ccctaacccg gctgatatcg
    13381 aagatctgaa aaaagatcca aatattgaat taatgagcca atctggaatg aatatcggct
    13441 atttggcatt aaattcatcg attaaaccat tagataacca aaaggtacgt caagcattaa
    13501 atcacgctgt aaacaaacaa gcgattgtag atgcggtata tcagggagcc ggtcaagtag
    13561 cgaaaaaccc aattccacca acaatgtgga gctataatga agcggttcaa gactatgact
    13621 acaaccctga aaaagccaaa gcattgttaa aagaagccgg ttttgaaaat ggttttgata
    13681 ctgaactttg ggcaatgccg gtatcacgtc catataaccc gaatgctcgc cgtatggctg
    13741 aacttatcca agaagactgg aaaaaagtgg gcgtgaatgc gaaaatcgtc agctatgaat
    13801 ggggcgaata tctcaaacgc ttacgccaag gtgaagcggc aacctcaatg attggctgga
    13861 caggcgataa cggtgaccca gataacttcc tcaacacctt attaagctgc tcagcggtgg
    13921 aagccggttc aaactacgcc aaattctgcc acaaaccgtt tgaagaagtc gtgcttggtg
    13981 ctgcccaaga aagcgacaaa gcaaaacgta ccgagcttta taaacaagct caagtgatct
    14041 tcaaagagca agctccttgg attacgattg ctcactccac cgtttacttc ccggtgcgta
    14101 aagaagtaaa aggttatgtg atgagtccgt tcagcttaca taacttctac aaagtagatt
    14161 tagcggataa ataatccgcc aacaagcggt agaatttgca gattttttta caaatttgac
    14221 cgcttgtcct cccctctttg aactacgagg ggcagggggg aaatttggca gaagcgattg
    14281 ccgaagtgag aggattgtaa aagaggaaat aaattttctg tcttattgat tattttcttc
    14341 gttaattact actgtcaaat ctcccctacc ccctctttgc taaagagggg aatcagatcg
    14401 agagatcaga caactttgat gaaaatccaa cctaagagat tttaaatgtt ttcatttatt
    14461 ttaaaacgtg tgctaatggt gatccctacc tttatagcga ttacgttaat tacttttgcc
    14521 cttgtgcatt ttatccccgg tgatccaatt gagatccgaa tgggggaacg tggattatcg
    14581 cctgaggttc atcaacaaat gatggaacaa ctcgggctga accgaccgtt gtttgaacaa
    14641 tacatcagct acatcaaagg tgtattgcac ggtgatcttg gtaactcatt tcgtaacaac
    14701 gaaccggtgc tgaaggaatt ttttacccta ttcccagcca cggttgagtt ggcatttttt
    14761 gccctgctct ggtcgttgat tttcggcatt attctcggtg tgattgctgc ggtgaaaaaa
    14821 gaaagttgga tttcacacac tgtaaccacg ctttcactga ccggctactc aatgccaatt
    14881 ttctggtggg gcttgatttt aattctttat ttctccaccc cgctcggctt accggcttca
    14941 ggtcgtttac catctgaata ctggattgaa gccgaaaccg gttttatgct gattgatact
    15001 tggaattcgg acgaaccagg ggcattttta gcggcaatta aatctctgat tttgccgtct
    15061 atcgtactgg ggacaatccc tcttgcagtt gtgacccgaa tgactcgctc ttcaatgttg
    15121 gaagtgttgg gtgaagacta tatccgcacc gccaaagcca aaggcttaaa cactacccga
    15181 attgtgattg ttcacgcatt aagaaatgcc ttgattccgg tggtaacggt cgttggctta
    15241 attgtcgggc aactgctttc aggagccgtt ttaacggaaa acatcttctc gtggccgggt
    15301 atcggcaaat ggattattga tgcaatcaac agccgtgatt accctgtact acaaggctca
    15361 gtgctgatta ttgctactat tattatttta gtgaacctta cggtagatct actctatggc
    15421 attgtcaatc cgaggattcg acatagttag aaaaattcct tcgatttttc ccctctttag
    15481 caacgaggga gttacacaag cggttcaaat tccgcaattt tttacaagat tatttttagt
    15541 tggagttaat gatgtcagga ataacggcgg taaatccacc cgcacccaaa acaccgttac
    15601 aggagttttg gtactatttt tgtcaaaatc ggggggcatt aataggactt acctttattg
    15661 caatcgtctt tgttgcgtgc gtattcgcac cttgggttgc cccttttgat ccaatcgaac
    15721 aaaatcgcag tgcgttattg ctccctcctg cttggcttga aggggggaat tccgctcatc
    15781 tgctgggtac tgacgatatt gggcgtgata ttctttcccg tattatttat ggttcaagat
    15841 tgtccgtctt tatcggctta gtcattgtgc tactttcttg cgtattcggc gtgattttag
    15901 gtctacttgc tggctactat ggtggcacac tcgacatcat cattatgcgt tttgttgata
    15961 ttatgctggc gattccaagc ctgcttttaa ctatcggcgt ggtcactatt ttaggccctt
    16021 cattgataaa tgccgctatt gcgattgcga ttgtctccat tccaagttat gttcgcttga
    16081 cccgtgcttc tgtattaagc gagaaaaacc gtgattatgt tactgcttct cgtgttgctg
    16141 gtgcgagcgt gcttcgctta atgtttgtgg tgattttacc taactgttta gctccgctta
    16201 tcgttcagat gacgatgggg atctcaaacg ctattttaga acttgccgcc ctcggcttct
    16261 taggcattgg tgcacagccg ccaacaccgg agcttggcac aatgcttgcc gaatctcgtg
    16321 gctttatgca atcggcaaac tggctggtga ccattccggg tctagcgatt ttatcgttag
    16381 tattagcttt caacttaatg ggtgacggct tgcgtgacgc cctcgatcca aaactgaaac
    16441 aataggagat ctaaaatggc attattaacg gttgatcaac tttccgtcca ttttggtgaa
    16501 actaaaacac catttaaagc ggtggatcgt atcagttacg aagtcaatga aggcgaagta
    16561 ttaggcattg tgggcgaatc cggttcagga aaatcggtaa gttctctcgc tattatgggc
    16621 ttaatcgatt tccccggcag ggttatggct gaaaaattgt attttaacgg caatgattta
    16681 ttggcattaa aaccaaaaga aaaacaacag attgtagggg ctgatgtctc aatgatcttc
    16741 caagatgcaa tgaccagctt aaatccgagc tatactgtgg gctatcagat tatggaagcc
    16801 ctaaaagtgc atcaaggtgg ctcaaaagcc agccgtcgtg agcgagcgat tgagttgctg
    16861 acgatggtcg gtattcccga tcctgaatcc cgtttagaag tttatccgca ccagctttcg
    16921 ggtggtatga gccagagagt gatgattgcg atggcgattg cctgtcgccc gaaattattg
    16981 attgccgatg agccgactac tgcgttagat gtgacgattc aagctcaaat cattgattta
    17041 ttacttgaat tacaacgcaa agaaaatatg gcgttgattt taatcacgca cgatttagcg
    17101 ttagttgccg agtctgccca tcgcattatc gtgatgtatg cagggcaagt cgtggaagag
    17161 ggcaaagccg agcagatatt caaagcacca ctgcaccctt acacccaagc attgctcaaa
    17221 gccttaccgg aatttgccga agggaaatcc cgcctgcaat cactaccggg cgtagtgccg
    17281 ggcaaatatg accgcccaca aggttgctta ctcaaccctc gctgcccgta tgcaaccgaa
    17341 aaatgccgaa ccattgaacc ggcaatgcag ataatcaacg gcagacaggt gaaatgccac
    17401 acgccactga atgcacaggg tgagccgata aggatagctg tataacgtca taaagagtag
    17461 ggacgcaatg cttcgcgtcc gttacaagcg gtgattttta accgattttt gcaaaataac
    17521 gatagtggac gcaaagcatt gcgtccctac attttccgag aaggaaaaca gaatgaaaga
    17581 aaataattct ctcccaccat tcctcaaagc agtggactta aaaaaatact acccagttaa
    17641 aaagggaatg ttcgctaaac cgaaaacggt aaaagcgctg gatggtgtct cttttaccct
    17701 tgaacgtggc aaaacccttg cgattgttgg cgaatccggc tgtggaaaat caactttggg
    17761 gcgaatgctc actatgattg aaagcccaac cgaaggtgaa ctgttctaca acgggcagaa
    17821 tttcttagtc aatgacaaag aaacggctca actacgccgt aaaaaaatcc aaattgtgtt
    17881 tcagaacccg tatagctcgc tcaatccacg caaaaaagta ggtagcattt tagaagaacc
    17941 attattgatt aacaccaact tatccgcaaa agaacgcaaa gaaaaagtgt tggaaatgat
    18001 ggcgaaagtc ggcttaaaac cggaatttta cgaccgttat ccgcatatgt tttcgggcgg
    18061 acaacgccag cgaattgcga ttgctcgggg cttaatgttg cagcctgata ttgtggttgc
    18121 cgatgaaccc gtttccgcat tagatgtttc ggttcgggcg caagtgttga atttgatgat
    18181 ggatttgcaa gaagaaatgg gcttgtctta cgttttcatc tcgcacgatt tatccgtagt
    18241 ggaacatatt gccgatgaag tgatggtgat gtatttaggg cgttgcgtag aacaagggga
    18301 taccaaaact atcttcagca atccacgtca cccttataca caagcgttac tctccgcaac
    18361 ccctcgtttg aacccggagc aacgccgtga gcggattaaa ctgactggcg aactaccaag
    18421 cccgcttaat ccaccaaaag gctgtgcctt taacgcccgt tgcagatttg caaccgatcg
    18481 ttgctatgtg gagcgaccag agctgaaaac ctatcaagac ggtactcgca ttgcttgttt
    18541 tgtggtggag gaaaataatt aggcaacgct cgctatttaa aaggttaaag tttttcaact
    18601 ttaaccttta tttttcatac ttaatactcc tcatcttttg tagcaaaatc tttcattaat
    18661 ttgctgatat gctcacaatg gtgtttaaat gacaatacgg gcaaataatc aaatgcgttt
    18721 taacgccaat cttctctttt aaagtgagtt ttcgttcctt tgagtcagaa attaaccttg
    18781 ttacttgtcg gcaattcatc tatttctctc cgttaatttc cttgaaagac attgttgtaa
    18841 ctgcagcctt gctcgataga ttaatgtata taaattatct gatgtaatat ttactactcg
    18901 acaaatttca tctgaggttg cctctaaata ttccctcatc ataaataccc tagcttgttt
    18961 tgcaggtaaa ttgcttaagc aaacttcaaa taatatccaa aattctttgg aataaacagc
    19021 ttcttcctgc cagctagaag gataatattc ttctttccaa tgcccataat tatcaaaaaa
    19081 gtgattctct tcgtcatcat cagcta
//
LOCUS       DANLXB010000025        19103 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLXB010000025 DANLXB010000000
VERSION     DANLXB010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19103
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            141..353
                     /locus_tag="PXD41_000577"
     CDS             141..353
                     /locus_tag="PXD41_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL6288140.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(413..1567)
                     /locus_tag="PXD41_000578"
     CDS             complement(413..1567)
                     /locus_tag="PXD41_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL6288141.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(1564..2382)
                     /locus_tag="PXD41_000579"
     CDS             complement(1564..2382)
                     /locus_tag="PXD41_000579"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL6288142.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            2459..3367
                     /gene="rdgC"
                     /locus_tag="PXD41_000580"
     CDS             2459..3367
                     /gene="rdgC"
                     /locus_tag="PXD41_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL6288143.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            3388..3993
                     /locus_tag="PXD41_000581"
     CDS             3388..3993
                     /locus_tag="PXD41_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL6288144.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            4009..4800
                     /locus_tag="PXD41_000582"
     CDS             4009..4800
                     /locus_tag="PXD41_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL6288145.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            4804..5946
                     /gene="argE"
                     /locus_tag="PXD41_000583"
     CDS             4804..5946
                     /gene="argE"
                     /locus_tag="PXD41_000583"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL6288146.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(6093..6380)
                     /locus_tag="PXD41_000584"
     CDS             complement(6093..6380)
                     /locus_tag="PXD41_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288147.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(6373..6564)
                     /locus_tag="PXD41_000585"
     CDS             complement(6373..6564)
                     /locus_tag="PXD41_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288148.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(6854..7444)
                     /gene="yraP"
                     /locus_tag="PXD41_000586"
     CDS             complement(6854..7444)
                     /gene="yraP"
                     /locus_tag="PXD41_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL6288149.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(7454..8038)
                     /locus_tag="PXD41_000587"
     CDS             complement(7454..8038)
                     /locus_tag="PXD41_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL6288150.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(8044..8415)
                     /locus_tag="PXD41_000588"
     CDS             complement(8044..8415)
                     /locus_tag="PXD41_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL6288151.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(8390..10111)
                     /locus_tag="PXD41_000589"
     CDS             complement(8390..10111)
                     /locus_tag="PXD41_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL6288152.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10185..11057
                     /gene="rsmI"
                     /locus_tag="PXD41_000590"
     CDS             10185..11057
                     /gene="rsmI"
                     /locus_tag="PXD41_000590"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL6288153.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(11302..12468)
                     /locus_tag="PXD41_000591"
     CDS             complement(11302..12468)
                     /locus_tag="PXD41_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288154.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(12620..14134)
                     /gene="putP"
                     /locus_tag="PXD41_000592"
     CDS             complement(12620..14134)
                     /gene="putP"
                     /locus_tag="PXD41_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL6288155.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(14228..15016)
                     /locus_tag="PXD41_000593"
     CDS             complement(14228..15016)
                     /locus_tag="PXD41_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL6288156.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(15013..15591)
                     /locus_tag="PXD41_000594"
     CDS             complement(15013..15591)
                     /locus_tag="PXD41_000594"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL6288157.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQVSHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(15593..15784)
                     /gene="ssrS"
                     /locus_tag="PXD41_000595"
     ncRNA           complement(15593..15784)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXD41_000595"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(15889..16179)
                     /locus_tag="PXD41_000596"
     CDS             complement(15889..16179)
                     /locus_tag="PXD41_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL6288158.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            16258..16815
                     /locus_tag="PXD41_000597"
     CDS             16258..16815
                     /locus_tag="PXD41_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL6288159.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            16913..17977
                     /gene="hemE"
                     /locus_tag="PXD41_000598"
     CDS             16913..17977
                     /gene="hemE"
                     /locus_tag="PXD41_000598"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL6288160.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            18124..18714
                     /locus_tag="PXD41_000599"
     CDS             18124..18714
                     /locus_tag="PXD41_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL6288161.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            18850..>19103
                     /locus_tag="PXD41_000600"
     CDS             18850..>19103
                     /locus_tag="PXD41_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL6288162.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKA"
BASE COUNT         5650 a         4244 c         3927 g         5282 t
ORIGIN      
        1 aatggctcaa gctgttcgtg cgttaattaa agttgaatct tgttagttat tttcctcaag
       61 gcaagtgatt gatagatacg tctgtaatat cccgtttagc tatcttttat cactttttgt
      121 atttatataa ggaaaatttt atgtcagcaa ttaccggcac agtaaaatgg ttcaacgcca
      181 ccaaaggttt tggttttatc acccctgatc aaggtggcaa agatgtattc gtacacttct
      241 ctgctatcga agcaaacggc ggctaccgca cattagaaga cggtgctaaa gtacaatttg
      301 aaatccaaga ttcagagcgt ggagcttcag ccgtaaacgt gaaaacaatc taatttcagc
      361 aaattcaatg aatttcgata aaaatgccga caacttgtcg gcatttttgc tatcaattaa
      421 tctgtacttc aaaccttttc ggcacaataa aaatggcagg tagggtaaaa attgccatca
      481 accaaaatgt caggcttggg gaatgttgat agaccattcc ggcaataaag gtaaatactg
      541 ccataaaagc acagcttgcc aagccaaaat agagaccttg taatttcgtc acacgctctg
      601 ccgattgcat cgaaatatag cgaatcatcg caatatgagc cgccccgaag gtaatagaat
      661 gtagcatttg cattacaata atcagcacga tctctgtagt actacccatt attgcccaac
      721 gaatcactgc aaaaacggca gctaaaatca ttaaatggct gattttccac gatttaaaca
      781 agcgtttaga gaccaaaaag aacaaaattt ccgccaccac cgccaagccc caaaacaggc
      841 tagtcattgc ggttgaaata ctggcatttg accaatgaat ggtgctgtaa gtgtaataag
      901 cggcgtgcga ggctgaaatt aacgacaccg cgatcaacat ttttaaggtt tccggctctt
      961 tcaataattg gcgataagtt acgcttgaag tattggcttt attaccttgt tcttcaaacc
     1021 cgactttggg cgtagcaagc tgccctattc ctaaaaaaac caagaaaccg atgataatcc
     1081 acaccaccga attttcacca agcaagccga taagatagcc ggcagaaagt gagcctacca
     1141 caaacgccat tgagccgaat aaccttgctc tgccgtaatc cagcccgatc tgatgttgcc
     1201 aaattgaggc aatgctatcg gctatcggca ttgcccccga attgaacatt tgaaacaaca
     1261 ttaacaccgg aaaaagtagc caaatgaaat cccctgaaaa cagcaacgcc gccgcagccg
     1321 caatattcag ccaagttaaa ctgcgggcgg tgggaatgag ttggctcacg gtttttaccc
     1381 gttgtgaggc aagcatactg ccggcaaagc ggaacaaata gccaacggcg gcaaataagc
     1441 cgatcatttc agtcgaatag ccgtgatgtt taagccacac tggcaaaaac ggcaacaaca
     1501 cgccataggc acaaaaaaag ccaaagtaat taaatgccgc ccattggaac ggggaaactt
     1561 tcatcataac gattgctcca tttctctggc tcgatgaatt gccgcccaca ttgcatcatc
     1621 aacggtttta gcaagatcgt gctgctcaaa cacctcaagg gctttcgccg ttgtgcctcc
     1681 ctttgaggtc acattttccc gcaaggtcga aagtggcgta gtcgggttcg cttccaccaa
     1741 tttcgccgcc cccaatgcga cagattgtac aagcgttctt gcgtcctgct cggaaaagcc
     1801 catttgcacc gcactttgct gcattgcctc cataaaacgg aagaaatacg ccgggcttga
     1861 gccggttatc gcaataatgt ggttgatttg ctcctcggtt tccacccagt aacatttacc
     1921 aacggctgac atcaactgtt cggcaaattg gcaagcggtc ggatttaccg atttttttgc
     1981 aaataatccg gtcattcctt cgctgattaa agacggggtg tttggcatcg tgcgaatgat
     2041 atttttcgca ctcggcaaca gcgtttccaa gcgttgcaca gaaatacctg ctgctactga
     2101 aatcacccat ttgttggaaa aatcaacatc ggcaaactcg gcacacactt gtgccatcat
     2161 ctgtggtttt accgccagca cgatcacgtc agcctgctct accgcctcac gatttgcaaa
     2221 atttgtcgca attccgaccg cttgtaactc ctctcggcga gccaaattac ttttattgca
     2281 cgcaatgatt tgttcggcag aataaccgct ttttaataag ccttgaataa tcgcatacgc
     2341 catatttccg gtgccgataa aggcaagttt tttctcgttc attcgcaaat tctctactgt
     2401 gttgggttga ggtctgttaa aataacacta ttctacaccc gataaaggat atgcaaaaat
     2461 ggtttggttc aaaaatgtga tgatctataa attaaccggc gagctggcgt tggaaagcaa
     2521 tagccttaac gagttacagc aagaaacccg ctttacccct tgcagccagc acgatatgag
     2581 caaattcggc tgggctacgc cacttaccgg ctcggattta ctgcatttct cacaagcgaa
     2641 ccaatttttg ctgatttcac acaaagaaga taaattatta cctgccaatg tggtgaaagc
     2701 cgaaaccgag caacgcattg cagaactgga agaaaaagag gctcgtaagc tgaaaaaaac
     2761 cgaaaaacaa gccgtgaaag atcaggtcgt ttctgcgtta ttgcctcgag cattcagcaa
     2821 acatcaattc accgctcttt ggttggattt agataatcag ttggtttatg tggatgcagc
     2881 ctcgagcaaa cgggcggaag atacgctggc gttactgcga aaaacacttg gctcgttgcc
     2941 ggttgtgccg atttccttta ccctaccgcc ggcagaggta atgacgaatt ggatcgccaa
     3001 agggcatacg ccaagttggt tgaatttgtt ggaagaggca gaactgaaat ctttcgatac
     3061 cgacagcatt attcgctgta aacgccaaga tttagagacg gaagaaatcg cccggcactt
     3121 gcaagcgggc aaatttatca caaaacttgc gattgaatgg gaagggcatt tcaattgcgt
     3181 gttaaatgaa gacgccacgc tttcacgcct gaagtttgcc gatgaagtgc gagagaaaaa
     3241 tgacgatatt ctcaaagaag atgtggctca acgctttgat gccgatttct tattaatgac
     3301 cgaagagctg aaacttttca ccgaaaaaat gattgccgaa tttggcggaa ttaaatccag
     3361 aatttagaaa aaaatttaag gaaagcaatg ttagatcaaa ccattatcga ccaatatgac
     3421 gccttgattt ttgatatgga cggcacatta attgacacga tgccaagcca cgccaaggcg
     3481 tgggaaaagg tgggcgaagt gttaggctac ccaatcaatc caaagccaat gtacgaactg
     3541 agtggctcaa ccacttttgt gattgcccga gaaataatgc aacgctccaa tatccccgag
     3601 cattattttg agcaagtggt acaactaaaa cgggaatttg ggattgaaat ggtgttagcc
     3661 aatgccactc tgttgcctgc ctttgagatt attaaagcta acgttggcaa aaaaccaatg
     3721 gcaatcggca caggctcaca ccgtgcaatg gtggaattat tagaccaaaa atttaactta
     3781 cgtcaatatg tttcggttat tgtagattct gatgatgtaa gcaaccataa gccagcccct
     3841 gaaacctttt taaaatgtgc ggaaaaactt ggcattgccc cacaccgctg tttggtgttt
     3901 gaagatgccg atttaggcgt gcaagccgcc ctcaacggca atatgaacgt gtttgatgta
     3961 cgtacgaata cgataactca ctcaacccgt taaaaatgat aggtttatat gaaaacagaa
     4021 tggattaaac atttaattca acaattaacc acgctttcca aagccatcga aaactacttt
     4081 accagcggtt catttggggt gaaattctac ccttttctaa tgcacccttg ttttcgtaaa
     4141 agctgtgcct ttttgatttt tattattgct atggtttcaa gttttagcgg gctattttat
     4201 ttggtggcgg aacacatcac gattttattt agcgaaagat cgctcaccac ttacttccac
     4261 catagcaccc ttgaattgat gattccagtc ggcacaatga tagatgaaaa aatcagcgaa
     4321 ttatcaccac tttcggtggt aatgcgttca atgtttgtgc tacaagcagt cgtttttttc
     4381 tttatttatg caatcggcat cacccacatt gctcacaaca aattgcgggt catcggctta
     4441 ttgctttcgc tatgctttgc gattggctgc tcactagttg ccggtattca gccaagcagt
     4501 cgtggcgaat tcggcattta caatttaggg gcaagcatta cgtttttaat cggcaattta
     4561 acgctgatca tcgcaggctt cgatctctac cacccttcaa tgcaattttt taaacgcttt
     4621 agcattggtg cgggcgttat cggggcaatc tgtattttaa tcacgatttt cctaccaacc
     4681 ctgtttagcc cgttaattga acgagcaggt atttatacca ttatgctgtg ggaaatttta
     4741 gccggttttg ccatcattaa acgcctgttg aaattgccct cattcagaca acaaggataa
     4801 ccaatgaaac agattccctt tattcaacgc tatgctcaac tgattgagct accgaccatt
     4861 tccagccttg ttgccgaaga agatttatcg aaccgccgtt tgattgaatt gctcgccact
     4921 tggctggcag atttcggctt taaaaccgag attttagcgg tagaaggcag ccgtaataaa
     4981 tacaatttac ttgcgaccta tggcgagggt gagggcggct tattattggc agggcatacc
     5041 gacaccgtgc cgtttgatga aggaaaatgg cgcttcaatc cattccaatt aaccgaaaaa
     5101 gcaggcaaac tctacggctt aggcacggca gatatgaaag gctttttcgc ctttgtggtg
     5161 gaggttgtga gccaactcga cctaacccaa atcaaaaagc cgattcgcat tcttgccacc
     5221 gctgatgaag aaaccacaat gctgggggca agaacctttg ctcagcacag ccacattcgc
     5281 cccgattgtg cgattattgg cgagccgacc tcgctcaaac cgattcgagc ccacaaaggg
     5341 catattggcg aatcggttcg cattaccggc agaagcggac actccagcga ccccgccaaa
     5401 ggcattaatg cgattgaatt aatgcaccaa tctatcggtt atttaatgaa aatgcgtgat
     5461 gaactgcgag agaaatacca caatccgctg ttccaagtca cccacccgac aatgaacttc
     5521 ggcaatattc acggcggcga tgccattaac cgcatttgtg cctgttgcga attgcaattt
     5581 gatatgcgac cactaccgaa tatggcggtg caagatttgt atgcaatggt aaacgagcat
     5641 ttaaaaccga tgctggaaca atatggcgat ttaattgaaa tccgccattt acacgatgga
     5701 attccgggct acgaatgcga acactcggca caaatcgtgc aagtggttga aaagctactg
     5761 ggcgaaaaat gcgatgccgt caattactgc accgaagccc cattcattca acaactctgc
     5821 ccaacgctgg tactaggccc cggctccatt gaacaagccc accagcccga tgagtttttg
     5881 gaaatgaaat atatcgaacc gacaaaagag ttattgacta aattgattta tcatttttgt
     5941 ggataaatca acagaaacaa gcgctcattt tcgccatact ttttgcaaaa gaatcggcaa
     6001 aaatgaccgc ttgatattta gtattgagtg acctataaac ttccatactt catcattgat
     6061 ttaaggagat tctgttagat aggtattaat ctctagctag gtcttggata caaacggcga
     6121 gaatgaatta tagtaataat atatactttt tctaggtgta tctcatagac aatacgataa
     6181 ttgcggcaga atgtttctaa tgtgccatct tctctacgtc gccctattgt aggcataaat
     6241 gcaatgagat cgagtttatt ttgtaattgt tcccaaagtg aaactgcgct caaccaatgc
     6301 cctgtataat cttctaccga ctgtaaaatc tcaatgacat tagaccttgc ggtaagtgac
     6361 agctcccaag atttaggcat aattaacctc aaacaaattt tcattttctc gtaattgctg
     6421 acgtttctgc atatccgcaa ataaatgatt taattcgtta ttgatttgtt ctttggtaaa
     6481 ggtttctcct cgagctattg cttcttgacc agctttaatt tgctctgcaa gaaactcatc
     6541 atatccttgt tctttgaata gcatattctg ctcctttgat ttgtgtcttg attccactat
     6601 gttcaagaca tagtttaagt ttaaatctac gctcaaagca atgaagagtc aagggaatcc
     6661 ttatgttgat agggtgtgca tatttttcga gtcaaatgaa ttaaaaatca tcattacgat
     6721 cacccactca tagattttat cttcctatct aaggtcatct tcttatatca aacaagcggt
     6781 ctaaatttgc aaaaaaatga caaatttaga ccgcttgtga gttacaaaaa tataaactaa
     6841 ttgagcttat caattactgc gcataactaa atactttcac cactttggtt actccaccta
     6901 cattgcgagc ggcttcggcg gcggcatcag cttggttttg gctgactttg cccattaaaa
     6961 acacttcgcc gttttcggtg acgactttca cttcggtggc ttttacctcg ctatttacta
     7021 acagtttgga tttcacttgg gtggtaatcc agctgtcttg tgtaatctgt ccaaagccga
     7081 ttttttcgcc ttggcggatt tcgttgtaaa tttccgtcac gccctccgcc ccagcagcga
     7141 ggtttttcgc attttccact acgtccatac ttggtgcttg cccgattaat aacactttgc
     7201 cgttgtaagc caccacgtta atgcgggctt cttgtttgat ttgctcgtct ttattaatgt
     7261 tgtaagcgac tttttcttct aaaatttcat catcaacttg cgtgccggtg gtgcgtgggt
     7321 ctgtcgccac tttagttgca accgccgcag aagtcaccac cgccgtggtg atacaacctt
     7381 gtaaagagat aaaacctaat actaataggc tgccctttaa tagtttattt gctaatttgt
     7441 tcataatctc tccttacgaa aatagtaaat ggtcgataag ttcacataat aaattcacat
     7501 aaaaatgatg gctttcaatc accctcagtt gattggttga aggggctgaa atttcaatat
     7561 cactttcatc taataagccg agtgtgtggt cgttattact gcctgttaaa gcaataatat
     7621 ctaaatctaa atgttgattt ttcgccgtat gaatagcttg caatatacat tcttcattac
     7681 ccacaggcga aaaaacaatg aagagatcac cctcttttgc aaccgcctgc aactgttttt
     7741 tataaacagc ctctaactcg ttatcttgtg ccacaactcc tgccaataca ccgcttaatt
     7801 gcagttgtac ggcagcaaaa ctcggtcttg ccagttcata acggtgaagt aagtggctga
     7861 ccaataattc ggcattaccg taagagcgac cgtgtccgca gacgataact ttatcgccac
     7921 gcaacaaaca ggcaacaatg cggtttgccg cttcacttaa tttagccggc aatagctcag
     7981 aggcggaaat ttgggtttga atactttcgg taaatctatc ttggatttta tttaacattc
     8041 tttctaacct aaaaagttgg gaatccacac aggcgtttgg tttccttcaa aagcaaccac
     8101 atcaaaacgg caatttgcag tttctaaact ttggttttgt ttaagcaacc acatattagc
     8161 ggcattttgc catttttgtt gcttgcggta atcaatactc tcaacggctg aaccgaagcg
     8221 gttgctttta cgctggcgaa cttctacaaa cacaacggtt tgtccgtctt gcataatcgg
     8281 atccagttcg ccacctttaa atgcttggtt agcggcaaca aaacgaagcc cttgctgttc
     8341 taaaaacact cgggcttttt gttcataaaa cgagccttgt tcccgtttat taataagctt
     8401 gttgaatagc tccattgcga tattgcatcc aagataaact acgttcaata ttacaatgtt
     8461 gtccggcttt taactcaccg gttaaacctg aaattttgta gcccggaata tggcggaatt
     8521 cattgaattt ggttgccaat gaccacgcat cagcccccat tgcgtataaa cgcatcattg
     8581 agaaatcgct attggctaaa ttctcggctt ttttatattc actagaactt tgatcagcta
     8641 acagtggcac ttcactaaat tttacccctt ccattgaagt gtaaaaatca atgccgttat
     8701 ttggcgaatt actgcgagat gaggtataga tcgctaaacg atcttttaag gttgagctat
     8761 caataccttg tttaatttct aatacttgct cggcattccc caaaatatat aaagctgctt
     8821 tgctcacacc tgcattttga atagcggcaa cggcatcaag cggttggttg tagtaacgca
     8881 catcagcatc gctattggta agctgacgcc agcgtttggc aaaggcttct gccgagcggt
     8941 tgccgtagtc atcttgaggg gccgcaacga tagcgacact attaccgtct tgataaattt
     9001 tttccgcccc tgattgtgcc tcagattcag gagataaacc gtagtaacac acctgagcaa
     9061 tattacgcac attttcagtg gcattcagtg ccaaaatatt cacgttttgg atttctgggc
     9121 taagtagcat ttcatcaaca cgagatttga gcaatggccc gacaatcaca tttgcccctt
     9181 gctgttttgc ctgtgaaatt aaggaattaa catcagatga atcggtatca aaagtttgca
     9241 ctgcggttga gtcatcagcc ttagcatcat taaaaccacg cttgataata tcacccaaaa
     9301 tttttgcatc accacttaga ggcaatagca atgcgacact gtttaactgg gtttgttgga
     9361 aattactcac cccttgtaat tccgttggca ttacggcaac cgcactatgg ctcgggtatt
     9421 gggctttcca attattaatt gcttgtggca tttgtgccgg tgtcgtcaca ttttgattat
     9481 agatattaat taatgccaac caaccagcaa gctccatctc acccgcttca ggcacagttt
     9541 tttccagcat tcctcgattt gcatcacgca aggtttgcca aataatatcg ttattttctt
     9601 ggcgttcacg gttcatttta tagaaattgt taagttgcga tcttgcacgc acaatgccaa
     9661 tcacatcttt ctgattggca gcaatacggg cttgggtttg aatataacgc aaacgctgtg
     9721 ccgaacttaa tagcggatct tgaatggctt ttaattggct tgttgcttgc tcgtttttcc
     9781 cttgtaaggc ggcaagctgg gcggaaacca aggcatactc taacttttgc acctcgttca
     9841 tctctgcggt cagaatttca ctaaaggtat tttgagcctc atattcctta ttttcatcaa
     9901 ttaatttgcg tacagctaaa agttgatacg aaattttatc ttccgcttct ttggtttgat
     9961 ctgctttatt aatatagaat tccgagcttg aataggcttc atttttaatg gattcggtga
    10021 caggatttac cgatgtacag gcagaaatga ataatgcaat cgccgttggc accaatgcct
    10081 ttttcattgt atggtttaaa atagttgcca ttgtcagatc ctcaatagaa tataatgtgc
    10141 taaatttaat gtgaaatctt acttatcaaa cgagctaaaa gcaaatgaaa aacagacaaa
    10201 attcatctgg aatcaaccca aattacggaa ttttatatat tgttgccacg cctatcggca
    10261 atttaggcga tattacccaa cgggcgttag acaccctttc atctgtcgat ttagtcgccg
    10321 ccgaagacac tcgccacagc ggtttattgc tgagccacta cggcattaaa aaaccgtttt
    10381 tcgccttgca cgaccataat gaacagcaga aagcggtcgt tttagtcgaa aaattagcaa
    10441 aaggggaaaa cattgcgtta atttccgatg ccggaacgcc actgattagc gacccgggct
    10501 ttcatcttgt ccgtcattgc cgccaagccg gggtaaaagt tgtgccgatc cccggggctt
    10561 gtgccgctgt tactgcctta tgtgcttcag gcatagcttc agaccgtttt tgttttgaag
    10621 ggttcttacc ggcaaaaaca aaatcccgtt gcgataaact taccgagctt gaaaacgagc
    10681 ctcgcacact gattttttat gaatccaccc accgtatttt agacactctt gccgatatgc
    10741 agactgtttt tggcgaagat cgctatgtgg taatggcgcg tgaaatcacg aaaacgtggg
    10801 aaaccattta tggagatcaa ctgggtaact taattgaatg gctaaatgag gatagcaacc
    10861 gaattaaagg cgaaattgtt ctggtggttg aaggtaaacc gcaaagtagt gaggaagcct
    10921 tttccagcca agcgatcaaa ttactgacat tactctgcca agaacttccg cttaaaaaag
    10981 ccgctgccat tgtggcagaa accttcggct ataagaaaaa tgccctgtat caatatggat
    11041 tggagcattt tgagtaacag acaagcggtc agattttgtg agttttttgc agattggcac
    11101 tcccctctct ctgaaaaatg tttctgaacg aaacatttcc cggtctcaat actcgctacg
    11161 ctcgctcctt cggagccgtt ggcaaagcca acgttcaaat gtaaacattt gtcccataag
    11221 gggagagagc taaattattc gcttgtcgac ccctctccac tcgtgggaga gggacagatt
    11281 cttcttcgtt cagaagaaaa atcagggaga gggggaagtt tctcgcacta aattccgata
    11341 agcatatgcc ataatcgcaa acatcaacag caagtaaagc ggtaataatt gaatgctgat
    11401 agcattagca ataaagccga aaatcggtgg caataacagg acgccgatat aggcacttgc
    11461 catttgcacg ccgatcaccg attgagactt gtcctcgccg aaaaacgcag gggtcgaatg
    11521 aattaagcac gggaaaatcg gggcacaacc tagcccgata ataattaaac ttgccagcgt
    11581 aacatatttg cctaacggca agcacagtat cgcaatgccg actaagatca aggctgaacc
    11641 aagtttaatc atttgtctgt tgctaaattt aagcgtcaag aagccactta cgcctctgcc
    11701 aacggtaatg ccgataaaga aaatactgcc gaacgcagcc gcttgttcta agccgacatc
    11761 tttaaccatt acaaaatagc tactcgccca cagtccggcg gtttgttcta cgccacaata
    11821 gccaaaaaaa gctaaaatgc catatttcac gcccggaatt tttagcgttt cttttaagct
    11881 catcggtttt gccgaatggt tgatttcagc ggtaatctgc ttgcgtaatt tccaaaaagg
    11941 cagtgagcaa aacagcatta gcgttagccc gatttgtaac attgaaatgg tgaaatagcc
    12001 tgcctcccag cctcgccctt gcaataaggc gtagcctaaa atgtgcggcc cgatagaagc
    12061 tccaacgccc cacatacaat gcagccagct catatggcgg cttgcgtagt gaactgctac
    12121 atagttattc aacgccgcat caaccgctcc agcccctaag ccgtaaggaa ttgcccataa
    12181 acataagatc cagaaagcat cactgattga aaagccccac aatgctaaag ccgttaaggc
    12241 aacgctgatg accattactt tgcctgtgcc gagatggtag gtcagtttgt ccgacattaa
    12301 gctagaggta atagtgccaa tcgacataat catcgagacc acaccggcat aggaaagcgg
    12361 aacagcaagc tgttggtgca ttgacggcca cgccgagcct aaaattgcat caggcaaccc
    12421 aaggctgata aaagagagat aaataatagc gagtaggagg ttagtcatag cttacaatcg
    12481 gtcacaaaaa gcatcgcttt ttgaacgttg gctctgccaa cgggagcgaa gctgtgaaca
    12541 atccttacaa ggattgtgaa taatttttga taaatttttt gtaaaaaaat ggcttaagga
    12601 gaccttaagc caaattttat tatttcactt ctgccaaata ggccttatta gcacggtcaa
    12661 aggtgtctaa tacggctttg cttggcattg gcgtgataag tgataccaca atgatcatta
    12721 gggtagcagc aataaagccc gggatcatcg agtaaatttc cggtaaggcg agcttaagtg
    12781 taatatcgcc ccaaaaatgc acgattaacg caccggtcag cattccggca atcgccccaa
    12841 aaccgttcat acgtttccag aatagtgaaa gcaataccac aggcccaaat gccgagccga
    12901 aacctgccca cgcattacgc actaagccaa atactttgct gtccgggtct tgggcaatat
    12961 aaatagctaa tgctgccacc gcaagcacca tcaagcggct taaccaaacc agttctttat
    13021 cggaggcttg agggcgtaaa atgcctttgt ataaatcttc ggtaatcgca cttgaacaaa
    13081 tcagtaattg agcggaaagg gtactcatta ccgcagcaag aatggcagat aataaaatgc
    13141 cggctaccca agggttaaat aacaatttag ctaattcaat gaaaatttgt tccggatttt
    13201 tgctgatatt gccgacttgc tccgggttgc caaagaaata tgccatacca aaataaccaa
    13261 tgcctattgc ccccagtaag cagataatca tccaagtcat actgatacgg cgtgcatttt
    13321 caagagactt cacactttct gccgccataa aacgcaccac aatatgcggt tgtccgaaat
    13381 aacccagccc ccacgccatt aagctgataa tgcctaatac gctggtgccg gtgaaaatgt
    13441 cgttgtagtc tttttgtgcc atctcgcctg cacggtcgat taaggcttgc atttcatcaa
    13501 aaccacctaa gttatacatc acaaaaaacg gggtgagaat cagggcaaaa accattaatg
    13561 aagcttgaat agtatccgtc caacttactg ctaagaaacc accaataaag gtgtaaagaa
    13621 tggtagcaac agccccatac caaattgctt ggtggtaagg taagccaaat aagttttcaa
    13681 ataccctcgc accggccaca acgcctgatg cacagtaaat tgcaaaaaag agtaaaaaaa
    13741 tgaccgctga taaaatctta attaaacggg ttttatcgcc aaaacggtta tgaaaatatt
    13801 cgggtaaggt taaggcatcg ccactgtgtt ctgtatgcga gcgtaatctg cctgcgacta
    13861 atttccagtt tagataagct ccgatagtta aaccgattgc gatccagcct tcgatcaaac
    13921 cgcctgcata aacggctccg ggtaatccca tcagcaacca gccggacata tctgatgcac
    13981 cggcagaaag tgcggtcaca aagctaccta aacggcgacc gcctaaaata tagtctgaaa
    14041 ggttattggt aacacgatag gcaataaagc cgatggcaat cattcctaga atatagacaa
    14101 caaacataat tgttgttgga tcaagaccaa acattattaa tgaatcctca agatttctta
    14161 ttgtataaag attaaagtga gtaaagggta aaagattacc tgaaataatc aaaatggcaa
    14221 cacaaaatta ccgtccgccc agctcagctg aaattttttc tgctgtttct tgaatagccg
    14281 gtagtagatt ttcccgcccc agctgattta aacgagcagt tgaaagcgaa acagaaatcg
    14341 cataatggac tttttgttgg tgatcaaaaa tcgggcaagc aatacaagaa acccctaatt
    14401 cattttcttc gttatccatt gcaaaacctt gacggcgaat ggtttccagc tcggtttgca
    14461 ttccgtcaat cgtggtgatg gtattgaccg tcagtttttg aatgatgtcc gatttagtct
    14521 gccaatattg tggaatgtaa tctgccgaac cataagcaag aaacagtttt cccattcccg
    14581 agcaatagag ttgcatttgt tgcccgatat aggctcgggt acgcatcatt ccggtggtag
    14641 cttctaattt attgattaaa atagcgtgat cgttttcccg catcgcaaaa tttaccgtct
    14701 cgcctaaggt taaatttagg gcttctaaat gtggggcggc aatatgcaaa atgttaatcg
    14761 aacttaaggc tcgctgcccg attgccaaac atttggtggt taaacgataa ctgcccgcag
    14821 tcggtgcagg gcggacgtag ccctcttgtt gtaagccttg tagcagacgg tgaaccgtgc
    14881 ttttgttcag ccccgaaagc tcggctaaat gggcaagcgg acagccgttt gggaatttcg
    14941 ctaacaattc caatagtgtt aagccacgaa ttaaactttg atttccactc gattcctttt
    15001 ctttctttgc attcatttgg ctgctcccaa aataatatga tctaacggca tatcccaact
    15061 ctcaatcggt aattgttcga cttgctgaca ttcgtgtgcc aaaccgacac taatcagatg
    15121 aggtgcttga gcaagggttc tatcataaaa gccacctccc attcccagcc gatttccggc
    15181 tttatcacaa gcaacaagtg gggtaaaaat catctctaat tcttgcaacg gaaggatatt
    15241 tctaacatct aatatcggct cttgaatccc caagcggtta aattttagaa tagttttgca
    15301 attgtaattt acaaacaata attgaccgct tgtaaaaggg tgcaacagcg gcagatacag
    15361 ctttttgccc tgttgaagta attgttccat taaaggaata ggagaaattt caccgttaaa
    15421 aggcaaataa aaggcaatat gtgagacttg gtaagattca atcaatgaaa gagcttgagg
    15481 aataatggat tcggctgctt gagtttgctg accggcagtt aaactttgcc gtttaagccg
    15541 cattgattgc cgtaattggc tacgaagatc ggttaaagat gattgattca tataaagacc
    15601 cgagatgccg ctaccagtaa tggtccttga accagtcggt tcaagggagt caaacttaac
    15661 tgcttttagg cttcttactc ctaattaaat tagggtaagc ttgctcacca gcgttagatg
    15721 tccaactcaa agtttcaaat tatcggctca gggacgtaac tcgtaacgca caccccaggc
    15781 aagacttata gtaacggaat ttgatgattt ttcctagtat ttaatcccac aaaatgcaaa
    15841 ttctcaatct ttttggctct attcctaatc aattcgatta aaaattacct aattggattg
    15901 aaatttgcca agcgaattat ctaactgctc aatacaagcc accaacacat ttttattttc
    15961 tgcattttgg cgttgggctt gctccagttc ataatttaaa ttcagtgcca caatcgctaa
    16021 cactttttca agctgaataa tgccggactg ctctttcaat accaccacac gctcttccaa
    16081 acgctgtgct gaagccagta aatgctcttg ctgttcaaca gggcattgca agcgtaaaac
    16141 ctgcccaaaa atctgtagtt cgatattatt tgccgacata aatacgaaat cctcacttaa
    16201 tcgcaaaatt tttgctatat tatgccattc tttagcaaaa tcacaaataa tcccattatg
    16261 gctatcacag attcccaaca atttaaacaa ctggtatcac aattacaaat tgatgataca
    16321 ccggcagagt ttcacggttt tttatgcggt ttaattgccg gcggtattca agatgagtct
    16381 tggaaaaccc tcacctacca atttaccaat gacggacacg cattttccat cgagccgtta
    16441 aacactttaa ccgattttta tcagcaatta agtgaaagct tttcagaagc caacacgctg
    16501 tttagccttt ggttgccaca aaacgaagaa gatggttttg ccttagctga tggtatctcc
    16561 gaatggacaa acagtttctt acttggactt ggcgttgctc aacctaaatt acaacaagaa
    16621 accgatgagg ttggcgaggc aatcgatgat ttagatgaaa tcgccaaact aggctacagt
    16681 gacgatgata ataacgagga actactggag gctggcgaag aagtgttgga atatctgcga
    16741 gttttagcct tattcttgca cagccatttt gctttaggcg tgccgaaaac cgaagaaaag
    16801 ccaccattac actaatgaat aaatacaagc ggttcaattt catctctatt ttgcaaatat
    16861 attatgcggg gcgaaaaata tttcgcccct accaaaatca aaggaaaaac caatgtcaga
    16921 attaaaaaac gatcgctatt taaaagcgtt attgcgtgaa cctgtggata tgaccccggt
    16981 ctggatgatg cgtcaagccg ggcgttattt gccggaatat aaagccaccc gagcagaagc
    17041 cggcgatttt atgtcactct gccgtaacgc tgatttagcg tgtgaagtca ccttacaacc
    17101 gctacgccgt tatgaactcg atgcagctat cctattttcc gatattttaa ctgtgcctga
    17161 tgcaatggga ttaggtttaa gttttggtgc aggtgaaggc cctaaatttg cccgcccggt
    17221 ggcaagcctc aatgatgtca atcagctacc gattcctgat ccggaagacg agttgcaata
    17281 tgtaatgaat gcggtgcgta ccattcgccg agaattgaaa ggcgaagtgc cactaattgg
    17341 tttttctggc agcccttgga cactcgccac ctatatggtg gaaggtggtt caagcaaagc
    17401 atttaccaaa atcaaaaaaa tgctttacgc tgagcctcac attctacaca aattgctgga
    17461 caagttagct gacagtgtca tcttatactt aaatgcccaa atcaaagccg gtgctcaagc
    17521 ggtgatggta ttcgacactt ggggcggtgt attggctcac gaggattaca aagccttctc
    17581 attacactat atgcacaaaa ttgtggacgg cttaattcga gaaaatgaag gacgtaaagt
    17641 gcctgttacc ctattcacca aaggcggagg cttatggtta gaagcgattg cagaaacggg
    17701 ctgcgatgcc gttgggctag attggacagt cgatattgcc gatgctcgcc gccgtattgg
    17761 cgacaaagtt gcgttgcaag gcaatatgga tccaagcgtg ctgtatgcaa gccctgaacg
    17821 aatcgaacaa gaagtaaaaa acattcttgc cggcttcggc aacggcagcg gacacgtctt
    17881 taatcttgga cacggcattc atttagatgt gccggtggaa agcccgaaag tgtttgttga
    17941 tgcgattcac aactactcga agcagtatca taaataatgg ataaaatgcc ctctctcctt
    18001 gtgggagagg gacagatttt tctttgttca gaagaaaaat cagggagagg ggcaagcggt
    18061 catttttata cagaattttg caaaatcgtt cccttctctc tgaaaaataa agaaggaaat
    18121 acaatgagaa acccgattca taaacgcatg gaacgtttcg agccttggca aaacaccaca
    18181 tttatggcgt gcctatgcga aagaatgtac cccaactatc agcttttttg tgaagtaacc
    18241 gaacagcctg aaaaagctaa ggtattccaa aatattttaa atttagtctg ggaatattta
    18301 accataaaag gggcaaaaat taatttcgat aaccaactgg aaaaattaga agaaatcatt
    18361 cctgatgtga acgaatatgc gttttttggt gtcttacctg cacaggaagc ttgcgaagcc
    18421 ctttctgaac ttcttcacag tattatcgct ggttcaaccc ttgaacaagc aatccgcatc
    18481 agccaaattt cattaggcac agttgccagc tatttggaaa tgcaacaaga taaagaactg
    18541 aacgagcaag agctaaagaa ttctgaagaa attcaagaag aactggacgt acagtggcaa
    18601 atataccgct tgctaaacga atgtgaaaaa cgtgatcttg atctcatttt tgaacttaaa
    18661 gatgaaatca gaagcagcgg gattagtaat atcgggttaa atattaacca atagcattga
    18721 tatttgcaaa atcttgctta ataatacttt gagaaatctt aactttgaat taagctatcg
    18781 caaggtttca ataacttctc agacgtttta cgtcatttat taaaaacaca tatcttagag
    18841 gataaaacta tgaacaaaac tgagttaatc gatgctatcg ccgctggtgc aaacttaacc
    18901 aagaaagatg ctaaagcagc attagaagca actcttgatg caatctctgc aagcttaaaa
    18961 gcaggcgacg ctgttcaatt aatcggcttc ggtactttta aagtaaatga gcgtaaagca
    19021 cgtactggtc gtaacccaaa aactggtgaa gagatcaaaa ttgcagcagc taaagtacct
    19081 gcattcgttt caggtaaagc att
//
LOCUS       DANLXB010000026        19082 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLXB010000026 DANLXB010000000
VERSION     DANLXB010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19082
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            145..1590
                     /gene="aldA"
                     /locus_tag="PXD41_000601"
     CDS             145..1590
                     /gene="aldA"
                     /locus_tag="PXD41_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL6288163.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            1846..2493
                     /locus_tag="PXD41_000602"
     CDS             1846..2493
                     /locus_tag="PXD41_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL6288164.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(2626..4002)
                     /gene="trkA"
                     /locus_tag="PXD41_000603"
     CDS             complement(2626..4002)
                     /gene="trkA"
                     /locus_tag="PXD41_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL6288165.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(4002..5333)
                     /gene="rsmB"
                     /locus_tag="PXD41_000604"
     CDS             complement(4002..5333)
                     /gene="rsmB"
                     /locus_tag="PXD41_000604"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL6288166.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(5385..5810)
                     /locus_tag="PXD41_000605"
     CDS             complement(5385..5810)
                     /locus_tag="PXD41_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6288167.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(5903..8551)
                     /locus_tag="PXD41_000606"
     CDS             complement(5903..8551)
                     /locus_tag="PXD41_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL6288168.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(8753..9715)
                     /locus_tag="PXD41_000607"
     CDS             complement(8753..9715)
                     /locus_tag="PXD41_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL6288169.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(9899..11746)
                     /gene="selB"
                     /locus_tag="PXD41_000608"
     CDS             complement(9899..11746)
                     /gene="selB"
                     /locus_tag="PXD41_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL6288170.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(11756..12052)
                     /locus_tag="PXD41_000609"
     CDS             complement(11756..12052)
                     /locus_tag="PXD41_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288171.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(12049..12225)
                     /locus_tag="PXD41_000610"
     CDS             complement(12049..12225)
                     /locus_tag="PXD41_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288172.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(12294..12926)
                     /gene="pdxH"
                     /locus_tag="PXD41_000611"
     CDS             complement(12294..12926)
                     /gene="pdxH"
                     /locus_tag="PXD41_000611"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL6288173.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(12984..14366)
                     /locus_tag="PXD41_000612"
     CDS             complement(12984..14366)
                     /locus_tag="PXD41_000612"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL6288174.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            14434..14528
                     /locus_tag="PXD41_000613"
     tRNA            14434..14528
                     /locus_tag="PXD41_000613"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14468..14470,aa:Sec,seq:tca)
     gene            14735..15424
                     /locus_tag="PXD41_000614"
     CDS             14735..15424
                     /locus_tag="PXD41_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL6288175.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            15434..16336
                     /locus_tag="PXD41_000615"
     CDS             15434..16336
                     /locus_tag="PXD41_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL6288176.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            16361..17239
                     /gene="nanA"
                     /locus_tag="PXD41_000616"
     CDS             16361..17239
                     /gene="nanA"
                     /locus_tag="PXD41_000616"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL6288177.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(17300..17506)
                     /locus_tag="PXD41_000617"
     CDS             complement(17300..17506)
                     /locus_tag="PXD41_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288178.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(17464..18102)
                     /locus_tag="PXD41_000618"
     CDS             complement(17464..18102)
                     /locus_tag="PXD41_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288179.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(18344..19063)
                     /locus_tag="PXD41_000619"
     CDS             complement(18344..19063)
                     /locus_tag="PXD41_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6288180.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
BASE COUNT         5462 a         4212 c         3871 g         5537 t
ORIGIN      
        1 gttgcttttt tatcgccaag aaatgtgatt ttgttcacat ttatatctat aaattaacaa
       61 aaataaaaca atttgtttgc aaaggcggtt cagttaccga atgatagtca tcaacttcca
      121 ctgtggataa aaaaggagca actcatggtg aaacaacata aaatgtatat taatggtgaa
      181 tttgtgcctg cgttagatgg tcgcacttta gcagtctata accctgccac cgaaaaagct
      241 atctccgaag tccctcgtgg cggagctgat gatgccaaaa tcgctatcga tgctgctgaa
      301 gccgcccaag aagcttggga acgtttacca gcgattgaac gaggaaaata tttacgtcaa
      361 attgctgtgg ggattcgtga gcgtgccgat gaaattgctc gcactatttc cgaagaaatg
      421 ggtaaaactc tgtccttagc aaccgttgag gtacatttta ccgctgacta cttagactat
      481 atggcagaat gggcgagacg ttatgaaggg gaaattatcc aaagtgatcg cccaaatgaa
      541 catattttcc tatacaaaaa agcgattggc gtcaccaccg gcattttacc ttggaacttc
      601 ccgttcttcc tcattgcccg taaagcggct ccggcattag taacaggtaa tactattgtg
      661 attaaaccga gtgaagatgc acctaataat gcgattctct tttcggaaat cgtgcatcaa
      721 gtcggtttac ctaagggggt atttaatgtc gtcaccggct atggcaatga agtcgggccg
      781 gaactttcag gcaatgaaaa aatcggtatg gtttccttta ccggtagcca gtttgccgga
      841 caaaaagtga tggaagccgc cagcaagaat atcattaaag tcaatttgga attgggcgga
      901 aaagcaccgg ctatcgtatt agacgatgca gatcttgagc ttgctgctac cgctgtagta
      961 aattctcgaa tcatcaattc aggacaggtt tgtaactgtg cagaacgcat ttatgtacag
     1021 agttcaatta aagagcaatt tgtccaaaaa ttggtagaga aaatgcaagc ggtgaaatat
     1081 ggtaatccat tagaacaaca agacattgat atggggccga tggtaaatga aaaaggcttg
     1141 cataaagtgc aggaaatggt gacacacgca ctgcatcaag gaggtaatct ggtattaggt
     1201 ggtaacgtgg ttgaaggaac aggctactac tttgagccaa ctattatcga caatgtagat
     1261 aactctatgg atattatgcg tcacgaaatt tttggtccgg tcattccggt tgcgacattt
     1321 gataccattg atgaagcgat tcgcttagcc aatgattgtg aatatggctt aacctcttcg
     1381 gtttacacgc aaaatatcaa taaagcgatg aaagtaattt cccgcttaaa attcggagaa
     1441 acttatgtaa accgtgaaaa ctttgaagca atgcaaggct accacgccgg ttggcgtaaa
     1501 tcgggtattg gcggtgctga cggtaagcac ggcttagagg aatacctaca aactcaggtg
     1561 gtttatctgc aatttgatga taaagtatag attcttctaa aaactcccac ttatcaaaat
     1621 aagcgggagt tttcttttag gttaaccttg tatcaaaatt gcaaacaaaa atattctaat
     1681 gttaagtaaa tgtttaataa ttatttatgg ttaactcttt ttggctaatt aatttgcaat
     1741 ttaaattaat tgagtgcaga atgccattag ccttttttga aatcacattc cataaaatgg
     1801 cttgattaac acaacacaat tatcactcaa attaggattt tcattatgag tattttccaa
     1861 caaaccaatc caaaccgccg tcgttatggg ctagctgtat ttatcgggat tattgccggt
     1921 attatttcag cattcgtaaa atggggggca gaacatcctt tcccacctcg tagccctatc
     1981 gatctgttta ccgctgcttg cccgcaacct gtgttagatg caatgaatgc cgcagcagac
     2041 caagtggctg ccaaaaccat cgcattacaa gaatgttcac gtgcattttt aaacccacca
     2101 cacgttttct tacgtgatta tattggtatc gatccaactg aagcagcatt tacctttgct
     2161 gaccacgcgt tcaactggat tggtgtcacc catatgattt tctcgttagt ctttgcgatt
     2221 ggttactgca ttgtggcgga aatcttccca aaaattaaat tctggcaagg tatcggtgcc
     2281 ggtatcatcg ctaatatttg tgttcactac atcaccttcc cggcattagg tttaacacca
     2341 ccggttgctg aatggccgtt atatgaacac atttctgaat tagttggtca tattttctgg
     2401 ttctggacca ttgaggtgat tcgtcgcgat ttacgtaacc gtattacgcg tgaacctgat
     2461 gccgaagtgc cgttagatca accgttccgt taatttaaaa ttagctcgat ttatacaaaa
     2521 gccgcaatca cgttgcggct ttcttatttt acaagcggtc aaattttcat gaaaatttac
     2581 caaacaaaaa gcacattgtt tcatgtagca atgcggagct tggctttata agaaaaatac
     2641 accaagttgg aacagttttt caatttcatc gatctgtttc ttatcgttca caaaaataat
     2701 cacacggtca ttttctgcaa tcatggtgga tttgtgggcg ataataactt cttcgcctcg
     2761 caccaccgcc ccaacaattg ccccttgcgg tagttttaat tcacggattt gtcgtccaac
     2821 cacttttgaa gtggttgcat cgccgtgagc gataatttct accgctcctg caaccccaag
     2881 tttgagtgaa gaaacttgta aaatatcgcc ttttctaacg taactagcga gagcagaaat
     2941 agtagcttgt tgtggggaaa tggcaatatc aatagtgcca ccttgaatca ggtgtaaata
     3001 ggcagggcgt tgcactaaaa taatcacttt tttcgcccca agccgttttg ccagcagggc
     3061 ggacataata ttcgcttcat catcactggt gacggcaagg aataaatcaa tattctcaat
     3121 atgctcctca aacagcaact cttcatcgga ggcatcaccg gtaagcacca tcgttttaga
     3181 tagtttttct gctaattttt cggctcgaac cggattgcgt tcgataattt ttacccgata
     3241 ctgatcttct aaatcccgag ctaacgaaga gccgatgctc cctccaccga caatcataat
     3301 ccgcttatgt gggcgatcaa gccgttgtag ttcactcatt actgctcgaa tatgttgggt
     3361 tgcacagatg aaaaagactt catcacctgc ctcaataata gttgaacctt gtggcacaat
     3421 cgctttgtct tggcggaaaa ttgccacgac ccgagcatca atatgcggta aatgatcacg
     3481 cagggctgaa atcgggtaac cgaccaaagg cccaccgtaa taggctttta cattcacgat
     3541 actgactaac tcatcagcaa aatgagtaat ttgcaacgcc cccggatagt gaataaggcg
     3601 taaaatatct tctttgacta aaatttcagg ggcaataata tggtcaatag gcaatacatc
     3661 atcattaaac aaccgctctc gttctctcac ataatcagca ctgcgaatac gggcaatttt
     3721 ggtcggcaca ttaaataaag tgtaagcaat ttggcaagcg atcatattca cttcatcact
     3781 attagttaca gcaactaata gatcagcatc acctgcaccg gcatcacgca aggtttgagg
     3841 tgaagcatat tcgccccgaa tcacctgtaa atcgtgttta tctttgagct tgtctaaacg
     3901 agttgggtca ttatccacca agacaatatc attgtcttca ctcaccaaat tttctgccag
     3961 cgtagaacca acttgtcctg cccctaaaat aattactttc attactctgc tactttttgt
     4021 agttttgcgt agaagaaacc atcaccaccg tttggttgtg ggaagaactg tttttctaac
     4081 actttttcgc cgttaaaatc gatttcaagt tgttttgcat tcggtgtatc ttgtaaaaac
     4141 cgttgaattt gctcgctatt ttcttgcggt aacaccgagc aagtggcata taacaaaatg
     4201 ccgtttggct ttaacctttg ccataacgcc ttgagaatct caccctgtaa tgtggctaat
     4261 tctgcaatat caccctcttt acgcaaccat ttaatatcag ggtggcggcg aatgactccg
     4321 gttgcggaac aaggggcatc aagtaaaatg cggtcaaaca gcacaccctc ttcaagccat
     4381 tcctcaggtt tggaagcatc gccacaaatt acctgtgcaa tctgccccag tcggactaag
     4441 ttttcacgca ctcggcttaa acggctctct tcaatatcca acgccataac ctttgctttc
     4501 ggtgcttttt ctaaaatatg ggtagttttg ccacccggtg cggcacaggc atctaaaacg
     4561 gtttcaccat tttctgcccc gagcaactcc gctgaccatt gtgcgtgagc atcttgcacg
     4621 gttgcccaac cttgctcgaa atgtggcagt tggttcacat ttaccgctct ctccagcaat
     4681 aaagcacact ttggcacgca agcggtcgga ttttctgaat tttttgcaaa ttcaggctca
     4741 accagctcgc taatcaacgc cgcataatca ttggtcttga tatgttgttg attgactcga
     4801 atccacattg gtgggcgttg gttgtttgct tcaacaattt ctcgccagtt cggataggct
     4861 tttttaagtt tattgaccaa ccattcaggg tggagcgttt gccaatgttt atctaccttc
     4921 gctaagattt cttcttgctc tcgcagaaaa cggcgtagca caccgttagt caaggctcgg
     4981 aagctatcca gttttagcgt tttagttgca ttcactacct catcaaccgc agcgtgtgcc
     5041 ggcactcgca tataaagcag ttggtataaa cccactaaca gtaagcaatg caccaaacgg
     5101 gttttgcctt tcagcggttt ttcaactaat aatttgatga tcgattccaa gcgaggcagc
     5161 acacggcaca ctccgaaggt gatttcttgc actaagggta aatcttttgg ttcaagctgt
     5221 ttttgagcgt caggaatcaa ggtggaaagt gatttacctt gatctaacac ctgtaaaata
     5281 atggttgcac ttattgctct agaagaaagt gctttgaacg attgtttttt cataaataaa
     5341 aatgccattc cgacagaatg gcactattgt aactgaatgc gggattatct taaaactaaa
     5401 attggcttgg tggtgttgcg agccacttta accgtattag agcttaagcc cttcgcattt
     5461 ggtttgctgc ttgccagcat cataattaaa tccaccgact tttcatcggc aatacggcaa
     5521 atttcttcat aaatcgtacc atacgccaca atgtgctgca cttttgaacc ttcaggaaaa
     5581 tggtttttgg taaattcgtg caatttttgg tttgcttcag ccaccacttc tttatcgaaa
     5641 tttttcggca agaatgcaga aattaagctg ttatccaccg gctcaataat agacacaacc
     5701 cgataaaccg cattcggatt ttttgccgtc atttgtaatg ccgtatctac cacatattta
     5761 gcacttttta ggtcggctaa atcaatcgca ataagtaatt tgttatacat atttattccg
     5821 taggggcagg tcctgtgcct gcccgaatat taactaaaat agcggacggg cacaggaccc
     5881 gtccctacat agcatataaa tactatgcaa taacacactg ttttttcact ctacggcgtt
     5941 ggtttgccac aataccaaat accaacaata gagcaggaat gaagatccaa tctttagaag
     6001 gagcatcttg cggtacggca atgtagtgaa tggtttgatc ccagtttaag cctgctttag
     6061 ctgccggaga atccatttct accatatcaa tcaccacttt tggtgtttct acgccatcaa
     6121 ctttgatttt ttcatcggtt tgaattagcg ttaagcctaa gtttttcaaa cgctcttcgc
     6181 cggttgctcc ttccggtaca ggtaattgag cgtagaactc aatttcttta ccgtaagggt
     6241 ttaatccctc tacttttaaa gtaacatttt gacctacttt gcttgcaagc aactgttctt
     6301 caaactgcac cggctcgata tgacgttcag acggataaat tctgtccata aagaagcccg
     6361 gacggaacaa ggcgaaagcg gctacaacca gcaacgccgt ttcccaccat ttgtttttag
     6421 tcacaatata ttgcattgta gcagaggtaa aggcgagaac cccaacagtt gcggtaataa
     6481 acacaaccca gccgtgcccc ggataacgca gatcaattaa taataaatcg gtattaaaaa
     6541 taaataagaa cggtaaaatg acggttctta aactatattt aaatgccacc ataccggtat
     6601 taatcgggct accgcctgaa attgctgccg cagcgaacga ggctaaacca acaggtggag
     6661 tcacatctgc cataatccca aaatagaata cgaataaatg caccgcaatc aacggcacga
     6721 ttaacccgtt ttgacgaccg acttccatga taaccgttgc cattaatgat gacaccacaa
     6781 tgtagtttgc agttgtcggt aagcccattc ccaaaattaa gctgaatacg gctaccaaga
     6841 tcaacattag cacaatgttg cccattgata ggagttcaat cacacttgaa agctgaaccc
     6901 caaagcccgt tagtgccaca acgccgacaa taatccctgc tgttgcggta gcgagggcga
     6961 taccggtcat attacgaccg ccagcctcaa ggctatctac cacatctcga acaccttgtt
     7021 tgataatctc tttggttacg ctctctttac ggaagaaatt cagtaacggg cgttgggtta
     7081 attgaataaa aattaaggta atggttcccc agaatgcgga taagcccggc gaaagcattt
     7141 ccaccattaa gcaccaaagt agcacaacca caggaataag gtaatgtaaa cctgcattta
     7201 cggttggttt tctttttggt agagaaacaa tttctgagtt tggatcgtcc gcttctaaat
     7261 cagggtagct tgccacacgg cgaatagcca gtagatacca taagcctaag aaagcacaga
     7321 caatcataaa cgcataatct tctgccacat cacgaatcca acctaagccg tagtaaacgc
     7381 caatcgctaa tcctacgatc actaaaattg aagctacggt tcttagcaag aagactaaaa
     7441 tcgggcttgg ctcttcggct cttggtaagc cttgtaaatt catcttacaa gcttctaaat
     7501 gcacgatata caccaacgca atatacgaaa ttaacgcagg taagaaggcg tgagtaatca
     7561 gctggctata cggcatattc acatattcga tcatcaagaa cgctgcagcc cccattaccg
     7621 gtggcataat ttgaccgttt actgatgagg caacttccac cgcaccggct ttttctttgg
     7681 taaagccgac ccgtttcatc attggaatag tgaatgtacc tgtcgtcacg acgtttgcaa
     7741 tcgaagagcc tgaaatcaag ccggttaaag cggaagaaac caccgccgct tttgccggac
     7801 caccacgcaa atgccctaaa taggcaaagg cggttttaat aaagtagtta cctgctcctg
     7861 ctttatcgag caacgcccca aataatacga acaggaacac atatttggtc gaaaccccaa
     7921 gggctacacc aaacacgcct tcagtggtaa tccattgttg gttgataatt tgagaaagcg
     7981 aacctgagcg gtggcttaca atccaatctg ccgggaaata ttgcccgaag aagttataga
     8041 tcaggaatac aatcgcaata atcacaagcg gtaagccaag actacggcgg gtcgcttcca
     8101 gcaccaataa aatccctaaa cagccggcga taatatcttg cgtatttggc gctccaaaac
     8161 gtttcaccaa accttcatag aagaaaatat aatacaacgc taacccagct cctacgatgg
     8221 caaacaccca atctatttta ggaatatgat gtttaggcga gctggcaaaa gcagggtaag
     8281 ataggaacgc caagaacatt gcaaaggcta agtggataga acgggctttg gtgtcgtcca
     8341 ccaccacatt caaattaatg cctgcgtgag taagccattc ttggaataca aacggcaatg
     8401 gagaagcata ataaatttgg aacacagacc aaagaatggc gacatacaca atggcttttt
     8461 tcgcaagacc ggacggggtt cgccccccac tgtcattgga ggcaaccata tcttgtaggt
     8521 catcgtaatc aaccttagat tcaactgaca taaagactcc tcaaaacgca agcggtcatt
     8581 ttcttattaa attttacaaa tttcctcaaa aaacaaccgc ttgctcgtga aaacactgtt
     8641 gataagttat caattaaagg tgaaaatcga taacttatca acagtttcaa aaaagcaaaa
     8701 aaccagcacg ctaaaaaacg tgctgattga atcaaattac agaaaggaaa tattacttaa
     8761 tccaaccttt ctctttatag taacgaattg caccttcgtg taacggagca gaaagggcgt
     8821 ttttgatcat ctcttcttgt tttaagtgtt caaacgccgg atgtaaacgt ttgaaacggt
     8881 cgaagttatc aaataccgct ttggttacat tgtacacttt atctgcatcc acatcggcag
     8941 aagtcactaa cgttgcatat acaccgaagg tttctgtcgg ctcatccgaa cctttatata
     9001 aaccgcccgg aatcgtagct ttggcataat atgagtgatc tgccactaat ttatcaattt
     9061 cagggccggt taccggcact aatttcgcat cgcaagaagc ggctgcttct tttaacgcac
     9121 cattcgggtg acctacgtta taagtgatgg catctaagtt gttatcacac attacagatg
     9181 ccatttctgc cggtttcaat tcagaagcca ctttgaaatc tttatccgtc cagccttttg
     9241 ccgctaaaat cacgttcatt gttgcacgag taccggaacc cgggtcgccc acgtttacac
     9301 gttttgcttt taaatcatcg aacgatttaa tgcctgaatc ggtacgagcc attactgtaa
     9361 acggttccgg gtgaagcgag aaaatggcac gaattttatc gtttttctta ccttcaaatg
     9421 agcttgagcc gttataggcg tggtattgcc agtctgattg tgcaatcccc atatccattt
     9481 cttttgctgc aatcgcattt aagtttgcaa ccgatgcccc tgttgaagga gcgttacatt
     9541 ttaaacctgt ttttgctgaa tcacggttta ctaattggca aatagattga cccacaacat
     9601 aataaacacc ggtttgaccg cctgttccga tagtcacaaa tgtttcagcc gcttgaacag
     9661 atgctgttcc catcacaagg cttgcaagga aagaaagttt gactaatttt ttcattttta
     9721 actcctaaaa ttaaggatca gaaaacaaag atttattgtt ttgagccact gctcacacta
     9781 caagagatac aaaacttctt tgagttgcat ttgcctctta gagcttgttt ttagcataga
     9841 ttttataatt agtaaattta ttttttcgca taaaaaaatc tatgcctaat gccacaagct
     9901 aaaatgtttc actatctctt aacaaatgca catcgccttt tcgtcttaaa aaaccgctac
     9961 gatcaaaata ttcaattaat tgtaccgtca attttcgccc atactgcaac tcatctcgca
    10021 actggttcac cgaaatgctg ccgttttggg cgataaaatc tttaattaac gttgcaaatt
    10081 gcccgatttg ttcgcttaat aaaaatctat ctttgacgat tgggattaaa tagcccaatt
    10141 tcccgacttt atacagcaaa ttccgcattt gggtttcatc aatcgagagc tggcttgcaa
    10201 tatccctcac ccaaagagct tgattggttg cctcaaacag cggtcgaatt tgttgccaaa
    10261 tttgcaattc atcggcgttc aattcgattc gatgttccgg caaatgtaac caaccacgac
    10321 tattgaccaa ggctttttgc tccaccaaat cctcaataaa ttgatttgcc aagttttcag
    10381 gcaaatccaa taacgctatg cgatataaac gagctttggt cacgccgatt tgatcttgat
    10441 gttgcaggtg gtattctgcc attttttcca acacccgttg ctgggcttga gctttaaaat
    10501 ccgaattaaa taaccattta gacgagacat caaaccccag ttttgcaata tcctctgcaa
    10561 aacattgctc cgcccataac agcaaggata aatccatcgc tctgttttgc agatagagat
    10621 caaggcgtgt cgcaaagtca ttacaagcgg tggtttttgc taaatttttt accaaagcta
    10681 aacgggcttc ggtacgttta tgccgttttg gtgagtgaat ttccagcacc tccgctccgg
    10741 ctaacgttag gctgtcatca ccgctgcgga tgatcaactt atcaccaacg gcaatatgaa
    10801 gtggttcatc taaaatcact tctgcaaaaa attgctgatt tttgaccgct tgttgcccct
    10861 caagcaaatt caatttgccg gtaatgtgcg aagcaaaatg gtaaagatgc acaatgctgt
    10921 tttctttgaa ggcttgattg gcagtgagtt gaaccgtaat gcgatcggtg gcaaatttcg
    10981 gctcaagctc ggtaatccaa tcgcctcgct tgatttcctc tttttccacg ttagcgatat
    11041 ttaacgccaa acgttgccct gccactcccg tttccgaagg cgtattttgg gcgtgaatcg
    11101 ctttgacccg cactttttta ccattcgaca aaaataactc agagccaacg ctcacttttc
    11161 ccgccaccgt tgtgccggta acgaccaacc ctgctccttt cacattaaac acacggtcaa
    11221 tcgcataacg gaacggttta tgggtttggg tatgttgttg atttaattga attaaatgtg
    11281 cttttaattc ttcaatccct tgttgcgttt ttgccgaagt aacaaaggtt tttgcttccg
    11341 ctaaaaacgg atagcttgtt ttcacttgct caattaagtg gctgatttga gtttcttccg
    11401 cccgatctgc cttagtaatc acaatcataa tatgctggaa attcagcagg tggagaatat
    11461 ccaaatgctc ttcggtttgt ggcttaatcc cttcttcggc agaaatcacc aacagggcgt
    11521 gttgaatgcc gccaagccct gccagcatat tagataaaaa acgctgatga cccggcacat
    11581 caataaaccc taaaatatcg ttctcaatcg gtaaataggc atagcccaaa tcaatggtta
    11641 gcccacgttt ttgttcttcg ggcaaatggg cggtgttagt gccggttaag gcttgtaaaa
    11701 gcgatgtttt gccgtggtca acgtgaccgg cggtgcagat gatcattgat agtccttata
    11761 aaaatgagta actattctgg cgagcagatt taaaatctac aatatagaca ttttcctgac
    11821 caatcaggaa ctttacttgg tacttaccgt ttaaaatggg aatttctttt ttcttgcgaa
    11881 gtcgataaac atcggcagta aaggaaagtt tatccacttc actttttatt gcatcataaa
    11941 attgttctgc aataatcggg ttttgggatt gttgtaatat ataatctgct tgataaaaca
    12001 attttatttc tgctttctgt agccaaacaa tattgtaatc aaacttcatc atttttccgt
    12061 gattcccaat tttttgcgta aatcttccat cacctgagcg tgggatttag tttcaattaa
    12121 gccattttct aattgatgta ataaatcaag ttcatcatta gtataaaaac tttgtggctt
    12181 atctgtgcgt aattttgcta aatcttgtgc gagtatgagt tccatatttc ccccttacaa
    12241 acttagatta ttcaatattg taacctgata aaactaaagt tcaaggagtg tatttaaggc
    12301 gataaccgct cttttttcca ctcattattt tccaaccaat aatgaatgcg gtcgtgtagc
    12361 cggctacttc tgccttgcca gagttcaata ctgtcgggaa tcagaatata gccaccccaa
    12421 tgcggtgggc gaggcactga aagtggatat ttcaatgcaa attgagctga ttttagcaac
    12481 aaagccttgt agttttcgat aggctgactc tgctcgctcg cccaagcccc caaacggctg
    12541 gtgtaaggac gagagtcaaa ataggcatcg gattctgcct ctggaatttt tgctattttc
    12601 ccttcaatcc gcacttgacg ttgtaattct gcccaaaaga aggttaaaca tccaaaagga
    12661 ttatcggcaa tttcccaccc tttacggctt tgataattgg taaagaacac aaagccttgt
    12721 gaatttacct ctttcaacag caccattcgg ctacttggtc gcccgtttgc tgcaacggta
    12781 gcaatattca ttgctgtcgg ctcattcact ttggcattga ttgcctcact caaccattgt
    12841 tcaaattggg tgattgggtt tgagtgacaa tctcggattg aaagcacttt tttggtgtaa
    12901 tcttctcgaa tgtggtgcag atccataagg attcctttat cttattctaa ataatcggac
    12961 aggcacagtc tgccctacca aaattaatat tccaacatct caatcaactt atcaaactcc
    13021 gcgaccgagc gtaaatctaa ccaaaatttc tgctgagcaa aacgcccgat aatcgggctt
    13081 gggtaggttt taaattgttg ttccaatgca attaaatcgc tctgtttttc agcggaaata
    13141 gtcactgcca ccgaaggtaa ggtttctgtg ggtaacgcac cgctgccgat ttgagcgagg
    13201 cttagctcaa tttgcaaaat ataagcagaa tttaaccgct tgtgtagtgc ctgttttaat
    13261 cgctctgctt tgtgttgcaa ggtttcaagc ggttgagtga gtaaatgaag agtcggcaag
    13321 ttatcggtta attgctccgg aaataagtag tggcgtagcg ttgcctcaag tgccgataaa
    13381 atcactttat cgcaacgtag cacccgtttt agcgggtgtt gttgcagttg gctaatcatc
    13441 gcttggctac cgacaataat gccggcttgc ggcccgccta ataatttatc gccagagaag
    13501 gaaaccaaat ctaccccagc cgctactttt tgctgaacct ttggctcagc aggcaaatta
    13561 agagcttgca tatcagttag cgaaccactg cctaagtcgg taatcacagg caggttaaac
    13621 tctttaccga gagccaccaa ttcctcttcc gacaccgaac tggtgaaccc ctcaatgtgg
    13681 tagttactgg tgtgaacttt cattaaaaag gcggtatttt cggtgatcgc gttgcgataa
    13741 tcctttaaat gagtgcgatt agtcgtacca acttccacca atttgcaacc ggcttgagcc
    13801 ataatatccg gaatgcggaa tgccccgcca atttccacca gctcgccacg ggaaacgatg
    13861 acttccttgc cttgtgcgaa ggttgctaac atcaacaaca ccgctgccgc attattattc
    13921 acaatgcaag cggcctccgc tccggtaagt atttgcaaca actcggaaat gtagttatct
    13981 cggtgcgagc gcttgcctgc ttcaatatca aattccaacg ccacattgtt tcgcattgcg
    14041 ttggttgctg cctgtatcgc cttttccgac cacaacccac gccctaagtt ggtgtgtaac
    14101 accgtaccgg ttaagttgaa cacggaacgg attttcacct cactcaacgc ttgcactttt
    14161 tgttccagcc ttataaaaaa caggttttca tcggcaataa aatccggcaa ggcttgctgt
    14221 tgggaaataa attgacgtgc ttgagtaagc aaactcctag cttgttcagc cacgctggaa
    14281 tatgcaaatt tttggcataa ttcgaccgct tgtggctttt tcaacaagag gtcgagcgag
    14341 ggaatttggc gaaatagttg ttgcataatg tgaatgattg agagaatatt ttggacaatt
    14401 ctaataaata aagtacaata ttgccaattt ttcggaagtg cgtcatctcc ggtgaggtgg
    14461 caggacttca aatcctgttg aggacgccag cgttctcggg tgggttcaac tcccatgcac
    14521 ttccgccaca tttcaaaagc cgttaatctt taacggcttt ttgcatttct gccacattct
    14581 ctctttccgt tttgataaaa aatgagactt agctcacatt tttttatttt tctgtttgta
    14641 gtaaaaattt attaaattat aattatttgg agtatttttt cacaaacaaa atctagtcca
    14701 ttgactacct tttgaacata aaaaaggaac tgttatgtca acactatctc gtgattctat
    14761 tttaagtcaa attcaaaacg ggctgattgc ctcctgccaa ccggttgatg acggccccat
    14821 ggataaacct gaaattgtcg ccgcaatggc agcagcctct gtgattggtg gtgctaaagg
    14881 cattcgcatt gaaggtgtcg ataatttaaa agccgctcgt gcggcagtga atgtgccgat
    14941 tatcggcatt gtaaaacgtg atttgccaga ttcccctgtg cgtattacgc catttttaga
    15001 agatattgat gccttagccg aagccggtgc cgatattatt gcggtggacg gcacattccg
    15061 cacccgcccg gtcagcattg aagaggcggt aaaacgcatt cacgaaaaag gttgcttggc
    15121 aatggcggat tgctccaccc ttgaagaagg tttacattgc caacaattag gctttgatat
    15181 tgtgggtagt acaatgtctg gctacaccgg tggcgaaatg cctgatgagc cggactatca
    15241 attagtgaaa gatttaaaag ctgccggctg taatgttatg gcggaaggtc gctacaacac
    15301 gcctgaactg gcaaaaacgg cgattgaaat cggggcggat tacgttaccg ttggatcggc
    15361 attgacccgc ttagagcata ttgtgagctg gtttgccgac tctgtaaaat cggctcaaaa
    15421 ataggagctg cttatgcgtt gtttagcaat agacatcggt ggcacgaaaa ttgccacggc
    15481 aattgtgcaa cacaatcaag tgtcacaacg ccaacaaatt cagaccccga ctgataaacc
    15541 acaagctgat caggcaggca gtttgcatca agcgattggt gagataatgc aacattatca
    15601 agggcaattt gattttgtgg cagttgcctc aacaggcatt atcaataaag gggtgcttac
    15661 cgcattaaat cctaaaaatt taggcggatt ggcagaattt ccgttgaaac aaagcattga
    15721 aaaacatacc gataagccga ttgcattatt aaatgacgtg caagcggcgg tgtgtgccga
    15781 atatttaaat gaagaccaac aagcggtcaa aaattttgta tttattaccg tttccaccgg
    15841 cgtaggcggc ggcattattt taaacggcga actgcaaatc ggcagtaacg gcattgcagg
    15901 acatatcggg catactctag ccgatccgaa cgggcctctc tgtggttgtg gacgagtcgg
    15961 ctgtgtcgaa gcagtcgcag cagggcgtgc aatagaggca gtttccagcc aatgggaaaa
    16021 gccttgttca ccgaaagagg tgttcgagcg attccgccaa ggcaacccac aagcggtcga
    16081 attagtacaa aaatctgcaa aagcgattgc taatttaatt gcagatttaa aaatcagttt
    16141 agatatacaa aaagtggtgt taggtggcag tgtgggctta gcggaagggt atttaccgca
    16201 ggtgtccaac tatttagctg aaatgccgag cgtatatcat tgcgtattgg aaaatgctct
    16261 atccgggcaa gatgccggct taatcggtgc ggcttggtgg gcggaaaacc aacttaatca
    16321 aggttttact ctttaacaaa ttctaactcc ggagatccaa atgaaaaact taaaaggtat
    16381 ttttagtgcg ttactcgtct ctttcaacga agacggcacc atcaacgaaa aaggcttacg
    16441 ccaaattatc cgccacaaca tcgacaaaat gaaagtggac ggtttatatg tcggcggttc
    16501 aaccggtgaa aactttatgc tttctaccga agagaaaaaa gaaattttcc gcattgccaa
    16561 agacgaagcg aaagatgaaa tcgcccttat cgcccaagtc ggtagcgtaa acttaaaaga
    16621 ggcggtagaa ctgggtaaat atgccacaga attaggctac gacagcttat ctgcggtcac
    16681 accgttctac tacaaattca gcttcccgga aatcaaaaat ttctacgaaa ccattattcg
    16741 tgaaaccggc aacaaaatga ttgtttactc cattccgttc ttaaccggcg taaacatcgg
    16801 tgtgagccaa ttcgctgaat tatttgaaaa cgaaaaaatc atcggtgtaa aattcactgc
    16861 cggcgatttc tacctgttag agcgtttacg caaagcgttc ccgaaccact taatctacgc
    16921 aggtttcgat gaaatgatgc taccggcaac ggtattaggt gtggacggtg caatcggctc
    16981 aaccttcaac gtaaacggta ttcgtgcaag acaaatcttt gaattagccc aacaaggcaa
    17041 aatcaaagaa gcatttgaaa tccaaaatgt aaccaacgat ttaatcgaag gcattttagg
    17101 caacggttta taccaaacca tcaaaggctt attggagtta gaaggtgtgc aagcaggtta
    17161 ctgccgtgag ccgatgacga aagaacaaac tccggcacaa aaagaagtga ccaaacagtt
    17221 aaaagctaaa ttcttgtaat ttaagttgca aaaggctaaa cgaaaatcac cgcttgtagt
    17281 aacaagcggt gattttttct caacgacttg caattaatga agccattctg ctttttctac
    17341 cacggtgtaa cgtgtcacca ttatatttta atcgcacttt ttcttggcga gtattttctg
    17401 atttcaactc tctacctata tcataaaacc ctgtactcca gatattttga gtaatatccg
    17461 cttttacaat aatatcattg aagccgttgg tctgtttgtt atccatttgc aataccaagt
    17521 ttgtgtttcc gttttggttt ctttatcatc taaaatagac caaaaagtca tcgggtaatc
    17581 aaaaacaagt tttaactttt ctttttccgg cacaaataac atcaaatgat catttgcaga
    17641 atactcagga gcacttggac cacgagcagc attattaaac ctcacgccga aagctcttac
    17701 tttgtcgttt agaatataac gggcggtatc aattttaaga ctatctgcat tcacatcgat
    17761 agaggcatcg atctccatat cctgctccca cgattgcaat atcgcattat cattcacacg
    17821 agcaacaaaa agcgtccact taggtgtgtt ttcgtcgttt tgataatttt ctttgctgta
    17881 tttaggctct attaccgcat aactcactaa ggtttccgtt gaattgttag gagctgtttt
    17941 acaggcagaa gctaaagtac gagcagaaag tttctcttga gaaatcttaa agtaatgagc
    18001 aataatttga tgttgttgct cagcacaaac ctgtgtgtta ttaccttcat ctgcttgagt
    18061 tgcaagcgta agtaaaagaa ctaagaggag tatctttttc atatagattt atccgtatag
    18121 aaagataact cattctatgg ggtactgact ctttttgcat agagagaaag aaaaaaattt
    18181 ggtcggaaaa ataacggcga gcctagcgaa aacaagggtt cgccgtaatt ttatggggga
    18241 agctatgtaa aaaacaaaat gagcaggatt agaaaaaaat gagcagtttt tgcgatattt
    18301 tttgcatagg tttgatcggt tttaaaacta ttttaaatct gttttaaact aaagagtgtc
    18361 cgatgtggac tacctgcccg atgatttgga ggttttgagc ttcttcggcg gtaatctgta
    18421 ttgggcggta ggactcgtta tcgctaatta attcaatata gtcccattct tttctaatcc
    18481 gtttaaccca tacgctttcc ccattctgca caagataaat cttatcatca ccacgaggct
    18541 ctcgtttgct gaaatctacc agcatttggt cactgtctgc aatggtaggg tgcattgatg
    18601 ttccatttgc ccaaaacacg ccgcagttgt gggcttttac gccgaggctt tgcagcaggc
    18661 tgtcggcgta aggttcttgc ccgtctggct tcgttacgcc ctcgttaaag ctgccaaagc
    18721 ctgctgaaac gttgattgtt ctgaagctgt taatcattga aacaatatca tcagccattt
    18781 tttctagtcg ctcaaactct cttgccacaa tactggtatt ctctgattgt ggtttgcttt
    18841 ccttacctgt tgccagccat tcaaggctca catttgacac ctctgctatt tttacaagat
    18901 ttgaacgaga tggatctgcc tctcctttta cccacctaga tagtgatgct tgggctaccc
    18961 ccactgctct tgcaaactca ctgtaattgt ccttaaagct attttttgca atccatttca
    19021 ttctttctga gaagctctca tcgtaaatgt ttggtttact catcttttac gtttccatta
    19081 at
//
LOCUS       DANLXB010000027        18882 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLXB010000027 DANLXB010000000
VERSION     DANLXB010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18882
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            188..1648
                     /gene="xseA"
                     /locus_tag="PXD41_000620"
     CDS             188..1648
                     /gene="xseA"
                     /locus_tag="PXD41_000620"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL6288181.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            1960..2045
                     /locus_tag="PXD41_000621"
     tRNA            1960..2045
                     /locus_tag="PXD41_000621"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1994..1996,aa:Leu,seq:caa)
     gene            2143..2967
                     /locus_tag="PXD41_000622"
     CDS             2143..2967
                     /locus_tag="PXD41_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL6288182.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTTIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETISQLCALLMPQFANSHFSA"
     gene            2979..4340
                     /gene="dnaB"
                     /locus_tag="PXD41_000623"
     CDS             2979..4340
                     /gene="dnaB"
                     /locus_tag="PXD41_000623"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6288183.1"
                     /translation="MSSLNKSLVQPHSIEAEFSVIGGLLLDNELFDEVSSKINEGDFY
                     NFTHRLLFKHISELIEAGKPADILTLDQYLTQKKVIEDLGGFAYLAEIVKNTPSTANI
                     HAYTDIVLLYSKQRQLLKLGQFIVDQTQSAKTPDKFEAVVDDIEKKITEFSLSDNTKS
                     AADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLKKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADSLDDEE
                     WSKLTSAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSVEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEVYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            4349..5995
                     /locus_tag="PXD41_000624"
     CDS             4349..5995
                     /locus_tag="PXD41_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6288184.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLGKSLSSRELSSELENDGYIISHALILKMERCVNYLYPHIPEVLF
                     SGLGHTQIDKLLAIRNNAEEVWAAHQFDTDVTFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALEGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQT
                     AKSEPLIKNENKAVTPQKAQHIIDEVIDDNESDDEQNNAITDLSQLGSSLLDNQDNQE
                     DYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEAY
                     SLALDIAESMGIDHLVEHIVKQPVDYTYAMKPADTELSPSALTLYSFLSMLQTAEHKD
                     ENSCVLDSKFLFELDDLTLVKIFRLIRVSRHIRQQGGEND"
     gene            5988..6545
                     /locus_tag="PXD41_000625"
     CDS             5988..6545
                     /locus_tag="PXD41_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL6288185.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMEILDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            6704..7894
                     /locus_tag="PXD41_000626"
     CDS             6704..7894
                     /locus_tag="PXD41_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288186.1"
                     /translation="MFSSTNKPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLITD
                     KTKWHYVSHLDCLQSRYQIYQQQQLVKDKQPSQTEQELSKIQQNILTSTMEVRDFDEE
                     VRKKSSKNQTSNKGVRAKNEDKSLILDLLPLGKSDVQYRTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEVQQRIIQKQDVKKPKGYLYTLIQRAKQG
                     EFKPYYFELGKNLPSQNQANNNSAHSIQKLTEQPTEKPVLTSADREQMASRMQKFRAE
                     LLLQ"
     gene            8073..8831
                     /locus_tag="PXD41_000627"
     CDS             8073..8831
                     /locus_tag="PXD41_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL6288187.1"
                     /translation="MTTQLDPQLGPLRSEITFTLHTQYAHKLWVGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKSSGITRRDYQEKNARYQAAIKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNTTVEEEQSVETHITAQTNESQK"
     gene            8840..9325
                     /locus_tag="PXD41_000628"
     CDS             8840..9325
                     /locus_tag="PXD41_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL6288188.1"
                     /translation="MNLISDEIYRQLVKDSGLNTSLKQLFSHFDTGSDYELLQEQFTQ
                     ARAYFMAAQDSMVQSVRQDLSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDKSVPVEVRKKVVAVEKDRILINMQISVFNHILRQLADCAEKLKEVDNAVAKSDLN
                     S"
     gene            9681..10133
                     /gene="ssb"
                     /locus_tag="PXD41_000629"
     CDS             9681..10133
                     /gene="ssb"
                     /locus_tag="PXD41_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6288189.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEGKLRTRKWQDQNGQERYTTEIQG
                     ELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF"
     gene            10440..10628
                     /locus_tag="PXD41_000630"
     CDS             10440..10628
                     /locus_tag="PXD41_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288190.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
     gene            10669..10971
                     /locus_tag="PXD41_000631"
     CDS             10669..10971
                     /locus_tag="PXD41_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288191.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            10971..12281
                     /locus_tag="PXD41_000632"
     CDS             10971..12281
                     /locus_tag="PXD41_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL6288192.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(12377..13579)
                     /gene="tet(H)"
                     /locus_tag="PXD41_000633"
     CDS             complement(12377..13579)
                     /gene="tet(H)"
                     /locus_tag="PXD41_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL6288193.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLHIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
     gene            13671..14294
                     /gene="tetR(H)"
                     /locus_tag="PXD41_000634"
     CDS             13671..14294
                     /gene="tetR(H)"
                     /locus_tag="PXD41_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(H)"
                     /protein_id="HDL6288194.1"
                     /translation="MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWH
                     VKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQALLMYRDGGKIHAG
                     TRPSESQFETSEQQLQFLCDAGFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEREK
                     VETDTVAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVLKSAK"
     gene            complement(14297..14815)
                     /locus_tag="PXD41_000635"
     CDS             complement(14297..14815)
                     /locus_tag="PXD41_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288195.1"
                     /translation="MPFKTVTFAQATTNDGQSLLAVNDLFIGPKSHTSAQYILQWNGA
                     EEVQSSSGIIVSTGLGSTGWFQSILAGAMAITGEASHPLLQGFSWSDRKLQFSVREPF
                     PSRTTGVALTFGTIEPDSPLQLGSLMPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQ
                     GQLISQKGRQRI"
     gene            complement(14864..15043)
                     /locus_tag="PXD41_000636"
     CDS             complement(14864..15043)
                     /locus_tag="PXD41_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288196.1"
                     /translation="MFLVNQLLAITIATSAVLTNAQLAILAVAFWIAILPCARLATAV
                     GVWVFDDVVHNNSPN"
     gene            15132..15287
                     /locus_tag="PXD41_000637"
     CDS             15132..15287
                     /locus_tag="PXD41_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6288197.1"
                     /translation="MGLNRAEMMYREGAYVIDPVFPATLGYAGAGVVVAVGDDAGEFQ
                     IGDKVSV"
     gene            complement(15377..16924)
                     /locus_tag="PXD41_000638"
     CDS             complement(15377..16924)
                     /locus_tag="PXD41_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HDL6288198.1"
                     /translation="MKRRDFLRYGIGISLASSSLYSLANMMNHAQHGNMAMMHSVPTG
                     LMPTEAMPSGLSLNGILPKLANQSTQAGLFKATLKAEPIKIRLADNKETEFWAYNGQL
                     PGPQIEVFEGDTVEIEFINHLPQPSTVHWHGLDVPNEADGNPMDMVEPQGKKVYRFTL
                     PQGSAGTYWYHPHPHDHVSEQVYKGLAGTFVVKAKNDPLAHLPEQHWVISDLRLNADG
                     TIPANTMLDWINGREGEFVLINGQYQPQIQVKTNERIRLWNATSARYFRLNIPGVKWI
                     VVGTEGGLLEKPRSPVDELLLTPAERVEVIMVGETQGTVNLQSGYYDRRKMMVQEQPK
                     DLTLATIQVKSEPVQLPESLRSLPNWDEPKQVRQIRFSEKMMNHTNMPMMNHGTHHAT
                     TTLTDNPIPPMMNGMFLINGQTFDMNRIDFVTKLNEVEQWEIFNESHMDHPFHLHGTQ
                     FEVIQHTLNGKTFKPEGRALKDVVNLRPYEKVIIRFKQGHTGLKMYHCHILEHENLGM
                     MGMFKVE"
     gene            complement(16937..17392)
                     /locus_tag="PXD41_000639"
     CDS             complement(16937..17392)
                     /locus_tag="PXD41_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDL6288199.1"
                     /translation="MKLHKFTRSLLLLSLGITAFAQAQTLSMEVWKSPTCGCCNEWIS
                     YMQKNGFEVKVNETGNYDAHKRFNIKYEHASCHTAVIDGYVIEGHVPAEDIKRLLAEK
                     PDAIGLSAPGMPIGSPGMDGEAYGGRKDPYDVVLIKKNGESEVFKSYNQ"
     gene            complement(17574..17894)
                     /locus_tag="PXD41_000640"
     CDS             complement(17574..17894)
                     /locus_tag="PXD41_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288200.1"
                     /translation="MELKVIHKNLVDSAKIKLHAVYLVIFLFVSHFAMIFGMADPISA
                     GYQPTTPAMTHSMQMDAKQITEMHNQMMTGEITPEEMMKMHQEMNPNMNMPNTQGGHS
                     EHHK"
     gene            17893..18660
                     /locus_tag="PXD41_000641"
     CDS             17893..18660
                     /locus_tag="PXD41_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6288201.1"
                     /translation="MSKIIKIGKVANNSDAIDAISTQPRHSVIVGTIKRLQTDRIDLL
                     YQHRVDPNVPIEEVAGAIKDLMKQGKVLNWGLSEAGEKTIRKAHAIQPLTAVQSEYSL
                     FFRGREKDVILVCEELGIGFVPWSPLAMGALAGYVDENSRFEADPSKDLRGIIPRFTP
                     EAMQQNVKLIQLVQKWAKRKLCTPAQLSLAWLMAQKAFIAPIPGTSKARHLLDNLGAD
                     DVKFTEEELAQFRQELEAIEIVGLRLPEAILNFSEAK"
BASE COUNT         5841 a         3855 c         3948 g         5238 t
ORIGIN      
        1 ccgaaggtcg ctggttcaaa tccggccccc gcaaccacat tccaaaccct cgatagtgaa
       61 tcacatcgag ggttttcgtt ttatttgcca aaaaacagca aaaaataacc gcttgttgac
      121 tgcaaaagct tcctctcgct ttcatttctc gttacacttc tactacattt acgctttttt
      181 gattattatg agcaatattt taactgttac ccaactcaac tattccgtcc gccatttgct
      241 cgaaatggaa atgagccata tttggctaac cggcgaaatc tcaaatttca gccaaccagt
      301 ttcggggcat tggtatctca ctttaaaaga tgacaaagca caagtgcgtt gtgcgatgtt
      361 taaaatgaaa aatgtaagag tgaattttcg cccacaaaac ggtatgcagg tgctggtgcg
      421 ggcaagtgtt acactctatg agccacgagg tgactatcag ctcattattg agagtatgca
      481 accggcgggc gaaggcttgt tacagcagca atttgagcaa cttaaagcaa aactttcagc
      541 tcaaggcttg tttgctcaag agcataaaaa gccaattcct acttttgtta aaaccgttgg
      601 tattattacc tcctcaagcg gagccgcatt acaagatatt ttacatattt tgcaacgacg
      661 agatccgagc ttatcagtgg ttatttaccc ggctctcgtg caaggcaaag aagcaacgca
      721 agatattgtg aatatgattg aactggcaaa ccgccgcaat gagtgtgatg tattaattgt
      781 cgggcgaggt ggcggttcat tagaggattt atggtgtttc aacgaagaga gtgtcgctta
      841 tgccatttat cattcacaaa tcccgattat cagtgcggtg ggacacgaaa ccgatgtgac
      901 cattgctgat tttgttgcag atttgcgcgc accaacgcct tcggctgctg cggaattagt
      961 cagcagagat caaaatgaat tgaaacgcca attacaacat cagtttgata aagtgaattt
     1021 agcctttgac cgagtttgga accataaatt taaccgtttc caacaactcc ccttacgcct
     1081 gaatgctcag catccaagca aacaaattca atcgcaacag caacgttttg attatatgga
     1141 ataccgcctc gagcaggcaa tttatgcact tgttgcagcc aaaaagcagg tggggaaaga
     1201 gctaaatgtc cgtttaattc accaacatcc gcaaaagcag attgaacgcc aatcccaaat
     1261 gcttaagcaa ttggagctga aactccattg gcaaatggag cagcaactca gcaaaaaaca
     1321 gcaaaaatgg aaaaacatta cgcaacggtt tgaacgcaac ccgctacctt atcaacttta
     1381 tcagcaacaa acgatggtgg caaaaatgtc gcaacgcttg gcttattcta tcgaaaaaat
     1441 aatgctgaaa gagcagcgac attttcaaga gttatgcact aaacttgatg gacttagccc
     1501 attgaaaatc ttgaccagag gctactcaat tacccaaact aaagacggta aaacgcttac
     1561 ttcaacagaa aatattgaac gtggtgaggc tattatcacc caactaaaaa caggaaaaat
     1621 aataagtcaa gtagtggatt ttttgtaggg gaaattttga acgctgccaa tttttaaaat
     1681 tatttatagt aaaatcagta ggttaaatat ttataaacag ggttgttcac ttagttatcc
     1741 acaggtgatg tgcataacta tttttgtaaa gatgaattga gtgctgattt ttaaatcaac
     1801 cgatttcaaa aggcattttt acgcttgcac aagcggtcat atttccctat aatcgtgcaa
     1861 aaattaagcc agtgtggcga aatcggtaga cgcagcggat tcaaaatctt atgcgtaaac
     1921 tgataggaca tacaggcgat tgaataaaaa gcactcttag cctgagtgat gaaattggta
     1981 gacatgacgg attcaaaatc cgttggtgaa taaccgtgtc ggttcgagtc cgacctcagg
     2041 caccatttga atcacacttg tagtttctct ctttcaaata atcaattcaa atacaccgta
     2101 ttaatggcca atactcctta acccttgtta agagagtaaa ttatgaaacc attacaaaac
     2161 ggtacaaaca aaccttttac cattactatt gcttcaacta aaggtggctc tgccaagagt
     2221 acgaatgctg ctaacattgg tgcattctgt gcagaacacg gtctaagaac ccttcttatt
     2281 gataccgata cccaacccac attaagctct tattatgagt tggaatatca agctcccggt
     2341 ggaacttacg aatttctgca ttttaaagat gtagatccta cccacattat ttctagaacg
     2401 actatcccaa atcttgactt gatccagtct aatgacccgt caaataaaat cagcccaatg
     2461 ctgagagatt cacctgacgg tgcattacgt tttagtttac tgctccagaa aattgaaggt
     2521 tacgatgtca tcattattga cactcgtggt accagagata ttactgtcga tatgtctgta
     2581 ttggcagcag atgttttatt ctgtcctatt cttccccaca ttttatctgc taaggagttt
     2641 attcgtggca cgattggaat gtatcaagac ctcgaaacct ttacggcatt tggctttacc
     2701 ctaccaccgc tgaaagcgat gattaactgt gttgatcaca ctaaagatgt caaattggtt
     2761 tccgactacc ttcatactct cttccaaaat gagtttgatg aaaacaaaac attgctggaa
     2821 ttttcggtac ctgaccgcgt ggcatatcgt gaagcggcaa ctttttcaaa accggtctat
     2881 cgtcagagcc aagctgaata tgaaacgatc agtcagcttt gtgcgttact gatgccacag
     2941 tttgcaaact ctcacttctc agcatagagg gagaatgtat gtctagctta aataaatcac
     3001 ttgtacagcc gcattctata gaggctgaat tttcagtaat cggtggatta ctcttggata
     3061 atgaactctt tgatgaagtg agtagcaaaa tcaatgaggg ggatttttat aattttactc
     3121 accgtctact gtttaagcat atttccgaat tgattgaagc cggtaaacca gcagatatat
     3181 tgacattgga tcaatacctt acccagaaaa aagtgatcga ggatttgggc ggatttgctt
     3241 atcttgcaga aatagtcaaa aacactccat ctacagctaa tatccacgct tatacggata
     3301 tcgttctctt atatagtaaa cagcgacagc ttttaaaact ggggcagttt attgttgatc
     3361 agacacagag tgcgaaaacg ccagataagt ttgaagctgt tgttgatgac attgagaaaa
     3421 aaattactga gtttagccta tcagataata caaaatctgc agcagattta agtgatattt
     3481 ttgccaatat gctctctcgt atggaactct cggctaaaaa tggagatcct gtgacaggta
     3541 ctccaactgg tattcaaggt attgacgaag cgacaacagg tggacagcca ggcgatttaa
     3601 tcgtgattgg tgcccgccct tctatgggaa aaaccgcatt ttctcaaact atcgcttacc
     3661 atacacttaa aaaattcgag tcggctcctg tgttctatca cagcatggaa atgccggcag
     3721 atcagatttt acaacgtttt ctagctatgc gtgccagagt gggattgcaa aatattagac
     3781 aggcagacag tttggatgat gaggaatggt caaaactaac ctcagcaatg ggctatatcc
     3841 tagaacattg gaaaaatcgt ttagttattg atgatgaagg tagtctcacg cctcaaaaat
     3901 tacgcactaa agttcgacaa aatgctcgta aatatggcaa accggcagct attttcattg
     3961 attacattca gttaatgcaa acctcgcaac gttatgaaaa tcgcaattta gaaattgcca
     4021 acatctctcg ttcactcaaa ttactggcaa aagagatgga ttgtccggtt tatgccctct
     4081 ctcagctgaa ccggtctgtg gaacaacgtg ccaataaacg cccgatcaac tctgatttac
     4141 gggaatccgg ctcacttgag caagatgccg atgtcatttt attcatctac cgagatgaag
     4201 tttatgatgc ggattctccg tttaaaggca ctgctgaaat cattatcggc aagcaaagaa
     4261 acggaccact tacttccgta atgacgaatt tcagaagtga atttgcccta tttgaaaaca
     4321 gaacaaacac aacgcattag gatagattat gacaaaagat gaaaaaagac tggcagcgat
     4381 agcaaaagga ttaaatgttt cacctatttc aaatacggct ccatcctacc aaacagccac
     4441 accaacgcat tacagtagcg atgttgaata tattacagta acgctggata agttgcgtcc
     4501 gtatgagcat aaccctcgga aaacccgtaa ccctaacttt gagatgatca aagagtctat
     4561 tcgtcgtcga gggttagatc ataagccgaa tatcacccgt cgtccgggag aagatttcta
     4621 tattatcgct gacggtggta atactcgtat tcaggcactc aaggagctct ttaccgagac
     4681 caaagatcca aaattttggt ccatcagttg tcaatataaa ccttggcaag gtgatactgc
     4741 cgacagtgtc gaagctgaac tcaatttact tatcgggcat ttgattgaaa atgatacccg
     4801 tgcggatttg tcatttattg aaaaagcatt ggggattttg caggcgaagg agtattacga
     4861 gaaaaaatta ggtaagtctc tttcttcgag agagttatct tctgagttag aaaatgatgg
     4921 atatattatc tctcatgctc tcattcttaa aatggaacgt tgtgttaatt acttatatcc
     4981 acatatacca gaagttcttt ttagtggtct tggtcataca cagatcgata aactattagc
     5041 tattcgtaat aatgctgaag aggtatgggc agcccatcaa tttgatactg atgttacttt
     5101 tgaatcgctc tggtcagaaa atttatccaa atttaatgag gctacaccat ttcaagcaaa
     5161 agaattccaa agtgaattga ttacggcaat ggttgaagct ttagagggta aagtgagttt
     5221 tgaaacactt tatctggata ttgacttaga tgaacaaaaa ttcaaaaaaa tagcggctaa
     5281 acaacaagaa attgataatt tagttgaaaa aacagtcgat caaatcaata ccagacagga
     5341 acaacaaact gcaaaatctg aacctctcat caaaaatgaa aataaagccg ttactcccca
     5401 aaaagctcaa catattattg atgaggtaat tgatgataac gaaagtgatg atgagcagaa
     5461 taacgctatt actgatttat ctcagcttgg ctcttcattg ctcgataacc aagataatca
     5521 agaagattat ctatcccaaa ttgcccataa ctttggactc actccgggaa tgagtattca
     5581 agaacagcga gagcaacgag ctgaagcgaa tggactgact tttgcttgtg aaggtcgcca
     5641 accggttgaa gatatttggt tgattcaccc cgcacgtcaa tatcgctcag aggcctactc
     5701 actggcctta gatattgccg aaagtatggg cattgaccat ctggttgaac atattgtgaa
     5761 acaaccagtg gattacactt atgcaatgaa accggcagat actgaacttt caccgtctgc
     5821 tttaacactc tactcattcc tctcaatgtt acagactgct gaacataaag atgaaaatag
     5881 ctgtgtctta gattccaaat tcctgtttga gcttgatgat cttaccttag tcaaaatttt
     5941 ccgtctcatt cgggtcagtc gccatattcg ccaacaagga ggagaaaatg attaagccga
     6001 ttaccgtaaa tgaagcattg attggtaacg ccctgctcaa tattaaagag ggaaatatcc
     6061 atccttgtct aaaaatggga ttttctgagg agcaactaaa agcgatcaat aatctcagta
     6121 ttgatgaaat tatggatatt agcaactccg ttgtctcttt tgctaaggtg gagattaatc
     6181 acgaaacctt ttggaaatta ctggctattg cacaagccaa tactcaacag cgacaaatta
     6241 ttgaccgagc attattgctc ggagcctcta ttgaaatgtt gcaccagtat tttggtttat
     6301 caacctctga agtctcggct cgccgtcaat tactcggtat cgaagaaaaa atgggacgaa
     6361 aagcggcagc aagtgatgaa gaatctaccc atatttggga aatttggcaa agatacaaac
     6421 aacgaatgga aatcctagat tcacaagaag gattagagct tctatgtctg attgctgagg
     6481 aaggcaatat gaatctaacg gttgtttgga aactggtttc cgaatggtat tcaaaacata
     6541 agtaaaaaat aaatgccccg aagttggagc tttggggcat tcgatattga gtcttgtatc
     6601 tctatcttat gaattacaag gactttgcag aagtcccgtg cattatagcc ataggagaga
     6661 gaatagcaag agaaaaactc ttttatcctg gtggagagaa acaatgttta gcagcacgaa
     6721 taagccaaca gagcatggat tgctattttt tggcaaccaa cacgaaacag tccctactcg
     6781 attattacaa gatccctgcc ttacaccaag agcaaagttt gcttggcagc tcattaagtg
     6841 caatgttcaa gcctttcaag gaggattatt tccctcttat gagacgctca gcaaaatgtt
     6901 atccgataga ccttatgcgg aggctaaatt atcggaaaaa gtcgtgactc aaacactcta
     6961 tttactccgt cttactcgct ggcttacttt atgtgaaaca gtgcgtgatg agcgaggtta
     7021 tgtacaaggt aatgtttata tcctacatga tgaacctgtg ccaattttag atgcaattca
     7081 attaaatagc gactatctct cttttttaga taaatgcacc aaacataaag atagccttat
     7141 taatggtgtg gcaaatcata ttgttgaaag tctaataaca gacaaaacca aatggcacta
     7201 tgtctctcat ttagactgtt tacaaagtcg ttatcagata taccagcaac agcagctggt
     7261 gaaagataaa cagccatcgc aaacagaaca agaattaagc aaaattcaac aaaacatcct
     7321 aacttccact atggaagtta gggattttga tgaggaagtc aggaaaaaat cctctaaaaa
     7381 ccagacttcc aataagggag ttagggctaa aaatgaagat aagtcattga ttttagactt
     7441 acttccatta gggaagtcag atgtacagta ccgtacttta tatattaata agtactgtac
     7501 tggggaaccg agcgaaatta cttggccaca agaaatccca ttaacttcac ttgaacaaaa
     7561 acttactgca caggcaatga agggattaga cctcggttta tgccaagcta ttttgttgga
     7621 agtacaacaa cgcattattc aaaagcagga tgtgaaaaaa ccgaaaggtt atctctatac
     7681 gcttatccag cgggcgaagc agggtgaatt taaaccctac tattttgaat taggaaaaaa
     7741 tcttccctca cagaatcagg ctaacaataa ttctgctcat tctatacaaa aactgactga
     7801 gcagcctact gagaaaccgg tcttaacttc agcagacaga gagcaaatgg ctagtcgtat
     7861 gcagaagttt agagctgaat tacttttaca ataagattaa aaaacaatca ctgttaaggg
     7921 gcttaatagt gagtgaaaaa taatcagtgt gtaccaggta cacaatggat aaaaaataaa
     7981 cagcgtaggc agtgtctgca aagattaaaa aacagacaat ggaaagcccc tttccaaaga
     8041 ctaaaaaata atcaaataaa caaggagcat atatgaccac tcaattagat cctcaacttg
     8101 gtccacttcg tagtgagatc acttttacgt tacataccca atatgcccat aaattatggg
     8161 tggggcgacc aatgattcgt aatgaggaag gcaaagtaac tcaatcctcc attatcagcg
     8221 taccaaattg ctttgcaatg ctaacccaaa ttcaacgggc tgcatcagaa gatgatcctt
     8281 atgctgacga ttatctgatt caatttgaag aaagtgtgat caattatcgg aaggaaatcc
     8341 aaaagctcac caacgacatt gtcacgctct acgccaaaat gttgccggag ggaatttcta
     8401 ttgaacgctg tgccaatatt tccccgattt cttacccgat ttatgttaat tcacagctag
     8461 ggtatcaatt actctactta cttggtgatt ttgatagcct ttgccgttca gtaatgacgg
     8521 cagctcatat tgcgattatc aatcgtgcag aagctcaaga ttggattgaa gctggtgcaa
     8581 ggttaatccg gaaatgtttt gggatcgttg agcgttataa gagttcagga atcactcgtc
     8641 gggactatca agaaaagaat gctcgctatc aagctgcgat aaaacgaatg ggctatacac
     8701 tctcagatgc tgtacttacc ggtgagcatc gtgctgagtt tgctcccttc atcaagcaaa
     8761 acactactgt tgaagaagag caatccgtag aaacccatat cacggcacag acaaatgaat
     8821 ctcaaaaata aggagtgata tgaacctcat ctctgatgaa atttatcggc aattagtcaa
     8881 agattctggg ctgaatactt ctctgaaaca gctatttagc cattttgaca ctggctcaga
     8941 ctatgaactt ttgcaagaac agttcactca agctcgggct tattttatgg ctgcacagga
     9001 tagtatggtg cagtctgtgc ggcaggatct ttcacctttg gctgtttata tgattaagga
     9061 taaggcctca tcctcaggcg gtacattttt acgctggcgt agtatgcaaa atgccagaac
     9121 cggtggcaca gtttggcagc cgattgtaga tgataagtct gtcccagtgg aggtgaggaa
     9181 aaaagttgtc gcagtagaaa aagacaggat tttgattaat atgcagattt cggtgtttaa
     9241 tcatattttg cgacagttgg cagattgtgc tgaaaagttg aaagaggtag ataatgccgt
     9301 tgcgaaatca gacttaaatt cgtagtaaat ttatatataa caactcctat attggttgtg
     9361 tgtaaacgcc aaccacggtg ggctgacgtg gtaaaacaaa cagtccgtta attaggacat
     9421 attcaagttt gtaatacctg aaaatccggt ttgtaatccc tgaaaaagtg cagtttgtaa
     9481 atcctgcatt aaaaggcctt ttaaaggtaa gggtacaagc cccttacctt cacgaagaaa
     9541 aagcctttac aacggaggaa taagtgattg cacacgtaaa aatgaaaaat tcactctaac
     9601 caaattttaa ttaaatactt ttttcttagg ctgaatcaag tttaatagaa ctaacttaat
     9661 ttattgaagg agtaaatacg atggcaggaa tcaataaagt gattattgtc ggtaatcttg
     9721 gcaacgatcc tgaaatgcgg actatgccta atggtgaagc agttgctaat attagtgtgg
     9781 caacttctga aagttggacg gataaaaata ccggagaacg tcgagaagtc actgaatggc
     9841 atcgtatcgt tttttatcgc cgttatgctg aaatttgtgg tcagtaccta cgtaaaggct
     9901 ctaaaattta tatcgaagga aaattacgga cacgtaagtg gcaagaccaa aacgggcaag
     9961 agcgttatac aaccgaaatc caaggtgaac tattacaaat gttagatagc cgtaatgcta
    10021 caaatagcgt agatggacaa caatctaact atcaagctat gagccaatct ccaaaagcaa
    10081 cacatccaca agatttacca atggataact ttgatgatga tattccgttc tgagttacat
    10141 ataatttaaa actgtaaaat aaaacccata taaatataga gaacccttta ttttaaaagg
    10201 gttctctttt tttacattaa tttcgacaca acatctttaa tttgatagta tttatatatg
    10261 atattttggg tatccggatt tagcggttga tctgcgctag acgtaatttt gtaaataaac
    10321 cggattttag ggttgacgga aaaggccaga tgccctaata ttagattcaa gagctgagaa
    10381 caacggctcg ggcataagcc caacgggcgc accgccgaac ttggtgcagg atagaagcca
    10441 tgtcatacga tgcaaatgat gcgctgaatg aaatcgaaga ggcgcttagc gagcttgaaa
    10501 gggttgctga agacctaatc aacaacaacc cgaataaaga atcagaatta cgcggccaag
    10561 gggttcacca agcgacaaag cacctccgtt ttcgtattcg caacatccgc cgcggcgaag
    10621 caatttgact aacatgccgc cctaggggcg gctttcagcg aggtcagcat gaaaatcaaa
    10681 ctctattttc cggacgagtc tatcgccacg ataaagcgaa tggggcttcg ccaaatgtct
    10741 cccgagactc tcaggtggac tgccgatcat ccgtcaagca gctatggtat gggcgctttg
    10801 ctcagaggca agtctggtga aatccttgat gggaagtctt ttgctgcaat ggtgcatgcc
    10861 tttggcgcgt ggattgaaac agacagtgaa gataccagtc gtcgagttca taacgcgcta
    10921 gtcactgctg ccactggcac cgaggaatcg gttaaggtgg caaaggagta atgtcgaata
    10981 tcctcaactg gcctgattac aaagtgctcc aggtatccga actggagcac gattaccagg
    11041 tacacgccga agtttccgaa ccgcctacgc agtgccccca ctgcaatcat cctgaaatcg
    11101 tcggctttgg tcgccgtgat gaggtgatca tggatacacc cgtccacgga aggcgtaccg
    11161 gcatcatgct taaccgccgt cgctatcgct gccagtcttg ccgaaagacg tttctggagc
    11221 ctgtaccgca caaagacgaa aagcggcaga tgaccaaccg cctgatccag tacatcgagc
    11281 gcgagagcct gcgccgcacg ttctccagtg ttgccgagga tgtgggcgtc gatgaaaaga
    11341 ccgtccgtaa cattttcaac gactattgtg aacgcctcga aaagacgctc aattttgaaa
    11401 tgccgcagtg gttgggtatc gacgaaatcc acatcatcaa accccgctgc gtgatcacca
    11461 acattcagca gcagaccatt gtggacatgc tggataaccg caataaaacc accgtcaccc
    11521 gctacctgag caaacgcact gaccgcgacc tggtgcgcta cgtggcaatg gatatgtgga
    11581 ggccgtaccg gcaagcagta gaaaccatga ttcctgacgc cacggtgatc atcgacaagt
    11641 tccacgttgt caggatggcg aacgaatcac tggaacgcgc cagaaaagcc atcagaagcg
    11701 ccctgacgcc acagcagcgc cgtgggttga tgcgagatag gtttgtccta ctgaaacgcc
    11761 gtcacgagct gacagatgcc gaatacatgc gtttttcagg ctggacattg aattaccctg
    11821 agattggcca agcctacgaa ctgaaagaag cctttttcga gatttgggac tgtcagaccc
    11881 ggcaccaggc acaggaggca tattactctt ggctgcgaca gattacgccg gaaatgaaag
    11941 cccactatga cccgcttatc aaagcgatgg gcaactggca cgatgacatt ttcgcttact
    12001 tcgaccaccc cattaccaac gcctacaccg agtcactgaa caacctgatt cgtgttgtta
    12061 atcgtgttgg ccgtggctac agctttgaag cgctgcgagc caagatcctg tttactgagg
    12121 gcttccagaa gatcaagaag ccacgctatc agcgtcaacg gatacccgag ggcgctatgg
    12181 gcaggatgcc gttctatggc gttgccgaag cggggccatc cactaactac ggcgctgaca
    12241 tatcaacact ggtgcgggag attgaggcgg ggcgtttata gccctgtttc aaccctgtaa
    12301 tccggatacc caaataaagt cctatcaacg ttattaagag cggacaggac ttttatgatc
    12361 tttataattt ctagtattaa ggggttgaaa taacagcttt aggtgtggtt tttctttggt
    12421 gaaaataagc ggtaataagc aacatagcat aaagtattgc ccccatcagc cataacagac
    12481 catcccaata agcgacgcta taactataaa taaaggcaaa taaaagggga ccaatgatcc
    12541 cggtaatatt ggttaggctc accagagtac cttgtaattt cccttgcgca ttatcatcga
    12601 cagattttga taaataacct tgtaatgcgg gttgccccat acctcctgcc gctaagcaaa
    12661 ttaatgctgg taagatgacc caaacgtggc ctatccacgc taataataaa cagcccatca
    12721 tatcaataga catactgatc ataatggtgg ttttttcgcc ccatttttgt gccaatttcc
    12781 cagcgacaat cgcctgaaag aaaatatgta atacacccag aaccgccaaa gacataccga
    12841 tagaagttgt gttccaatca aaacgatatt gtgtaaacag cacccagatg gtggcaggaa
    12901 tttgcccgat aagctggata ataaaatagg ttgctaacca aaagtagagg cttttcttaa
    12961 aaaaaacagt gactgtattt gaggcagttt ggttttcagg tgtcctattg gcaacaagcg
    13021 cttctctttt ttgtgtttct cggaaaaaga gcaaagagag tattaataat atcgagtgtg
    13081 aaatagcggc aaaaataaat ggcatatgag cactgatatc acctaataat ccccctagca
    13141 ttgggccgat aataaggcca acaccaaaag caccacctaa gaaaccaaaa tagcgagttc
    13201 gatttttagc gggagtcaca tcactcatcg ctgatgcaca tacggcacct gttgcgcctg
    13261 tgatccccgc aatgatgcgc ccaatataga gcatccaaag tgtggttgag aatgccatta
    13321 aaagatagtc gagtgccgcg cctaaaaggg aaaacagcaa gatgggtttt ctgccgtatt
    13381 tatcagacag tcgtcctaga ataggagcaa aaataacctg catggtagca tagagcgcta
    13441 atagcacacc gtaatgggtt gccagtgaat tttcactgac aaattcattt aatagagtag
    13501 ggagtactgg catgataagc ccgataccaa tggcatctaa tacggtgatc agcagtataa
    13561 taataattga tttattcatt gagatcctaa aaatttatca gtgatagagt gggtgtaaaa
    13621 tatctctatc agtgatagat tgtcaaggct attttatttt gaggtaggta atggcaaagc
    13681 tagataaaga acaagttatt gataatgcgt tgattttact taatgaagtt ggtattgaag
    13741 gattaacaac gcgtaagctg gcgcaaaaaa taggtgtgga acaacccaca ttgtattggc
    13801 atgtaaaaaa taaacgcgct ttgttagatg cattagcaga aactattttg caaaagcacc
    13861 atcatcatgt tttgccattg ccgaatgaaa catggcagga ctttttgcga aataacgcga
    13921 aaagcttccg ccaagcctta ttaatgtatc gtgatggtgg caaaattcat gcgggaacac
    13981 gcccctctga aagtcaattt gagacatcag aacagcaact acagtttttg tgtgatgctg
    14041 ggtttagtct atctcaagcc gtgtatgcat taagctctat tgcgcatttt acattaggct
    14101 ccgtactgga aactcaagag catcaagaaa gccaaaaaga gcgtgaaaaa gtagagacgg
    14161 atactgttgc ctatccgcca ttattaaccc aagccgttgc aattatggat agtgataatg
    14221 gtgatgctgc atttttgttt gtccttgatg tgatgatctc tggacttgaa acagtattaa
    14281 agagcgctaa ataaatctaa attcgctgac gccctttttg gctaattagt tgcccttgta
    14341 tgtcagcgat accaatgtga gcaatacaac ctgcattaaa ttgtaaatag tcatcttcga
    14401 tgccatcaga gaaaattacg ccattctctg gcatcaaaga tcctaattgc agtggtgagt
    14461 caggctcaat agtgccaaaa gtcagtgcaa cacctgttgt tctacttgga aatggctctc
    14521 ttacactaaa ttgtagcttt cgatcactcc agctaaagcc ttgtaataga gggtgcgaag
    14581 cttctcctgt aattgccatc gcaccagcaa gaatagattg aaaccacccc gttgatccca
    14641 atcctgttga tacaataatg cctgatgaag attgcacttc ttcagcgcca ttccattgca
    14701 aaatatactg tgcggaagtg tggcttttag ggccaataaa taagtcatta accgctaata
    14761 aggattgacc atcattggtt gttgcttgtg caaaagtgac cgttttaaat ggcatttttt
    14821 tattaatggg tttaaaaacg gtttttgttt tgataatcaa cctttaattt ggagaattgt
    14881 tatgaacgac atcatcaaaa acccaaacgc ccactgcggt tgccaatctt gcacagggca
    14941 aaattgcaat ccaaaatgca actgccaaaa tggcgagctg tgcatttgtc aaaactgcac
    15001 ttgtggcgat tgtgattgca agtaattgat taactaaaaa cattgggcgg gcttaggttt
    15061 gcccaatgtt tgccaaatcc cattttgata aggaaaacta taatgaaaat gtttaaaaac
    15121 cgtgccgtgc attgggacta aaccgtgccg agatgatgta tcgggaaggg gcgtatgtga
    15181 ttgaccctgt gttccctgcg actttgggtt atgcaggggc aggcgtggtc gtggcagtgg
    15241 gcgatgacgc tggcgaattt caaatcggcg acaaagtgag cgtctgatct gcaccccaaa
    15301 agttggacta aaaaccaact gattaaggtg cagatttttt atgacgaaat ccctctattt
    15361 ttatagttag ataccactat tccactttaa acatccccat cataccgaga ttttcatgtt
    15421 ctaaaatatg gcaatggtac attttcaacc cagtatgtcc ttgcttaaag cgaataatca
    15481 ctttttcata agggcgtaaa ttaaccacat cttttaacgc tctgccttct ggcttaaagg
    15541 ttttaccgtt taacgtatgt tgaattactt caaattgagt gccgtgtaaa tggaatggat
    15601 gatccatatg gctttcattg aagatttccc actgttccac ttcattcaat ttggtaacaa
    15661 aatcaatacg gttcatatca aaggtttgac cgttgattaa gaacatacca ttcatcattg
    15721 gtggaatagg gttgtccgtt agtgttgtag tagcgtgatg tgtaccgtga ttcatcattg
    15781 gcatattcgt atggttcatc attttttcac taaagcgaat ttggcgaacc tgctttggct
    15841 catcccagtt aggcaaggac cttaagcttt caggtaactg aacaggttct gatttcacct
    15901 gaattgtggc taaagtgaga tctttaggct gttcttgaac catcatctta cggcgatcat
    15961 aataaccgct ttgtaaattg actgttcctt gcgtttcacc caccataatc acttcaacgc
    16021 gttcggctgg tgtaagtagc agttcatcaa caggcgagcg aggtttttca agtaaaccac
    16081 cttcggtacc caccacaatc catttcaccc ctggaatgtt taaacgaaaa taacgagcgc
    16141 tagtggcatt ccaaagacgg attcgttcat tcgttttcac ttgaatctgg ggctgatatt
    16201 gaccgttgat taacacaaat tcaccctcac gaccgtttat ccaatctaac atcgtgtttg
    16261 ctggaatggt gccatcggca tttaaacgca gatcggaaat cacccaatgt tgttcaggaa
    16321 ggtgtgcaag cggatcattt ttcgctttaa caacgaaagt gcctgctaag cctttataga
    16381 cttgttcgga aacatggtca tgtggatgag ggtggtacca atatgtccca gcactgcctt
    16441 gaggtagcgt aaagcgatag acttttttcc cttgcggttc aaccatatcc atcgggttac
    16501 catccgcctc atttggtaca tctaagccgt gccaatgtac tgttgagggt tgtggtaggt
    16561 gattgataaa ttcaatttct acggtatctc cttcaaatac ttcaatttgt ggccctggta
    16621 gttgtccgtt ataagcccaa aattccgttt ctttattgtc tgcgaggcga attttaattg
    16681 gctctgcttt taaagtggct ttgaacagtc cagcttgagt cgattgatta gcaagttttg
    16741 gtaatatccc attaagcgat aaacctgaag gcattgcctc agttggcatt aggccagtag
    16801 gtactgaatg catcatcgcc atattgccat gttgtgcgtg gttcatcata ttcgcgaggc
    16861 tataaagcga gctactggct aagctaattc caattccata acgtaaaaaa tctcgacgtt
    16921 tcattctttc ccccccctat tggttatagg atttaaacac ttcactttca ccgtttttct
    16981 taatcaaaac aacatcataa ggatctttgc gtccgccgta tgcttcaccg tccatacctg
    17041 gtgaaccaat tggcattccc ggtgcagaca agcctattgc atcgggtttt tctgcgagta
    17101 aacgtttgat atcctcagca ggtacatgtc cttcaatcac atagccatca atcacggctg
    17161 tgtggcaaga agcatgttca tatttaatgt taaagcgctt atgagcatca taattgcctg
    17221 tttcgttgac tttaacctca aaaccgtttt tctgcatata gctgatccat tcattacaac
    17281 agccacaagt cgggcttttc cacacttcca tagaaagtgt ttgtgcttga gcaaaagcgg
    17341 ttatgcctaa acttaaaagc aacaatgagc gggtgaattt atgtaatttc ataagatgtc
    17401 cttatttttt attgagattg aatggacatc attttaaagc ttaacctagg gttaaggtca
    17461 agtaatctga aaaaattcta tcatttgaaa atttttctca aaatcctact gcttgtagta
    17521 gagatatgcc aacgtaccat ccactattat tttttaaaat gtgatcagaa ttattattta
    17581 tgatgttctg aatgaccacc ttgagtattc ggcatattca tattagggtt catttcttga
    17641 tgcatcttca tcatttcttc aggcgttatt tcgcccgtca tcatttggtt gtgcatttct
    17701 gttatttgtt tagcatccat ttgcattgaa tgagtcattg ctggtgtagt gggttgatag
    17761 cctgctgaaa taggatctgc catgccaaag atcatagcaa agtgactcac aaataagaaa
    17821 atcacaagat aaaccgcatg taatttaatt tttgcactat ccacgagatt tttatgaata
    17881 acttttaatt ccatgagtaa aataataaaa ataggaaagg tagctaataa tagtgatgca
    17941 attgatgcga tatctaccca accacgccat tcagtaatag tcggtacgat aaaacgctta
    18001 caaaccgacc gtattgactt actctatcaa caccgtgttg atcccaatgt gccgattgaa
    18061 gaggtggctg gcgctattaa agatttaatg aaacaaggca aagttttgaa ttggggcttg
    18121 tcggaagcag gcgagaaaac cattcgcaag gcacacgcta ttcagccttt aaccgccgta
    18181 caaagcgaat actcgttgtt tttccgtggt cgtgaaaaag atgtcattct cgtttgtgaa
    18241 gaattaggga ttgggtttgt gccttggtcg ccgctggcaa tgggagcatt ggctggttat
    18301 gtggacgaga acagccgttt tgaggctgat ccaagcaaag atttgcgtgg tattatccca
    18361 cgctttacac ccgaagcgat gcaacaaaat gtgaagttaa tccagcttgt gcaaaaatgg
    18421 gcaaaacgca aactttgtac gcctgcacag ctttctttgg cctggctaat ggcacagaaa
    18481 gcgtttatcg cgccaattcc tgggacgagc aaagcccgtc atttgttgga taatttaggc
    18541 gcagacgatg tgaaatttac cgaagaagaa ttggcgcaat tccgccaaga attagaagcc
    18601 attgaaattg tcggcttgcg tttgcctgaa gcaattttga atttttcaga agcgaaatag
    18661 ttttcagata cctgaaaaag tcgtaaataa aaattctttc ttacagcggt cgttttcata
    18721 aaatcctttg aaaaacgatc gcactttttc ttgaatatgt agcaagatta gtggaagatt
    18781 tatcgaaatt gaaagatatt gggaaaaggg taaaactgga atcagacaga tgattaggca
    18841 aaacgctata gtcaataagt gtaaaaatgg cataatcaac tc
//
LOCUS       DANLXB010000028        18338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLXB010000028 DANLXB010000000
VERSION     DANLXB010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(1..109)
                     /locus_tag="PXD41_000642"
                     /pseudo
     CDS             complement(1..109)
                     /locus_tag="PXD41_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(464..4360)
                     /gene="purL"
                     /locus_tag="PXD41_000643"
                     /gene_synonym="purI"
     CDS             complement(464..4360)
                     /gene="purL"
                     /locus_tag="PXD41_000643"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL6288202.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4622..4801
                     /locus_tag="PXD41_000644"
     CDS             4622..4801
                     /locus_tag="PXD41_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288203.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            4794..5081
                     /locus_tag="PXD41_000645"
     CDS             4794..5081
                     /locus_tag="PXD41_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288204.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(5207..7309)
                     /locus_tag="PXD41_000646"
     CDS             complement(5207..7309)
                     /locus_tag="PXD41_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6288205.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
     gene            7592..8338
                     /locus_tag="PXD41_000647"
     CDS             7592..8338
                     /locus_tag="PXD41_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6288206.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            8534..10297
                     /gene="fucI"
                     /locus_tag="PXD41_000648"
     CDS             8534..10297
                     /gene="fucI"
                     /locus_tag="PXD41_000648"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL6288207.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            10491..11924
                     /gene="fucK"
                     /locus_tag="PXD41_000649"
     CDS             10491..11924
                     /gene="fucK"
                     /locus_tag="PXD41_000649"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL6288208.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            11999..12430
                     /gene="fucU"
                     /locus_tag="PXD41_000650"
     CDS             11999..12430
                     /gene="fucU"
                     /locus_tag="PXD41_000650"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL6288209.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            12490..13143
                     /locus_tag="PXD41_000651"
     CDS             12490..13143
                     /locus_tag="PXD41_000651"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL6288210.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            13205..14734
                     /locus_tag="PXD41_000652"
     CDS             13205..14734
                     /locus_tag="PXD41_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6288211.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            14731..15729
                     /locus_tag="PXD41_000653"
     CDS             14731..15729
                     /locus_tag="PXD41_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6288212.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            15753..16700
                     /locus_tag="PXD41_000654"
     CDS             15753..16700
                     /locus_tag="PXD41_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288213.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            16756..17007
                     /locus_tag="PXD41_000655"
     CDS             16756..17007
                     /locus_tag="PXD41_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL6288214.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            17136..18287
                     /gene="fucO"
                     /locus_tag="PXD41_000656"
     CDS             17136..18287
                     /gene="fucO"
                     /locus_tag="PXD41_000656"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL6288215.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
BASE COUNT         5253 a         3958 c         4039 g         5088 t
ORIGIN      
        1 tgcattcttt caaatagaat tcatgtactt taggaacgcc gttaaattta cgcaaatagc
       61 attttgcctg actctccaaa ttctcaattc cgttaatgtg attttgattg ctaactaaaa
      121 accactttct attaaggtag aattgaccgt tcaaataaat cacgttcatt ttctgtataa
      181 gacgtaatgg ggcatttaaa agggtgaaca gggtccaata agatttttca ataagtttcc
      241 ctatttacgt aagcataaat tgtggggcaa cccacttttg tggcaagagg ctactgcgta
      301 gacaccgtag atgtcaatgc agaaatgata agaaagtact tgaaatatca ggaaaagcac
      361 gaaggataaa caacttcgtt tatcagatat ataaaaattc gggttctatg aattcgaatt
      421 ttaatcgccc cctatggggg cagatcacta cgaaggtaga tttttaatac ttcaacgcca
      481 ctctcgcatt tctaaacaac cgcatccacg ctccaccttc cgtccaatct tctgggcacc
      541 aagagttact gaccgcacgg aacacacgtt cagggtgtgg catcataata gcgactcgtc
      601 cgtctgtatt accgatagcg gtgataccca acgccgatcc gttcgggttg gctgggtatt
      661 gttcggttgg gttgaggtgg ctatccacat attgtgcgat cacgagattt tgctgttgca
      721 agttcgctaa ttgctgtgga tttttgaact caacttgtcc ttcaccgtgt gaaaccgcaa
      781 tcggcatatg gctgcctgcc attccgttga accaaagtga gttggtgtcg ttgattttca
      841 ccattgcagc acgggcttca aaacgttcgg atttattacg cacgaagcgt ggccagtttt
      901 ctgtgcctgg aataatttcc gctagattgg agaccatttg gcaaccatta cataccccta
      961 atgccagcgt gttcgggttg gcgaagaatt tgctgaattg gtcacgcagc attgggttga
     1021 acagaatcga tttcgcccag ccgccgcctg cacctaagac atcgccgtaa gagaagcctc
     1081 cgcacgccac cattgcgttg aagtcgttga ggttgcgtct gcctgaaatc aagtctgaca
     1141 tatgcacgtc aatggcgttg aaaccggcac ggtcaaagac ggctgccatt tcgtagtggc
     1201 tgtttacacc ttgctcacgc aaaatcgcca cactcggttt tacgcctttg ttgatgtatg
     1261 gggcggcgat gtcttcgttc acatcgtaag ttaaaaatgc ggataagcct ttgttattcg
     1321 ggtctttttt cgctgcaaat tcttggtctg cacattcagg gttgtctcgc aaacgctgca
     1381 tttgatgagt gagttccgcc caaatgccac gcagttcgga acgtttttgg ctaaatactg
     1441 ttgtgccgtt gcgggtaatt tcaaagctgt cgctttcaac cgctgtacca atatcaaagg
     1501 tgagatttgc aagattttcg gcatttaaca ccgcttgcac ctcgctcaat tcttcggtgc
     1561 gaacttggat tactgccccc agttcttcgt tgaataacac ggctaaatcg tccaccaagc
     1621 ggtcgatttc caccgaaatt ccgcaattcc ctgcaaacgc catttccgcc agtgtggtga
     1681 ttaaaccacc gtccgagcgg tcgtggtagg caagcaattt tccttgtgcg acaagggttt
     1741 gcattgcgtt gaagaagcct tttaagcgag ccacattcac cacatcggca ggtttgtcgc
     1801 caagttgttt gtaaacttga gcaagtgcgg ttgcacccaa gcggttgttg ccttcgccca
     1861 ggtcgatcag caacaagcgg gtatcgcctt tgtcggtgcg aagttgtggg gtaacggttt
     1921 tacgcacatc ttccacacga gcgaaagcgg aaatcacgag cgaaagcgga gcagtaacag
     1981 atttctgttc gccgttttcc tcccaagtgg ttttcatcga cattgagtct ttgcctaccg
     2041 gaatggttat gcctaattca gggcaaagct cttcgcccac cgcttttact gcctcgtaaa
     2101 gccctgcgtc ttcgccctcg tgccctgccg ccgacatcca attcgccgag agtttaatgc
     2161 gtttgatgtc gccaatgtta gtggcggcaa tattggtgat gctttctgcc acggcgaggc
     2221 gagctgaggc agcaaagtca agcaaagcaa caggtgatcg ctcgccaatt gacattgctt
     2281 caccgtgata gctgtctaat gaagcggtgg ttacggcaca atctgccaca ggaatttgcc
     2341 acgggccgac catctgatct tgtgccacca ttcccgttac tgagcgatcg ccgatggtaa
     2401 tcaggaaggt tttttcagcc accgcaggca agcgtagcac acggtggaac gcctctttca
     2461 agtcgatgtc agcggttgca agcggtggat ttttcacagt ttttgacaaa acatctcgct
     2521 gcatttttgg cgttttgccg agcaacacat tcatcggcaa atcaatcggt ttattgtcaa
     2581 aatgagggtc agcaagggtt aaatgcttct ctttcgttgc ctcgccaatc accgcaaatg
     2641 gggctctttc cctttcgcac aatgctgtga aaatgtcgag tttttcaggg gaaacggcaa
     2701 gcacataacg ctcttgcgat tcgttacacc aaatttcaag tggcgacatt cctttttcat
     2761 cgcacaagat gttacgcaaa tcaaacttac cgccacattc gccgtcgtga accaattcag
     2821 gcatcgcatt tgataaaccg ccagccccca cgtcgtgaat aaataaaatt gggttctccg
     2881 cccccatctg ccagcaacgg tcgatcacct cttggcaacg gcgttccatt tcagggtttt
     2941 cccgctgaac cgaggcaaaa tccaaatctt ctttcgattt ccccgatgcc attgacgatg
     3001 ccgccccacc gcctaagccg atgttcattg ccgggccacc aagcacgatc aacttcgctc
     3061 ccaccgggat ttcgcctttt tgaacgtgtt cggcacgaat gttgccgata ccgcctgcta
     3121 acataatcgg cttgtgatag ccacgaattt cttcgcctgc gaagctgttc actttttctt
     3181 cgtaagtacg gaagtagccc aataacgcag gacgaccaaa ttcattgtta aatgccgctc
     3241 cgcctagtgg gccatcaatc ataatatcca gtgcggaggc aatgcgattc ggcttggaaa
     3301 gcgggttttc ccacggctgt tcaaattttg ggatcactaa gttagagacc gaaaaacccg
     3361 tcaagcccgc tttcggtttc gccccacgcc ctgtcgcccc ttcatcacga atttcaccgc
     3421 ccgaaccggt cgccgctccc gggaatggcg agatggcggt tgggtggttg tgagtttcta
     3481 ctttcattaa aatatgagca tcttcttgat gatagcgata ttgtccatct tggtcgggga
     3541 agaaacgccc aaccgttgag ccctccatca ccgccgcatt gtctttgtag gcggaaagca
     3601 catagtccgg ggttttctca aaggtgtttt taatcatctt aaacagggat ttttcctgtt
     3661 ttaccccatc aatcgtccaa tccgcattaa aaattttgtg gcggcaatgc tccgagttgg
     3721 cttgggcgaa catatagagt tcaatatcat tggggttacg cccaagttgg gtaaagtttt
     3781 ccaccaagta atcaatttca tcgtccgcca acgctaaacc taagttgata ttcgcttctt
     3841 ccagtgcctt gcgaccaccg cctaaaatat ccaccgaagt aaacggcttc ggctcttgct
     3901 gagcgaaaag ctgttcggct tggctttcgt tatccagcac cgtttccatc atacggtcgt
     3961 gtaataagcc tttcaacgtc gtaagttgac tttcgttcgg cgtttcagaa aattctaaat
     4021 aatatgccgt gccacgctca attcgctcta ctgctgccaa accgcagtta tgggcgatgt
     4081 cggttgcctt agacgaccac gaggaaatcg tgccgatacg aggggtaaca atcaggcaaa
     4141 accctgtcgg ctcgtcttct tccagcgttg gaccgtagtg caataactct ttgattttgt
     4201 tttcttcatc ggctacaagc ggtcgattta atgccacaaa atgcaaaaac tccgcataaa
     4261 ctgattttac aggtaattga ttttgttgga atttttgcag aagttgttga atgcgaaaag
     4321 cagataaggc aggcgagcca cggaaggttt ggattgtcat tctttggatt ttcctattta
     4381 agatgaaaaa ctaaaccgat tataaacgat tgcgcaaacg attgctatat ttgtcagacg
     4441 tttgctgtta gatacattta ttcattagta tcaaataaat ttgttcaata ctaatgaata
     4501 cctttcaaag aaggtcccct ctatcaatct gttttaaaag ataatttaaa aataagttaa
     4561 tttgacaact caaaattaaa agcagacaat gcttttaatt atatcttaat aggagcagat
     4621 tatgtttaaa gagaaaggct atgatgaatt cctagcagaa aaaattcgcc ttggcttaga
     4681 agatatgcaa tcaggtaatg gtctttcact cgatgaatca aaagcacgaa ccaaacaact
     4741 gattgaacgt aaagcaagag aactcgcaaa ctttgaacaa gagaatatca tttatggcta
     4801 aaacattacg aattagcagt agagctcaaa atgatattga agaaatttta gcgagcgtaa
     4861 ttgaatatac tggttttgaa agtagtggaa ttcgcttaca agaagatatt taccaaaaat
     4921 ttgagactat cgcttatatg ccctctgcgg ctggacgttt aagagaagat ggcacaagag
     4981 aagcattcac taggcgttat cgtattgttt ataccgaatt agaaaatgaa gtgtggatta
     5041 ttaccattat tcatagtagc agactttatc cacgcattta aataacaaac gactaaaata
     5101 gtcggttttt tatttgcaaa aaattaataa aatatcaccg cttgtaagct ccataaaaaa
     5161 aagcccgatt gtaacatcgg gcgttttagt ctgaatttaa gtcagattag aatgtgtagt
     5221 tcacacctgc acggaattca cgtccacgag ctgataattg accacgctga ccgtgtgcgt
     5281 tgtatttttt attcgccacg ttatccactg cgaagtttac attcacgcta tcatctttaa
     5341 gtggtttcca gtttaaggtg atatcagtta cattgtagcc gtctttgcct gtaccggtat
     5401 ttgtttgtaa tgttccgccc gtaacgaaga aattatcttc aggtttcact ttctcaacaa
     5461 tacggtggtg tacgccaacc tctaaatttg gttgttcaaa gcgatagctt aaagaagctg
     5521 tccaagtacg accgatagct gaggcgtatt ctgggttagt acttaataat ggtttttctt
     5581 cccgcttacc agtttgtctg tttacttccc aaatagttgg tgagtagaaa cgcggtttgc
     5641 tgtgtgcaac accaatacga gcagtaaaac caccattatg gtaacctgca tttaactcat
     5701 aaccacggtt tttaatttta cctaggttca taattaactc attattagga ttatggctat
     5761 cacgaccacc acctaatgca tcttttatat cttgccagaa atagctacca tcaaaactga
     5821 atgtaccatt gttatagttg aaaccgattt cagtattacg agctttctcc gctttagtat
     5881 tgctaccaat actaacgatt tttctatttc cgtgagccgt tagtgcatcg tataaacgag
     5941 ggctacgagt tgcatagttg tggcttgcac ttaagcttaa atgttcaatt ggctcataga
     6001 taagcccaac gcttgggctg aatgcaccat tactacgctc tttaccatcc attgctttga
     6061 atttgaagtg gtcgtaacgt acaccggtag ttaaagttac tttatctact ggagcagtaa
     6121 ttgcttcaac atacacgccg gtatcggttt tctcttggtt tttcacaaga gggttaaatt
     6181 tagtgtgtgg tttagcttct tggtggcgat agttcacacc gtattttaat aatacatttt
     6241 cgtgaagggc agaatcaaag tttacgtttg caccgtgggt tactatttta gttttggttg
     6301 cataatctac accaccagca taaccattac ctgtttcatt ctcagaccaa cgaccttgta
     6361 ctaactgata cacgttagct gttgcttctt gagcaaaacc taagttttta ccagtccatt
     6421 ctaagttagt tctttgaacc gtaattctac ggttagctgg agcttggcgt tctacagtta
     6481 agcggttgta cggagaaacc tttgtgccgt taggtgctac atcaaattct tcacgcacta
     6541 aacgctgacc ttcatttcgc tcacttgaat ggcttaatac aaaacggtga tctcccaatg
     6601 ttgcacctaa tttagctaaa aagctggttt tatctagtgc actatacgga acacggtttg
     6661 tgccgaattg gtttacgtaa tctttaccgc ctttatagtc gcgatctctc acaagattac
     6721 ctgagactaa agcatcaaag atttcgcctt taccatataa ggttgcattg aaattgtgag
     6781 cgtggtttgt gctgaagcca gtacctaatt ttgcaccgaa gtttttatcg ctgtttttta
     6841 ataaatctaa tgcatcaacg gttttagcaa ttactgcacc attagtttga ccaataccgg
     6901 ctgaagcact gcctgcacct ttttgtacag aaacaatttt caccaatgcc ggatctaaca
     6961 tatgacgacc ttggtgatac aaaatttggc tatctgagta agtgttatct acttttacat
     7021 caattgagtt ttgacccata ccacgaatat agagatattg tgatgtaccg ttaccaccac
     7081 ctaagctaat tgccggctca tcttttaata aaccacgcaa atcggtttgg gtgctttcat
     7141 cttttttctt agttgttacc acattgcttt gtacttttaa accttgatta tctgttacgg
     7201 taacagtatc taatactact gcatctgttg aagcagtttg agccactgca ttagcagcaa
     7261 gtacgctcaa taccgcagca gaaacaggga gcaatttgaa gcttttcatt ttatttatat
     7321 tccttaggta aattatttaa gaggattatc tgtttgatat taaaaataat tctcaacacc
     7381 aaacgttcgc aaattttaca gagataaaaa tgattgtcaa ttagtctgaa atgaaatttc
     7441 acaaaatata ttacaaattt tacaaaaagt tccctaaatt taaccgcttg caacacaaaa
     7501 tgtgatcgcc ttctaaaaat caaatttgct tgctcgacag taacgctaca agcggttaaa
     7561 tttggagaaa aatttacaaa aaggatagat tatgcagctg cgacacaaac agataatgga
     7621 atatatacaa cagtttgatg aagctaacgt tcaagaattg gcggaacatt gtggggtttc
     7681 gattgaaact atccgccgag atttaaataa gctagataaa gatggattat tacatcgcac
     7741 tcacggtgga gctgtgagcc ataaaaagcg agatattggt cgctcattta ccacccgaca
     7801 acggctgaac agtgaggcga aacgcagtat cgcagaaaat gtgttggaat atttacaacc
     7861 agaatcggtg attgctttag atgccagctc aacctcttgg aatgtggcac agcgtattcc
     7921 aaatattcct tgcaccgttg tcagcagttc aatgcggatt atctacagcc tttcacacaa
     7981 accgcacatt aaaacgattg ccaccggtgg tatttattcc gaaaaatacg atgccttcta
     8041 tggtccatta tccgagcagt tactgacccg tttaaaaatt gatcttgcca ttctttcttg
     8101 tacaggcatt gccgatgggg cgatttggga atcaaatgaa attaatattt cccttaaacg
     8161 taaattaatt gcgaacagta aacaggtttt tttattagcc gatcacagta aatttgagcg
     8221 taaagacttg tttcgtatcg aagatttatc ttgcattgat aaattattta tcaaccaacc
     8281 cccaccggac tttctcaaaa attattgctt agcacatcaa attgaaatca ttatttagtg
     8341 atttctgccc gattttattc agaaataaaa caaatcgggc attctttttt cactcatttt
     8401 taccaaaatc ccccattttt tgtgatcgca ctcacaaaat ttaaactaaa ttcgcatttt
     8461 tcttcataac tcatattgcg tatgcataat aaattcaatc gcaaattttt ttaaccaatc
     8521 gggagaacta tttatgacaa cgttgaaatc tacccctgta aaaattggta tccgcccaac
     8581 cattgacggt cgccgtttag gagtgcgtga atcacttgaa gatcaaacaa tgaatatggc
     8641 aaaagccgtt gcacaattaa ttcaatctga agtccgccac ccaaatggtg atttcgttga
     8701 atgtgtgatt gctgattcca ccatcggtgg tgttgccgaa gctgcggctt gtgcagaaaa
     8761 attcaaacgt gaaaatgtcg gagcggtgat taccgtaacc ccttgctggt gctacggttc
     8821 tgaaaccatt gatatggacc cacatatgcc gaaagccatt tggggcttta acggaacaga
     8881 acgcccaggt gcagtttatt tagctgctgc tttagcaggt catagccaat taggtttacc
     8941 ggcattctcc atttatggca cagaagtaca agaagctgac gatcaatcta ttccagacga
     9001 tgtgcgtgaa aaattactcc actttgcccg tgccggctta gcagtggcaa ccttacgagg
     9061 aaaatcatat ttatctatcg gctctgtttc aatgggtatt gccggttcta tcgtaaacca
     9121 acaattcttc caagaatatt tgggtatgcg taacgaatat gtggatatga ccgaaattaa
     9181 acgccgttta gatcgccata tttacgatgc cgaagaattt aaattagcaa tgagctgggt
     9241 gaaaacctat tgcaaagaag gtattgatgt caacgcaccg gaaaatcaac gcagcccgga
     9301 agagcgtgaa aaactctggg aagacgtggt gaaaatgacc attattgccc gtgatttaat
     9361 ggtgggtaat cctcgcttag cagagctagg ctatagtgaa gaagccttag ggcataatgc
     9421 gattgctgcc ggtttccaag ggcaacgcca atggacagac catttgccaa acggcgattt
     9481 tatggaagct accttgaatt cgacctatga ctggaacggc gttcgcgcac catacattat
     9541 ggcaactgaa aacgacagct taaatggcgt gaatatgttg ttcggtaact tattaaccgg
     9601 tcaggcacaa atctttgccg atgtgcggac atactggagc gaagactcgg tagaacgtgt
     9661 caccggctgg cgtccggaaa gcggttttat ccacttaatc aactccggct ctgcggcgtt
     9721 agacggaaca ggtcagcata ccgatagagc aggcaaacca actattaaac cggcttggga
     9781 agtgactgaa gaagacggta aacgttgttt agaaaacacc tgttggtgtc cggcagttca
     9841 cgaatatttc cgtggtggtt tatcttccca attcttaacc aaaggtggaa tgccgtttac
     9901 gatgcaccgt atcaacctga tcaaaggtat cgggccggtt ttacaaattg ccgaaggttg
     9961 gtctatcgac ttgccggaaa atgtacacga cattttaaac aaacgcgcca atgaaacctg
    10021 gccgaccact tggttcgtac ctcgcttaac cggaaaaggc gcatttaccg atgtgtatag
    10081 cgtaatggcg aactggggtg caaaccactg tgtggcaacc ttcggacacg ttggggcaga
    10141 cttaattacc ctcgcctcaa tgctccgcat tccggtttgt gtgcacaatg tggaagataa
    10201 agacgtattc cgcccaagtg cgtggaacgg tttcggtcaa gacaaagaag gtcaagacta
    10261 ccgtgcttgt gctaacttcg gaccattata taaataatac acaatcaccc tctccccttg
    10321 tgggagaggg acagccaagc aattcgttca gaattgaatg gcagggagag ggctacaagc
    10381 ggtcgctttt ctctcaaaat ttacaaatcc ctctctctga ttaaattgct aaacgcaatt
    10441 taatctatct ctctaaaagg gagatattag gataagtaaa ggagataaca atgccaattt
    10501 ctcttatttt cgactgtggt gccaccaacc tccgtacgat tgcgattaat caagcgggtg
    10561 aaattgtggc agcccatcat ctaccgaata acacacaacc agatgtggaa agcccagaat
    10621 ttcatatttg ggatattgaa gagatctggt cgaaattaat gacctgtgcc aaacagacgc
    10681 tttctcaact ttcagaacaa caacggcaag agattgttgg gatttcagta accacctttg
    10741 gcgtggacgg tgcattattt gacaaaaacg gcaagcagct ttatccgatc atttcttgga
    10801 aatgcccgag aaccctaccg attatggaaa accttgccaa ttatcttgat gttgaggcgt
    10861 tatatcaacg taatggcgtt ggacattata gtttcaacac cttattcaaa ttattgtggt
    10921 taaaagagaa caaaccagaa atttatcaac aagctgagag tttcttattc atctcatcta
    10981 ttttgactta ccttcttaca ggcgtgcaaa caaccgaccg cacaatggcg ggaacgtcaa
    11041 tgatgacaaa catcgaaaac gattcgtggg ataaaacagt tttagattta ttaggcttaa
    11101 ccgaaaacca ttttcctcca atgaaaagtg caggagaagt tgtgggaaca ttaaaaggag
    11161 aaatttccca agagttaggt ttaagcggtc aaattccagt aatttcttgc ggacacgata
    11221 ctcaatttgc catttttggc tcaggagctg gctataacca acctgtgtta agttcaggca
    11281 cttgggaaat tttaatggtt cgtaccccaa aagcaaaacc acaatggcaa ttcgttcaaa
    11341 acggcttaac cattgagttt gatagccaat ctggttattt caacccaggt gtgcagtggg
    11401 tagcttcagg tgtgatggag tggtttggca aacgtttctt ctctgatata gccaatactg
    11461 aacattacta ccgcacaatg attgaagaag cggcagaagt gcctgctggc tcaaacggtg
    11521 tgaaattagt cggcaatttt gatggcacaa cagctaaaac aggttcaatt atcggcttat
    11581 ctatgcacat cactcgtggc gaaatttacc gtgcaggctt ggaatatatg gctcatcgtc
    11641 taaaagaagg gttagatgta ttacaagaag tcggtcattt taatgctgag agtttgattt
    11701 gtgtgggagg tggttctaaa aacgctttat ggaatcaaat tcgagccgat gtcttaaata
    11761 gaccgattga tgtagtggat ttccctgaaa gtaccgtatt aggcgcggca atgtttactt
    11821 ttacaggtgc tggtgtattt gaaaatccaa atgcggctca acaggcaatg aagccaaatg
    11881 tgaaacgggt tgagccatcg tcaaatagtc aattttataa ataaagtttc tcccctctct
    11941 ctgatttgag gttcattcag aacatcaaat cagagagagg gtaaaaaagg agttcaaaat
    12001 gttaaaaggt attcacccgg caatttctcc agatttatta aaagtcttag ccgaaatggg
    12061 gcacggcgat gaattagtgc tttctgatgc acacttccct gctcactcta ttcatcaaaa
    12121 cgtcattcgt gcagatggct taagtgttgc caccttatta gaaggcattt ctgctctgtt
    12181 tgaatttgac caatacgttg aagccccact tgcaatgatg caagcagtaa aaggcgacac
    12241 gctcgatcca agcgttgaag agcgttacct caatgcaatt aaaaaagtaa acggaacagc
    12301 cccgaaaata gagcgtgtag aacgcttcgc tttctatgat agagccaaaa acgcttatgc
    12361 cgttgtcatt acaggcgagt tagccaaata cggcaacatt attatcaaaa aaggcgtaac
    12421 accggtttaa ttacaagcgg ttaaaaaagc agaatttttt acaaatataa aattaaaagg
    12481 agttcaacaa tggacagaaa aatactggcg agacaaatca ttgatacttg tcttgaaatg
    12541 acccgaattg ggttaaatca aggtacagca ggcaatgtga gcgtacgtta taaagacggt
    12601 atgctcatta cgccaacagg tacaccttat gagcaaatga ccgaagattc tatcgtcttt
    12661 gttgatggca acggcaaaca cgaagaggga aaactccctt caagtgagtg gcagttccat
    12721 ttagcggttt atgaggctcg ccctgaatta aatgcggtag ttcacaacca cgctaaaaac
    12781 tgtgccgcag tgtctatttt aggtgaacct atccctgcca ttcactatat gatcgcctgc
    12841 accggcacta atcacattcc ttgtgtacct tatgccccgt tcggcactca ccaattagcc
    12901 gactatgtac gtgaaggcat taaacacagc aaagcaattt tactcgctca ccacggctta
    12961 atcaccgcag ataaaaccct cgaaaaagcc ctcggcatcg cccacgaggt ggaagtgatc
    13021 gcagaatggt atttgaaact gctcgctaca ggaaaaccta tcccaacgct aaacaaagaa
    13081 caaatggata tcgtactcgg aaaatttaag tcctatggtt cttgggtgga aagcgaacaa
    13141 tagcctgcca taaataacat acaagcggtg atatttctta aaatttttac aaacggagtg
    13201 cagtatgcaa aatgaagtaa tactcacgat gaaaaacatc agtaaatcct ttgcgggggt
    13261 caatgcgtta aaaggtgttg agcttacgct gcgtaagggc gaagttcacg cattaatggg
    13321 cgaaaacggt gcaggtaaat ccaccttgat gaaatgcttg ctgggcgtat atcaagccga
    13381 tgaaggtgaa atcatatata aaggtcagcc tgttcgcttt gagtcggtat tagaggcaca
    13441 aaaagcgggc attagtatga ttttccaaga actgaacctc attccccatt taacggtggc
    13501 agagaatatt ttcttcgccc gtgagccact caaacacggt ttagtggata aagacaaaat
    13561 ggtggaagaa tcggctaaat tgctgaattt ctttgagatt gatgttgatc caaacgatga
    13621 agtgagaatg ttgtcggtag ccaaacaaca gatggtagaa attgccaaag ccctttcatt
    13681 tgatgtggaa gtactgatta tggacgagcc gacctccgct cttaccgaaa aagagatcga
    13741 taaattattt gaattggtcg atagactgcg tgccaaaggg gtgagcattg tctatatttc
    13801 tcaccgaatg gaagaattaa aacgtatctg taaccatatt acgattttcc gtgatggcac
    13861 ctatgtatct aaccataaat tcaatgaaat cacgatggat gagatcatta ccaaaatggt
    13921 tgggcgttca ttggataacc atttcccacc aaaaaccgct gtggtgacaa acgacattat
    13981 cctctcgatt atgaatgctg aacgtaaggg agtgtttgaa ccattgaact ttgacttacg
    14041 caaaggagaa attctgggca ttaccggctt ggttggagca aaacgtactg aactggctcg
    14101 agccatcttc ggagcagacc cacttgatag cggtgagatt tttgtgcacg agaacaaagt
    14161 cagcattaaa gatccgagtg atgcaattaa agccggtata gcctatttgt cggaagaccg
    14221 taagctcaat ggtgttgcag taagaatgtc gattcgtgag aatatcacga tggcatctat
    14281 ggataaagtt gccaatcaaa taggtgtgat ttcttacgat gaagaagaaa aagcctcaaa
    14341 aactttcatc gacaaaatgg aaatcaaaac cccaacgatt gagcagaaag ttcaaaactt
    14401 aagtggtggt aaccaacaaa aagtggtaat tggtaaatgg ttattccgtg aagcaaaagt
    14461 gatgattttt gatgagccga ctcggggaat tgatgtcgga gcaaaatatg ctatctatca
    14521 actgctcgat gagcttgctg ccaatggcgt gggtgttatc gtgatctctt ccgaattgcc
    14581 tgaagtcttg ggagtttccg accgcatcat tgtaatgcgt gaaggtagaa tgacaggtat
    14641 gctcgagact aaaaaaacca accaagaaga aattatgcat tatgcaactg gtgttaaaaa
    14701 tatgtttgct cgtgaatatg gggtggaaaa atgaatgaaa aacaaaaaga aatgttaaga
    14761 aaaatggctg cattggctgg cttagtacta ttaatcatct ttttcagcgt aaccaatgaa
    14821 tacttcttta cctccaataa cattatgaca gtagggctac aaacctctac cattgcgtta
    14881 attggtattg gggcaacctg tgtgatctta accggtggaa ttgatttaag taccggttca
    14941 gtagttgcac tctccggtgt ggcagctgca atgattgtaa atgccggtgt acccgtacca
    15001 ctaggaatga ttttagggat tttggtcggc ggtatttgtg gcttaatcaa cggcatttta
    15061 gtcaccagaa tgaaattgcc tccgtttatt gctaccctcg gtatgatgat ggttgcccgt
    15121 ggtttagcat tgtatgttac caatgccgca ccagtttccg gaatgcctga atcctttgcc
    15181 aatctcggta acggagcatt atttaaaatt gtggaagaag gggcaaacgg cttgccgaaa
    15241 gtggtatttg caggtattcc ttaccctgtg attattatga tctttattac cgtactattc
    15301 actttcgctc tctctaaact gaaagtcgga cgctatcttt acgcaattgg ttctaacgaa
    15361 gaagccgcac gcttatccgg cattaaaacc aatattgtca aaatctatgc ctatgttgcc
    15421 agtggcttac tctctggttt aactggcgtt atccttgcct cccgcctcgt caccgcccag
    15481 ccaaacggtg gggtctctta cgagctggat gcgattgcca gtgctgtggt gggcggcaca
    15541 tcgcttatgg gcggtgtggg tactatcccc ggcacactca tcgggtcatt cattatcggg
    15601 gtactccgta atggtttgaa tatgaatggc gtttcttcat ttgttcaaat gattgtcatc
    15661 gggcttgtga ttatcgtggc ggtctctctc gaccagctcc gccaatccaa aaaagccggt
    15721 aaaaaataat ccactcttaa aggagaatta aaatgaaaaa atcagcatta tttactgcga
    15781 ccctctttgg tttatcgacc ttatttgcag gcagtgcaat ggcaaaatct gatgaaatcg
    15841 ctgtgattgt gaaatctgcc aactctacct tctggcaaaa cgtgcgtaaa ggggctgaaa
    15901 ctgccggcaa agatattgga ggacaataca aagtcacctt ccaagggccg gaagccgaaa
    15961 cagcgattga cgcccaagtg aatatggtgg acaacgccgt aaaccgtggc gtggcaggca
    16021 tcgtactggc tgcctcagac ccggtagcat tagtgccggc ggtgaaaaaa gcttatgaga
    16081 gtggcattcc ggtggtgctt atcgattccg gcatcaacag tgacggcaaa tactaccaat
    16141 ctttccttgc caccgacaac cgtgcagcag gtaaattagc agcggaaaaa ctgcttgcca
    16201 aagtcaaagg cggcaaagtg gcagtgatga gctttaccca aggggcagca tcagcgattg
    16261 agcgtaccgg tggttttatt gacgaaatca aagcaaaagc cgattacaaa ctggtcggcc
    16321 cgtactactc cgattcggat atgaccaaag cgttaaacca aaccgaagac gtattaggtt
    16381 ctaaccctga tcttgcagcg atcttcgggg cgaacgaacc gactgcggta ggaatggcac
    16441 gagcggtgaa acaaaaaggc tttgccggca aaattgtagc ggtgggcttt gatggaaact
    16501 ccgacctaca aaacttcgtg cgtgacggaa cactagacgg catcgtggtg caatcttcct
    16561 accaaatggg ctataaaggc gtggacacca tcggcaagct gattaaaggc gagaaagtcg
    16621 aaaaagtgat tgataccggg gtggtttatg tcacgaaaga aaacattgat agcgaagaag
    16681 cgaaaggtgt tctttactaa cattcaagtt aaacggggtg gggttgccca ccctttcagc
    16741 cgaaaggaag ccaatatgtc aaataccctt accgataaag ccttagtggt gattgccgca
    16801 cttggcggtc gagaaaatat tgtcgatgtt tacgcctgta ttacccgcct acgtgtggag
    16861 gtgaaaaata ccgacattgt ggaatgggat aaaattaaat ctgtcggtgc gttaggcgtt
    16921 gtgacctcag gctcagttat tcaatctatt tttggtagcg atgccgaagc ctaccgtgat
    16981 gaaatcaaac gtattttgaa tatttagcct aagcacactc acaacaaaag aatcgcaaca
    17041 agcggtgaaa tttttatcaa aatttgcaaa aaaatgacgt aatttgaccg cttgcaagtt
    17101 aatcgaattg tttaactttt aagaaggaaa atagtatggc aaatcgtctt atcctcaatg
    17161 aaaccagtta ccacggcaaa ggagcaatcc aaaatattgt tcacgaagtg accagccgga
    17221 gtttcaaaaa agcccttgtg gtaacagaca aagacctgat caaatttaac gttgcccaaa
    17281 aagtcaccgc cttgcttgat gccgcaggct tgccttatga gattttcgat gaggtcaaag
    17341 ccaacccggc agtcgatgtg atcaaagcgg gggtcgcaaa attcaaagcc tccagtgccg
    17401 attatttaat tgcgattggt ggcggctcac cgattgatag tgccaaagcg attggtatta
    17461 tcatcaataa ccctgagttt agcgatgtac tttcattgga aggtgtcgcc ccaacccacc
    17521 aaaaatgtgt gccgattatc gccattccaa ctaccgcagg tacagccgca gaagtcacga
    17581 ttaactatgt cattaccgat gaagcgaaaa aacgcaaatt tgtgtgcgtg gacgttcacg
    17641 atgtgccggc agtggcgtta gtcgatccag atatgatgga atctatgccg aaaagcttgg
    17701 ctgccgcaac cggtatggac gctctcaccc acgccattga aggctacatt accaaagcgg
    17761 cgtgggaatt aaccgatgct ctacacctta aagcgattga gctgatcggc cgttcattgc
    17821 gtggtgcagt ggagaaaaat ccgaaagatg tcgaggcaat ggcattggga caatatgtgg
    17881 ctggaatggg cttctccaac gttgggcttg gcgcggttca cagtatggca cacccgcttt
    17941 ctgcctatta cgacacccca cacggcattg ccaacgcagt attactgccg tatgtgatgg
    18001 aatttaataa aaattacacc ggcgaaaaat accgtgaaat tgcccgagca atgggggtaa
    18061 aaggcgtaga tgaaatgagc caagaagagt accgcaacgc cgccattgct gccgtacaac
    18121 agctttcaca agatgtcggc attccgccaa aactgcatca aatcggcgtt aaagaagccg
    18181 atttagcggc attatcggtc gatgccttta atgatgtctg caccggtggc aacccgagag
    18241 attgtacggc tgaggagctg ttggaggtat atcggatcgc atactaagtt ctatctttgt
    18301 taaatagaca agcggtgatt ttttaataaa aatttgca
//
LOCUS       DANLXB010000029        18142 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLXB010000029 DANLXB010000000
VERSION     DANLXB010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18142
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(84..4070)
                     /gene="hrpA"
                     /locus_tag="PXD41_000657"
     CDS             complement(84..4070)
                     /gene="hrpA"
                     /locus_tag="PXD41_000657"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL6288216.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
     gene            complement(4174..4626)
                     /locus_tag="PXD41_000658"
     CDS             complement(4174..4626)
                     /locus_tag="PXD41_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL6288217.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(4689..4958)
                     /locus_tag="PXD41_000659"
     CDS             complement(4689..4958)
                     /locus_tag="PXD41_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288218.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(5056..5652)
                     /gene="grpE"
                     /locus_tag="PXD41_000660"
     CDS             complement(5056..5652)
                     /gene="grpE"
                     /locus_tag="PXD41_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL6288219.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            5874..6968
                     /locus_tag="PXD41_000661"
     CDS             5874..6968
                     /locus_tag="PXD41_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL6288220.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            7104..8495
                     /locus_tag="PXD41_000662"
     CDS             7104..8495
                     /locus_tag="PXD41_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL6288221.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            8554..12078
                     /gene="recB"
                     /locus_tag="PXD41_000663"
     CDS             8554..12078
                     /gene="recB"
                     /locus_tag="PXD41_000663"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL6288222.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(12120..12602)
                     /gene="greB"
                     /locus_tag="PXD41_000664"
     CDS             complement(12120..12602)
                     /gene="greB"
                     /locus_tag="PXD41_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL6288223.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(12653..13933)
                     /gene="pepB"
                     /locus_tag="PXD41_000665"
     CDS             complement(12653..13933)
                     /gene="pepB"
                     /locus_tag="PXD41_000665"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL6288224.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(14072..14893)
                     /locus_tag="PXD41_000666"
     CDS             complement(14072..14893)
                     /locus_tag="PXD41_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL6288225.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            15041..15984
                     /locus_tag="PXD41_000667"
                     /pseudo
     CDS             15041..15984
                     /locus_tag="PXD41_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            complement(16097..17260)
                     /locus_tag="PXD41_000668"
     CDS             complement(16097..17260)
                     /locus_tag="PXD41_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6288226.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(17326..18141)
                     /locus_tag="PXD41_000669"
     CDS             complement(17326..18141)
                     /locus_tag="PXD41_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6288227.1"
                     /translation="MTLPFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFA
                     TGRNHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDD
                     QNVCLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEA
                     LVPIEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGD
                     GMNDVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         4905 a         3798 c         3946 g         5493 t
ORIGIN      
        1 cgagaggaat aggtattcga gaaaacaagc ggtcagagtt gcaaaatttt ttacttatct
       61 gaccgcttgt tgtataggga atattacttt atttcattga tcacattcaa aatccgctta
      121 tccgaaatcg ggtattttgt gccgagctgt tgagcgaaca gactgacccg cagttcttcg
      181 atcatatatc gaatttccag tacctcgtcc ggcaccgctt tggattttgg cagtttggca
      241 aggagctgtt tatatgcctc ttgcactgct tccacccgta gcattttggc tcggtcggtg
      301 ttgctgtcca ccaacagttt atccaaacgg cgttcgatag cggtcaaata acggtataaa
      361 tctgcaaggc gggcgtagcc ggttttggtg acaaagtcgg ggtaaatcag cccttcgatt
      421 tgggttttga tgtcgcttaa cgcaaacgcc atcgtaaaat cgagcttgcc ttttaaccgc
      481 ttgtttagct cgtaggccag tgtgaggcac ttttcaacct gtttggcaat ttctacggtt
      541 ttatcgttta aatttgcccg cacaaattcg tgcagttggg tgaatttttc ctccgtccag
      601 acaaacccgc cgaactcttc taccagctga tctaccgcac aggcaatgca gtcgtcaatc
      661 agctccaata ctttgccgaa cggggcaaaa tataagccca gcttggcttt gttcggcagt
      721 ttttcgtgta gatatttaat cggcgatggc acatttagca acagcagacg gcgaagtcct
      781 gcctgcattg cacgagcctg ctcaaattcc gtttcaaaca gtttcacccc cacagccgtt
      841 tgttcatcga caatcgcagg gtaggctttc acgctgaaat gggctttttt ctgctcatag
      901 aactgtggca attcggcaaa attccaaata tgcacaccac tttgctcaat gccgtcatcg
      961 gcaatgttgg aaagggtgtt ctgcacctca tctttcaagg caaatttcag ctcatcaagg
     1021 ttttcgctct cttgcagttt cttgccttta tcatcaatca cacggaaagt catccgcaaa
     1081 tgtggcggca gttggcttaa atcccactgt tcaggctcga ccaatacacc cgtcattcgg
     1141 cgtagttcgt ggcttagatt gtccagcaac ggttttttaa acggctcggc tcgccctaaa
     1201 aaggcgtccg cataattcgg cgccggcaca aaatttcgcc gtagcgattt cggtaaagat
     1261 ttaatcagcg agacgatcag ctcgtggcgt agccccggaa tttgccaatc gaaaccttcg
     1321 ggttccactt ggttaagcag cggtagcgga atatgcaccg tcacgccatc gtgatctttt
     1381 ccgacctcaa actgatagct cagtttgagt tttaaatcgc cttgatgcca gaaattcggg
     1441 aaatccagct cgctggcaag gttggcgttg tcgttgatca ggaacgattt ttcaaagttc
     1501 agcagttcag gatctttttt gcttgcctgt ttccaccaag tatcaaaatg cttgctcgac
     1561 acaacttcgg tgccaatccg ctgatcgtaa aactcaaaca gcacctgctc gtccaccaaa
     1621 atatcacggc ggcgggattt gtgttccaat gcctcaactt cacggatcaa gcggtgattt
     1681 tctttgaaaa atttgtaatt gttgtgacat tcgccttcca ccaacgccga gcggataaaa
     1741 atctcacggc tgacggttgg gtctatcgag ccataattca ccgagcgttg tgccacaatc
     1801 ggaatgccgt agagcgacac tttttccgat gccattaccg ctccttttga cttcgcccag
     1861 tgtggttcgc tgtaactgga tttagtgagg tgtactgcca acggttccac ccattccggc
     1921 tcaatgcgag cgaccattcg tccccaaagt ttggtagttt ccaccagctc tgcggccatt
     1981 acccatttcg gctgtttttt gaaaagtgcc gagttcggga aaatgaaaaa gtgggcattt
     2041 cttgctccta aatagtgcat tttttcatta tctttcaagc cgatatgcga caacaagccg
     2101 gcgagcaggg cggtgtgaat cggctgataa cttgccggct cactgttaat ttttaagccc
     2161 atttctctaa ctgcaaggcg gagttggtgg tagatatcct gccactcccg cacacggttg
     2221 tagttcaaat aatccttacg gcagagatta cggaactggt ttttcgacag ttctttttgt
     2281 tgggcttgga taaagtgcca caaattcaca aaggctaaga aatcgctctc tttatcggca
     2341 aaacggcggt gtttatcgtc tgccgactgc tgtttttcct gcggacgctc acgagggtct
     2401 tggattgaga gagctgacac aatcatcatc acttcgtgca acgaaccgtt tttcgccgcc
     2461 tcgatcacca ttctgcctaa gcgaggatcg actggcagtt gggcgagttg gcgaccgatt
     2521 ggggttaatc taaacccatc cccccgttta cggggggagg ttgggagggg gggagtgcca
     2581 tcattagaac ggatttcccc cctccctagc cctcccccgc aagcggtgga ggggattttt
     2641 tcatttggaa taatcgcctg taattcttcc aacaaccgaa tcccgtcctg aatttgtcgg
     2701 ctgtcagggg catcaacaaa cgggaaattg gcaatatcac tcaatccaag cgaagtcatt
     2761 tgtaaaataa ccgctgcaag gttagttcgt agaatttcag gatcggtaaa ttgtggacgg
     2821 ctgttgaaat cctcttctga atagaggcgg atacagatcc cttccgaggt tcgcccacaa
     2881 cgccctttcc gctggttggc ggaggcttgc gaaatcggct caatcggcaa gcgttgcact
     2941 ttggtgcggt agctataacg agaaatacga gccgtgccgg tgtcgatcac atatttaata
     3001 ttcggaatag tgagggaggt ttctgccacg ttggtcgcca gaataattcg gtttagccca
     3061 ccgcttggct ggaaaatccg ttgttgttcg gcagccgata agcgggcgta aaggggtaaa
     3121 atttcgctat gtcgcagttc ctgcttttgc aaggcttcgg cagtgtcacg aatttcccgt
     3181 tcaccgttca taaaaatcag aatatcgcca cgcccttcgg cttgcagttc gtccaccgca
     3241 tttagaatac cttgcagttg atcttgatct tccactatcg ggcgataacg cacttccacc
     3301 gggaatgtcc gaccagagac ttcaataatc ggggcgttgt tgaaatgttt ggaaaaacgt
     3361 tctacatcaa tagttgccga ggtgatgatc actttcagat cggggcgttt gtgcagaatt
     3421 tgtttcagat aacccaaaat aaaatcgttg ttcagcgaac gctcgtgagc ttcgtcaata
     3481 atcagcgtat cgtactgatt taaatagctg tcgtgctgga tttccgccag cagaataccg
     3541 tccgtcatta gcttgattaa gctgttttca ctgacttgat cgttaaagcg gactttgtaa
     3601 ccgaccgtct cgcccagttc cgatttcagc tcttcggcaa tgcgagtcgc caccgaacgt
     3661 gcggcaattc ggcggggctg ggtatgccca atcaagccct tcaccccacg cccgagttct
     3721 aagcacattt tcggtaactg ggtggttttg cccgaaccgg tttcccctgc gatcaccacc
     3781 acctgatttt cgctaatcag ttttaaaatt tcctcacggc gagcggaaac aggcagatca
     3841 gggtagtcaa ttttcaggtt ttgggcgtgc tgagttcgtg cgaaaaaacg tgcctgacaa
     3901 gcggtgagat cttgcgaaat ttctgccaaa actgaccgct tgtgatcgat gtttttaata
     3961 ttttccgccc cttttaagcg accgagcagg cggcggaaat cggcggtggt gatattttcc
     4021 agcttcacaa gcggtggttt cttatgattt ttttgcaaag gtgtttccat ttaatttctc
     4081 ttttgcatta agaccttgtg atttattgta gggtgggcgt aagcccacgt aacagaatag
     4141 ggattttatg cgtggactta cgtccaccct acattaggtt ttaccaacaa tcagtgacaa
     4201 aatccctgcc gcaatcaacg gcccgaccgg tacgcctttt aagaacgcca cgccgatcac
     4261 cgtgccgatt aaaagcccag ttaccaacac cggctggctg cccattaaat tcacgcccct
     4321 gccacctagc cacgctacca gcacgccagc aattattgag agtgccattt tccagttcaa
     4381 tagttgggca agttcgggaa gcgtaattcg ccctgaaacc aaggggctaa gtacgccgat
     4441 ggttaaaatg ataatcccga tttttaagcc gtattgatcg acaaagggga taaatttaga
     4501 aagtaaggtt tgttgcataa tcagcaatac ggcggctgaa atagtaaccg cactgttttg
     4561 gctgatcagc cctaaaataa tcagcaccac aagtagaagt gccactgcgt taaattgtaa
     4621 agtcatagga ttaaaacgta aaaaccctta cttcatagaa gtaagggagt ggttaattaa
     4681 acgttgagct agttaataaa tttcattatt gccattaaaa agccaagaat tgtgatattt
     4741 aaggtaattg ctttaaatat cgtggtattg atttcatttt ttagcttttc aagttcaagt
     4801 tgcaaatcag cttttgttgc tagtgggctt tgactttgct ctaaggcttc atcgagagca
     4861 ttagcaaatg cctcagccat ttcaggtgtt tgattggctt cttgcaagcg ttttacaaaa
     4921 cgtaatttgt caaatcgtag gctcatagct gcatccattt caattatcct cttgtggtta
     4981 agttataaac taatttagca taatcacaag caggaatttt aggagatttt gtgatcttcg
     5041 tcgaaaatcg acaatttagt ttgccaccat caccattgcc gggcgaatca ctcgtccgtg
     5101 aagcgtgtag cctttttgta gcactgtgct gacatggttg gcttcaattc cttcggcagg
     5161 ttgcattgaa atagcttcgt gcaattcagg gttaaatgcc tcgcctactt cgccaattgc
     5221 caccacacca aatttagcca gtgtattgat gaattcttta tgagtcattt caacgccgtc
     5281 aactaacgct tgagtggttt catcggtcac ggctttatca agggcatcta atccacgttc
     5341 aaggttatca accactgtta acaattcttt ggagaatttt tctaaagcga atttgtgagc
     5401 tttttcaaca tcttgctctg cacggcggcg gatattttga atttctgctt gagccctaag
     5461 ctgaatatct tgctcacgtt tgtcggcttc tgcaatatag gcttctaact cggcaattcg
     5521 agcttgagcg agagctaacg gttcttcttg aggtgtattt tgttcttccg cttgagtttc
     5581 ttcagttaca acttcaggtt gaatttcttc ttgttttact tcttcttgta agtgttcatt
     5641 ttgagtggtc attttttatc ctttaaaaga ctaatctgga aatgtaaatc ttccttaata
     5701 tagcgataaa ttaagggatt tcaagcatat ctctttcttt ttgcgaaaat aattcacttt
     5761 ttaatcagaa aaggcttgca aaatacgggg gggggcttaa aatgccctag tcttttccgc
     5821 ccttaggcaa ggctatattt tttaatcact tttctttaac ggagaaaact taaatgaaaa
     5881 aattagcggg tttatttgca gcaggtttag caacagttgc attaacagcg tgtaatgaag
     5941 aaaaagcggc agagccaaaa gcaactgcgg ctgaagcaaa acctcaagca acaaatcaaa
     6001 cagttcacct ttatacttgg actgaatatg tgcctgaagg tttgttagat gaatttacga
     6061 aagaaaccgg cattaaagtt gaagtttcaa gtcttgaatc taacgaaaca atgtacgcta
     6121 aattaaaatt acaaggcaaa gatggcggtt atgatgtaat tgctccatca aactactttg
     6181 tatctaaaat ggcgaaagaa ggaatgttag cggaattaga tcacgcacaa cttccggtta
     6241 ttaaagaatt aaaccaagat tggttaaata aaccttacga tcaaggaaac aaatattcat
     6301 tacctcaatt attaggtgcg ccgggtattg catttaatac ggcagattac aaaggtgaaa
     6361 cattcacttc ttggggtgat ttgtggaaac ctgaatttgc aggtaaagta caattattag
     6421 atgatgctcg tgaagtattc aacattgcgt tattaaaatt aggtaaaaac ccaaatacaa
     6481 ctaatccgga tgaaatcaaa gaagcctttg aagagttgaa aaaattacgt ccaaatgtgc
     6541 tttcatttac ctctgataac ccggcaaact catttattgc tggtgaggtt tctgtaggtc
     6601 agttatggaa cggttctgta cgtattgcga agaaagaaaa cgcaccggtt gatatggtat
     6661 tcccgaaaga aggtcctgtg ctttgggtcg atactttagc cattccggca aatgcgaaaa
     6721 acaaagaaaa tgcacataaa ttaatcaact acttattaag tgcaaaagta gctgaaaaat
     6781 taacgttagc gattggttac ccaacttcaa acgtagaagc attaaaagta ttaccgaaag
     6841 aaattactga agatacagca atttacccat ctgcagaggt tttacaaaaa tctcaatggc
     6901 aagatgatgt tggtgatgca attgagcttt acgaaaaata ctaccaagag ttaaaagcag
     6961 caaaataata gctgattaat tctgaagcct ctagggagca atctttagag gctttctctt
     7021 ttgagttgca aaaaatttgg caaaaacgac cgctttctaa ggtacaatca taaaaacata
     7081 cttagatttt gagagattaa accatgaact taagatggca agaatatcct gaaaatgccc
     7141 gcaaattatt taaactatcc ctacccattt ttatttctca gctttcagct tccggaatgg
     7201 ggctggcgga tattgtaatg gctggcttgg tgagtgatga tgatgtctcg gcgattgcgg
     7261 taagtaattc gatttacttt ccgctctttc tgtttgtgtc agggttgctg aatgcaatta
     7321 ccccaaccgt ttcttactta aacggctcga gcaatcgcca tttaattgct aaccaagtaa
     7381 ggcagggcta ttggattgtg tttgcaatgt ctattccatt aatggcaatt ttcctaaaca
     7441 gccatctgat tttagactta atgcaaacac cggctgagtt ttcaatcaaa tcgcaacaat
     7501 atttagcagt aatggcagtt gggcttattc ctgctttgct ggcggtgagt ttacgttgta
     7561 tgaacgatgg attatctaac cctaaacctg cgatgcggat tacctttttc ggtttattgc
     7621 tgaacattcc gctaaactat attttcattt tcggcaaatt tggcttgcct gaaatgggag
     7681 cggtaggctg tggtgtagca accgcaattg tgaacttgat tatgtttttt atgttgttgc
     7741 attattgcta caccaattct gcccaaaaag atattcgttt gtttgagaaa tggattgatg
     7801 ctccaagcgg tcaaattttg ctaaaacttt gcaaattagg gctgccgatt gcctttgcga
     7861 tttttaccga agtgatgctg ttttcgacct catcgctgtt tctgtcacca cttggttcac
     7921 aggtggtggc tagccaccaa gctgcattgc aaaccagctc gctatttttt atgattccga
     7981 tgtcgtttgg cattgcaacc accattatga tcggacaaac acttgggcag aaaaatgtgg
     8041 agggggcgaa aatcttaagt taccacgcac tgattaccgc aaccgcttta gctattattg
     8101 ccgccatcat tattattttg ttgaaaaatt ttatcccttt tgcgtttacc aacaacccga
     8161 tttcgattgc gattaccgct catttattga tttttgcggc ggtttatcaa ataccggatg
     8221 ccattcaagc ggtagcaaac ggcattctgc gtggttataa acatacccaa ccgattttat
     8281 acgttactct gttttgttat tggggggtga gtatgccgct gggctacatt ttggcaagaa
     8341 ccgattggat tgtacaacca atggctgctc aaggtttttg gttagtcttt tgtatcggct
     8401 taagtttggc tggtggcttg ttattatggc aaatgcgaaa aatacaagcg gtgccaaaag
     8461 cacaattaat tgcaaaatta gaacggatta aataacagat tctctgctat ggaacatagc
     8521 agtgcttttt acttttagaa gataactttg ctgatgaaaa acctaaatcc tatccaacta
     8581 cctttgaata aatccgtttt aatcgaagcg tcggcaggta cagggaaaac ctttaccatt
     8641 gccaacctgt atttgcgttt attgctcggc attggttgca acccgttaac ggtggaacaa
     8701 attttggtgg tgacatttac caaagcagca accgaagagt tgaaaaaccg tatccgtaaa
     8761 aatattcagc aatgtgccga ctttttaaaa gatcaagctg atggtttgga agtggaaagt
     8821 acaaaatcct atcgaaacaa ccttgatttt ttggcacaga tttatccgct cattccgaat
     8881 attcacgaag cattgttacg tttaagtatt gccgaacggg aaattgatac cgccagcgtg
     8941 tttaccattc acggcttttg tcaaaaaatg ctggttcagt ttgcgtttga gtcgggcgtg
     9001 cggtttgact tggatttaca gccaaaccaa agtgatctac ttaaaaaatt aagtgaagaa
     9061 gtctggcgag agcaattcta tccgcaagat ttagccatca cttatgcggt tgccgaacaa
     9121 cttggtacgc cggaatatgc cctcaatgcg gtaaggcgtt atttatctac tgaattacct
     9181 gaaccaaatg cctctttaaa tcaagatatt gccgagcatt tggctcaata tcagcagttt
     9241 attaatgagg tgaaatccta ttggaaaacg cattcagatg aactggttga aactatccgc
     9301 cacgatttaa agcataaaat tacgctgcac ggaggttggt atcgagcgac cacttttgaa
     9361 gccggtgtgg aagtgatgaa ccagtgggct aattcgcaac ataaccattt cccggcaggg
     9421 ctttatttat tcactacaga gaaaattgcg gctggcacga aaaagagctg tgagccgata
     9481 gattcccctc atcttgcaaa aaatcaggct tttttgaccg cttacaagga acgttttgaa
     9541 aacagcttgt cagcaatgtt gcagtatcaa tttttaattg ctctcaaagc aaaattggca
     9601 gagtacaaac aatcgcaccc acaacgcagt tttgatgatt tactcacaat gctaaaccaa
     9661 gcgttgaaaa atctacacac gggcgaagcc ttgtctcaga aaattcgggc gatgtatcct
     9721 tttgcgatga tcgatgagtt ccaagatacc gatttaaccc aatatgaaat tttcagccaa
     9781 atttttatgg cagagaatgc agagaacggc tttattatga ttggcgaccc gaaacagtcg
     9841 atctataaat tccgtggggc ggatattttc acgtatttgc gagcagcaaa gcaggctgat
     9901 gaacaattca cattgggcaa aaactggcgt tcgttgcctg aagtggtgca agcggtcaat
     9961 aatttgtttt cttttgcaaa tgataactct ccgtttcttt atgaggatat tggctttcac
    10021 ccagtggagg ctgatagcca aaaaggtcag ttagttagtg agcaagggca ttttgtaggc
    10081 tacatcacgg aaaacagtaa attagatgat ttggctgaaa tgtgtgctta tcaaattcat
    10141 caacagcttg aggcgatggc tcaaggcaaa ttcggagttg aaaaaaacgg cgaatttcaa
    10201 tcctttgctg caaaagatat tgcgatttta gtccgaaaag gttcacaagc taagcgaatc
    10261 aaaaaggcgt tggcaaaacg taatatcaaa tccgtctatt tagctgaatc agcttctgta
    10321 tttggttcgg aaattgcaac agaattgtgt tggttattgc aagccgcact gaatccgtat
    10381 cattacaagg cattattatc ggcgttaggc tcaaccttgt ggggcttaac ggcggcagag
    10441 atccaccgct ataaggaaaa tgagcaactt tgggatctga aagtcaatca gtttgtggaa
    10501 tacagcaaca tttggaaaga gcagggcgtt ctgccgatgt tgcataaaat ctacttggag
    10561 cagggcatta tcgaacgttt gaaaggtttg gaaaatgcgg atcgcttgat tacggattta
    10621 ttgcatttaa ccgaaatttt gcaggaaacc tcgcaagcgt tagagtctga agctgaactg
    10681 ttgcggtggt atgaaaagca agttaattcg cccgatttta atgacgagca acaacttcgg
    10741 ttggaaagtg aagaggagct aatcaaaatt gtgacgattc acggctcgaa aggcttgcaa
    10801 tatccaattg tttggttacc ttttgtttca caaaaaagtg agggagacac gcagacagca
    10861 ttaagtttat atcgcaattc tcaaggtgcg ctggattggt gtttaggctc agaagaggca
    10921 agtttttcgc tacagtatga ggcttatgcg gaagatttac gtttgctgta tgtggcatta
    10981 acccgcgcgg aatctcagct taacttagtg ttgccgaaag agatttccgg ctggtctcca
    11041 ctccattact tgttagcaga cggggaaata cctacaggaa aagtgcctgt ttcagattat
    11101 tttagccaaa aacggattgc tgctaatttg gttgaagtag ccggggaatt acctttctca
    11161 ctgtgggaag gagaacaatc ttcagacgat taccaagcaa aaacctttag tggcaatatc
    11221 cgtgtggttg gtcaaattac cagctttact tcactttatg cccaacacga gcgttttagt
    11281 gaagggaaat cagaaagggt aatggattta gcccaagatc gagatgtaca tatagaaacc
    11341 attgaggcag gttattcaag tgaaactgcc gctttctcgc cattccaatt cccacacggt
    11401 attaaagtgg gcacggtgtt acatcacttt tttgagcatt gccaatttaa cgaacaaatt
    11461 gatagagagg ctgttgctaa agtatgcgag caattagggc taagcgagga atggattgaa
    11521 ccaacagcat tatggtttga gcgtattcta actacccctt tggcagaggc aaatttctgc
    11581 ttaaaagcga ttgatgaaac caaacgatta aacgagtggc aattctattt acgcttaaaa
    11641 aatgataaag ccttacatca attaaatgcg ttattaaagc aacatagccc tttagcaaaa
    11701 actttacctg aattgcaatt accgcaatta gaaggttttg tgcgaggctt tgtagattgt
    11761 atcgtgcaag tggaggagaa attctactta attgattaca aatcgaattt cttaggctat
    11821 ctgccacaaa attatgcgaa agaacacatt caacgggaaa tgggcagaca acgctatgat
    11881 ttgcaatatc tgctttacac tctcgcctta caccgttatc taactgcccg tttaggtgaa
    11941 aaatacgatt atgaacgaga cttcggcgga gtggcttact tgttcttaag ggcaatgaac
    12001 ggcgaaaatg ataacggcgt ttattttgac aagccgacta agcagttgat tgaagaaatg
    12061 gatcggttgt ttgggtaaat atgtgtaggg gcgaaaattt ttcgcccctt tatgggtaat
    12121 taactcgctt gctcatacca aatcttattg atataaagca acactttacc aagcggagtt
    12181 tctaccctaa tttcatcatc aacctgtttg ccgattaagg ctcgggcgac aggggagtca
    12241 atcgaaatcc agttttttgc tgggtcgaac tcatcgcaac caacaatacg gtactgtttt
    12301 gcctcgccct cttcattttc taattccacc caagcgccga aaaagacttt gccttcttgt
    12361 ttagggtgat aatcaacaat ttgtagcacc tctagccgct tagataaaaa acgcacacgg
    12421 cggtcgattt ctctcaaacg gcgtttgccg taaatatatt cggcattttc gcttcgatca
    12481 cccaatgcgg cagcatcaga caccgcttga gtcactttcg ggcgttcttc ccgccataga
    12541 aattttaatt cctgatctaa ggcttgccag cctgaacggg taatgtaatt tgatttagcc
    12601 atagttattt aattgtttat ggagcaaata gtgatttgcc cctacgaagt ttctattttg
    12661 aaagcaataa attcgctact gttcttattc ccagtccggt tgctcctgcc gcccataaat
    12721 cgctcgccgt tttgcggaat gtggcagagg cgtcaatatg tagccagttt tgctggtagt
    12781 tttctacaaa gtaagataaa aatgcggtgg cggtacttgc cccagccccc accggcacag
    12841 agccgatatt ggcgatgtct gcaaaggaag aagcaatttg cccacggtga aattcttcaa
    12901 acggtaaacg ccagaacggt tcattttccg ttttggcaga cttaaatagt gcttcggtta
    12961 ggttgtcgtc cattgaaagc accgagtggt agtcattgcc gactgcgact tttgctgctc
    13021 ctgtgagggt tgcagcatca ataataaatt gtggattttg cttgcacgca tcaattaaac
    13081 catcggcaag cactaaacgc ccttcagcat cggtgtttaa aacttcaaca gttacgccat
    13141 tgcggtaagt gataatatcg cctaatttga acgcattgtg gctgaccata ttttccgcac
    13201 agcagaggta gagtttcact cgtttattca agcctcgagc aatggcaaaa gcaagtgagc
    13261 cggttaaaag tgccgctccg cccatatcgg ttcgcattgt gctcatacta tcgcttggtt
    13321 ttagactata accgccggtg tcaaaggtaa tgcctttgcc gaccaagcaa gccagtacct
    13381 gtgcgttttc atcgttggtt gggttgaagt ctaatactaa gaatgcaggc ggattggcag
    13441 agccttttcc aactgtccaa atgccgtgat agccttgttc ttgtaatgct tcgccacgaa
    13501 tgatctggta agaaaccgta ttcggttttg ccattttttg gataaactcg accgcttgtt
    13561 cggctaattt ttcaggggtt aatttatctg atggcttatt aattaattca cgcacgaaag
    13621 tggcacattt tacacggtta tcaaattcgg cttgctgttc gtctaagtct gggtattgta
    13681 ccgagccttg attttttacc gaatgaaatc cttgatgaaa cgcccagcag gattctaaat
    13741 cccaactatc gccggtcagc tccacggttg aaataccttg atttttaatt ttgcgggcgg
    13801 ctttttgaat agtggctaaa tcgttgttcg gattatgtac ggtaaacccc gcatcatttg
    13861 cggaaagaat agcattttta ccccaaattt caggggcgtt ttgagtagaa agtgaaattt
    13921 tcattgctgt cattatcggt ttccttagaa aatggatttt gctttatcct aacaaacttt
    13981 tgcaaagttt tatacaaaaa tgaccgcttg cagagcatag ccttgacaag cggtcattgt
    14041 ttcgtgtttt tacaacctga ttaaggacgg attatttgcc gtcccaagct ttaattgcat
    14101 tgtggcggat tttaacacgg ctttcagcat tgcctttgta gtaatcttta tctaaaccgc
    14161 cttcccagtc gccatagttc gggttcggta acataatgaa ttttttaccg aattgttggc
    14221 tgttttcggc tacgaatgca cggcgttccg cgtttgattt acggtaagtc gcatcgccga
    14281 aatcgtttaa gttgtcgcca atatagagca cgatttcata gccttgtttt tcgatttctt
    14341 caaagcgagg ggttttgttc gatttgtctt ttttcaacaa gagtgtttgt tcgctcacac
    14401 cactaaagcc taatttgttc atatcatcaa tagtaccggc tttttcactg ctgtctttac
    14461 ggtttgaaac atagaacata gttcctttgt ggctattaac gtagttgtta aattccactg
    14521 caccggcaat cgctccggtt tggcgggcat ttacccaacg agtccagctt tcaccatcaa
    14581 acggcttgtg gtttttaacc tgccagccgg cataaaggct gttgtccacc atagtttcat
    14641 ctaaatctac taccacggct tttttcttgc cttttttcac tttggcttgg tcgaatgcca
    14701 ctttcgctgc attgaatgct tgatgggcaa gagcttggta ttcgccggat tgttgcatcc
    14761 agtttatccc taatgtagct tgctcttgca acaccatttg atgatgctca tcgctgtttt
    14821 tatgcgtgtg cgaacaagca gttaatacaa ataaagctgt gaggctcata gcagaaagtt
    14881 tgatgttttt catacgtata tccttagttt tattgttgat aaacagagcg attataccta
    14941 aaaagagttg cttatggcta atagtttatt gctcctattc acttttaaag caaactaagg
    15001 tagcctagta acctttttat aacaattaca cagaggctat atgcaaacat tattaaaatt
    15061 tacacaattt atcagcaaaa ccttcgccat ttgggtggtg ttttttgctt ttatcgcagc
    15121 acaatttccg gaaaccttta agcaattcct gccttggatt ccttatctgt tagggattgt
    15181 gatgttggga atggggttaa ccttaacttt caaagatttt gccgaggtaa cgaaaaatcc
    15241 gaaatcagtg attatcggcg tgatcgctca attcgtggta tgccgagtgt agcttatgga
    15301 ttggcaaaag catttaactt acccgcagat ttagccattg gtgtgatttt agttggttgt
    15361 tgcccgggcg gtacttcttc aaacgtgatg acctatttgg ctcgtggcaa cacagcgtta
    15421 tcggtagctt gtaccactat ttcaacttta cttgccccag tgctcacgcc ggcaattttc
    15481 tatttatttg ccagccaatg gttagaaatt aatgcaacgg caatgtttat ttcggtgttg
    15541 caaatggtgc tattgccaat ttttgtgggc gtggtgattc gtactatttt caaacaaaaa
    15601 gtagagcaat ttagccaaac aatgccatta atttcagtga ttgcaatcgt attaattgtc
    15661 acggcggtgg tgtcagttag ccgagatcgt attattgaat ccggtttatt aatttttgcg
    15721 gtagtagcat tacacaacgg tttaggttat ttaatcggtt atttggcgag ccgtttatta
    15781 aaattaccga ttgcagacag caaagcggtg gcgattgaag tggggatgca aaactcagga
    15841 ttgggggcag cacttgccgc attacacttt aaagccaacc ctatcattgc ggtgccaagt
    15901 gcggtattta gcttctggca caatatttca ggcccgattt tggcgatgat tttcgctaaa
    15961 atgaaaaacg ataacgaaaa ataaaattcg ttttaataca gacgttttaa tgttttaata
    16021 aagaatagac aaacggttaa atttttctaa ttttttgcaa aatgttcaga aaatttaacc
    16081 gcttgttgtt tagaatttag aacattcttg gtccacgtgc agtgctgatt ttttcatcat
    16141 ccgctctttg ggtaacaatc acttgatcac cctcatttaa gcctgctaat acttcggtat
    16201 tttgcgtatc cgaaatgcca atttggattt ttctttcaac cgactgctca ttttccagca
    16261 ccaacacata attctcttta ccacgttttt tgattacgct ggtgggtaca actaaaacct
    16321 gttcccgttt atcaatagta atttgggctt gagtagtcat tccgatgcgt aaactgttat
    16381 cggcattatc aacggaaaca ttagcgtagt aataaaccgc ttcggtatta cccgattgtt
    16441 cggtgtagtt attatcggtc agcgtggtga gtgccggatc aactgaatca atggtagcac
    16501 tatattctcg atttggctca gcaagggtgg aaaacttaac tttttgcccg actttaacct
    16561 gtgcaatatc gccctccgaa atttcaagtt taatcagcat cttagataaa tctgctacct
    16621 gtacaatagt tggcgaagtt tgattggaat tgaccgtttg cccgacagaa accggtacag
    16681 acacaatcac gccgtccatt ggcgagataa tttgcgtata agttaagttg gttttagcat
    16741 cgtttaccga aatttcagcc gattttaatt gtgctttaat gttatccacc gtggctttgg
    16801 ctgaagctaa ggtattttta gccgtttcaa gatcgtttaa agaggcacta tttgcccgat
    16861 agagtttatt taagcggttg tagttcgatt gagctacttc aagtgcaacc tgtgcagagg
    16921 tgagctgtgc tttataagaa gaaagccggg cttgagcggt gcttaaggtg ttgctctggt
    16981 tgctggaatc aatatctgca attaaatctc cttgcttcac cgattgcccg agctcgacat
    17041 agagtttttg gattttgccc gaaacttgag cccccacttc ggtgcgttta ttcgctcgaa
    17101 ccgaaccggt tgccagcaca tttttgttaa tttctgcccg tgtgacagct tgggtaatgt
    17161 aatggatttg cggtttattg gtttgttgct gataataaaa atagccgcct attccgagag
    17221 cggcaattag cacaagagtg gctaatgttt tacgtttcat actgttcctt gatgatatac
    17281 aagcggtcaa atttagacaa aaatttgcaa aaaagttgct ctcaactaaa caatgccaaa
    17341 tgtggctcga agatagcttg ccaccgcttc atctttgtta aagccaatca cttcattatt
    17401 cggtaatacg gcttttaaac gtggatcggc attacccatt aaacaacctt tgccggctaa
    17461 acttagcatt tccacatcat tcataccgtc accaaaagcg atacaatcgg ctaaggtgta
    17521 gccccgtaat ttgaccaatt cggcgagagc attggcttta cacactcctt ttgccatcac
    17581 ttcaaggcaa agtagggcag agtaggtcat ttgcacacgg tcgccatagg tatcccgaat
    17641 ataatgttca atcggtacta aagcttcagc agttttgccg ataaaaaaca ctttctcggt
    17701 atttcgaccg tgatgatgag caaaatttac tacttgatag ctaaatcctg aatcttgatg
    17761 gaattttttt aactctgcaa tctctttatt gataaaccat tcatcgcctt gatagctgtt
    17821 taagcacaca ttttggtcgt caaattcaat gttcattaat tcaaaggcaa gatcttccgg
    17881 taaataatgg ttgagaattt ttttaccctc taaattgttg gctcttgccc cgtttgaagt
    17941 gactaacatt gcatttttaa cgtttacttt cccaataatc tgagacacat ctggatgatt
    18001 gcgaccggtg gcgaaaaaaa tatcaacacc tttttttgat agttgttcta atgtatcaat
    18061 agtgaaatca ccaattttat gattggcatt taatagtgtg ccatcaagat cggaaataat
    18121 tgcacgaaat gggagagtca ta
//
LOCUS       DANLXB010000030        18033 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLXB010000030 DANLXB010000000
VERSION     DANLXB010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18033
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            160..1122
                     /gene="ribF"
                     /locus_tag="PXD41_000670"
     CDS             160..1122
                     /gene="ribF"
                     /locus_tag="PXD41_000670"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL6288228.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            1225..4041
                     /gene="ileS"
                     /locus_tag="PXD41_000671"
     CDS             1225..4041
                     /gene="ileS"
                     /locus_tag="PXD41_000671"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL6288229.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            4166..5713
                     /locus_tag="PXD41_000672"
     CDS             4166..5713
                     /locus_tag="PXD41_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL6288230.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            5783..7150
                     /gene="pssA"
                     /locus_tag="PXD41_000673"
     CDS             5783..7150
                     /gene="pssA"
                     /locus_tag="PXD41_000673"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL6288231.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            7205..7948
                     /gene="rlmB"
                     /locus_tag="PXD41_000674"
     CDS             7205..7948
                     /gene="rlmB"
                     /locus_tag="PXD41_000674"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL6288232.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(8035..9447)
                     /locus_tag="PXD41_000675"
     CDS             complement(8035..9447)
                     /locus_tag="PXD41_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6288233.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(9536..10318)
                     /locus_tag="PXD41_000676"
     CDS             complement(9536..10318)
                     /locus_tag="PXD41_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6288234.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            complement(10328..11260)
                     /locus_tag="PXD41_000677"
     CDS             complement(10328..11260)
                     /locus_tag="PXD41_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6288235.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            complement(11480..13054)
                     /locus_tag="PXD41_000678"
     CDS             complement(11480..13054)
                     /locus_tag="PXD41_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288236.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            complement(13313..14893)
                     /gene="prfC"
                     /locus_tag="PXD41_000679"
     CDS             complement(13313..14893)
                     /gene="prfC"
                     /locus_tag="PXD41_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL6288237.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            15115..15990
                     /locus_tag="PXD41_000680"
     CDS             15115..15990
                     /locus_tag="PXD41_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL6288238.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            16063..16650
                     /gene="pth"
                     /locus_tag="PXD41_000681"
     CDS             16063..16650
                     /gene="pth"
                     /locus_tag="PXD41_000681"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL6288239.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            16836..17927
                     /gene="ychF"
                     /locus_tag="PXD41_000682"
     CDS             16836..17927
                     /gene="ychF"
                     /locus_tag="PXD41_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL6288240.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
BASE COUNT         5162 a         3682 c         4201 g         4988 t
ORIGIN      
        1 ttgtataaat agcagtttta tagcatatct ttgctttaat aattagctac acgaccactt
       61 tcagcactaa aaaaatataa cagattgaat ttttttcctt ttttgtagat ttctcgttat
      121 aatcacagca attttcactt ataaaatggt ttatctttta tgcaacttat tcgaggtttc
      181 cacaacttag acaaacacat cgctttaaat caaggctgtg ttctctctat cgggaatttc
      241 gatggtgtgc atcttgggca tcaaaatatt ttggctcgtc tttgtgatag agctttagat
      301 ttaggattgc cctcagttgt gatgttattt gagccacaac ctcgagagtt ttttgcaaaa
      361 aaaagtggaa attcaaccgc ttgtaacccg cccgcccgct taatgcgcct gcgagataag
      421 ctaaaatatt tggaagaagc cggtgtggat tttgtgctat gcgtgcgttt tagtgaaaaa
      481 tttgctcaaa tttcggcaga cgatttcatc agcgatttgc tcgctaaaag actgaaagta
      541 cgctatttaa gtgtaggcga tgattttcgc tttggggcaa aacgggcggg cagttttgaa
      601 actttacgca atgccggctt aaaatatcgc tttgcggtgg aagaaagcca tacccatagc
      661 ttaaacgaag aaagaattag cagctcatta gtgcgagaag ccttacaaaa caatgagtta
      721 gatttggcag agaaattact cggcaagcct tattcgattc tgggacgcgt tgcacacggt
      781 aataaactcg gcagaaccat tggttttcct accgcaaata ttatgctcaa tcgtttggtt
      841 acgccgattc aaggggtatt tgcggtaaaa gtgaagacca aacagggcag ttttaacgga
      901 atcgccaatg tcggcaaccg cccgaccatt aacggtacta agccgttatt agaagtgcat
      961 atttttgatt tcaatgcctc tatttacggt gaggcgattg aagtgatctt tttaaaaaaa
     1021 ttacgcaatg aaataaaatt tcccgacttt gaagcactaa aagcccagat tgagaaagat
     1081 cgcttgcaag cggttgaatt ttttaaggaa tttgcaaggt gagcctttct agtttccagc
     1141 cccagagggg ctgagctatg cttaacctag tacggctatg ccgtgctagg cataaaacag
     1201 ataattttaa cgagaaataa aaaaatgact attgactaca aaaacacctt aaacttgcct
     1261 gaaacaggct ttcctatgcg tggggatctc gcgaaacgtg aacccgatat gttaaaaaat
     1321 tggtatgaca aaaatttata ccaaaaaatt cgtactgcct cgaaaggcaa gaaaaccttt
     1381 attttgcatg atggtcctcc gtatgctaac ggtaatattc acttaggtca cgcagtgaat
     1441 aaaattttaa aagatatgat tttgaaatcg aaaaccgcat taggtttcga taccccttat
     1501 gtgccgggct gggactgtca cggtttgccg attgagctga aagtagaagg gattgttggt
     1561 aaaccaaatg agaaaatttc ggctgccgag tttcgccaag cgtgccgtga ctatgcgaaa
     1621 gaacaagtag aaggtcagaa agccgatttt atccgtatgg gtattttagg tgattgggat
     1681 aacccatacc taacaatgaa ttttaacact gaggcgaata ttattcgcac gctcggcaaa
     1741 gtgattgcga acgggcattt atacaaaggt tcaaaaccgg tacattggtg cttagattgt
     1801 ggatcttcgt tagcggaagc tgaagtggaa tatgaagata aagtttctcc ctctatttat
     1861 gtgcgtttta atgctgtgga cgtaaatgcg gtagaagaaa aattcaacgc acagggtaaa
     1921 ggtagagggg cattatctgc ggttatttgg acaactaccc cttggactat tccgtctaac
     1981 cgtgcgattg cgatcaaccc tgaattagac tatgccttag tccaattagg tgatgagcgt
     2041 gtgttactag cggtcgattt agtcgaagat gttgcaaaag cagcaggcgt tgaatctgct
     2101 gagattttag caaccaccaa aggcgaaaac ttagaattat tacgctttaa ccacccattc
     2161 tatgattaca gcgtgccatt tatttttggc gaccacgtta ccacagacgg tggtacaggg
     2221 ttagtgcata ctgcaccgga tcacggtgcg gacgacttcg tggtcgctcg caaatataac
     2281 attgaaatgg cagggctaat ttccaatgac ggtaaattca aagcagacac cccgttcttt
     2341 gccggcttag gtgtgtttga atccaacgat aaagtagtcg aaaaattaca agaagtggga
     2401 gcattattaa aattatcccg catcaagcat agttatccgc actgttggag acacaaaacc
     2461 ccgattatct tccgtgctac cccacaatgg tttatcggaa tggaaaccca aggcttacgc
     2521 cagcaagcac taggagaaat caaatcggtg cgttggatcc caagctgggg tgaagctcgt
     2581 attgatacga tggtggcaaa ccgcccagac tggtgtattt cacgccaacg tacttggggc
     2641 gtgccaatgg cgatgtttgt gcataatgaa accgaagaat tacatcctcg cactttagaa
     2701 ttaattgaag aagtggcgaa acgtgtagaa gaaaaaggca ttcaagcgtg gtgggattta
     2761 gatcctgcgg aattgctcgg tgaagaagcc aaagattacc gcaaagtgcc ggatacctta
     2821 gacgtgtggt ttgattcagg atcgacctat gcctctgttg tagaacaacg ccctgaattt
     2881 aacggcaatt cagcggatat gtatttagaa ggttcagacc aacatcgtgg ttggtttatg
     2941 tcatctttaa tgctttccac tgctactaac ggcaaagcac catacaaaca agtgctaact
     3001 cacggtttta ccgtagatga gaaaggcaga aaaatgtcca aatcgcttgg caacgtaatt
     3061 gtgccaagtg aagtgtggaa caaaaacggt gcagatattt tacgcttatg ggttgcctcc
     3121 accgactata ccggtgagat taccgtttcg cacaatattt taaacagtgc cggggaatca
     3181 taccgccgta ttcgtaacac agcccgtttc ttattggcga acttgaacgg tttcgatcca
     3241 aaaagtgatt tagttcaacc gcaagagatg atcgccttag accgctgggc ggtggcttgt
     3301 gctttagagg ctcaaaacga catcaaagaa gcctatgata actaccaatt ccacacggta
     3361 gtacagcgtt taatgcgttt ctgctcgatt gaaatggggt ctttctactt agatattatc
     3421 aaagaccgcc aatacaccac caaagccgac agccttgccc gccgtagctg ccaaacagcg
     3481 ttatggcata ttgcagaagc gttagtacgt tggattgcac cgattttatc cttcacagcc
     3541 gatgaaattt ggggctactt accgcaggtg gaaggcagaa gtgaatttgt ctttaccgaa
     3601 gaattctaca ccggattatt cggtttaacc gagcaagata aattagatga tgcttactgg
     3661 caacaaatct taaaagtgcg tgcggaagtc aaccgtgtgc tggaacaagc ccgtaaagac
     3721 aaagtaattg gtgctggctt agaagccaag gtgacggtat tcgccaatga tgaaattcgc
     3781 ccgttattag aacaacttgg caatgaatta cgctttgtgc tgattacctc acaagcgatt
     3841 gttaaaccac tggcggaagc agatattgcg gaaggcgaat tagccggact cgcagtaaaa
     3901 gtggaaaatg cagatggtga gaaatgccct cgttgctggc attatgctac cgacatcggc
     3961 tcgcactctg gccacgaaga agtttgcgga cgttgtgtgg aaaacgtagc cggcgaaggc
     4021 gaaaaacgct tgtttgctta aaatgtaatt caattcatct ttctaaggca gaggaaactc
     4081 tgccttagct tttccagcga tagatagaca ctcagtttaa aatttgcaaa aattttcgga
     4141 aaaataaccg cttgtattga tgtaaatgat gaaaataatc gcttttcttt ttatttttct
     4201 ctccgttttt tctcacactg ctttggctaa ttctatggct gaacaatgtg tcgcgttaaa
     4261 atctaactcg ccggaaaaaa cggctattta taaagctgaa tgggttgaga aatctgctga
     4321 gttgccggct tactgtttag tacaaggtga aattggaaaa cgggtggagg tggataatgt
     4381 tccttacggt attcaatttg agctacgttt acccgaacaa tggaatgaaa aattcttatt
     4441 tcagggggcg ggcggtgtag gtggggtgat tttccctgcc attggtaagc tctatccgca
     4501 cggggcgagt ggtgcaaatg gcttaaacag aggctatgca gtagtgagta acgacagtgg
     4561 tcacgccact cgagatttag tgtttaccgc agatcccgaa gctcgctcaa attatgccta
     4621 tgcctctatc ggcaaagtga ccacggttgc caagcagttg attgccgaat tttaccgaaa
     4681 accgagcaag cacaattaca ttatgggctg ctcgaatggt ggtcgtgagg cgatgatggc
     4741 ggcaatgcgt tatccacagg aatttgacgg tgtgattgca ggcagccccg gctttcgggt
     4801 ttcccgttca gtcttggcgg aagtatggga taatcgagcc ttgttggcag ttgctccgaa
     4861 gaatggtgat ggcgacaaaa ttttatccca agccctcact caacaagatt tagatgtgat
     4921 tgccaatggc gtattaacac gttgcgataa gttagacggc ttagcagacg gtttaattaa
     4981 tgcgtgggaa cagtgtgatt tccagccgga aatggtggca aagcaactgg ggcagaaaaa
     5041 agtcgcttta atcaaaacga ttttcgaggg ggcgaaaaac agtcgaggcg agctgattta
     5101 tagcccttgg gcgtatgatt ccggcattaa cgctaaaggc tggcgggatt ggaaattagg
     5161 tgatagccaa accgctcagc ccaacagcat tagttttaaa atgggattga aaagtttgac
     5221 ccattactat ttagccccca gagtgccgag ccgtgatcca ctcagcgtag atttggatca
     5281 agccagcgaa caagtgaaag cggtagggag cattcacgat acagatcaag ttgatttatc
     5341 cgcttttaag cagaacggtg gcaaaatgct gatttatcaa ggcgtttcag acccgatttt
     5401 ttcggcagtt gatctcaaaa attggtatca aagcctacaa caagcggtcg aaaatccgca
     5461 acattttgca aaattgtttt tcgtgtcggc aatgaaccat tgtgggcgag gggcaacggt
     5521 gaatgatttt gatatgctca ctgcccttga aaattgggtt gagaaaggac tggagccgga
     5581 aagtattgcc gccaaagccg gtgagcttta ccctaataaa gccaagcaga tcccgctttg
     5641 tgcttatccg aaagtcgcaa tttatcaaac cggagaagat cctaatcgtt tgaccagcta
     5701 tcaatgccgt taagcgaaaa tcgctttatt ggcgatttca gtgtaaaata gcaggcaacg
     5761 attgaaaatt ttggaatcaa tgatgttaat tttgaacaaa caacgtaaag ctgaatacct
     5821 attgaaaagc ctgccatact taccacaagt ggcagagcag gttcagtttc tcgcctcgag
     5881 caaagcgttt aaacaacaaa ttttacagct gattcaaacg gcaaaaaagc gtatttatat
     5941 aaccgctctt tactttgaaa aagatgaagc cgggcaggaa gtattagctg ctttatatca
     6001 agcgaagcga aataatcctg aactggaaat taacattttg gttgattggc accgagccca
     6061 acgtgggcgt attggtgagg cagagaattt atctaacgcc gactggtatg caaaagttaa
     6121 atacgaacaa ggtttaccgg cagggcaaga gattgccttt tacggtgtgt cgattaacgg
     6181 acgagaagtg tttggtgtat tgcatttgaa aggcttcgta tttgacgata cgattttgta
     6241 tagcggagca agcattaata atgtgtattt gcatcaattt gaacgttacc gttatgaccg
     6301 ttaccacgtc attgaaaata aagttcttgc cgatagctgg gtgacgttta ttcaacagca
     6361 tcttttaacc aatgaagcgg taaaacgttt agatacggaa aatcgcccga aaacggctga
     6421 aattcgtgcg caaattaagc atttccgcaa acaattaagt cgggaagcgt atttatttaa
     6481 cggtgttgct gaaaatggtc gcttagcggt ttctccttta gtaggcttag ggcgacgtaa
     6541 gaatcagtta aataaagtga ttgaagcgtt gttttatcaa actgagcaga aattaacgat
     6601 ttgcactccg tattttaatt ttccgcattc tctgagaacc cgtattgaat ggctattggc
     6661 aaacggcaaa tcggttgaaa ttattgtggg ggataaaacc gctaatgatt tctacaccaa
     6721 gccggacgaa aaattcacga tggcatcggc tctgccttat ttgtatgaaa agaacttacg
     6781 agcctttgca aaacggttgg acggttatgt acaaaataaa cagttaacca ttcgcttatg
     6841 gaaagatggc gaaaacagct accacttaaa aggggtttgg gtggataacc gctatatttt
     6901 gctgaccggc aataacctta acccaagagc gtggcggtta gatgccgaaa atgcaatttt
     6961 aatttccgat cctcaacatc aattaagtga aaaagcagaa acggagttaa accaaatttg
     7021 ccaacatacg cagattttaa ctcactacag tgatttggaa gttttaaccg attaccctga
     7081 aaatgtgcgt aaattgctga aaaaattcgg cagggttaag ttggataaaa ttgtgaagat
     7141 gttgctttag ttaggtattt atatgggcga gctgatgggt tcgcccaatt attaaggata
     7201 aaatatgagc gaacaaattt atggcattca cgcagtgaaa gcctttttgg ataatgcacc
     7261 tgagcgttta attgaagtgc tggtgctaaa agggcgtgaa gataaacgct taatgccact
     7321 attaaatgaa ttacaacgtt taggggtggc aattcaacaa gtgaaccgcc aaaccttaga
     7381 taacaaatcg caaggtgaag tgcatcaagg gattattgcc agagtcgtgc cacaaaaaga
     7441 gctgaatgaa cacgatttag aggcgatctt aagccaaaag aaaaatccac tcttgttgat
     7501 tttagatggc gtgaccgacc ctcacaacct aggggcttgt ttgcgtaccg ctgatgcggc
     7561 aggggttgat gcggttattg tgccgaaaga taaatctgct cagcttacac caaccgctcg
     7621 caaagtcgcc tgtggggcag cggaagtgat gccactgatt cgagttacca atctggctcg
     7681 cacaatgcga gatttacaag aacggcataa tgtctggatt gtcggcacgg caggtgaggc
     7741 ggaatcgggc atttatgaag caaaattaac cggctcgatt gcgttagtta tgggggcaga
     7801 aggcgacgga atgcgtcgcc ttacccgtga gcattgcgac cagcttatca gcattccaat
     7861 ggcgggctca gtatcttctt tgaatgtctc agttgcaacc ggggtctgtc tgtttgaaat
     7921 tgtacggcag aagctggctg ggcaataagg aataagtaag aaaaatgcga agaactgatg
     7981 tcttcgcatt tttgttttta gagccgcaaa aaatctcaga aattgaaccg cttgttagcc
     8041 cacatactct tccaaattaa tcactttatc gcacgatttc tcaattagat aaggatcgtg
     8101 actgaccaaa atcagactgc aatttctcgc tcggcactgg ttgatcagca attctatcgt
     8161 ttcttgttgt gtgattgggt caagccgaga agtgacttca tcggcaaaca gtagtaccgg
     8221 ttctaagagc aaggctcgca aaattgctac tcgttgtagc tcgccgccgg agacattttc
     8281 cgcattgcgt tgcaaaattt ctgggttgag cgaaagttgt tgcagtaaac ttggaatcgg
     8341 cagtcgatct aattggtgct tgttaatcac atcatcaagc aaggttttta gactgacatt
     8401 cggagcaaag gcttccggtg ggtcttggta aagcttcaac acttggtgtt ttttatggct
     8461 gtggctgtgc cacacaacct cgcccgattt cggcttaagc aaaccacaaa gtacatcggc
     8521 aagcgagctt ttgccaatcc cactatgccc gacaatccca agcacttcgc ctttgtgtaa
     8581 gtcaaaggaa aggttgctaa acagcgtttt cttaccacgg gcaatactca aatttttaac
     8641 cgaaacaagc ggttgttttt ggcttaaatt ttgcagatct tgcaatggtt gccaatgttt
     8701 tggatcggca ctgataagtg ctttggtgta agggtgttgt gggttattta acaacgcttt
     8761 tgcctcacct tgctccaaca gttcgccttt tttcatcact aaaatagtgc caccgagttg
     8821 ctcggcaact tcaatatcgt gagtaatggt gagcaagcct ccaccgtttt ggtaggcgga
     8881 ttttaacagt tcaatcactt tgcctttact gattgggtca agccctttgg tcggctcatc
     8941 ggcaagtaaa attttgccac cggcggcagt tgcaatcgca aaagaggcac gttgagccat
     9001 tccaccggaa agctggtgtg ggtagttttc aaccgattcg cccagcccaa gtttggctaa
     9061 ataggctttg ctttccgttt tggcttgaga tgatggtttg cctgccacat agtgaaaact
     9121 ttcccacaac tgcttgccga ttgccataat cggattaagc gagcggcgag gctcttgtgg
     9181 cagcattacc aaggttttac cccacaatgt ttgcaagcgg tcggattcgg tggaaatttt
     9241 gcaatttttt accgaaattt caccgcttgc gattaagccg tcgggtaacg cccccataat
     9301 cgcttgaatc agcaggcttt tgcctgagcc ggtttcgcct aagatagtaa tattttttcc
     9361 tgcctttaat tgtaggctaa tcggttcgac cagctgtaat ctgttttcgg tttcaacaga
     9421 taggttttgg atatcgagta atttcatctt cattttatta ctgtaggggc gggccctgtg
     9481 cccgcccata aatataataa gaattttggg caggcacagg acctgcccct acgcattatt
     9541 taatttttct agacaataat tgtaagctga gtaccattaa gaaaacggca accactggtt
     9601 gcaaaaatat cagcggtgct tcgtagtagt aagggaatag ttcggtcatc atcaagccta
     9661 attctgctgt aggcgggcga agccctacgc tgacaaagcc aagtgtggcg agagctaaaa
     9721 tcgcattgcc gagcgagaat gccgataaag tggcaatcat cggtaataaa cggggcaata
     9781 agtggcgttt gaagctataa aaccagccca ttcccattag gcgtgaggct tgaatttccg
     9841 agctgtttgc cattgttgaa ctgatagagc ggatcacacg gaaaaattcc acccacatta
     9901 ccaatgaaat ccctaaatag agcgtccaaa atgagccggg agaaagggcg gcaaagagca
     9961 atactaaaag taagccgggg agtgccatca ctagatcaca aataaagctg aaaatgcggt
    10021 caatccagcc accgaaaaag cctgccataa tgccggtaat taagcctgca attaaggcac
    10081 aaatcacgct aaacagtgat aagccaaacg aaagacgaat agcagaggca agacgggcaa
    10141 gcatatcccg cccgagatga tcggtgccga accaagcgat ttcatttgga ttggaaagga
    10201 tattggttaa atcttgaaag ccaatatcca tcgggtaaaa ataaggctgt aaaaaggcaa
    10261 atcccaacat tgcaaggaga atagtgccgc ctaaatattg tgaaattgaa attttcatct
    10321 tgatgtccta tcgcttaatt cgtgggtcaa tccaagcact taatagatcg gcaatggtgt
    10381 ttaatacaac aaacaatccg cccatcacga gcgttgtacc ttgaatcatc ggcacatcac
    10441 gggcaatgat ggcgtgaacc agtgcgtgtc cgctgccggg ccaagcaaat aggctttcga
    10501 ccaccacaac gccttcaatt aaataaacta attgtactgc gtggtaggca atgaccggca
    10561 cggcaatatt cggcaaaccg tgacgtaaaa aggtatgcca acggcttaag ccttttaatt
    10621 gtgaaaattg gtaaaattct gagcctttta cctgaaccat tgcagaacgg gtgactcgta
    10681 ccgaaaccgt actcaagcca atcgcaagcg ttaaggcagg caagataaaa tgttgccaac
    10741 agccgtatcc gccggcaggt agccatttta gttgagcgga aaacagcgta atcaagccaa
    10801 tcgcaataat aaatgccggc acggagcgaa acagggtact gaataccagt gtcaagcggt
    10861 caaaaaagcc gtttggctta cgggcggcta acaaaccgag cggaggcccg ataaggattg
    10921 ctaagataag tgccacaatc gcaaggctta aggtatgccc gaattggtgc tgaatttcag
    10981 accagaccgg atcaccggtc accaatgatt tgcctaaatt aaattgagcc aagtcactta
    11041 gccagctgaa gtagctttgc caccaaggtt ggtctaatcc cagctcggca cgcacagcct
    11101 cagcagcagc actatctgct tgatcataac catagcggct ggcagcaatg cggtatgcca
    11161 tatcacccga aagttggcgg gtgaggataa atgtgagtgt gccaaccgac caaatcacca
    11221 gtagaatttg gataagacgg cggaagagaa ttttgtgcat tgtattattt catttattaa
    11281 aaagatgatt ttatgcgttc tgatccccct ctttagcaaa gaggggaagg gaagatttgg
    11341 cagaagaaat aagcggagaa aataggtgaa aaatgagaaa aaacgataat tctgtcacta
    11401 tttattcacc taagagcgca aattactact gaaaaatcct accttccctt ttctaaagcg
    11461 aggagtattt tgaattaaac tacttactta ataactccaa aaagaagcgt ctttcaaatg
    11521 gatctagcgt cacatttttt acttctttat gtgccaccac attttgttgg taataaacca
    11581 ccggaatgat tggcaaatca ttgtaaataa ttttgctaac cgtttgcttt aatgctttcg
    11641 ctttttgcgg gtcacgctcg gtttcgagcg atttgactgc attgtctacc tcagtatttt
    11701 gccaattcat taccccccaa tcactgccac cattggcgaa gtcggaggca attacgccat
    11761 atggatctaa ggttttgcca taatttaagg cataaagagc catttctaaa ctgccgtctt
    11821 gatgccccgc cggaatttcg ctgaaattac ccaccgaaac attcacttcc acgccaattt
    11881 gtttccattg agcttgtaag atagtagcaa tcaccggtaa ttcaggacga tctgagaagg
    11941 tgcgcatggt aaagctaaac ggtttgccgt ctttggttaa gcgaccttgt tcatcaaagg
    12001 tatagccgga agcggtcaga ttttgtttaa tttttgcaat atcgaccact tgttctgcgg
    12061 tatcaacacg ccagtcggca aaggctttcg gtaaaatttg atcggcagct ccgttctcaa
    12121 tttttaagac ctgctcagca atcgccttgc gattaatcgc ttgcgataag gcttggcgaa
    12181 tcgctaagtc gttaaaaaac ggctttgcca cgtccatttt caactgaata gtacgggcaa
    12241 tagatccgct gactaattgc aggttaggat cggctttcag ccttgctaca ctggcggtat
    12301 ctaaattaaa taccagtgat gacggctcgc tttgtgccat taacatacgg gtttcgctac
    12361 ggctgctggc taaataattg gcttgctgaa cttgcggttt tttgccccaa tagccctcaa
    12421 attgcaccgc ttccaatttc tgcggagctt caatttttgt gggtttaaac gcacctgtac
    12481 cgataatttg ggtcacttcg cctttttcat tatagctttc aggtgccaaa attaaggcgg
    12541 tgtagtgtgt taaaaaggga ggaaacggca caaaagcttt agttagctca atttccactt
    12601 tgttatctac cgctcgaatt tccttgataa aggcttttgc taacacaccc ggtttgcttt
    12661 ttgcgatatt caaactattt accactgctt gtgcggtaag tacttgatcg ttatggaatt
    12721 ttaccccttc acgcaaggta aaacgccaga ttgttccctc ttcgttactg cgccagtcag
    12781 tggccaatgc cggaattaaa ttcccgttaa gatcggcttc gaccaatgtt tccgctaagt
    12841 tcatacgctg gaaaattacg cctgattgat tcgggtcaag gctattgatt tcccatgggg
    12901 caaccacggt tgcaagcggt aatatttccg catttttttg cgattgagta ttctctactt
    12961 gcggtttttc tgcggttgct tgagtgctgt tcttatcatc gcaagcagaa acacagaacg
    13021 ctgcgacagt taatggaatc aaccattttt tcattttatt ttctccataa aaaaatcagg
    13081 gctatgaata ttggcgaact ttagcatatt tccataaaaa aagtagagtt ttctgcgagg
    13141 gtatttttga gtggttaatt aataggcaga ataatctcaa gataaggatt gttgataggg
    13201 gaatatttag gctatttgag gaacagaatg cctagtattg taaaattcgg aaaaaaaatt
    13261 gaccgcttgt gctttatttg taggggcgaa agatttttcg cccctattgg ttttagtgct
    13321 ctctcgtttt aaagaactgt acgtcagggt aacgttcttg ggcgaggttt aagttcacca
    13381 ttgtcggagc aatgtaggtg aggttgtctc cgccgtctag ggcaaggttt gcctcgtttt
    13441 tgcgtttgaa ctcttcaaat tttttggcat ctttgccttc gacccaacgg gctgtggcaa
    13501 cgtttacggt ttcataaatt gcctctacac cgtattcggt tttcagccgt gaaaccacca
    13561 catcaaactg tagcacccca accgctccca cgatcaaatc gttgttgatt aacggacgga
    13621 atacttgcac cgcaccctct tcggaaagtt gtaccaagcc tttgagcagt tgtttctgtt
    13681 tgagcggatc acgcaggcgg attcggcgga acagctcagg ggcgaagttc ggaataccgg
    13741 tgaatttgaa attttcgcct tgggtgaaag tatcaccaat ttggatcgtg ccgtgattgt
    13801 gcaagccgat aatatcgccg gcgtaggctt cttcggcttg tgaacggtcg cccgccataa
    13861 aggttaaggc atcggagatc accacatctt tgccgatacg gacgtgttta agcttcattc
    13921 ctttttcata tttacctgaa acgacacgca taaaagcaac tcgatctcgg tgtttcggat
    13981 ccatattcgc ttgaatttta aatacgaaac cgctgaattt ttcctcgctt ggtgaaactt
    14041 cacgttcgtc cgattgacgg gcttgtggtg ccggtgccca ttcggttaaa ccgtcaagga
    14101 aatgattgac cccgaagtta cccagtgcag tgccaaagaa aaccggtgtc agctcgcctt
    14161 tgataaattc ggtgtgatcg aattcgtgcg aagcgccttg taccagctct aattcatcac
    14221 gcaactgctg ggctaaatca tcgccaacgg cttgatccag ttccggatta tttaagcctt
    14281 taaccactcg tacttcttga atggtatgac cttgtccggt ttggtataag taggtttcgt
    14341 ccttgtaaag gtgatatacc cctttaaaca attttccgca accaatcggc caagtgatcg
    14401 gcgcacattt gattttcagc acgctttcca cttcatctaa cagctccatc gggtcacgaa
    14461 tatcacggtc tagcttgttc ataaaggtta ggattggcgt atcacgcaag cgggtcactt
    14521 ccattaattt aatggtgcgt tcctcaaccc cttttgccga gtcgataacc attaagcagc
    14581 tatctaccgc agtcaaagta cgataagtat cttccgagaa gtcttcgtgc cccggtgtat
    14641 cgagtaagtt taccaagcaa tcattgtacg ggaactgcat cacggaggtg gtaatcgaaa
    14701 ttccacgttg tttttccatc tccatccagt cggatttagc gtgttgtgcc gagcctttgc
    14761 cttttaccga gccggcagtt tggattgcat ttccgtagag caatactttt tcggtaatgg
    14821 tggttttacc cgcatcgggg tgggaaataa tcgcaaaggt gcgacgttta ttaacttctt
    14881 gtgggtatga catttttctc aaccaattaa aataaaaagg gcggaaagtc cgccaaaaaa
    14941 ttaagcgtta ttttcgctga tttgaggcga gagggcaagc ggttaaattt ggcggaaatt
    15001 ttgcaaaatc ggctagattt gcaaaaattt tgtaaaaatc gaccgcttgc tttggcacaa
    15061 ttttggaaac agggtagaat aaccagcttt gactttatta tcgatgaatc tattatgatg
    15121 aaaaaattta ttcctgttat gattgcggct ctggtgttaa gcgcctgttc ctcccagccg
    15181 gcaaaaagga aaagcacacc acggattaaa gcaaccgctg cttatattcc aaccgaaaat
    15241 tccgcttatg tggtgtttga cttaaaccaa aagaaatttt tggaaggtaa gaatttcaat
    15301 ttagttcgcc cgattgcttc ggtcacaaaa ttaatgacag cagtcgtttt cttagaagaa
    15361 aaccgctatg gggcgagttg ccaaacccaa attttgccgt cagatgctga tttcttaaaa
    15421 ggcacgacca gcccattgcc gaaaaatctt aacattgcct gtagtgaatt gttaaaagcg
    15481 atgctagttc gctccgataa ctatgccgct cacgcccttg cccacgcaac acatttgaat
    15541 aaagcccaat ttttggctcg aatgaacagc aaagcccgtg aaatcggtat gactcaaacc
    15601 tactttggtg atagctcagg cttatcttcg gataatgttt caacggtggt tgatcttgct
    15661 aaattggcag gctatgcggc aagtaagcct gaaattcagc aattgtctaa ttcgccatta
    15721 gtgagtgttt atgcaggtgg tcgttatttc tctatgaaaa acaccaacag tatggttcgt
    15781 tcccaatcct atcaggcatt agtgagtaag acaggttata cccgtgaggc gggttataat
    15841 cttgccttta ttgctaaagg ggattgcaga ggcaagcgaa ttggtgtggt tagtttaaac
    15901 aatgataacg ctgcttcacg caccgatttc actgaatcga tgttagcgaa gtatcaatgc
    15961 gtaccaaatc cgtatagaca atatgattaa tggttgcctt gagaaaatag cggtttttct
    16021 ctaaaatact gccttttaaa ttaaatgaat tgagacaaga ttgtgtcaga aattaaatta
    16081 attgtcgggc tggcgaaccc gggggtaaaa tatgaagaaa cccgccataa tgcaggcgag
    16141 tggctgatta acgaacttgc ccgaatatat aacgttagcc taaaagaaga gccgaaatat
    16201 tttggcaaag tagcaaaaat taataccgct caaggcgaag tccgtttatt agtgccgact
    16261 acttttatga atttaagtgg taaagcagtg ggagcgttag ccaattttta tcggattaaa
    16321 ccggaagaaa ttttggtcgc tcacgatgaa ttggatttac cacccggttc ggtgaaattg
    16381 aaaaaaggcg gcggacacgg tggtcataac ggcttgaaag atattattgc cgcccttggc
    16441 aataataaag agttttaccg tgtgcgaatt ggtattggac acccggggca taaagactta
    16501 gtggcgaatt atgtgctggg caagccttca ccaagcgatc agacattact gaatagtgcg
    16561 gttgatgaag ccgcacgttg cgtagaagtt ttatttaaag acggaatggt taaggcaact
    16621 aaccgtttaa atagttttaa agcaaattaa aactctctcc cttgtgggag agagaccgaa
    16681 aaatacttcg ttcagaagta tttttcagag agaggggagc ggtcatattt gaggaaatta
    16741 ttgcaatttc gccctctccc tcattttcgc ttctgaacga agctcaaatt tatccctctc
    16801 ccgcaagggg agaggggaat tctaaggaac aaaaaatggg atttaaatgt ggtattgtgg
    16861 gtttaccaaa tgtcggtaaa tcgacccttt tcaatgcatt aactaaagca ggtattgagg
    16921 cagcaaacta tccgttctgt acgattgagc caaataccgg tgtggtacca atgcctgacc
    16981 ctcgcttaga tgcgttggcg gaaattgtga aacctgagcg agtgttacca actacaatgg
    17041 aatttgtgga tattgccggc ttagtggcag gtgcaagcaa aggcgaaggt ttaggtaata
    17101 aattcttagc caatattcgt gaaactgatg cgattggcca cgttgtgcgt tgttttgaaa
    17161 atgatgacat cgttcacgtt gcggggaaaa ttgacccagc tgatgatatt gaaatcatca
    17221 ataccgaatt ggcacttgcc gatttagaca gttgcgagcg tgccattcag cgtttacaaa
    17281 aacgtgcgaa aggtggcgat aaagacgcaa aatttgaatt atcgattatg gaaaaaatcc
    17341 tacctgtgct tgaaaatgcc ggtatgattc gttcggtaga tttagataag gatgaactgc
    17401 acgctattaa gggctacaac ttcttaactt taaaaccgac aatgtatatt gccaacgtga
    17461 acgaagacgg ttttgaaaat aacccttatc ttgaccgtgt gcgtgaaatt gccgaaaaag
    17521 aaggggcggt ggttgtaccg gtgtgtgcag cgattgaatc ggaaattgcc gagcttgatg
    17581 acgaagaaaa agtggaattt ctacaagatt taggcattga agagccgggc ttaaaccgtg
    17641 ttattcgtgc aggctaccgt ttacttaact tacaaaccta ctttaccgca ggggtaaaag
    17701 aagtgcgtgc gtggacggtt tcggtaggtg caaccgctcc aaaagcagca gccgtgattc
    17761 acactgactt tgagaaaggc tttattcgtg cggaagtaat tgcttaccaa gacttcatag
    17821 acaataaagg tgaagccggt gcaaaagaag cgggtaaatg gcgtttggaa ggtaaagatt
    17881 atattgttca agacggcgat gtaatgcact tccgtttcaa tgtttaattt gcaaattttt
    17941 gcctaaaaaa gaccgcttgt tgatctgtga tctacaagcg gccttttttt gttaattaat
    18001 tgcatattgc tcgattcggt aaaaatgtct taa
//
LOCUS       DANLXB010000031        17905 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLXB010000031 DANLXB010000000
VERSION     DANLXB010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17905
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            63..1154
                     /gene="ulaG"
                     /locus_tag="PXD41_000683"
     CDS             63..1154
                     /gene="ulaG"
                     /locus_tag="PXD41_000683"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL6288241.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1238..1984
                     /gene="ulaR"
                     /locus_tag="PXD41_000684"
     CDS             1238..1984
                     /gene="ulaR"
                     /locus_tag="PXD41_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL6288242.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2039..2899
                     /locus_tag="PXD41_000685"
     CDS             2039..2899
                     /locus_tag="PXD41_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL6288243.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2896..3615
                     /locus_tag="PXD41_000686"
     CDS             2896..3615
                     /locus_tag="PXD41_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL6288244.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3836..6313
                     /locus_tag="PXD41_000687"
     CDS             3836..6313
                     /locus_tag="PXD41_000687"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6288245.1"
                     /translation="MYLLEGNQKVKNRNYFVAIATILALSPEVNATELSDQLASRTRY
                     YPSATDSYYSYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTK
                     VYTTHNGRTTVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIV
                     DNKPITDTQPNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWND
                     RSRGYNIDDPNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTA
                     PASATHGIEVAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRG
                     ARIFNQSYGIPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRG
                     DLDPSLQAGLPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVT
                     AMGDYIFNLGGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGA
                     PGVDDVYGWGLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKN
                     GQGELILSGASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEG
                     TVVNQGYSTIKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQ
                     KGLSMSAITSDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSA
                     LDNQIEGNNGSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFEN
                     SETVNKDLSNRLVMLGTLDNVGETAGV"
     gene            6323..7138
                     /locus_tag="PXD41_000688"
     CDS             6323..7138
                     /locus_tag="PXD41_000688"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6288246.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALTEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7225..8085)
                     /gene="pdxY"
                     /locus_tag="PXD41_000689"
     CDS             complement(7225..8085)
                     /gene="pdxY"
                     /locus_tag="PXD41_000689"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL6288247.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8204..8279
                     /locus_tag="PXD41_000690"
     tRNA            8204..8279
                     /locus_tag="PXD41_000690"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8237..8239,aa:Thr,seq:tgt)
     gene            complement(8374..9327)
                     /gene="accA"
                     /locus_tag="PXD41_000691"
     CDS             complement(8374..9327)
                     /gene="accA"
                     /locus_tag="PXD41_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL6288248.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9381..10805)
                     /locus_tag="PXD41_000692"
     CDS             complement(9381..10805)
                     /locus_tag="PXD41_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL6288249.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10807..11541)
                     /locus_tag="PXD41_000693"
     CDS             complement(10807..11541)
                     /locus_tag="PXD41_000693"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL6288250.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11688..12185
                     /gene="tpx"
                     /locus_tag="PXD41_000694"
     CDS             11688..12185
                     /gene="tpx"
                     /locus_tag="PXD41_000694"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL6288251.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12270..13895)
                     /gene="yidC"
                     /locus_tag="PXD41_000695"
     CDS             complement(12270..13895)
                     /gene="yidC"
                     /locus_tag="PXD41_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL6288252.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14048..14473)
                     /locus_tag="PXD41_000696"
     CDS             complement(14048..14473)
                     /locus_tag="PXD41_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL6288253.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14802..17894)
                     /locus_tag="PXD41_000697"
     CDS             complement(14802..17894)
                     /locus_tag="PXD41_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL6288254.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5095 a         3631 c         3922 g         5257 t
ORIGIN      
        1 tgattgttta tgattggttt tgattgcatt gttcttattt tagcgtaaat caggagacta
       61 ttatgagcaa aattcaagaa atcactcgtg aaagctggat cctttcaact ttccctgaat
      121 ggggtacttg gttgaatgaa gaaattgaag aagaagttgt accggaaggc aattttgcaa
      181 tgtggtggct aggctgtgtc ggtgtgtgga ttaaaacccc agctggtgcg aatatctgta
      241 tggatttatg gtgcggtcgt ggtaaatcca ccaagaaagt aaaagatatg gtgcgtggtc
      301 atcaaatggc aaatatggca ggggtgcgta agctccagcc taatttgcgg gctcaaccga
      361 tggtgttaga tccgtttgcg attaacgaag tggacttcat tctcgcttct cactatcact
      421 cagaccatat tgatgtaaac gtggcagcgg ctatttgcaa taacccgaaa ttagaccacg
      481 ttaaatttgt cggcccttgg cactgtgcag aattatggaa aaaatggggc gtgccggaag
      541 aacgtattat tgtggtaaaa ccgggcgatg tcgtgaaatt aaaagatgta gaaattcacg
      601 ccctagattc atttgaccgt acctgtttag tgaccttacc ggtagaaggt gcagaagaac
      661 gtggcggaga acttgcaggc ttatgcccat cagatgaaga aatgggacgc aaagcggtga
      721 actatgtgtt caaaaccccg ggcggtacga tttatcacgg tgcagattct cactactcaa
      781 tccaattcgc taaacacggt aagcaatttg atattgacgt agcgctgaat aactatggcg
      841 aaaacccggt tggtattgcg gataaaatga cttcagttga tttattacgt atggcggagt
      901 gtttacgctg taaagtgatt attccggttc accatgatat ttggacaaac tttatggcaa
      961 gtacgcaaga aattattgat ttatggcgta tgcgtaaaga tcgcttacaa taccaattcc
     1021 acccatttat ttgggaagtg ggcggcaaat atgtttaccc acgtgataaa gacttaattg
     1081 aatatcatca ccctcgcggc tttgatgact gcttcgagca agagccaaat attcaattta
     1141 aatccatgct ataggtgagc agtcgccact ctcactggag agtggcgttt tagcaagttc
     1201 attatggagc agtagtgatt agtaatggga taaagtagtg aacgaaagtt atagacacaa
     1261 agagttatta gccctgttgg aagagcggaa agcactgtca acagcagata ttatgcagct
     1321 gttaaatatt tctccggcaa cagcaagacg tgatatcagt aaattagatg gtcaaggtaa
     1381 attaaaaaag gttagaaacg gagcagaagc aattctggct cctacatttt tacagcacac
     1441 aaaaataact aacaatgcgc aggagaaacg tagaatagcg gaagctgccg gtcgtttatg
     1501 taaagatggg gaaagtctta ttctgacgtg tggttccaca atggaaatgc tcggtgaagt
     1561 attatgtggt agaaaattgc aaattattac caattatcta ccgcttgcaa accagttgat
     1621 tgcaggttgc cacgatgatg tagtgattat gggtgggcaa tataataaac ataaaaaagt
     1681 gatgctctca attaacaccc aaaatgagat gacttatgcc gctaccacaa tgtttaccag
     1741 tggcaaaggc ttaaccagcg aaggattatt taaaaccgat atgattattg ccaatgccga
     1801 gcaacaaatg gcaaagcacg cagaacgtta tgtggtgtta ttggatagca ccaagctcgg
     1861 caaaaaagtc ggtatgctgt ttaaagagtt cgataaaatt gatttattga ttaccggcaa
     1921 agaggcggat ccgactatta tccaagcatt aagaaacaaa ggcctggata ttatcttggc
     1981 ttagcctgta gcggtcaaat ttaatcaaaa ttttacttat catcttcaag ggaaaactat
     2041 gagaaaacat aaactgggta tttacgaaaa ggccttgccg aaaaacattt cgtggcaaga
     2101 ccgcctttct atcgccaaag tctgcggttt tgactttgtg gaaatgtcga ttgacgaaac
     2161 ggacgaacgc ttagcccgcc ttgattggag caaaaaagaa cgtgccaagc tggtgaaaac
     2221 catcatcaac accggcgtga ccattccgtc aatgtgcttg tccggtcatc gccgtttccc
     2281 gtttggttct tgtgatgaag cgacccgcca aaaagcctat gaaattatgg aaaaagccat
     2341 tcaactggcg gtcgatctcg gtattcgcac cattcagctt gccggctatg acgtctatta
     2401 cgaagagcag gacgaaggca caatccaacg cttccaacaa ggcttagaat gggcggtgga
     2461 gctggcggca agcaaccaag ttaccattgc ggtggaaatt atggacaccc aatttatgag
     2521 ttcgatttcc cgctggaaaa aatgggacga gatcatcaaa tcaccgtggt tcaccgtgta
     2581 tccagattta ggcaacctct cagcgtggaa cgacaacgta gcggaagagc tgaaactcgg
     2641 catcgacaaa atctctgcca ttcacttaaa agacacttac aaagtgactg aaacctgcaa
     2701 agggcagttc cgtgatgtgc catttggtga cggttgcgta gatttcgccg cttgttttaa
     2761 aacccttgcc gagctgaatt accgtggcgc attcttaatt gaaatgtgga cggaaaaagc
     2821 cgaagagccg attactgaaa tcatcaacgc ccgccgttgg atcgaacaaa aaatgcaaga
     2881 aggaggattt accctatgac gcaattaact gaattaaccc ctgcattaca agccttaaga
     2941 gagcgtgtgt taaaagccaa tttagaatta ccgaagtatg gcttggtaac tttcacttgg
     3001 ggtaacgtaa gtgaaatcga ccgtgagacc ggtttagtcg ccatcaaacc ttccggcgta
     3061 gaatacgatg cgatgacggt ggaagacatt gtattggttg atttacaagg taatcgagtt
     3121 tacggagata aaaaaccgtc ttctgataca gaaacgcact tagaacttta tcgccaattc
     3181 actgatattg gcggtgtggt acacactcac tctcgcaatg ctgtaggttg ggcacaagca
     3241 gggcgtgatt tattggcact tggcaccact caaggcgatt atttctacgg tgcgattcct
     3301 tgtactcgca aaatgaccgc agaggaaatt gccggcagtt atgagctgga aaccggaaag
     3361 gtgattgtcg aaactttccg aactcgaggt attgaaccga aagcagttcc aggtgtgttg
     3421 gtacattcac acggtccatt tacctgggga aaagatggac acgatgctgt gcataattct
     3481 gtggtattag aagaggtggc ttacatgaat tttattagcc atcaaattcg cccacaaatt
     3541 ggcccaatgc aacaggaatt attagataag cattatctgc gtaagcatgg tgcaaatgct
     3601 tattatgggc aatagctaat aacctaaaaa ttattttcca aattatcaac agctttcgag
     3661 gggctttcta taatcggaat agctcctcag tctgtttgag tttatggata gatccacaaa
     3721 taattaccat tttccttttc ttgattttaa ttttgatttt tgttctaatc tctgcctctt
     3781 gtttttacaa gtctattaag gatccgtagt agatttgaaa taaacaagag tatctttgta
     3841 tttattagaa ggaaaccaaa aggtgaaaaa tagaaattat tttgttgcaa tagcaacaat
     3901 attagcctta tcgccagagg ttaacgcaac tgaactttca gatcagcttg caagtagaac
     3961 aagatattat ccttccgcca cggatagtta ttatagttac tataaatatg caccgattta
     4021 ttcgggctac tatacatcga atagccgtaa tggttattcg tcgtggtatt atccaggtag
     4081 caatgcaggt gtaacaacca gaactgtttc gacaacagtt aatggcatta cagttacaaa
     4141 agtttataca acgcataatg ggagaacaac cgttcgtacc acttatgctc ctgctgtgaa
     4201 caaaccaatt gtaaataaac cgacaccgat tgccaataaa cccgttgtag atacgccaac
     4261 tcaaccggtt attgatgcca acccaattat ggatccgcca gtccaaccaa tagttgataa
     4321 taaacccatc actgatacac agcctaatcc aattacagat aacaaacctg tcattgaatc
     4381 gccaattgat gacacccgtc cagttatcat taggcctaca acaccggtaa atcttcatcc
     4441 tgaacctgta gctgttggtg tacccaatgt aggtattcga tggaatgacc gctctcgtgg
     4501 ttacaacatt gatgatccta ataacaaaca aaatgttaag ttaactggtg aaggtgttaa
     4561 agtcggtatc ttagatagtg gttttaaaaa ctatttaatg caggacgata tactcaaaaa
     4621 atttggtaat cgcgctgtta ttattgaaac agggcgtact gccccggctt ctgcaacaca
     4681 tggtattgag gtcgcagaaa tggttggggg agggaactct cgcaatggag tagcgtctaa
     4741 gtcaacgtta ttacttgcgg atattaccaa aacaacaaat gcgggtacag gattatccgc
     4801 aacagctcca atttattatg acttatggaa taggggagcc cgtattttta accaatcata
     4861 cggtattcca aagcctctta cttattttaa taacaataga aattctagct attactattt
     4921 acaccaattt gatggtaatg tgttgcaatt ctataaggat aaagtaaaag aggggggctt
     4981 atttgtctgg gctgcgggga ataaccgtgg tgatcttgat ccatcactcc aagctgggtt
     5041 acctcattat gaagctgact tggaaaaagg ttggatttct gttgttgcgg tagcaaccag
     5101 aactaatcag ggattgggta actttgaatg gagcaattta ttgccatatt ctcaagccgg
     5161 tgtggcaaaa aattggaccg ttaccgcaat gggtgactac atctttaatt taggaggtag
     5221 aaacattatt gctagtggtt catcctttgc agctccagcc gttacgggta cagcagctct
     5281 cgtgaaacaa aaatatcctt ggatggatgg taaccttatc aaacaatcta ttctctcgac
     5341 ggcaaccgat atcggcgctc ctggagttga tgatgtatat ggatggggtt tacttaatat
     5401 tgaaaaagcc actaatggcc ctgcgcgttt tggtaaacga ctcgctttag ccgataacgt
     5461 gactgtaaat attccaaatg gaagctatga gttttccaat aatattaacg gtgatgcagg
     5521 cttggtgaaa aatggccaag gcgaattaat tttatcgggt gctagtactt ttgaagggga
     5581 tacaacactc aatgaaggtg ctgtcactat taacggtaaa aaatatgtgt ctaaagtaaa
     5641 cgtatctcca agtggtacat tggttgtcaa taataccacg ttagaaaatg gcgtaaataa
     5701 cgagggtaca gttgtcaacc agggttattc tacgattaag agagcttacg ttgcttcagc
     5761 acaaagtacg ctagtgtcag atttaggttc aaacttaaat gtaaaaggag aagttgactt
     5821 aaacggctct actttatcac tagctgcggt aaaagagggt aaagctcagt atgtgaccca
     5881 aaaaggttta tcaatgagtg ctattacttc tgattccgca attaagggta actttgctgc
     5941 aatagaaacc tcagggttat taactgcgac ggcggaaaaa accaatgaga atgaagtaaa
     6001 agcaacagtt agccggaaaa atgtcgcgac tgctttagag agctcatttt cggcattgga
     6061 taaccaaatt gaaggaaata atggttctac aaatgctaca aatgatgaat tcgcacaaca
     6121 agcggctact ttacaaaaca gtattgcaaa catcaatacg caaagtgtgg ttttagatag
     6181 cttatctggt caaatttatg cgtctgcgca agcgcttact tttgaaaact cagaaacagt
     6241 gaataaagat ctctctaacc gtcttgtaat gttaggaacg ctggataatg taggtgagac
     6301 tgctggtgtg tgagtaacgg gtatttatgg gaatggtact ctaaaagaaa tagggtttgg
     6361 tgaaggtaaa accaatacct atgctggcca aataggtttt gataagccag ttacagacca
     6421 tgtgatttta ggtgcggcac ttaattattc taaagcaaaa gtgaacttcg atcgttatgg
     6481 cggtagttca aaagcagatg gaataggtgc atcattatat gcccgtatag gcaataagca
     6541 taaaacacct tggtatttac aaggtcgagc cggttatggc agtgttgatt cagatgtaga
     6601 gcgtcatatt attttggcgg ataataacgc aagtacagca aaaatcaacc accgagacag
     6661 agtattttct gcttatgttg aatcaggcta tgacttcaag caaggtcgct ttgcgttaac
     6721 tccatttgtc ggttttagtc atgatgttgt cagacgtggc gcattcagtg agcaaaacag
     6781 tcaatttggt ctcaccgcgg acaaagcaac ctataaacaa acaagcggat tgattggttt
     6841 acgaacatct ttagaggtga atttagctgg gatgaaaacg actttccaag gctatgtaaa
     6901 tcatcaaaaa gcgtttaatc gagaagatct tagctttaaa gcaagttata caggtttaca
     6961 agatgcaaaa ttcgacgtaa aaggtattgg gcttgcaaaa cataaaacgt gggtagggat
     7021 tggtgcattg acggaagtaa ataaaaatac ttccttatat gtgaattacg accttaaact
     7081 cgcaaaaaat agtggtcaca acaacgttgt gactgctggg attagaatta atttctaact
     7141 gaatcttttt aaacaaaacg ggcgtttata cgcccgtttt tttatagtta tagagataat
     7201 aatgttattt tatacttcat ttaattaggc aatctttaca gcttggtaac tacactgtgg
     7261 attaacaatc cgatcacgag aagcaataat ttgtaactca taaagccctg atctagcggt
     7321 ttgttccatt acctcattga ccgcatttgc agtgtgttca aaggcttcta gatcggattt
     7381 tccatttaat aagttcgcca caaatagccc tgcggttaaa tcgcctacac cgacaggttc
     7441 tttggcaaat tggtagagtg ggcggctgat gtgccaaatg ccatcttggt tggcgaacag
     7501 catttcaaat ttgttgctct ctttgccgac tcggcttaaa tgtttaacca atactttttt
     7561 cgggcctttg gttaaaatca ctttcactgc ctcgaccgct tgctcaaaat tttccaccgt
     7621 taaaccggtt aattctctta attccactaa atttggtgtg ataatgtcgg cttgtgccat
     7681 tgccagattg atcaatccct cttttacgcc gtctgccaca atgcagcctt tgtcggggtg
     7741 tcccattacc gggtcgcata cataaattgc gtttggattt tccgctttca ctttatgaaa
     7801 agcctgaata atttcggcta cttgttctgc cgagccgata tagccagaga gtacggcatc
     7861 gcaacgatgc agttcaccga tattgtgaat gccatcaaca atgctaccga tttgttcttt
     7921 tggcatcacc ataccgcccc attttccata ttgggtatgg ttggaaaact gtacggtatt
     7981 taacgcccat acatcaacac ctaacagctg cataggaaaa gttgaagcct tattgccggc
     8041 atagccgtag acaacgtgcg attgtatgga tagtatgttt ttcattcatt cactccttta
     8101 aaatttcaat atgtgttgtt ttttagtcat ttgaagttgc aaggacttga agctcatcaa
     8161 gaaatctcta taatcccgcc tcgttctctt atccattcaa tatgccgact tagctcagta
     8221 ggtagagcaa ctgacttgta atcagtaggt caccagttcg attccggtag tcggcaccat
     8281 cacctttatt ttctgatgag tcccctttaa tgtaaaatgg caagattttg caaattttca
     8341 caaaaatctt accgcttgta gggtgaaatt gaattagacg taaccgtaat tcattaagcg
     8401 ttgataacgg cgttccagta aatcctcttt attaagttga tctaaccctg ccaaatcttc
     8461 aacaatacgc tgtttaaggt tttgggcgat ttgttcaaca ttgcgatgag caccgcctaa
     8521 gggttccggc acgatgttat caatcagctc aagctctttt aaacgagggg cagttaaacc
     8581 cattacttct gctgccgttg aggctttatc ggcacttttc cacagaatcg aggcacagcc
     8641 ttcaggtgaa attaccgagt aagttgaata ttgcaacata ttgaccttat cgcccacacc
     8701 gatcgctaat gcaccgcccg agccaccttc gccaattacc gtacagatta ctggcacgga
     8761 aagttgagac atttcacgca ggttacgggc aatcgcttct gactgaccac gctcttccgc
     8821 accaatgccc ggataagctc ccggtgtgtc gataaaggtg atgattggca tattaaagcg
     8881 ttctgccatt tccattaaac gtaacgcttt gcgatagcct tcaggagcag gcataccaaa
     8941 gttacgtttc actttctctt ttacggtacg acctttctga tgaccgataa ccatcaccgg
     9001 acgtccgtcc agacgggcaa taccaccgac aatcgcttta tcatcggcaa aggcacggtc
     9061 gcctgccagt tcgtcaaatt cggtgaaaat atgctcaata taatctaaag tgtacgggcg
     9121 attggggtgg cgtgccatac gggaaatttg ccacgcatct aaattagcaa aggttttctt
     9181 ggttaattcc tcgcttttct tttgtaaacg cttgatttca tcatcaagat taattttgtc
     9241 atcttgctcg ctgactgctc ttaaagactc gatcttggct tccaattcag caatcggcaa
     9301 ttcaaaatct aaaaattctt ggctcattct attttccttt ttatgggcaa aattatgggg
     9361 cattatcgct tatcagtcgg ttattgtcca ttttcaatta cgctaaattg acccatcgta
     9421 cctctatcac gcagcataaa atcgctcacg ccaaaggtaa atggcagttg ctcaggggca
     9481 gtattatcaa agcgaaccaa cagcgtgatt tcttgctccg cctcgagcca aacggtgtcc
     9541 cgccacgcaa gttgtttgat agggtattgc ttgcggttta gggtttcaat aatgaatttt
     9601 gcaccttgta gcgtaaatcc gaccgcttgt gtgctatgta aataccaacg ctcaacgctg
     9661 cctttttgcg cggtaaaatc aatgcgtttt gggtcaaacc gcttttggtt gattaaataa
     9721 tcagccggac gaatggcaaa acgtctctct tggctgattt tcaggttaaa ttcctctaag
     9781 ttgaaagccg gtaaactcgg tttattattc aataccgctg ccattccttc agggcgaagc
     9841 tctaaaatca cgttatcatt caattcgtcg ttgtcagcaa agacctgccc gattttgtaa
     9901 aaaatatctc ttttttgacc gcttatcagc gataccgctt tcccttcgct taaatcgacc
     9961 aacacttcca ccctttcact cggtgcaagt tgaaccgatt cggtttcaag tggctctgcc
    10021 agcattccta agccggtggc gattaggtac aacggctgct cgttatctaa gcgtaattca
    10081 taagcacggg aaagtgaggc attgacgatc cgcaatctga cccagccacg aggcacgtta
    10141 aaataaggcg attcctgccc gttgacaaat aatcgcttac cgaaaaattg tgaggtgttt
    10201 ttatctaaca cctgtacgcc gtctttgttg agcagctggt cttgcagaat taacggaatg
    10261 tcgttcacgc catatttatt cggtaaagtg gcttttttgc tctgttcatc ttcaatcatc
    10321 cacaagccgg ctaagccacg atacacttgg aatgccgagt tgagcattgt atcggcgtga
    10381 taccaacaag tacaagccgg ttgattgata gaaacaatcg gcgaccagct acttttgggg
    10441 tcaagggaac gatgcaccgt gccaatcatc tcacttgagg cttgcaatcc ttgaatattc
    10501 attgagattt tttgcggtaa attattgaga taagttaatt tgacaaaatc ccccgatttt
    10561 acccgtacgg ttggggcaag atattgcccg ttcacacccc atacatcaac caatttgcct
    10621 ttatcaaatt gggtttgtgc ggggcgtaaa tccaaccgaa ccggctttcc tcgcccaata
    10681 tccattaaag gcggaatgtt cagttgcggt cgctctgctg ctaatagcgg tgttggcact
    10741 gttgcaaatc cagccgcaag ggcagagcct tgtaaaaatt ggcgtcgggt gatctgtttt
    10801 ttcatattag gcgttttttg cagtgttttc taactgttcg acttcttgat taagttgttc
    10861 aaattttgcc aacataattt gatggcactt ttccatcagt tctttgacgt tttcacggga
    10921 atagcctgaa gtatcaatcg gatcaagcat ttcacagatt actgtgccgt tatttgaacg
    10981 gttcaaatcc actttattgt gtaaattaga gcaaactacc ggcacaatcg gcacgccggc
    11041 agaaatggct aaatggaatg caccggtttt aaatggcagt aaaccacgcc cacggctacg
    11101 agtaccttcc gggaacatcc acaccgacac attgcgttct ttcacgattt gccctgcttt
    11161 attcattgtt tcaatcgcac tggaacgctt ttcacggtga ataaaaatat tgccggttgc
    11221 ccagtaaacc aaaccgaaaa acggaatcca aatcaggctt tttttgccga tactcaccgt
    11281 cttttctgcc accattgagg aaatcgttac catatcgtaa ttgttttgat gattgccgat
    11341 atagacaacc ggatagttaa tttccggctt tttgcgggta attaattcca acccgactaa
    11401 tttatgcaaa gcaccaaacc aacgagctac cacacccacg ctacttgggt gacgtaaacg
    11461 cagtaacgca taaatagtgc caaaaataga aatgaaaata gcggcaaggg caacaattaa
    11521 aatacgaaaa atttttaaca taatggaata accttaaaaa taaattgtct aggagtatag
    11581 caaaataagg ttattttcta aaggctatcc acattaaatt gatagtttcc tattttgcaa
    11641 aaaatcggta tatttaaacc gcttgtttat ttgataagga gaaaaaaatg agtaaagtga
    11701 ctttagcagg aagcccgatt gatgttgcag gcacatttcc acaaaaaggc gatgtggttg
    11761 ccgattttac cttagtcaac agtgatttaa gtgatgtttc gctttccgat tttgatggca
    11821 aacgcaaagt gttaaatatt ttcccaagta ttgacaccgg catttgtgcc acttctgtgc
    11881 gtgtgtttaa tcaaaaagcg gctgatgtag cgaatacggt tgtcctttgt atttcagcgg
    11941 atttaccttt tgcccaagca cgtttctgtg gagcagaagg aattgaaaat gccaaagtat
    12001 tatccagttt ccgtcatcgt gatttacaca acaaactggg ggtagatatt atttcaggtc
    12061 cgttggcagg cttaacttca cgttcagtaa ttgtgttaga tgaaaacaac aaggtattac
    12121 acagcgaatt agtgccggaa attaaacaag agccggatta tgaggcggcg ttagcggtat
    12181 tataatttgc agaattatgc tggaaaataa ccgcttgtaa agcaacaaaa agcccgttga
    12241 ttcaattcaa cgggctttgt ttttagtgat tatttcttac gagagtgtaa gccttttttc
    12301 tcaaggttac ggtaaatcaa ccattgctgt gcaatcgtga ttaagtttga ggttaaccag
    12361 taaagcacta agcctgatgg gaaccataag aagaacacgg taaagataac cggcataaag
    12421 gtcattactt tttgttgtac cgggtcagct accggtgttg gcgacatttt ttgtaacaag
    12481 aacatcgaac cacccattaa taaaggcaaa atgtagtatg ggtcttgtgc cgataagtct
    12541 tgaatccagc cgaagaaagg tgcgtggcgt aattctaccg cttccataaa tgtccaatat
    12601 aaagcaatga aaatcggcat ttggattaaa attggtaagc agccacccat tgggttcact
    12661 ttttcttctc tgtagagttt catcatctct tggctcatac gttggcggtc gtcgccgaaa
    12721 cgttcacgca tttcagtaat gcgaggttgt aacatacgca tttttgccat cgaggtgtat
    12781 tgtgctttgg ttaatgggta aagaatggtt ttcactacaa tagtgacacc gataattgcc
    12841 aagccccagt tgcttacgat tttttgaatt gcggttagta accagaaaag cggtttagcg
    12901 ataaaccacg cccagccgta atctacggtt aagtctaggt gatttgctga ttcgcccatt
    12961 tctttctgat ctttagaacc tgtccaaagt ttgctattta aattagcctc tgaatttggc
    13021 gcaatcgtag ttaaagggcc acggtaaccg atagttgcta ccccattatt ggtgcgtgaa
    13081 taaaggctgt tatccgcatc ttggtttggc acccaagcag acacgaaata gtgctgtaat
    13141 accgcaatcc aacccgcttt ggtgtccacg cttaagttgg ctttttccat atcttggaaa
    13201 ctgtattttt tgtagttggt ttctgaagaa gaataagccc cgccggtgta agtcggcatg
    13261 gttaaattgc cggaactttc aactatagag tgttttaatt gcccgtaagg ctgaacttca
    13321 atcgcttgtg cagtattatt tttgatattg aagtttaccc caacatcgta gctaccacgt
    13381 tttagcgtga aagttttggt gtaaaccaca ccctcttttt caaaggttaa tggtacagaa
    13441 atttcatttt gcccttcggc taatttgaag ctatctgccg ttaccgcata ttgtgggcga
    13501 ccggcattgg tatcaatccc gtttttaccc actaaaccgc tttgagcaac gtagattttg
    13561 tcgccgtctt gctgtaatag tttaaatggc gtgttagagt gtaattcagc attgtgtttt
    13621 aacaaatctg agccgatgac atcaccgcct aaggtatcaa tagtcagacg taatacatcg
    13681 ctttccacgg taatggtttt accttgcgtg atgctatctg cgattggatt attggcattg
    13741 gaagcagacg gaagatcacc cgcttgttgg gtttgtgctg ccacttgagc ttgtttttgt
    13801 gcttgaattt caggatcaaa atcttgttgc cattgtgtaa aaatcaaaat agacacaaga
    13861 aataaaccca ttagcagtaa gccacgatta ttcatgttgg aattctcttg ttagtaatgg
    13921 ataaaaagaa aggtatttta taataggtta gcttgttttc caaacgcctt ttatgaacaa
    13981 gcggtcggat tttccaagtt ttttgcaaaa ttttcggaga atttgaccgc ttgtggagaa
    14041 taagaaacta gcgtttatct aaggttttgg tggaaaggcg agcaactgca cacaggttac
    14101 cttgttcgtc tttaatgtcg atattccaaa cctgtacttc acgccctaat ttcagcggtg
    14161 tagctttggc aatcgctttt gtgcctgccg gaatcgattt taaatggctg atgtttagct
    14221 ccattcccac cgcaatttga tggggttcac acaccattaa cgcccctgca ttggcagtag
    14281 tttccgcgag tgctgccgat acaccgccgt gcaatacgcc aaacggctgt tgagtgcgtt
    14341 cgtccacctg aagctgtgct tcaatccaat cttcaccgat agcggtaaat tcaatcccta
    14401 agtgtgacac cgccgatttt tggctgagtg tgtttaattg ttcacaagtt gctgtttgct
    14461 tccaaatggt cattattatt tcctgtctaa taaaaaagct gtctatttag acagctttca
    14521 ttatctcttt gagcgaaaca tactacgcca atagtacatt gtttggtcgc ccatattacc
    14581 ttaagccata tagcactaag gaggtgattt atgtgagaaa atcagaagtt ttctttctgg
    14641 ttgcgttgct aatattatta gcaacttccg ctagcattaa agtactcacc atacttgatg
    14701 tgctagtttg gttattcgct agataaccta aaatcagaca gaggcaggct ggttacctgc
    14761 ctcgcttttt attctaagta cttttaggtt acatttcaac cttaaatcac gtccagcaac
    14821 gcttgaattg ggtgtttaat gccttgttgt tcaaaacgtt tgacttgcga gcggcaggag
    14881 tagccggttg ctaggcaacg ctcaagcggt ttatttttta atttaatttg ccatgattgc
    14941 tgataaatcg ctttcgacat ttcaacgtgt ttggtttcgt gtccgaacgt gcctgccatt
    15001 ccacagcaac cgacattttc attgagtaag gtttcaccaa aatgggtgaa aatagcttgc
    15061 cactctttca ttgagcttgg caaggcggtg gattcggtgc agtgagcaaa taaataccac
    15121 ggcaagcggt cggaatttgc cgattttttg caattttcca gctcgccgtt tttaatcact
    15181 tcccttaacc attcgtgtgc caataagact ttgaaatccc cccgagcttc tttgaggatc
    15241 tctttgtatt cttcacgata aagcaaagtt aaggcaggat cgacagccac catcggtagc
    15301 cccaatttcg ccacacggtt taaaaaatcg gcttggtttt tcgctgtttt cgcaaattta
    15361 tgcaaaaagc ctttaacgtg ttgtgcttta ccgcttggct tgaatggcaa cacaatcggc
    15421 ttaaagccta attttttaat gagagcgata aagtctgcca ccactttggc atcgtaataa
    15481 gaggtaaacg gatcttgcac aataaacaag gttttgcaat tttttgcaga aaaatcaccg
    15541 cttgtagctt gttgttcaag gctttctaag ctctcgcctt ggtagccgac ttccaccaac
    15601 tgatgttgca gatttggcac tgacaatgcc ggcaaatagg tcattccaat ggttttgttt
    15661 gcagcttttt cggcaaaagt tgaggtgctg aaaaagttaa aaaaacgtgg ttgtttcgcc
    15721 attaaagggg cgataaattc taagtttgag accacataat ctttcagtgg tcgcaaatag
    15781 cggctgtggt aaagctcgtt aaattgcgat ctgaacgtcg gtacgtcaat tttgattggg
    15841 cattggctgg cacaggcttt gcaggcaagg caggtgtcca tcgccgcttt gacttcgtgt
    15901 gaaaaatcat actctttgtt tttattgagc gtgttgcgaa tttttgcaac aaaatcagct
    15961 aatttgaccg cttgtttgcg aggtttgaag atcaaatcgt ccggcgaaac gttttgttcg
    16021 gtaagtaatc tgagccattc acgcacaaga gtagcccgcc ctttcggtga gtaaagacgg
    16081 ttgcccgaga ctttcattga agggcacatc gtgctgtgta catcaaagtt aaaacatagc
    16141 ccgttgccgt tacaattcat tgctccttta aattcttctc gcacttggat tggaatttgg
    16201 cggtcaaaat cggctcgcat ttgtgagtca atcgggtaga gcgaggtttc gctttctaat
    16261 ggtgtacaaa ttttacctgg gttcaagcga ttgtacgggt caaataaggt tttgatgtaa
    16321 cggagttctt gccacaaagt ttcgccaaag aaacgttcgc cgtagtaaga acgcatacct
    16381 ttgccgtgtt cgccccaaat caagccaccg tatttggcgg tgagttcgac tacttggtcg
    16441 gaaatttgct taaaggtttc cacttgggct ttgtcgcata agtcaagagc agggcgaacg
    16501 tgtagcacgc cggcatcaac gtggccgaac attccgtaag gcagattata gcgatctaat
    16561 aaagctcgaa attccacgat gtaatcggca aggttttccg gtggcacagc ggtgtcttct
    16621 acaaaggcga tcggttttgc ccagcctttg gcattgccta gcaggcctac ggcttttttc
    16681 cgcattgcgt agattttctc gatagaattt acatcactcg tgagttggta gccgataatc
    16741 ccggcttcat tatttgccat tttttgatca aggctttggc agagtgcttt cacttgggtt
    16801 tcaatttgag tctgatcgct tgaggcatat tcaacaatgt taatccctaa aatcgggttg
    16861 gctgggtctt cggttaataa atctgacacc gaatgccaga cgatatcttg cttggcaaga
    16921 ttgagcactt tggaatcaac cgtttccacc gataaggctt ttgcctctaa cataaaagga
    16981 gcggagcgta aggcggcatc aaaggaatta tatttaatat taattaaggt gcgatatttg
    17041 ggaatcggca gtaaattcag tttggcttcg caaataaagg caagcgaacc ttcagaaccg
    17101 gttaaaatac gggtaaggtt aaattcgctt tcaccatggt taaacacatt ttttaaatca
    17161 tagccggtaa taaaacggtt aagctgaggc agttcgttca gcactttggg gcgtaatgtt
    17221 ttgcaacggt tgaaaatttc acggtgcaag gttttgccga gagcggagag atttaaccct
    17281 tcaatatgtg caaaaaaatc ggcagatttg accgcttgtg tctctaaaat atcgccgtta
    17341 ataagcacag atttgatggc aagaatatga tcagatgttt tgccatattg caaagaacct
    17401 tgcccagagg catcggtgtt gatcattccg cctaaagtcg ctcggttact ggtagaaagt
    17461 tcgggggaaa agaaaagtcc atgtggtttt aaaaattgat tgagctggtc tttcaccacg
    17521 ccagcctgca ctcgaaccca acgctcttcc acattcagtt ccaaaatctg attcatatgg
    17581 cgggagagat caacaataat attattgtta agagattgcc cgttagtgcc tgtgccaccg
    17641 cctcgtggag taaaagttaa atgttgatat tctggctttt gggcaagttt ggttagaatt
    17701 acgacatcag aaacggattt cggaaacaga atagcttgcg gaatttgctg atacacgctg
    17761 ttgtctgttg ccagtgaaag cctatctgca taatttgatg caatttcccc actaaaatgc
    17821 tgattgacga gttcagttaa ataggattgg gtggctttat ccagttgcgg tacttcagag
    17881 agtctaggta tcataagctg tgttt
//
LOCUS       DANLXB010000032        17840 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLXB010000032 DANLXB010000000
VERSION     DANLXB010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17840
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            173..601
                     /gene="rplM"
                     /locus_tag="PXD41_000698"
     CDS             173..601
                     /gene="rplM"
                     /locus_tag="PXD41_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL6288255.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            618..1013
                     /gene="rpsI"
                     /locus_tag="PXD41_000699"
     CDS             618..1013
                     /gene="rpsI"
                     /locus_tag="PXD41_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL6288256.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            2695..4415
                     /gene="ltrA"
                     /locus_tag="PXD41_000700"
                     /pseudo
     CDS             2695..4415
                     /gene="ltrA"
                     /locus_tag="PXD41_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341372.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            4604..5380
                     /gene="yaaA"
                     /locus_tag="PXD41_000701"
     CDS             4604..5380
                     /gene="yaaA"
                     /locus_tag="PXD41_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL6288257.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            5380..5943
                     /locus_tag="PXD41_000702"
     CDS             5380..5943
                     /locus_tag="PXD41_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL6288258.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            5952..6857
                     /locus_tag="PXD41_000703"
     CDS             5952..6857
                     /locus_tag="PXD41_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL6288259.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            6857..7609
                     /locus_tag="PXD41_000704"
     CDS             6857..7609
                     /locus_tag="PXD41_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL6288260.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            7710..9035
                     /locus_tag="PXD41_000705"
     CDS             7710..9035
                     /locus_tag="PXD41_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL6288261.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(9095..9754)
                     /locus_tag="PXD41_000706"
     CDS             complement(9095..9754)
                     /locus_tag="PXD41_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6288262.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            9983..10969
                     /gene="pheS"
                     /locus_tag="PXD41_000707"
     CDS             9983..10969
                     /gene="pheS"
                     /locus_tag="PXD41_000707"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL6288263.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            11017..13404
                     /gene="pheT"
                     /locus_tag="PXD41_000708"
     CDS             11017..13404
                     /gene="pheT"
                     /locus_tag="PXD41_000708"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL6288264.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            13462..13758
                     /locus_tag="PXD41_000709"
     CDS             13462..13758
                     /locus_tag="PXD41_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL6288265.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            13797..14318
                     /locus_tag="PXD41_000710"
     CDS             13797..14318
                     /locus_tag="PXD41_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6288266.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            14334..15377
                     /gene="degS"
                     /locus_tag="PXD41_000711"
     CDS             14334..15377
                     /gene="degS"
                     /locus_tag="PXD41_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL6288267.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            15386..16060
                     /gene="cmk"
                     /locus_tag="PXD41_000712"
     CDS             15386..16060
                     /gene="cmk"
                     /locus_tag="PXD41_000712"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL6288268.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            16152..17819
                     /gene="rpsA"
                     /locus_tag="PXD41_000713"
     CDS             16152..17819
                     /gene="rpsA"
                     /locus_tag="PXD41_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL6288269.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
BASE COUNT         5515 a         3116 c         4053 g         5156 t
ORIGIN      
        1 tagatttttg agtgaaatct ctgtataatt tcgccaccct gtttttgtgt ggttttcccc
       61 gccacacaag tttggtctga atcagactcg aaggggtcgg gttcaccgta aaataatagg
      121 aaatacctca atgaggtatt gggttttaaa ctttaaattt ggtatttaat taatgaaaac
      181 ttttgtagca aaaccagaaa cagtacaacg tgactggtat gtagtagatg cgacgggtaa
      241 aacattaggt cgtttagcga ctgaattggc acgccgtctt cgtggtaaac ataaacctga
      301 gtacactcca cacgttgata ccggtgatta catcatcgtg atcaatgcag acaaagtagc
      361 agtaacaggt aaaaaacaaa ctgacaaaat ctactactgg cacactggct atgtaggtgg
      421 catcaaagat gcaaccttca aagaaatgat tgctcgtcgt cctgaagctg tgattgaaat
      481 cgcagtgaaa ggtatgttac caaaaggtcc acttggtcgt gaaatgttcc gtaaattaaa
      541 agtttacgca ggttcagaac acaatcacca agcacaacaa ccacaagttt tagatatcta
      601 attcacggag cataaaaatg acagcagcaa atcaaaacta cggcacaggt cgccgcaaaa
      661 gctcttcagc ccgtgtattt atcaaaccgg gttcaggtaa cattactatc aaccaacgtt
      721 cacttgaagt ttacttcggt cgtgaaacag ctcgtatgat cgtacgtcag ccgttagaat
      781 tggttgaatt aactgataaa ttagaccttt acatcactgt taaaggtggt ggtatttctg
      841 gtcaagcggg tgcaatccgt cacggtatca ctcgtgcatt aatggaatac gatgaaacgc
      901 tacgcccagc acttcgtgca gcaggcttcg ttactcgtga cgcacgtcgc gttgaacgta
      961 aaaaagtggg tttacacaaa gcacgtcgtc gtccacaata ctcaaaacgt taagtgcgac
     1021 aagttgtcgt acttatggca ataactcctt atatatcaag gagttattgc tggaagtggg
     1081 tggtattctt atcacctgct tccgactttc caagcactct tcggagtgct tggaaagaca
     1141 ggcaagagaa aaggggcttt gcccaagcac tcttgttcta agttgggaaa gtaaatgaac
     1201 caactcgaaa ggctgtaagg tatgatcttc actttgatgt acttggtttt tttcttaata
     1261 ccaagataga gtaagaaagc aagatccgca gaccggagtt acccataccc cagagcagag
     1321 aaaatttaca acacctacta taaataaagt ccaatagatc gcctcagcac tcagaaaaga
     1381 catcagaact aagacttggt aaatcttagg gaaggagtgc catctttact tatacttttc
     1441 acactcgcaa tctacggtaa tcgtagaatg ctcctcaata gtgaataaaa acactaagga
     1501 taaactcttg tttattcgtt tttatgagct agggataatt ataccttaaa ttctcgttaa
     1561 aatcacctct aatactcaca ttagctaggg ttagctacct tcgcctattg gacaggttat
     1621 aggctatttg cgggaaaatt tggatataga caaagcgact ttagtcgcat aagtgaattt
     1681 attttgtaaa ggttcggact tatttatgca gtataggata ctgacttagt aagtatgcgt
     1741 aagctattac tgtcattgtt acggtcaaac aatccgaaga tatgagtagt acggagggaa
     1801 tgataaggta acctgttata tggctaacag tagtctaggg atagtgcgac accggtaacg
     1861 gtgtggtgcg gagcttcctg acaatgaacc cctgatgaaa atcagtcaat gaaatcgtga
     1921 gaggacattg ggagaaagtg aatagcacac cttcaagggg ctagactggg tagaaagata
     1981 aacgtaagtg aacagttgat aaacctcgtt atcgagagag agccaaagct attgataggc
     2041 tctgaccaaa aggtaggcag tcggttattc ttctttaacg tgaggatacg ccatcaaagc
     2101 actgtcgggg gagagactgt atcttcacta ctcgtgtgat agtaatggaa cttggtaagc
     2161 ctgtatttct gccttgccca caatactcaa accgtttgaa atagatggcg aaggtaaaag
     2221 aggaaaaggc aagtaaagcg taagcgatac tgttgggaat gcaggtaagg gaggttagaa
     2281 aaagcgaatg ctatgctgta atggcataga tagggtgtga aacatagcct aacccgaaag
     2341 ggtgcagact tctaactggt ctttcatcgt aagatgaata gcgtttcctt taagggtaac
     2401 accgaaagag attgtagata acagaagaga aattgaatgt tatcaaggaa tacaatgttg
     2461 aataggtaca aaaacaaatt aaagaaatga gcgttaggct catcataacc tagcgctcga
     2521 ctctttaacc caatcggtta caagagcggt tgaaattatc ggtaaaacgg taagatcctc
     2581 ttgtaaccaa agggaataaa ctaaggatag tttatctcaa tagggatttg tttacttgaa
     2641 ggatctaccc acttgctgag actttcgact tatcttgtaa tatcagaggt aggtatgaaa
     2701 gagcgtaagc attatactga aaagttagct tgcaatccag cgacctcgca catctccaaa
     2761 tggcattatg tcgattggca taaagctgaa acgtatgtga aaggaatgca aattcggatt
     2821 gcgaaggcaa cactggaagg caattggcgt aaggttaaaa acttacaacg aatgctaacc
     2881 cactcacatt atgctaaatt agttgcagta agaagagtga ctgaaaatca aggtaagcga
     2941 acaagtggtg tcgataaaga gctttgggag accccagaga caaaatggca agccgcacta
     3001 tcattgacgg aaaaagggta taaacctagt ccattaagac gagtgtatat ccccaaaccg
     3061 aatggaaaga aacgtccgtt gggtattcca acaatgcgag atagagcaat gcaagccctt
     3121 tatttattgg caatacaacc tgtggcagaa acaactgcgg ataaaggttc ttatggattt
     3181 agattaaacc gttcaacggt agatgctatt actcatatac actaaattta ttcgcataaa
     3241 ggcaagaaaa ctaatcaacc tgttgagtgg gtacttgatg cggatattgc aggttgtttt
     3301 gaccacataa gccacgactg gctattaaag catattccaa tgaataaacg gatattgcgg
     3361 aaatggctaa aatcaggtgt agtggaattt ggacggttga aacgaacaga ggaaggtaca
     3421 ccacagggtg ggattatctc gccaacgctt gcaaatatgg cattagatgg attggaaaaa
     3481 ctgttagaaa ctcattttgg aggaaaaggc agtcggacaa ttcgagaaaa taaaacttac
     3541 ttagtacgtt atgcagatga ctttatcata tcaggtaaaa cgaaagagtt acttgaaaat
     3601 caagttatcc cacttatcca gaactttctg aatgaacgag gtttatcctt atcaacagaa
     3661 aagacgaaag tggtacatat tgaagaaggt tttgattttc taggttggaa tgtgagacgt
     3721 ttcaaaggaa aaatactgaa cagaccaagt caaaagaatg tgaaagcgtt ctacaacaag
     3781 gtaaaagagg taatttctaa atgaaaatgg ctaaacagga agatcttata atggtgctaa
     3841 acccaatgtt acgaggttgg gcaaattatc atcgaagcca agttgcaagt aaggcattcg
     3901 gacgaatgga cgcattagtt tggaaagtac tttggaaatg gtgtgaacgc cgtcatcaca
     3961 ataaaggtat tatgtggata aaagagaaat acttttgtac cacagcgact cgaaattggg
     4021 tatttggcac agtttatacc aatgaaaaag gagaaactaa gccgatagac ttattctatt
     4081 gtggctatgt taaaatcaaa cgacacgtta aaattaagtc tgaatataat ccgtttttgc
     4141 ctgaatggga gttgtacggc gaaaaactga gccaagaacg tctgtatgaa gaacaatcac
     4201 acagacgaca atggcaggca ctgtataaag accagcgtgg aaaatgtgca ttatgtgggt
     4261 tgccaataac caaagaaaca ggctggcacg atcatcatat cgtgtacaaa atgttaggag
     4321 gaagcgatgc attaagcaat cgttgtttgg tacatccgac ttgtcacata aagattcata
     4381 ctttgaactt ggaggtcgtg aagccggcta tatagctgat gaaaggcttg agctgtatgc
     4441 agagaaattt gcttgtacag ttcttagggg gcggaggtgc agtaatgtac tttcgctacc
     4501 cgacttttct tttcgttttc aagaaggcag ggtttcctgc cttttttgtc tttatgactg
     4561 tggtagaata accgccctga ttaactattt gatagaggca tttatgttag ccattatttc
     4621 ccctgccaaa acccttgatt ttaaaaccaa tattgacggt tttgcatttt ctcaaccaaa
     4681 tttgaccgct tgtagccaag aattaattga tatttgtaaa cagctttcac ctgctgaatt
     4741 aggtagtttg atgtcaatta gcgataaatt agccgcttta aatgtggctc gctttgccga
     4801 gtggcagctt gagcataacg aacaaaatgc caaagccgcc ctctttgcct ttaaaggtga
     4861 tgtttatacc ggactagagg cagaaacgtt aagcaaagca caagttgaat atgctcaaca
     4921 acatttgcgt atgctttcag gcttgtatgg tttattaaag ccgttagatt taatgcagcc
     4981 ttatcgttta gaaatgggca ctaagttagc caatccgaaa ggcaaagatc tttatgcttt
     5041 ctggggcaat attattactg aaaatttgca gcaagcgatt gatgaacaag gcgatgatat
     5101 tttagttaat cttgcctctg atgaatatta tggtgcggtt aagccacaaa atctaaatgc
     5161 gactattatc aagccggtgt ttttagatga gaaaaacggt aaatataaag tgatcagctt
     5221 ctatgccaaa aaagcccgtg gaatgatggt tcgctttata ttagacaccc aaccgactag
     5281 catcgaacag ctcaaacagt ttaactacgg gggctattgg tttgatgcag acagttctag
     5341 tgaaagcgag ctagtcttta aacgtgagga gcaggcataa tgtcggctat caaaaaggga
     5401 ataactttgg ttgcgttatc attggcaggt tgtgtcagcc aaagcccaca atttgcagtg
     5461 cctgatgcta ttcactttgg gcaggatact tttgtaaaag tcacccacag ccaaattgat
     5521 gaaatgcaac atttacttta tttgccagaa aagagtgaga aaaatccgga aaattggcaa
     5581 aaaggcattt tatttttctt agataaaaac agtaaaaatc aaaccttaga gcaacgagct
     5641 gcattccgcc aagcaagttt tgcgaaaaag ccggagcttg aggcgaaagt ggaaattcag
     5701 caaaatgaat tacacagcag tgtgatttat ccacctatag aacgttttaa caatgtgatg
     5761 ttagaagtaa cccgtgggcg gaatttagct tgtggttacg ggcagattca atttgcagat
     5821 aagcgggaag ttggcaagac agttgcaaaa aaatcgccga atttgaccgc ttacagccaa
     5881 gaaattgcta gactttctct tgaattaaac caactgggtt ggcaagtcca atgcagtaaa
     5941 taatgtagta aatgaacgaa aaatacagca aattagtcaa aaatgcagcg aatttagcga
     6001 ttattgttgc gatcttactg attgtgatta aagcctttgc atggtggaaa accggttcga
     6061 tttcaatctt ggcagcaatg acggattcgg tagtggatct gtttgcttcg ctaaccaata
     6121 ttttagtgct gcgttttgca ctacaaccgg cagatgagaa tcacgcgttt gggcacggca
     6181 aagcggagtc tttggcggca cttgcccaaa gtgcgtttat ttccggctcg gcggttttcc
     6241 tactgctaca aggtttccat aaactcacca atccggaatt aattgctcaa tcgagtattg
     6301 gggtaattgt cagtattgta tcaattgtga ttactgcact tttagtcttt tatcagcgtt
     6361 atgttgtcac gcttacgaaa agtccggcga ttgaagcgga ttcgttacat taccaaactg
     6421 atttattaat gaatgcggca attttagtgg caatgttgct taatagtgcc ggttttgtgt
     6481 acgccgatgc agtttttgca ataggtattg ccctctacat tgctttcaat gcagtaaaaa
     6541 tgttttggtg tgcggtgcaa accttgctag accaagcttt gcccgatgaa gaaattgagc
     6601 ggattaaaga gattgcttcg caacatccga acattttagg gattcacgat attctaaccc
     6661 gccgtgcagg tgcagtgcgt tttatccaat tacatttgga attagacgat cacttaacgc
     6721 tgctagtagc tcacgaaata actgatagcc ttgagcagaa attgctggcg gcatttccga
     6781 tgtctcacgt gattattcat caagagccga ctacggtggt caaacaagaa tttcaagata
     6841 tggcggagaa tatttaatgt atcaggcgat agtgcatttc agctatcata attttgagca
     6901 agatccggtg acggcaatta gccaaatctt aaatcaatgg ttatataacg ggcaagtcat
     6961 tggcagagaa atgccgatta cttttcatca aaacgagttt caagctcggg tttgtgtgcc
     7021 tacacaagaa agccttttgc cacaatataa tagtgatgaa gtaaatgaag cgttgcaaca
     7081 agcggtcgaa atcggcgtaa tttttgcaag ttttgagctt gtcgggcgag attatcaggg
     7141 cgaagaaagc agtcataacc gctcgccagc gtttcaaata ttatatacca cccatttaga
     7201 tacctgctcg ccactttatg atggagagca gtttgcccca attccgcttt attctttaca
     7261 ggatcagtct cttagcgaag cgatattgga atggcagcaa aattggcaag cgtgcgatct
     7321 gctacaaatg aacggcaatc tgctggagtg ccacgcactt gttcaaatta gtgatgaaac
     7381 aagcgatctt gcaatgatcg gtcgagatct atgtcagcaa attgagcaga aaactcacat
     7441 tcccaccttt tattacctct accgtttagg gcgtgatgaa agtgaatatc aacgcaaatg
     7501 cccttgttgt ggcggagaat ggaaattaac tgagccgttg cacgatattt tccattttag
     7561 atgtgagcct tgccgtttga tctctaatct aagctgggaa ttattataac ttttagttat
     7621 accaaagtaa taaatcatct tgaatgaatg ccgcaagcgt aatacccttg cggcattttt
     7681 ataataagcg gttttacttt ggaggttctg tgcttatttt caacttaatt gtctttgcgg
     7741 caatattatt tttattggct aaaatttata aatctacgca aaaactcggt caaacagtgt
     7801 ttattgggtt atttttaggg cttgcaagcg gtgctttttt gcaaactttt tacgaaaaag
     7861 ctactgttga tgcaactctt gattggatta acttaattgg taacggttat gttcgcttgc
     7921 tacaaatgat cgtaatgcca ttggtgtttg tctctatttt atcggcaatt acccgcttaa
     7981 aagaggcagg atctttaggc aaaattagtt ttagtgtgct atcagtgtta ttagtgacca
     8041 ccgcgattgc cgcagcgatt ggtattgctt tagtgtatct gtttgattta tctgccgagg
     8101 gtttagtcgc cggctcccgt gagcttgccg ctcaagagaa agtggtaggg cgtgtggagc
     8161 aggtgagcaa cttatctgtg ccttcaatgt tgctttcttt cattccgaaa aatccgtttt
     8221 tagaattaac cggtgcaaac ccaacgtcga tcatcaacac ggttattttc tcggctctgc
     8281 taggcattgc tgcactgagc ttaggcaaag aagataaagc gttgggcgaa cgtatcgcac
     8341 aaggtgtaga gaccttaaat aaactggtta tgcgtttagt acgttttgtg attcgcctaa
     8401 ccccttatgg cgtatttgcg ttgatgatca aaatggcggc aacttctcaa tggagcgata
     8461 ttgtaaattt aggtagcttt attgtggcat catacattgc gattggtttg atgtttattg
     8521 tgcacggtat tttactcttt gtggctaaaa tcaacccgtt ggattactac aaaaaagtgt
     8581 tgccgacatt aagttttgct tttacgtctc gttccagtgc ggcaaccatt ccgttgaata
     8641 ttgagacgca aaccaataaa ttaggtaata acagtgtgat tgccaacttt tctgcaacct
     8701 ttggggcaac catcgggcaa aatggctgtg cgggaattta tccggcaatg ttggcggtga
     8761 tggtcgctcc aacagtggga atggatccgt ttagcttaaa ctatatttta accttgattt
     8821 tggtggtggc aatttcctca tttggcattg ccggtgtagg tggtggtgca acttttgcgg
     8881 cgattgtggt gctatcaacc ttgaatctgc cgattgagtt agtaggcttg ctcatttcag
     8941 ttgagccgat tattgatatg gctcgcaccg ccttaaacgt gaatggtgca atggtggcgg
     9001 gcacattaac caataaatgg gtgaaagccg agtagtcaaa actaaagata taaaaatggg
     9061 cgattaattc gcccgttttt ataagttaag gtgattattc aatccacgca atcacttctt
     9121 cggtaggttt gcgggatttt ttcttaattt ctttgttgcg atagccaaaa gttatcatac
     9181 aagacacacc atattcgttt aggtcaaata agccttcgtc cgataaaatt tggtttacgg
     9241 tatcgtaatg aaaaccttca atcgggcaag agtcaatacc aatcagagcc gcaccggtca
     9301 tcatattgcc taatgcaata taggtttgct tggtactcca atcgaataat tcacgttcac
     9361 taagcaattt catatcctct tcttggaacg acttatagcg taccagcgag gcttcaatct
     9421 gctcataggt taagcctcgt ttggctaaca tatcacgcat atagacagaa tcataacgga
     9481 cattcttttt ggttaaaatc accactaaat ggctcatttc ttccattggg tgtttaattc
     9541 cccacgaaac cggggcgatt ttctgacggg tttccgggtt ttgtagcact aaaaatttcc
     9601 acggttcaga accgacagag cttggtgaga gacgcccgag ttccaaaata taatccatat
     9661 cttctttgtt gatttttttg tttggatcgt aactgcgaca ggccgaacgg aagtgaaaag
     9721 cgtctaaaac ttgctgtttg ctaatattaa acatcgtttt tccttttata agtgaaataa
     9781 gtagattaat gataacttga tttagagcag aatgcgaatt tcacgcctgt taatttgcaa
     9841 aaaattagga aaaaatgacc gcttgtttaa aattgcttta ccttaaaaat caatcattta
     9901 acgaatcggt tgatttactt tttctggcta aagtattatt attcatgaaa ttttttattt
     9961 cattgagttt agaggatagg taatgcaaca cctaaaagat ttaactaata aagcacgtga
    10021 agctttagat aagattgatc aaaatttaga ggctttagaa gagtttagag tcgaatattt
    10081 tggtaaaaaa gggcatttta caacgttaat gcaagaatta cgcaatattg cagcggaaga
    10141 aagaccggca atcggagcaa aaattaatga agcaaagcaa gttgtgcttg atgtgttaaa
    10201 tgccaaaaaa gaagaatggg aacaagctgt attaaatgca aaattagcta atgagagcat
    10261 tgatgtttca ctgccggggc gtaaaactga attaggtggt ttgcaccctg tttctatcac
    10321 tattgagcgt gtggtgaaat ttttctctga attaggtttt accgtagcaa acggacctga
    10381 aattgaaacc gattactata acttcgatgc gttaaacatt ccggatcatc atccggctcg
    10441 agcggatcac gatacgtttt ggtttgatgc caatcgttta ttaagaaccc aaacctcggg
    10501 tgtgcaaatc cgtacaatgg aaaatgtaaa accgcctatc cgtattgtgg caccggggcg
    10561 tgtatatcgt aatgactacg accaaaccca cacaccgatg tttcaccaaa tcgaattgtt
    10621 atatgtggat aaagaagcaa actttaccga gttaaaaggc ttaattcacg attttctcaa
    10681 agcattcttt gaagaagatt tacaagtgcg tttccgcccg tcattcttcc cattcactga
    10741 gccttctgca gaagtagatg taatgcgtca aaacggcaaa tggttagaag tgttaggttg
    10801 cggtatggta cacccgaatg tgttacgcaa tgtagggatt gaccctgaag aatatagcgg
    10861 ttttgctgtg ggaatgggcg tcgagcgttt aacgatgtta cgctacaatg tcacggattt
    10921 acgttcattc tttgaaaatg acttacgttt cttaaaacaa tttaagtaat acaagcggtt
    10981 aaaaatttag aaaattttac aaataggata gaaataatga aattcaatga atcttggttg
    11041 cgtgaatggg taaacccagc aattagcaca gaacagttat gcgaccaaat tacaatgtta
    11101 gggttagaag ttgacgatgt agagccggta gctggtgcgt tttcgggtgt agttgtgggt
    11161 gaagtggtgg aatgcgccca gcacccggat gctgacaaat tgcgtgtcac taaagtgaat
    11221 gttggtggcg aacgtttatt agatattgtt tgtggtgcac caaactgccg tcaaggttta
    11281 aaagtggctt gcgctgttga aggtgcagtg ctaccgggcg atttcaaaat taagaaaacc
    11341 aaattgcgtg gtcagccttc agaggggatg ttatgttctt actcagaact tgggattaaa
    11401 gaagatcata gcggtattat tgaattacct gctgatgcac ctattggtca agatttccgt
    11461 gaatatttaa atttaaatga tgtggcgatt gaaatcagcc ttacgccaaa ccgtgccgac
    11521 tgcttaagca ttgccggcat tgctcgtgaa gtgggggtga ttaaccgtgt cgatgtgaaa
    11581 gctccaacta ttacagatgt aaaagccacg atttcagata aagtttcagt ggaattacaa
    11641 gcaccggagg cttgccctcg ctatttagcc cgtgtggtga aaaatgtgaa tgtcaaagcg
    11701 acatcgccac tttggttaca agaaaaatta cgccgttgtg ggattcgctc aatcgatcca
    11761 atcgttgata ttactaactt gagcctttta gaattagggc agccaatgca cgcctttgat
    11821 gcagcgaaaa ttgaaggtgg cattcaagtg cgtatggcaa aagaaggcga agaattggta
    11881 ttgctagatg gcacaaacgc taaattacaa tcgaatacct tagtgattgc tgatagcaaa
    11941 ggggcattgg ctatggcagg tattttcggt ggcgaagcca gcggggtgag cgagaatacg
    12001 aaagatgtgg tgttagagtc tgcatttttt gctccattag cgattaccgg tcgcgctcgt
    12061 caatatgggt tacataccga cgcatcacac cgttttgagc gtggggttga tccagaatta
    12121 actcgtcaag caatggagcg tgcaacggca ttattactgg aaatttgcgg cggtgaagca
    12181 ggtgaaattg tggaagccgt gagccaagaa aacctaccaa aacgcaatac tgtcacgctt
    12241 agacgcagta aattagattc ggtgattggt catcatattg acgatgcaac ggtaaccgat
    12301 attttaaccc gcttaggctt gaacgtaaca tttgcggata atagttggac ggcaattgct
    12361 ccaagttggc gttttgatat tgaaattgaa gaagatttaa ttgaagaaat cgcgcgaatt
    12421 tatggctaca acagtatccc aaataattcg ccacttgctc atttaacgat gaaaggtacg
    12481 ccggaaaaat tactggaagc aaaccgtatt cgtatggcat tggtagatag tgattaccaa
    12541 gaagtgatta cttatagctt tgttgatccg aaaaaacaat cattattgca cccacagcaa
    12601 gaagccttga ttttaccaaa cccgatttca agtgaaatgt cggcaatgcg tgtttctctt
    12661 ttaaccggtt tgttggacac tatcgtgtat aaccaaagcc gtcagcaaaa ccgtgtgcgt
    12721 atttttgaag caggtctacg ttttattccg gatagcaatg cggaatcagg cgtgcgtcaa
    12781 gaatttgttt ttggtgcggc gattgtaggc gataaacgtc cggtacattg ggaaaacaaa
    12841 tcagaagcag ccgatttctt tgatttaaaa ggcgatattg agcgtattct ttctttaacc
    12901 tctatccgcc acgatctgca atttgtcgca aaacagttcc cagcattaca cccggggcaa
    12961 tcggctgcga ttatgcttga tggcaaagaa attggtttta tcggaactgt tcacccgtca
    13021 attgtgcaaa agtttggcat taaaggcaaa ccgattgtat gtgaaattct agcatcagct
    13081 attgcagagc gtccggttac acaagcgggc gaaatttcta aatttcctgc aaataaccgt
    13141 gatattgcgg tagtggttga tgaatctgtt cctgcaggtg aggtgttaga ggcttgtcgt
    13201 aaagctggtg gtaataaatt agtggcagta aatttatttg acgtttaccg tggttcgaat
    13261 ttagaaagtg gtaagaagag tttagccatt agcttaacgg ttcaagataa tgaaaaaaca
    13321 ttagaagaaa atgaaatcaa tgcggtaatt caagcggtat tagctgaatt agcaacacgt
    13381 ttcaatgcgg tacttcgtga ttaatcagta aaatatggct gatttatttt atcagccata
    13441 acaataaact aaggataaat gatggcgctt accaagattg aaattgcaga aaacctgatt
    13501 gaaaaatttg ggttagaaaa gcgtgtagcg aagcaatttg ttgaattgtt ctttgaagag
    13561 atccgatcct ccctcgaaaa tggtgaagaa gtgaaattat ctggttttgg taatttttca
    13621 ctgagagaaa aaaaagctcg tccaggaaga aatcctaaaa cgggggaaaa tgtggctgtt
    13681 tcagcccgtc gagtagtagt ttttaaagct gggcaaaaat tacgagaacg tgttgagcaa
    13741 gctagctccc aatcataggg gcagttatat tagttagatt taatgtggag taataaatga
    13801 aattaaccaa acggtggctt tccttaggtt gtttgttagc tattacagcg atgttagtgg
    13861 cttgttcaag ttcagataca acctctaagt ctcaagtaaa aagtaaagtt tatcgttcaa
    13921 tataccaatc agacctttct gatcctatta tggcaattag tcgattaagt gaacatcaac
    13981 acgaatggaa aggcactcgc tatcgtttag gtggcaatag caaggctggc atcgactgtt
    14041 ctggttttat gcaagtcact tttaaagatc tttttgggat agatttgccg agaaccacca
    14101 cagagcaggc taaggctggt gagcgtatat ccaaagacga attgcgtaca ggtgatttag
    14161 tttttttcaa gacagggcgt ggtccaaatg ggaaacacgt tggtgtttat gtaaaaaatg
    14221 ggcaatttct tcacgcctca acaaagggag gggtgattta ttctgatttg gattcgccat
    14281 attggtctaa ggctttctgg caggctcgtc gtttataatt tagggtaaca tacatgctga
    14341 aaaaaatcgg acaagcggtc atatttggac ttttttgtgc aattttaatt ttgtttgtag
    14401 ctccaattat tcagagtaaa gggagttcgt tttcattatc agcattcact caaaaagaga
    14461 ttgtaagcta caatgcagcg gttaaaatag cctcccccgc agtcgttaac gtatatagcc
    14521 gaaattttag ttctgaaaat gaaacatttg aagttaagaa tttaggttcg ggtgtgatta
    14581 tgagtagcga tggctatatt ttaactaaca ggcatgtgat tgaagatgcg gatcaaatcg
    14641 tgattgcttt gcaaaacggt gctatttcga ctaatgtaaa attagtcggc gatgattctt
    14701 taactgattt agctgtttta aaaattgagg gtgagaattt acctactatt ccacaaaatc
    14761 cggagcgcaa actacaaatt ggcgatgtgg tgttggcaat tggtaatcct ttgaatttag
    14821 gacagagcat tacgcaaggg atagtcagtg ctattgggcg aaaaacctta acagaaagtg
    14881 gtagacaaaa ttttattcag acagatgttt ccattaatca agggaactca ggtggtgctt
    14941 taattaatac tgctggtgag ctaataggta ttaacacttt gcgttttggg aaaaatacga
    15001 atgaattgtc agagggccta aattttgcga ttcccattaa tctggcgaat caaattatga
    15061 gtaagatcat taaagatggc cgagttattc gtggctattt tggggtaagt acagatttgc
    15121 ttgacaccgc aaaaatgcaa ggttatgaaa aaggggtgat cattgttaat gtagataaaa
    15181 atgggccagc cgcaaaagcg gggattcaag caggtgactt agtgcttaaa gtcggagata
    15241 ttgaggcatt ctctccttct caaatgatgg aagagcttgc tgaaatgaaa ccttatacta
    15301 cagtaaaagt attggttcaa cgtgatgaac aattacttaa ctttgatgta actattactg
    15361 agttacagac tcaatagggt agaaaatgaa aaaaatagtg attacagttg atgggccgag
    15421 tggtgcaggt aaaggaacgt tatgtcatgc attggctgaa aaattagggt ttgatttttt
    15481 agattctgga gccttatacc ggattactgc attaagcgca attaaaaaag aggttcccct
    15541 tgatgatgag gaaaaactag cggaagttgg gcgtaatctt gatattcaat ttttgccaga
    15601 aaatggcgag attcaggtga ttttggaagg agaaaatgta ggcgacttaa tccgaacggc
    15661 agaagcaggt caaaatgcct ctaaagtcgc tgctttccct ttggtacgtg aagcactttt
    15721 agaacgccaa agagccttta gtagcgaaaa aggtctgatt gcagatggac gagatatggg
    15781 gacagttgtg tttcctgatg cacaaattaa gctgttttta gatgcaagtg ccgaagaacg
    15841 cacaaaaaga cgtgtaaaac agttgcaaga aaagggattt aatgctaact ttgacgagat
    15901 tttagccgag ataaaagaac gtgattttcg cgatagaaat cgatcagtcg cgccacttgt
    15961 tccggctaaa gatgcgttgc tgttagattc aacgcattta tcaattgaag atgtgattaa
    16021 ccaagcatta aatcatatcg ctcaatacat taaattttag tttgttgctt cacataggat
    16081 ttgtgtagct tttattatca accccgttta acaggacgtt agatggatgt ttatttttaa
    16141 gaagatttat tatgtcagaa ttatcgtttg ctcaactact tgaagaatca tttgcagcta
    16201 caccacgttt aggtgatgtt gttaaaggta ctgttgttgc tatccaaaaa ggcttagtta
    16261 ttgttgatac aggtttcaaa tctgaatctg caatcgatgc ctcagaattt actaacgcac
    16321 aaggtgaatt agaagttcaa gtgggtgatg aagtagatgt tgttcttaaa gctgtagaag
    16381 acggttttgg tgcaacagta gtttctcgtg gtgatgcaaa acgtaacgaa gcttggattg
    16441 ctttagagaa agcatttgaa gaacaagcta cagttatcgg tttcgtaaat ggtaaagtaa
    16501 aaggcggttt cactgttgaa ttaaacggtg ttcgtgcatt cttacctggt tcattagttg
    16561 atactcgtcc ggttcgtgat tctttaaacc tagaaggtaa agagtacgaa ttcaaagtaa
    16621 tcaaattaga tcaaaaacgt aacaacgtag tagtatctcg tcgtgctgtt atcgaaacag
    16681 aaagcaacca agatcgtgat gcggtattag caaacttagt tgaaggttct gaagttaaag
    16741 gtacagttaa aaacttaact gactacggtg cattcgtaga tttaggtggc gttgacggtt
    16801 tattacatat cacagatatg gcttggaaac gtgttaaaca cccaagtgaa gtggttaatg
    16861 taggcgatga agttactgtt aaagtattaa aatttgacaa agacaaaact cgtgtatcat
    16921 taggcttaaa acaattaggt caagatcctt gggctgtaat tgctgaaaac cacccggtaa
    16981 acagcaaatt aactggtaaa gtaactaact taactgacta cggttgcttc gttgagattt
    17041 tagacggtgt tgaaggttta gttcacgttt cagaaatgga ttggacaaac aaaaacattc
    17101 acccatctaa agtggttaac gtaggcgatg tagttgaagt aatggtactt gaagttgatg
    17161 aagaacgtcg tcgtatctca ttaggtttaa aacaatgcaa agcaaaccct tgggaacaat
    17221 ttgcggcaac tcacagcaaa aatgataaag tatcaggtaa aatcaaatca attactgact
    17281 tcggtatttt catcggttta gaaggtggta ttgacggttt agttcactta tctgacattt
    17341 cttggaatgt ttcaggtgaa gaagcagttc gtaactacaa aaaaggtgat gaagtagaag
    17401 ctgttgttct acaagttgat gcagtgaaag agcgtatctc tttaggtatc aaacaattag
    17461 aatctgatcc tttcacaaac tttgtagatg gtactaaaaa aggtgcaatc ttaacaggta
    17521 aagttgtaga agttgatgct aaaggcgtta aagttgaatt ggaaggtggc gttgaagcat
    17581 ttattcgtgc aaacgaagca actgctgagc gtgtagaaga catcacttct gttatttctg
    17641 ttggcgattc aatcgaagcg aaatacaccg gtgttgatcg taaatctcgc gtagttaact
    17701 tatctgttcg tgcaaaaaac gaagctgaag aatcagcagc aattgcacaa gtgaacaaag
    17761 aggaagttgt tgtacctaat gcatttgctg aagctttcaa agcagctaaa ggcgaataat
    17821 tagtatagac taatctaaaa
//
LOCUS       DANLXB010000033        17528 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLXB010000033 DANLXB010000000
VERSION     DANLXB010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17528
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            15..1349
                     /locus_tag="PXD41_000714"
     CDS             15..1349
                     /locus_tag="PXD41_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6288270.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(1429..1839)
                     /locus_tag="PXD41_000715"
     CDS             complement(1429..1839)
                     /locus_tag="PXD41_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6288271.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(1962..2639)
                     /locus_tag="PXD41_000716"
     CDS             complement(1962..2639)
                     /locus_tag="PXD41_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6288272.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            2757..3569
                     /locus_tag="PXD41_000717"
     CDS             2757..3569
                     /locus_tag="PXD41_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6288273.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(3617..3886)
                     /locus_tag="PXD41_000718"
     CDS             complement(3617..3886)
                     /locus_tag="PXD41_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6288274.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(3859..4536)
                     /locus_tag="PXD41_000719"
     CDS             complement(3859..4536)
                     /locus_tag="PXD41_000719"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6288275.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(4638..4895)
                     /gene="rpmA"
                     /locus_tag="PXD41_000720"
     CDS             complement(4638..4895)
                     /gene="rpmA"
                     /locus_tag="PXD41_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL6288276.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(4916..5227)
                     /gene="rplU"
                     /locus_tag="PXD41_000721"
     CDS             complement(4916..5227)
                     /gene="rplU"
                     /locus_tag="PXD41_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL6288277.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            5505..6503
                     /gene="ispB"
                     /locus_tag="PXD41_000722"
     CDS             5505..6503
                     /gene="ispB"
                     /locus_tag="PXD41_000722"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL6288278.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            6606..7352
                     /locus_tag="PXD41_000723"
     CDS             6606..7352
                     /locus_tag="PXD41_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL6288279.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            7769..8704
                     /gene="fabD"
                     /locus_tag="PXD41_000724"
     CDS             7769..8704
                     /gene="fabD"
                     /locus_tag="PXD41_000724"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL6288280.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            8721..9185
                     /locus_tag="PXD41_000725"
     CDS             8721..9185
                     /locus_tag="PXD41_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288281.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            9206..9928
                     /gene="fabG"
                     /locus_tag="PXD41_000726"
     CDS             9206..9928
                     /gene="fabG"
                     /locus_tag="PXD41_000726"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6288282.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            10047..11345
                     /gene="brnQ"
                     /locus_tag="PXD41_000727"
     CDS             10047..11345
                     /gene="brnQ"
                     /locus_tag="PXD41_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL6288283.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            11391..12215
                     /gene="mutM"
                     /locus_tag="PXD41_000728"
     CDS             11391..12215
                     /gene="mutM"
                     /locus_tag="PXD41_000728"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL6288284.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(12298..12732)
                     /gene="dtd"
                     /locus_tag="PXD41_000729"
     CDS             complement(12298..12732)
                     /gene="dtd"
                     /locus_tag="PXD41_000729"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL6288285.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(12707..13552)
                     /locus_tag="PXD41_000730"
     CDS             complement(12707..13552)
                     /locus_tag="PXD41_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL6288286.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(13554..14792)
                     /gene="proA"
                     /locus_tag="PXD41_000731"
     CDS             complement(13554..14792)
                     /gene="proA"
                     /locus_tag="PXD41_000731"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL6288287.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            15076..16959
                     /gene="mutL"
                     /locus_tag="PXD41_000732"
     CDS             15076..16959
                     /gene="mutL"
                     /locus_tag="PXD41_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL6288288.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(16978..17247)
                     /locus_tag="PXD41_000733"
     CDS             complement(16978..17247)
                     /locus_tag="PXD41_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6288289.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(17234..17500)
                     /locus_tag="PXD41_000734"
     CDS             complement(17234..17500)
                     /locus_tag="PXD41_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6288290.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
BASE COUNT         5201 a         3884 c         3615 g         4828 t
ORIGIN      
        1 aatttgaggt tcttatgctt tatgcagaat ttttactttt attagccttt ttatatgcag
       61 gtagccgtta cggtggcatc ggtttaggtg tggtttccgg catcggctta tttgttgaag
      121 tgttcttctt aggaatgccg ctttccgctc cgccaattag cgtgatgctc gtgattttgg
      181 ctgtagttac ttgtgcctcc attctagaag ccgctggcgg tttgaaattt atgttgcaag
      241 ttgccgaacg cattttgcgt agcaacccaa aacgtattac ctttcttggc ccacttgtca
      301 cttatctgat gaccttaatg ctcggcacag ggcattcggt ttactctatt atgccgatta
      361 tcggtgatat tgccttaaaa aataaaattc gcccggaacg cccgatggca gcagcctctg
      421 ttgcttcaca attaggtatt accggtagcc cactttctgc tgcagttgcc tattacttaa
      481 ccgaaatcgt taaattaccg ggctttgaag gggtgacttt attgaatgta gtcggcgtaa
      541 ccatcaccgc aaccttctgt ggtgtgattg cgatgtcatt atatagctta cgtcgtggta
      601 aagagttgga agacgatcct gagtatcaac gccgtatgca agaccctgag ctacgcaaac
      661 aaatcgagca aacgagtgca acgtctttag acgaaaaact accggcaagt gcgaaaaact
      721 cggtttatct gttcctagcc gctattgcaa ccattgtgat tattgcaatg attccggcta
      781 ttaaaccaac ggttgctgct acaggaaaag ttgccggtat ggatcaaatc attcaaatcg
      841 tgatgctaac tttcgggggt ttaatcttaa ttttaactaa aaccgacccg aaaaaagtac
      901 caaacggcat cgttttcaaa tccggtatgg tagcaaccat tgcgattttc gggattgctt
      961 ggatgagtga tacttacttc acccatgcaa tgccagcgtt caaagaaggg gtaacagaaa
     1021 tggttcgagc ccaaccttgg acattcgcct tcgccttgtt tgcggtatct gtagtagtaa
     1081 acagccaagc cgtaaccgca aaaatgttat taccggtagg cattgcaatg ggcttgcctg
     1141 ctccattatt agttggttta atgccggcaa cttatgctta cttctttatt ccgaattatc
     1201 cgtctgatat cgcaaccgtt aactttgacg taaccggtac aactaaaatc ggtaaatatt
     1261 acttcaacca cagctttatg gctccgggtt tagttggcgt aattactgcc tgtattgtcg
     1321 gtatcgccgt tgcaaatgtg ctaatttaat tttaacaaaa aaacaagcgg tcagattaag
     1381 taaatttttt accaaatctg accgcttgat tatttactgc aaaaccaatt aggctttgtt
     1441 aaagagtttt gcatctaacg agtattttcc gccaccgata aaaatatagg ttaagaataa
     1501 taccgaatac acgcctgcta attcaccgcc gtttaataaa ggtaatagca cattgccttg
     1561 agctccgtga gcaataaaga acgcgtatgc catcatacct gaaaggataa acgctgtttg
     1621 gcgggtaaat agacctaaaa taaagaaaat tccgcccaca atttccaaaa taccgcctac
     1681 accataaatg gaggcaaggg gtacactgcc gtttccgttg gtcatcgaca ttggaaattc
     1741 aaaaaatttc gctgtgccgt gtaataaaaa catataaccg gcaacaacac gggtgattaa
     1801 aaacgctaaa ggttgtaaat ttgttaaagt agagttcatt tgctttcctt aaaataaatt
     1861 gtgatataaa ggtcaattga ttgaggcagg cattctattt taaaaaccta tacttcacaa
     1921 tccagccgtc atgaaataga ttatttacca ttaataaaca attaggctct cgctaacacc
     1981 caaacctgaa tttctactac tccagctttg agtaactcgg cacaaattac atttaaggtg
     2041 gaacctgtgg tgagcacatc atcaacaatc gccactcgtt tataggcttt taacggttga
     2101 tagaaaaatg ccccacgcag atttttccgc cgttcagcag cggtcaattc tctttgtgag
     2161 acggttgctc tcacacgttg taaactctgg gtatccagcg gaatctgtaa ccacttcgat
     2221 aaccaatcac acaataattc gctttgatta aaccctcttt tccaatgtct gtgccaaaaa
     2281 agtggtacag gcataatcac ttcaggcaag ctcagaacct gttccctttg agcttgtttg
     2341 attgccagca gcaattgtcg ggcaagggct tgatcccacc aatattgctg ctggaactta
     2401 aattgatgta cccaatgtga aagtggcgct cggtattcat ttaccctcac taatttatgc
     2461 cacttcggtt catttttcaa acaatagcca caagcgtttc gaaactccac cgcactcatt
     2521 ccacaatgac gacaataagg ggttggtttt agcaattttt ggcaatggct gcaaatgcct
     2581 tgcacgccaa tagcgagtgg atgattacaa tgaaagcaac ggaagccgaa taaattcaca
     2641 tttcctcctt ttatttgcag attatcaaat ttagccttat tttttccggc tatttttgtg
     2701 acatcgctcg aaaaaagagt aaaatctcat tatcagtaaa taaaaaggaa accgagatga
     2761 aatccctcca aaaaccgatc aaaattgtct ttttcgatat tgatgacacc ctctatgtaa
     2821 aacataaagc ctatattcca aaatcaatta ccgagcaggt attacctcgt ttaaaagcca
     2881 aaggcattat tccggccatt gccaccggca gaaatcacgg ctgttttcct gaagctctca
     2941 aaccttattt aaaccctgaa atcggttttg agctgtttgt taccattaac gggcaatata
     3001 atttctataa agatcaaata attagtgatt attcgttaag ccgtgagcaa attgaacgta
     3061 ttatcgaaaa agcgaatgct ttgggtattc tgtatgcctt tattacgcca atgacgattg
     3121 cagtttccga aaccaatccg attgtgcacg aagcggtttt accgatcaca ccgaattatt
     3181 tgatcgatcc acactactac gaaaaagaga aaattgtgca aatgttactg ttctacaccg
     3241 aagagcagaa acaagcggtc gaaaatagtg gcatttttgc aaatgattta aaagaggctc
     3301 gctggcaccc caatgcggta gatattctgc gaaaagaaaa ttcgaaagct cgtggcattc
     3361 aagatgtatt agcaaccttg aatattgaga ttgaaagtgc gatggcattt ggcgatggta
     3421 ttaacgactt ggaaatgctc ccgaccgtag gtgttggtgt ggcaatgggt aatggcgtgc
     3481 cggaattaaa agcggtggca gatttcatca ccaagccgct tgaggaagac ggcattctat
     3541 acgctcttga aactcttgag gtgatttaaa agcaagcggt tgtaagtttt tctccattta
     3601 caaccgcttg tagtttctaa ttacgcctaa atagcttatc gcctgcaatc gctaaaatcg
     3661 ccccactgac gaccaccaac gccccaagat aactgatcca attcatatcc ggcttggcaa
     3721 aaatatgcgg ataaaaatag tagctaaggt tggaaaagat catcgtaaaa atcggcaaca
     3781 tcgtggttac aatgctaacc tttgaagtat cccaatgatt caacgcctca ccgtatgaac
     3841 cgtagccaat taaggtgttc aacagcaata aataaagcaa ccccacagaa aaccatcctc
     3901 aagattgcct aactgtgccg gtgaggcaaa cggtaacatc agcagagaac agccgatgta
     3961 aataataaac agcacttgct gagagttaaa tttcgctaat aataattttt gagccacgcc
     4021 gtatagcacc caaatcaagc tggctccggc actcaataac actccgagag cgtaggtgtt
     4081 gagctgtaaa atttcagcaa atttatcgtt aaaaaatgcg acaagccctg caatcaataa
     4141 cacaaatcca atcttttgaa acaagccgaa cttttcctta aacaataata cgcctagtag
     4201 aatcatcgaa aatggagcta actgccacaa tacttggtta atggtgggcg aaacatagtg
     4261 tagagcctct gcaaacaaaa agaaatttgc cgacagacca cacaccccta acaaaattaa
     4321 accgagttct tttttgctac aagcggtcaa tttgggtaaa cgttttgcaa atcctagaat
     4381 cagcaatagc cctactgatg ccacaacgaa cctaacccaa actaaagttt gggcatctat
     4441 cactttcaat acttgctggg cggcaatcgg tagcgttccc caggtcattg ctgcggttaa
     4501 tgcaagtgaa aagccaagta aggggcgttg tttcatcgtg gaaattcctt tttctattct
     4561 atgtttctat attttagaaa gattgagata caaaaaaacc ccgccattgg cgaggtctct
     4621 tattgatttt gaaatgatta gtcagcaatg atgcttacat atttacggct tttctcgcct
     4681 ttcacttcaa atttaacttt accgtcagca gttgcaaata aagtgtggtc tttacccata
     4741 cctacatttg aacctgcgtg gaatttagta ccacgttgac gaacgataat gctacctgct
     4801 aatacagatt caccaccgaa acgtttaaca ccaaggcgtt tagcttcaga atcacgaccg
     4861 ttacgagttg aaccaccagc ttttttagtt gccatcttct agatctcctc tgaaattatg
     4921 cttgaatccc agtgattttc acttctgtga accactgacg atgaccttgt tgtttacggc
     4981 tgtgtttacg acgacggaac ttaacgattt taactttctc gccacgacct tgtgctacaa
     5041 cttcagccac tacttttgca cctgctacaa ccggtgcacc gattttaaca tcttcaccgt
     5101 taacgaccat taacactgag tcaaattcaa ctttctcacc agttgcaagt tcaagttttt
     5161 ctaaacgaac tacttgacct tcacttactc ggtgttgttt gccgccactt tggaaaactg
     5221 cgtacatatt tactccgcta tgtgccaact gcttttgctt ttaggcacta aattaattca
     5281 taaaaatagg gttgcaattc tacggaaaaa gattcgaaag agcaagagcg attttgagaa
     5341 ttttttgaaa tttgcaaaaa atggtaaaaa tactaccgct tgtttcaact gcgactaaaa
     5401 aacaatagac tgctccgatt ttacaacaaa atcataattc ttttttgaac acaggctaaa
     5461 ttaaggtaga atctactcaa ttttcgtctt actttatgga ttcgatggct gtgcaacttt
     5521 tttctttaga acaaattcaa gcccttgcga atgaagatat gcaagcggta aatgccgaaa
     5581 ttttagctca acttaattcc gaagtgctac tgattaacca gctcggacat tatatcatcg
     5641 caggcggtgg gaaacgtatt cgcccgttaa ttgcggtgct tgcggctcgt gccttgggtt
     5701 atcgtggtaa aaagcatatc acggcggctg cttttattga gtttgtgcat actgctacac
     5761 ttttgcacga tgatgtagtc gatgaatccg atatgcgtcg tggcagacca accgcaaacg
     5821 cccattttgg caatgcggct agtgtattgg taggggattt catctatacc cgttcgttcc
     5881 agatgatgac ggatttagac tctctgcgtg tgttaaaagt gatgtctgcc gccaccaatg
     5941 cgttggcaga aggggaagtt cagcaattaa tgaacgtgaa cgacccaaac accactgaag
     6001 cgaactatat gcgggtcatt tacaataaaa ccgcccgctt gtttgaagcc gccactcaat
     6061 gcgtggcgat tgcggctgat gcttctgagg aaattgaaac cgcattaaaa aattacggtt
     6121 gctacttagg cacggcattc cagctgattg acgatatttt agactactcc gctcaaagcg
     6181 aaagtttagg caaaaacgta ggcgatgact ttgtggaagg taagccaacc ttgccattgc
     6241 tccacgcaat gcacgctgcc gacaaagcag gcaaaactac tcaagcagag ctgattcgca
     6301 atgctatcga aaacggcggc gaattggaac aaattccaca agtattggca attatgcaag
     6361 aacatcaatc tctggattat gccatgcaaa aagcccgtga agaagcccaa aaagcggtgg
     6421 attcattagg ggttttaccg gaaagcgagt acaaacaagc cttggtttca ttggcgtatt
     6481 tatcggtgga tcgctcttat taatttgcaa aaaatcatat aaatttaacc acttgtaggg
     6541 gcaaatgata tttgccccat aacctataat tcttttgggc aaatgttatt tgccccaaca
     6601 taacaatgac tgaacaaaac caacgacccc aagaacatat tgaaagcgta cgagcgagac
     6661 gccgtgctca aaatcagaaa aaaggcccga atgccccgtt tgtgcgtgag aaattaacgc
     6721 tgccaaacgg acataacaaa ttactgctgc actcttgctg tgccccttgc tcgggtgagg
     6781 taatggaggc tattcacgcc tccggcattg agtttacgat ctatttttat aacccgaaca
     6841 ttcacccgct gaaagagtat ttgatccgca aggaagagaa tattcgcttt gccgaaaagt
     6901 ggggtattcc gtttatcgat ttagacgatg actacgaaaa cgaccgcaaa gagtggttca
     6961 aaaaagccaa aggaatggaa tgggagccgg aacgaggcat tcgttgcaca atgtgctttg
     7021 atatgcggtt tgaaaaagca gcggaatacg ctcacaacaa cggtttccct gtatttacca
     7081 gttgcttagg catttcccga tggaaagata tgaaccaaat caacgactgt ggtcaccgtg
     7141 cagcagccaa atttgatgac gtggtttact gggactacaa ctggcgtaaa ggcggcggct
     7201 cacaacgaat gatcgaaatc agcaaacgtg aacgtttcta ccagcaagaa tactgcggtt
     7261 gcgtctattc gttaagagat agcaacaaat ggcggttgga aacagggcgt cagcggattg
     7321 aaatcggtaa gctctattac tcacccgatt aaatgttact tttctttgct tcgccaaaga
     7381 aaagtaacca aaagaaaggc gacccgaact tcgcttagtt acgatttcct taacggaaaa
     7441 tttgtaaact cgctacgctc aaacagtaca aattttccta gaaatcgcaa gtcgctcaga
     7501 cgggacaagc ggtacattat tcaaaatttt ttacaaaata tagtgatgta ctcttccctt
     7561 ctgaaccgcc cgaacgtgtt tgaattggta ggaaaattta ctctgagcga agcgaatgta
     7621 aattttccgt gaaaccaatt caaactaagt gaggataagc ggtgaagtag gggtgtttct
     7681 ttggttactt tctttgcaca tgcaaagaaa gtaacgaaaa ctcagatata gatttcaact
     7741 taaaaattta cagaaggaat aataacaaat gtcaaaattc gctatggttt tccccggtca
     7801 aggctcacaa gcggttggaa tgcttgccga ccttgcgcca caatatccaa tcgtggaaga
     7861 aaccttcaaa caagcaagtg atgtgcttgg ctatgactta tgggatttag tgcaaaacgg
     7921 tactgccgaa gagttagggc aaacccaccg cactcaacct gcgttgcttg cctcaagcgt
     7981 ggcacttttc cgcatttggc aacaaaaatt ccctgagcaa aaaccagccg tgatggcagg
     8041 gcatagtttg ggtgaatact cagcgttggt gtgtgccggt gtgttggatt tccaagatgc
     8101 gattaaattg gtcgagttgc gtggtcgtgc aatgcaagaa gccgtgccgg caggcagcgg
     8161 tgcgatgttt gcgattatcg gtttagataa cgaaagcatt attaaagcgt gcgagcaagc
     8221 agcaagcgag accggtgaaa ttgtctctgc ggtaaacttt aacagcccgg ggcaagttgt
     8281 gattgccggc acaaaagcag cggcagaaaa agcaggagaa ttgtgtaaag ccgcaggtgc
     8341 aaaacgtgcg ttaccattag cggtgagcgt accttcacac tgtgctttaa tgaaaccggc
     8401 ggcagaaaaa ttagccgaag ccttgcaaaa tattgagcta aatcaaccgc ttgtccctgt
     8461 tatcaacaac gtggatgtgg cagtggaaac agatgccgat accattcgta atgcacttgt
     8521 tcgccaactt tacagccctg ttcgttggac ggaaaccgtt gaaaaaatgg cacaagatgg
     8581 catcactact ttatatgaaa tcgggccaaa caaagtccta accggtttag caggtcgtat
     8641 tgtaaaagaa ttatcagcca aagcggtaaa tgatgttgcc agctttgagg cggttgaggc
     8701 ttaattttcg ggagcgtaaa atgagtaaag aaaccctatt tatgctaata agtgcattga
     8761 ttgccttagt gattttacct ttagcttata ctgttggtat cgctaaagaa acattaggcg
     8821 gaaatatggg aatgttatcc attgctgccg gttgctcatt tttagcctat tttttaagtc
     8881 taaacccgaa aattcgccac gcctttatcg gaggttcagc tattacagct gctgctattc
     8941 aagcttgggt attatatggt gtgctattaa gcgaaaatga ccccaaaagt gcggtcgttt
     9001 tatttcaaat ttatctgttt agtagtttag ggccactgtt tttttcagct atttgggcat
     9061 ttactcgccc acgttggatt taccctaaac aaggtagtgc ggtgaaatat gccttatttg
     9121 gtggcttaac gaccgtgata aactacttga ttaccctttt tattttttat attctgacgt
     9181 tataacgtca tactaaggag aatttatgag caaaatcgca ttagttacag gggcaacccg
     9241 tggaatcggc aaagcgattg ccgaagaatt ggtagcaaaa ggctacatcg tagtcggcac
     9301 cgcaacctct gaaaaagggg cggaatctat ttcagcttat ttaggcgaga acggcaaagg
     9361 cttagtgcta aatgttgccg atgcagagtc gattgagagc gtattaaagc agatcaaaga
     9421 gacctttggc gatgtggacg tgttagtcaa taacgccggc attacccgtg acggcttatt
     9481 aatgcgtatg aaagatgagg attggttcga catcattcaa actaacttaa cttcggttta
     9541 tcgtttatcc aaagcggtat tacgcccgat gatgaaaaaa ggcggacgca ttatcacgat
     9601 cggttctgtg gtcggctcaa tgggcaaccc ggggcaaacc aactactgtg ctgccaaagc
     9661 aggcttagtt ggtttttcta aatctttagc gaaagaagta gcaagccgcg gcattacggt
     9721 aaacgtggtt gctccgggct ttatcgccac tgatatgacc gatgagctaa ccgaagatca
     9781 gaaaaatgcg attttaagcc aaattcctgc cggtgaactc ggttctccac aagatattgc
     9841 caaagcagtc gctttcttag ccagcgatga tgcccgttat atcaacggtg aaaccattca
     9901 cgttaatggc ggtttatata tgagctaatc cgctacaagc ggtctttttt caaccgagct
     9961 ttgtaaattc agagttcggt tttgttattt gttattttgt gttatcacct gctttatagg
    10021 tataggtgaa aaagtgtgaa tatgttatga ctagaaatac attagtagta ggctttttat
    10081 tgtttgctat tttctttggt gccggcaatc tgattttccc accaaaatta ggttatgaaa
    10141 gtagtacaga atttttctca gccatttcag gctttgtttt aactggagta gggcttcctc
    10201 tactcggtat tatcgtcagt gcattttata atggaggcta taaatctgca ttagacaaaa
    10261 tccacccttg gttttcttta gcattcctaa cttctatcta tttagcgatc ggtccattct
    10321 ttgccggtcc gcgcacggca gcaactgcct atgaaatggc gataatgccg tttttagggg
    10381 attccagcca agtgtcaatg ttaattttta ccttaattta ctttgccttt accctatggt
    10441 tagcgctaaa tccaaataaa atggttgatc gcattggtgc aattcttacc ccgatcttgc
    10501 ttataaccat cattggatta gttattcgag ccggctttat tttagatacc gatccacaaa
    10561 tcactacgcc taatacgaat gaacaatctt acttttttaa aggtatggtt gatggctatc
    10621 taactatgga tgcacttgct tcgttagcct attcggtaat tgtattaaat gctattcgtg
    10681 ggaaaggggt aagccaagcc gcattacaac gccaaacagt ttctgccggc ttagttgcag
    10741 cagttgctct agctgtaatt tatatttcat tgggttggat tggtaataat atgccaatta
    10801 gtgcaaacac actttcgatg ttatcagaaa gaaaattgga tctaggtact tacattctta
    10861 acactgtgac tacccaagcc ttcggtgaac tcggacgtag tgtcttagga gtgattgttt
    10921 cacttgcctg tttaaccact gctgtcggtt tagccgtatc agtcagtgaa tactttaatg
    10981 aaattttccc gaaaatttca tataaagttt atgctatctt atttactgtg attagtttta
    11041 ctgttgctaa ccaaggatta aaagaagtta ttagcaaatc cattccggta ttattagttc
    11101 tctacccaat agcaatgact gtcattttaa tgttgctgat taatttagtg attaaacttc
    11161 cgttgtctgc acaacgtcta tcactcctat tagtgacaat tgtagcgata gcttcagttg
    11221 ccggtgtcgg gtttaccgaa aacttgcctc taaaatccta ctcgatggaa tggctacctt
    11281 tcgctatcat tggagctatt attggagcaa ttatccaccc gcttaccggt cgaaagcata
    11341 aataaagtaa aggcagtgag cattcactgc ctctttttta ggagagaata atgcctgaat
    11401 tacccgaagt tgaaaccagc gttcgtggtg tatcgcccta tttggttggg caaactattg
    11461 aacaaatcat cgttcgtcag ccaaagttac gttggacggt gagtcctgaa ttaagccaaa
    11521 tggcaggggc aaaaattacc gcagtagaaa gacgtgccaa atatctgatt atccgcaccg
    11581 acaaaggcga tattttggtg catctgggaa tgtccggctc gctcgggatt ttgcaagaac
    11641 gtcaacaaaa agaaattggc aaacacgacc acgtcgatct tattacccaa aacggcacaa
    11701 ttttacgcta taacgaccct cgcaaattcg gctgttggct atgggcagaa aaagcagaag
    11761 atcacgaact gttgcgtaaa ctcgggcctg aaccgctttc aaacgatttc acagcagatt
    11821 acttatttgc aaaaagccgc aaaaaaacga ccgcttgtaa aacctttatt atgaccaatg
    11881 aagtggttgt tggggtgggg aatatctatg cgtgcgaaag tttatttatg gcaggcattc
    11941 accctgagct tgcagcacaa aacctgacta aaaaacagtg cgaacgttta gtaaaaacca
    12001 tcaaagaagt gctgactaaa gcgattattc aaggcggcac aacactgaaa gattttatcc
    12061 aacctgacgg caaaccaggc tattttgctc aagtgttgca agtgtatgga agaaaagggg
    12121 aaacctgtaa tgactgcgga aagccgattg aaactaaagt aatcgggcaa cgtaatacct
    12181 atttttgccc gaagtgtcag agattgccga agtaatctaa taataaactc tctccccctg
    12241 agggagagag acagcttgtt gaaacgttaa gtgaaacaag cagagagagg gtaaaaccta
    12301 aacctgcaac caaaaggtaa caggcccgtc attttgtagg ctgacttgca tatcggctgc
    12361 aaattgcccg gtttgggtat gaatcttagt ggcggcttgt tgatgaaagt aggcatacaa
    12421 acgttcggca tcaaccgggc ttgctccttt tgagaaacta ggacgcaagc ctttattggt
    12481 atccgccgca agggtaaact gtgaaaccac taacaaactg ccacctgctt gctgtacgtt
    12541 taagttcatt ttcccctcgc tatccgaaaa cacccgataa ttcagcactt tttccagtag
    12601 cttatctgct ttcgcttcat catcgtcttt ttccacaccg agcagcacca acaaaccgct
    12661 tgcaatttcg ccaacgactt gcccttcaac ctccactttt gcgaatttaa cccgctgaat
    12721 taagcctatc attaatgctc cccttgtctg tttccatttc gtctaaaacc gccgcaaatt
    12781 gcccgccaag taataccacc tgccaactta actgaatcca taacagcata atcggtaaca
    12841 ccgctaatgc tccataaatt gcctgataag acgggaaggc agtaatatac caaataaagg
    12901 ctttcttccc taaagtaaag aaaatcgctg ccattaatgc cccgatagca gcgtgttgaa
    12961 attttacctt tctaattgga ataaatttat acactaaggt aaaaagtagc caaattagca
    13021 aaaacggcat caattctaat aaatgctgcc cgagcgataa cgctccattt ccattaaaaa
    13081 tagaaagcga cattacatag gtgctaatcg caatgctagc accggcaagc agcgggccaa
    13141 acagcaaaat gagaaagtaa agcaagaaag agaaccacat cggacgctga cgattatcgt
    13201 gccaaatggt attcaatgcc tcatcaatac tcttaatcag cataatagta accacaaata
    13261 agccgataaa acttaccagc cccatttgtt tggcattact gacaaacaac tcaatgtatt
    13321 ccgacaccat ctcgctcgca ctcggggcaa agttgtcata aatgaacgct tttaactgct
    13381 cgtttgcttc gtggaaaatc ggaaaaaagg taaaaatgga aaacagcacg acaataaacg
    13441 gcactatcgc cagcattgtg ctataagtga gataaccggc tgaaatcgca atgttatttt
    13501 cattgtaacg cttggcaaag agcttaataa atctccacag tcgatttaac atcttaacct
    13561 ctcaccaaat aatcgccttc acacacccat ttgtaggtgg ttaaggcttc taatcccatc
    13621 gggcctcgtg cgtgtaattt ctgcgtgcta actgccactt ctgcccctaa accaaactca
    13681 ccaccatcgg taaaacgggt gctggcatta atataaaccg ccgcggcatc aacctgttgt
    13741 acaaattgac gggcaagttg ataatcggag gttaaaatcc cctctgaatg ctgcgaacca
    13801 taatggcgga tatgctctac cgcttgttgc aggtcattca ccaccaccac gttaagatca
    13861 agcgataacc actcttggct caattttgct tgatcaagcg gttcaattcc ttcaattttt
    13921 tgcaaatcgt tactgtgaat agtaacgcca agctgttgca ttttggcgac caatttcggc
    13981 aaaaattcca ccgcaatcgc tttttccacc aacagcgttt ccagcgtatt gcaagtgctt
    14041 gggcgttgcg ttttggcatt agcgatgacc tctagagatt tctcctgatc cgctgttttt
    14101 tccacaaaca gatgacaaac cccaatcccc cccacaatca ccggaatggt cgaattttct
    14161 ttacagaatt gatgtaaacc tgcaccgcct cgagggatca ccatatcaat gtagcgatct
    14221 agcttcaata gttccaataa taaggctcga tccggatccg tcaccgcttg cactgccaat
    14281 ttcggcaagc cggctttttc taacgcatct tgcactacat caaccaacac agcattggta
    14341 aatttggtct ctttaccgcc acgcaaaatc actgcattgc cggtttttag gcataatgat
    14401 gccacatcaa tggtcacatt cgggcgagct tcgtaaatgg ttaaaatcac cccgagcggc
    14461 acacgctggc gttcgatttt caaaccgctg tctaacacgc caccgtccat cacctgcccc
    14521 accggatccg ctaatttggc aacatttcgc acatcgttag caatgtcttt tagccgatct
    14581 tcattcaata ataagcggtc aataatcgcc aatgaaatcc cttgtgcttg agcaaattca
    14641 atatctttgg cattagcgta taaaatttct tctgcacgtt gctcaaggct atcggcaatc
    14701 gtgagtaagg cttggttttt ctgtaggttg ccaaattgag ccagctcaaa actagcttgt
    14761 ttggcttgct gggcaagttc tatcatctgc ataaattagg tctcatttaa tcaatattct
    14821 ccataatcta acacgttctt ttatgtgaag aaatatgcaa aagccaagaa aattggataa
    14881 aatgggggaa ttttaaaaca ttacgcaatt cccctctccc tgatttttct cctgaacgga
    14941 gaaaaatcta tccctctcct acaaggggag agggtagaat ttaactctct ccccttgtgg
    15001 gagagagacc gcctacagat tcgttcagaa tctgtaggca gagagagggg taaaaacaga
    15061 taaaacttaa acaaaatgat aaacactacc cctaaacagc taatccacat tcttccgcct
    15121 caactggcaa accaaattgc tgccggcgag gtggtggaac gccctgcgtc tgtggtaaag
    15181 gagctagtgg aaaacagttt agatgccgga gccaatacta ttcaaatcga cattgaaaaa
    15241 ggcggctctc agcttatccg cattcgagat aacggttgtg gtatcagcaa gcaagattta
    15301 ccgctggcac ttgctcgcca cgctacgagc aaaatcagca gcttggaaga tttagaagcc
    15361 attttaagtt taggctttcg gggcgaagca ttggcaagta tcagctcggt ttcacgttta
    15421 acactgacct ctcgtaccgc agagcaaacc gaagcatggc aagcctatgc acaagggcgg
    15481 gaaatggcgg tggaaattca gcctgcctca cacccgattg gcacaaccat tgaagtagca
    15541 aatctgtttt ttaacacacc ggcacggcgt aaatttctac gcaccgataa aaccgaattt
    15601 gcccatattg acgaggtggt tcgccgcatt gcccttgcca agccgaatat cagtttcagc
    15661 ttaagccata atggtaaaat cgtccgccaa tatcgcaaag tgcaagacaa ttcggtagag
    15721 cagcaacaaa aacgggttgc agccatttgc ggtgatgagt ttattcaaca ttcaacttat
    15781 attgacaggc aacacgggga tctgcaccta cacggctggg ttggctcacc ggctcttgcc
    15841 cgtctgcaaa acgacctttg ctacagctat gtgaacgggc gaatgatgcg ggataaaacc
    15901 atcaatcacg ccattcgcca agcctacggc gacagcattg caagtggtta ctatccggct
    15961 tttgtgatct ttttggattt agatccgaca atggttgatg taaacgttca cccggctaaa
    16021 cacgaggtgc gctttcatca aggaagactg gtacacgact ttattttgca aggcgtactc
    16081 aacagcctgc aacaaaccca acctacgctt gaactgcgaa atgaagtgaa cgagccgtta
    16141 ccgagctatg ttcaagacac taaccgccaa gctgcggggc aaaatatttt tgtgtcgcaa
    16201 accgctccac aagcggccga atttacgcaa aaaaatgcaa gtcgatcaag ctatacgcct
    16261 aaatttgaac gaagcaacag tgtgagttcg tccgctcaaa aatggtataa ggaattggtt
    16321 ggtggcgatt tgcaccaaac aacgccaact atcaaaacgc aaagcacgct tgttgagcca
    16381 aaaacagaac cccaaactga acataaaaca gaagccgttt cgcaaaaaat tacgcaaatt
    16441 gcaccgcttg caagccacca ttcacaagcc ttagcgattg taaaaaacca agcggtgtta
    16501 attaaagaag aggaaaattt ttacctgctt ccactggcaa cattagccga gcttaaactc
    16561 aagctacaac tggaaaaagg gcaatctcaa gcgttgttga tcccactgaa tctcagttta
    16621 gatcaacaac aaaccgaacg ctggcaacaa accaaagaag aactaactaa gcttggcttt
    16681 tcgatcagcg aaaaacagtg gcaagcccaa acacggctca cagtgctttc cgtaccacag
    16741 gctgtcagag aacaaaacct gcaacagctt ttatttgctc tgttcaacca aacacaagcg
    16801 gtcaatttag ccgaattttt tgcaaaaaaa tgcgaaaaac ccaccgcttg tacgctaagt
    16861 gacgtgattg ctctactctc agaaattgag ctttatgcca atgggaaaaa agagctggag
    16921 ggaataagga aggaagtgga tttttccaag tttttatagt ctaaagggca atacccttta
    16981 gccaaataaa tgagagtggc tgccaattcg cagcagctct agcttatcat cttccacttt
    17041 tcgatagata agaaccaaat caggttggat atggcaatcc ctaaagcctt tccattcgcc
    17101 ggttaaagcg tgatcgcagt atttctcagg taatggcttg tcattaatca gaaaatacaa
    17161 cgcctcaatt aatgaagagg ataaagactc aaccgcacat tttttatagt cacgtttaaa
    17221 agcattacta tactcaatct ctcgcattga gttgctccat taaatccgca atactatttg
    17281 ctgaatgtag cttttcctcg ccattcttaa cagcccttaa tacttctgct gtctcaaaat
    17341 taggctgata atcaaactga aaacgttttt ctgttgcgat tttcgctaat gtcattcgca
    17401 tcacatcaga gacagtcaag ccgataccgg ctaacacctc acttgcttgc tctttaattt
    17461 cagggctgat tcttacgctt actaatgcac tatttgccat caaaaactcc ttttgtatat
    17521 caaatgat
//
LOCUS       DANLXB010000034        17475 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.035, whole genome shotgun sequence.
ACCESSION   DANLXB010000034 DANLXB010000000
VERSION     DANLXB010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17475
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXD41_000735"
     CDS             complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXD41_000735"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL6288291.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXD41_000736"
     CDS             complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXD41_000736"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL6288292.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3019..3516)
                     /locus_tag="PXD41_000737"
     CDS             complement(3019..3516)
                     /locus_tag="PXD41_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL6288293.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(3541..4563)
                     /locus_tag="PXD41_000738"
     CDS             complement(3541..4563)
                     /locus_tag="PXD41_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6288294.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(4603..6033)
                     /locus_tag="PXD41_000739"
     CDS             complement(4603..6033)
                     /locus_tag="PXD41_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL6288295.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6138..7061)
                     /locus_tag="PXD41_000740"
     CDS             complement(6138..7061)
                     /locus_tag="PXD41_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL6288296.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXD41_000741"
     CDS             complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXD41_000741"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL6288297.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXD41_000742"
     CDS             complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXD41_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL6288298.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
     gene            complement(9407..11128)
                     /gene="ptsI"
                     /locus_tag="PXD41_000743"
     CDS             complement(9407..11128)
                     /gene="ptsI"
                     /locus_tag="PXD41_000743"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL6288299.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     EFYQKLN"
     gene            complement(11250..11507)
                     /gene="ptsH"
                     /locus_tag="PXD41_000744"
     CDS             complement(11250..11507)
                     /gene="ptsH"
                     /locus_tag="PXD41_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL6288300.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            11768..13342
                     /gene="thiP"
                     /locus_tag="PXD41_000745"
     CDS             11768..13342
                     /gene="thiP"
                     /locus_tag="PXD41_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL6288301.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            13339..13989
                     /gene="thiQ"
                     /locus_tag="PXD41_000746"
     CDS             13339..13989
                     /gene="thiQ"
                     /locus_tag="PXD41_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL6288302.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            14296..15710
                     /locus_tag="PXD41_000747"
                     /pseudo
     CDS             14296..15710
                     /locus_tag="PXD41_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(15826..16629)
                     /gene="map"
                     /locus_tag="PXD41_000748"
     CDS             complement(15826..16629)
                     /gene="map"
                     /locus_tag="PXD41_000748"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL6288303.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(16715..17380)
                     /locus_tag="PXD41_000749"
     CDS             complement(16715..17380)
                     /locus_tag="PXD41_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL6288304.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
BASE COUNT         4977 a         3869 c         3269 g         5360 t
ORIGIN      
        1 gtacattttc gagaaaattt tcgctaagcc caccatcttg attaggcttt ctagatatat
       61 gccaaaatcc agataaacga taatacccta cctgagataa ttttttctct gcatagcttt
      121 tatcatttat gagcattcct ctagatatga gtagttctac taattcgtga tactctttat
      181 gtggttttgt aggcataaaa ttgaaggcat tttaagaaag gcaaggacgt agcttgacac
      241 tctaagtcga ttacatttag taaacctcag ggacaggggc tacgccacga ttgcaaggga
      301 ttatacattt tagctgatta aagtcaaaag gtttcatcaa ttaataatag caatactgta
      361 cttttaagga ctataattgc aaaaaactga taaaatttta ccgcttgtta ctgcttacgg
      421 gccgctttta caacaccttt tacacttaat agcttacgga gaatcagctc agaatgctct
      481 ttattttcca cagaaatttg tactctcact tgatagatat ttccttctct tgcctcgcta
      541 ttaatgctgc caatgttgct atttaatttg gcaagcgttg atgtgatccc cgcgagtacc
      601 cctggttcat tgataatatc cagtacgatt tccgtttcaa attgaatcgc tttttctttg
      661 gcaatttccc attccacagg taaataatta ctcggctctg ttgcgtaatc tttcacatta
      721 ccacaacaag cattgtggat tgccaatcct ttacctgaac tgacgtgagc aataatttca
      781 tcacccggta taggtaagca acagtttgca aaactgataa ggcggttctc aatcccttca
      841 attttaagcg gttgattatt ttctggatta ccatcagtat caattaatag tggctcccct
      901 aataagcgtt gagcgataac attactcatt tggttaccta gaccaatttc agccagtagc
      961 tcatcaaagc ttgataaacg tagctcgtct aatacggatt gaatagtttc tgaacacaat
     1021 tcatcaagtg agcgtaaatt cattgcccga actagctgtc tacgcccaag tgcaatcgcc
     1081 tcatcgtgct gctgattttt aagcgattga cgaattttag ccctcgcctt accacttact
     1141 acaaaattta accacgatgc atttgggcgc ttaccttgct cggtaataat ttccaccgtc
     1201 tgtcctgttc gtagcggttc tgaaagtgga tacggattgc gatcaaccat cgcacctaca
     1261 caacgatccc caatgcctga atgcaccgca taggcaaagt caatagcggt agcattcgcc
     1321 ggcaattcaa caatacgccc tttcggggta aagacgaaaa tatcgtcaga gaacagatcc
     1381 gatttaacgc tatcaataaa ttctgctgta ttgccggcac tgttttgcaa ttcaacaata
     1441 ctttgtagcc attgctgggc tttgagttga acggtcgtgt tatggtgcga ctcgccctct
     1501 ttgtaacgcc agtgagctgt tacccccata tccgccattt tgtccatatc ttcggtgcga
     1561 atctgtacct ccaccggtac accgtgcggg ccaatcatcg aagtgtgtaa agattgatag
     1621 ccgttcggtt ttggcacggc aatataatct ttcacccgtt tcggacgagg cttatacagt
     1681 gcgtgcatct gccctaatac acggtaacaa ttatctacat tatcaaccac tactcggaaa
     1741 gcataaatat ctaaaatcga atgaaaatgt tgatctttct ggcgcatttt ttggtaaatg
     1801 gaatagagat gtttttcacg cccatacaca cgggcttcaa tttgcacctc ttctaaccga
     1861 ccacgaatat catcggcaat gcgttgaatt agctctttac gatgtcctct ggcactggca
     1921 atagccattt tcagtacccg ataacgttgc gggtgcattg cctcgaagcc taaatcttcc
     1981 aactcgtttt taatatgctc tattcccaag cgatgtgcca acgggctata aatctctaag
     2041 gtttctttcg ctatacggcg gcgtttatcc ggacgcaaag caccaagcgt acgcatatta
     2101 tgggttcggt cggcaagttt aattaacaca acccgaatgt ctttggtcat tgccaaaatc
     2161 attttacgga agtttgccac ttctgcctct tggcgggtgc ggaattttaa tttatccagc
     2221 ttagaaacgc cttgtacaat atctgctacg ctctgtccaa attccgccgc cagttcttct
     2281 tcggtgtaag gtgtatcttc aatcacatcg tgcaacaaag ccgcaatcac cgcttcttga
     2341 tcgagcttca tttccgcaat aatcgacgcc actgctaccg ggtgagtaat atagggctca
     2401 ccgctagagc gtgtttgtcc ctcgtgagca tcacgggcta tcacataagc acgttttaca
     2461 cgctcaatct gctcgggtgg caaatagcct tgaataattc gatctaaagg ttcaaaaaga
     2521 tacacgttat acctcaacaa cagaaataaa aatggacaac gaatttgcaa attttgagga
     2581 aaatcctacc gcttgcagac tcaattgtcc attctctatt tacgaaaaat aaaattacgc
     2641 ttcgttgctc atttcagtta aaaatgaaat cgcctcttgc tccgccgctt cttgcttaat
     2701 agagtcgtga ttttccagct gatccataat gtcagttgta attaaacctt cttcaatttc
     2761 acgtaatgca atcacggtcg gcttatcgtt ttcttcaggc acaagtggct cacgggtgtg
     2821 aagttgtaat tgtcttgcac gacgtgcagc aattaagatt aaatcaaaac ggttgccaat
     2881 tttctccgct gcttcttgta cggttacacg agccataaat ttactccaaa gatttattcg
     2941 gttttattca taaaaagatt gcgaattata cagaaattcc gccaattccg caatgaaagc
     3001 gggctaaatt cacaaaattt atttggtatt cagtaaaatc gccaataatt cagcctcaac
     3061 ctctttgccg aattttccca ttctaaaatc ggcttttagt tgctcgaatt gctcagggtt
     3121 cgctgccatt ttatctttta aaaattgcgg aaattcagat aacactaatt ctgttttgcc
     3181 attacgaata tcaaaaatag ttggaatttt ttgcgcagaa atgaccgctt gttgctgttc
     3241 atcgctgtca aaatgtttgc gttcctgatt atctttgcga gccacatatt tcaccttaat
     3301 gttaggattg agctttgcca ttcgctggaa ataagccaca atttccacac aatcggggca
     3361 atatggctct gccattacca gccagtcccc ttgcacgcca acagcttgca gtttttcttc
     3421 cgtatctgtg gaaagcttga cctccacata cacttctaat tgattttcac gatcttcatc
     3481 gctgttaaat tctaaatatt cgtaaaaatg tgccataatt ttgtcttttc ctatctcatc
     3541 ttaaatggat ttacgccata aaatttcaca atcaacttta acgtcatcta ttttctgttg
     3601 cgctaacttt tgctgaatta attcaaaggt acgttcggca atttgttggt ggtcttgctt
     3661 aattgaatga atatgaaaag gtagtgcatt cagtaaatgg tgatcatcaa aggttgctaa
     3721 atgcagttct tgagtcaata atttatccat ttgttggtgt tcagtcagat agcgcattac
     3781 tccctcaagt agggtaaaag aggctgtgaa taccgcttct gggagcctgc caagtttttc
     3841 aactatctga gcgaacattt gatagcccga ttccggctga tagtcttgat gcagaaccca
     3901 attttcatca agtgccaaat gtgactgctc caaaccttca cggaagcctt ttaaacgatt
     3961 ttgacttggc gagagtgaaa gttgtccacc taagtaaaaa aactctttta agtgataagc
     4021 ccgtacaata ttttccacca acatactgat actttgtgta tcattactgg tgatagaagg
     4081 gatattcaac ccagaaatat agcggtctag ctgtaacatt ggggtatatt gtgccgcatt
     4141 ttgataataa gtcggctcat tatgtgtcgg agcagtaatc agtaaatcta cctgcctgtc
     4201 taataaacgc tctatcgctt tcttctcacc ttcaaaggta tcatccgagc aagcgatcac
     4261 tagctgtaac ccgttttcac ggcataattt ctctaaggtt cttgaggtca gagcaaagcc
     4321 ataattcgtt aaatcgggaa tgactaaacc gatcacattc gtgcgttgag cctgtaatga
     4381 ttttgcatat acattagcac gataaccgtg ttttttagcg atctctttca ctttttggca
     4441 ggtttcggat ttgattctaa aatcattgcc ccgcccattt aaaatcatac tgactgttgt
     4501 tttagatacg ccgctgagtt ccgcaatatc actgagcgtt aggcgttttt tagtcacact
     4561 tatctccttt tagcataaaa atgggcatta ctgcccattg ctttattcta cgctaattgg
     4621 caatactttt gctactttca cttgaatcgg acgagagctt tttacgacat tttcacgctt
     4681 agcgataaaa aagcgtgaag tcagcacttt ttccccgccg tttacgaaaa tttccaccac
     4741 agaacggtca aagaaaatct cgattgtctc taattgttca attttgcaat gacgaaccga
     4801 gccaaatttt tccatcaatt ctgtttgttc ggtttggcta cgatctaagc tcaacacccc
     4861 attttcaaaa cgtaagctga gcttttgccc ctgttcattg ctgaaaaaat ccaacacaag
     4921 cggttgattt tccacagaaa tttgcaagta ggcagtatcc aaattctcga ttgcaaaatt
     4981 ttctgacatt tcgaccgctt gtaattcgcc tacattcacg attgggtttt gtatcacttt
     5041 gccgttttgc agggaaagtt tacgaggcaa tgtcagcatt gaatgccact gatatttatc
     5101 agttgggtaa gtgagatcag gcaagccgac ccagccaaac aaaatgcgat cggaattttc
     5161 caccgtttgc ggtgcgtaaa agtcaaagcc gtagtccagc tcttcaatat gctctgcccg
     5221 taatctgttg ccgtttagct cgccaagtgc gtaagtggcg tggtagttat tttggaattg
     5281 atggctttca cgcagtttgc cttgtggcga ccacacaaac agatctttac caccaagtga
     5341 gaacagatcc ggacactccc acataaacac attgctgtta tcaaaattgt ggacttccag
     5401 ttctgcgatt aaacggggtg tggcatttaa atcgtccatt tcataaatta acgccgtgcc
     5461 ggtcaagttt tcacgctgag cccccaacac aaaacgaatt ttgccctctg cggtaaggta
     5521 aggtttcggg tcacgcacgt gttcggtgta gcctgccggt gcttggtcga taatgcaacg
     5581 cttttccaat aatttgcccg atttatcaaa aatcgcgata ttttggtgag gaatgcgggc
     5641 attatctgat gggcggcgtg tattgccggt gtaaaaagcg acaatcttat cttgccataa
     5701 aatcgcccca cctgaataac agccgtggga ttcaaacagc tcatcgggaa tcagcaaatc
     5761 ccctttactg aacgtttgaa aatcggtagt gatgaaatgc tgccaatgtt tcattccatg
     5821 taatgcccca taaggaaacc attgggcgaa aatatggtat ttttcaccat cgaaaatcaa
     5881 gccgtttggg tcattaaata agcctgtttc gggagcgaga tgataggttg ggtaaaaatc
     5941 gggatcagat aaaacggttt ggcgaagagc gtttaattcg ccctcgcttt gtgcgtgcag
     6001 gcttttgtat ttgccgttgt tgaaaatgtg catagagtgt tcctgtcatt tcagaaatta
     6061 cgatggtgca agcgtccacg cttgtaccct tttgtaaaaa atgaggcaca agcgtggaca
     6121 cttgcgccat cattacatta ttccgccaaa aatgcgtcta actccgcttt attcggtaat
     6181 gccgacatcg ccccttttgc tgtggtggct aacgcaccgg aagcatttgc tttgcggatc
     6241 acttcaacta acacagtttc atcgtgccaa ttcggcgttt gagcaagacc ggctaataat
     6301 ccgctgacaa aggcatctcc ggcaccggtg gtatccacag gtttcaaggc tttgccggca
     6361 acgacttggc tttttccgtt gaaatggtag attgcaccgt ctttgccaag ggtgataata
     6421 atcaatttct ccggatactg agcggtaata gcttgtgtgg cttgttccaa agtttctgtc
     6481 tcggttaata aggtcagctc ttcttcggaa aatttgagaa tatccgccat cgccaccaca
     6541 gaatttacca ctgttttcat ttcatcaagg ctcttccaga gcgattcacg caagtttgga
     6601 tcaaacgaaa catagccacc cgcctttttc actcggcgaa tcccttcaat ggtagtggaa
     6661 cgggatgggt cgttaatcaa ggcaatagaa cagcagtgta agaaatcacc ttggttaaat
     6721 tcaggtaaat cgccgatttc taaaaattgg tcggcactcg gatttaccat aaaagtaaaa
     6781 ctacgctcac cgttatctaa gccaacaatc acggtggaag tgcggtgctg agcgtctaaa
     6841 atcatctgtt tggtgcaaac attttctgcc tgtaacactt ctcgcataaa tttacccaga
     6901 gggtcgttac ccacacgccc gataaatcct gcctcaaccc ctaaacgaga aacgcctact
     6961 gcaacattcg ccggagcacc accggcacat tttaaatagt gatgttcgcc gtcgggaatt
     7021 aaatccacca ccgcatcgcc tgttacccaa atcttactca tctcatacac ctttaattag
     7081 tcacaaaaca ccaagctaaa acgatttagc atttattcga ttatatacta aaagaccgct
     7141 tgtacatacc tacaagcggt cattttttct ttaattttta cagattaacc acgtatttac
     7201 ctacacctaa atcatcttct ttacgagtgc gggcaatcac gctttctgcc gattccacca
     7261 cacgtaatcc catttggtct tcggtacgaa tcacttcgcc acggagtgag ttggtataaa
     7321 catcggtgat tttcacatcg acaaatttgc caatcatatc cggtgtgcca acaaagttta
     7381 ctacacggtt agtttcggtt ctgccggtta attccatcaa gtctttctta gacgggcctt
     7441 caaccaaaat gcgttgttct gtaccgagca ttgcacggct aaattgcatt gcttggtggt
     7501 tgatgcgttg ttgtaaacgg gataatcgct cttttttctc atcatcggag acattatcag
     7561 gcagatctgc cgctggtgta cccggtcgag ccgagtagat aaagctaaag ctcatatcaa
     7621 agttcacttg ctcgatcact ttcattgttt gctcgaaatc ctctgcggtt tcgcccggga
     7681 agcctacaat aaagtccgaa ctaatttgaa tctcaggtcg aacagcacgc aatttacgga
     7741 taatcgcttt gtattccaac gctgtgtggt tacgcttcat cattgttaat acacggtctg
     7801 aaccactttg aatcggtaaa tgtaagaaac tgaccaattc aggtgtatca cgataaactt
     7861 cgataatatc atcggtaaat tcaatcgggt ggctggtggt gtaacgtaag cggtcaatac
     7921 cgtcaatcgc tgccactaag cgtaataatt cggcaaaggt acaaatgccg ccatcaaaag
     7981 tttcaccacg gtaagcattt acgttttgac cgagtaaatt aacctcacgc acaccttgtg
     8041 ccgcaagttg ggcgatttca aataatacgt catccaccgg gcgggaaacc tcttcgccac
     8101 gagtgtaagg cacaacgcag aacgaacaat atttattgca gccttccata attgaaacga
     8161 atgctgtagg gccttcggct tttggctccg gcaagcggtc aaatttttca atttccggga
     8221 aagaaatatc gacaatcgag cttttaccgc cacggatttg gttgatcatt tcaggcaaac
     8281 ggtgcaaagt ttgtggcccg aaaacaatat ctacataagg ggcacgatca cggatatgct
     8341 ccccttcttg tgaagccaca caaccgccaa caccgataat caggttcggt ttatcttttt
     8401 tccagttttt ccaacgcccg agttgcgaga atactttttc ttgtgctttt tcacggatag
     8461 aacaagtgtt tagcagcaac acgtctgcat cttcagggtt ttcagtcagt tcaaaaccgt
     8521 gagtagagtt taggagatcc gccatttttg atgagtcgta ctcattcatt tggcagcccc
     8581 aagtggtaat atgtaattta gccataacgt ttaaaattaa taaataattc aataacttag
     8641 aaaagaaaag cgtaaagcaa tttattattt ttgacttaaa ataaaccctt tacgcaaaat
     8701 ttgtggcgtt attttacctt gttgcctatt ttttatctat aaataatcgc catttatccg
     8761 attttaccta aaacaaaaaa gccacgatct tccatcgtgg cttccagcta agtaggaggt
     8821 attatttggt taaggttaaa accacgcttt caccggcaac aacttggcca tttaatttag
     8881 ataagttgct gatttcatcc atatttgaaa tcacgattgg tgttaatact gatttggctt
     8941 tgccttcaag tagagctaaa tcaaatttaa tgatcggctc gcccactttt acggtttgac
     9001 cttcctgtgc aaggcgagta aagccttcgc cttttaattc aacagtatca ataccgaagt
     9061 gaacaaataa ttccacgcct tcttcagatt caatcgaaaa agcgtggttg gtttcaaaaa
     9121 ttttgccgat agtcccattt actggagcaa cgatagtgtc tccactcggg cgaattgcca
     9181 caccgtcacc tacaattttt tcagagaaaa caacatcagg cacatcttca atatttacga
     9241 tttcacctgt taatggcgca tagattttga tttcttgact ctctttttgt tttgagccga
     9301 ataatttatc aaataaaccc atcttaaaat ctcccttaga tattagatac aaaattctcg
     9361 tacattttat acgagaattt tgtatttgta tgctaaataa ttaaaattag tttaatttct
     9421 gataaaactc atctactaag cgttcaatat ctgcagcagt tggctgagca agcgcctcat
     9481 cagctaatgc tttagcatcg gcaaaattaa ttgagcgaat gagtttttta acgtgtggca
     9541 cagagatacc gctcatacta aattcatcta atcccatacc gagcaacaac gcagttgcac
     9601 gcacgtcacc ggctaattca ccacacatac ctgtccattt gccttcagcg tgtgaagcat
     9661 caataacttg cttgattaag tttaagactg atgggcttaa tgggttatat aaatgagcaa
     9721 taatttcatt accacgatct accgcaagtg tatattgggt taagtcatta gtaccaatac
     9781 taaagaagtc ggcttctttt gcaagatgac gtgcatttac cgctgctgat ggggtttcca
     9841 ccataatacc tagttttaag ttctcatcaa aagcgtgacc ttctgcacgt aattgatctt
     9901 tcaattccgc aacgatggat tttaataaac ggatttcttc caccgaaata atcatcggga
     9961 acattaccgc taaattaccg aacgcagaag cacgtaatac cgcacgtaac tgagtatcta
    10021 aaatttcacg gcgggtgaaa ccgatacgca ccgcgcgcca acctaagaat gggttcattt
    10081 ctttcggtaa atcaaggtat ggtaactctt tatcacctcc gatatccatc gtacgcagaa
    10141 tgaccatttg accattcatt gcttcaacaa tctctttgta ggcttgaaat tgctcttctt
    10201 ctcccggtaa ttgagtacga tccataaaca aaaactcagt acggtataaa ccaaccgctt
    10261 caccaccgtt gcgtaataca ccttccacat cacggatagt accgatattc cctgccacat
    10321 caactttatg gccatctaat gtttgagcag gcaactcttt taatttggct aattcttctt
    10381 tttccgcatt taatttctct tgtaatgctt tgaaattagc gattttttct tccgatggat
    10441 ttaaatgtac ttcattgttc actgcatcta aaatcagaaa atcaccagtt ttaactaggg
    10501 aagtaacatt gttagtacca acaatggcag gaagctctag ggaacgagcc ataatagaag
    10561 tgtgagaagt acgaccaccg acatcggtaa taaagcctaa tactttatct aaatttaatt
    10621 gagctgtttc ggaaggggtt aagtcataag cgactaaaat aacttcatct tgaatatcac
    10681 caagatctac gatattcata tttaaaatat tgcgtaccaa gcggttacca atatcacgaa
    10741 tatcacctgc acgttctttt aaatattcat cgtcaatttc cgcaagcatt gaagcctgca
    10801 tctcaatcac tttacttgct gcaacatccg cagtcacaag attatcagta aggtaactca
    10861 aaatttcttc ttcaagctct tcatcttcta agatcatcaa gtggccttcg aaaatcgcct
    10921 ctttttcctc acctaatgta cggcgagctt tttctttaat cgcggttaat tgagcagctg
    10981 ctttttcgcg gcctgtaaag aattttgctt tttctgcctc aacttcgctt tcagtaattt
    11041 tgcgagtatt tagtacaatc ggctcttctt ttaaaaccaa tgcttttcca aatactgcac
    11101 caggggaagc tgcgatacct gtaatcataa ttgtgtcctt aatttaagat gatgtaaaaa
    11161 tcatctggat gttacatagc aaaacacttt attgtagctt attaagctac aataaagtga
    11221 cataaatctt aaatccgaga atagaaaaat tattctaaag taggaatcaa atcaactaag
    11281 aaatcaactg ctttttgctc atcttcgccg tccgcagaaa ttgtaattgt tgtgccttga
    11341 gtcaaaccta atgtttgtaa tttgaataag ctttttgcac ttgcactttt accacctgaa
    11401 gtcacagtga tatcagaagc aaaaccttta gctgctttta caaattcagc cgctgggcga
    11461 gtgtgtaaac catttggagc ggtaataaca acatcttttg agtacataaa atcttcctct
    11521 taaatttgaa agttaaaaaa atttgtttta atccatttat tttgcgcacg caactttact
    11581 acaaattcaa attaaaaaca cgctaaaaag cgcaaaaact cgtcgtatca ccctgctaaa
    11641 tagggtgttt tttaagctaa cttaaaaatc atttgtcgaa tatcaagatt ctagcacaca
    11701 cttaagcgga aatgttacaa taatttcgct accacttctt tcacttatat tctaaatttg
    11761 gagcaatatg cttagcacat taaccaaaac aaccgcatgg tttatctact ttagtattat
    11821 tgctctctat gtttttagtc tatgggcgtt aatggactat caccaaaatg ataccttatt
    11881 tgttttttcc gatataacgg ccacggtcgc ttatagccta cttcaagcca gcctctctgc
    11941 ggtaatttca ctatttttag gcagcctact ggcaagatct ttcttttatt tggactttaa
    12001 aggaaaaaat ttactctata aaaccatttc gtttatctgg gcattaccct cactagtaat
    12061 tatttttgcg gtaattggcg tatttggtaa ctcaggctgg ctagccaaac ttttccaaca
    12121 actcggttgg aattggcaat ttaatttata cggcttgcac ggcatcattt tggctcactg
    12181 cctgtttaac attccgtttg tgatgaaata ttataccgga gggcttcaat tgactccaag
    12241 cagtcgcttt cagcttgcgg ctcaattaaa cctaacaggt tggaattata tccaaattgt
    12301 ggaactaccg ataatcaaaa ctttgctgcc ttatatgttt atgactgttt ttctggtctg
    12361 ctttaccagt tttccaatcg tattaatgtt aggcggtagc ccaaaataca gcacgcttga
    12421 agttgccatt tatcaagcgg tcacttttga atttgatttt gcaaaagccc tcatcttaat
    12481 tggggtacaa tttgtagtgg gcattggctt acaattagta atgaattata tctcgacttc
    12541 tgcactcaaa aagctaaaac agcaacctaa ccgagtagaa atttggaaac caaagcctac
    12601 cggactggct aaactcggct tacaagcggt tatttttttg caaagttttg caataattct
    12661 accgcttgtc agcgtcattt gggcaggact aagcgtgtca aaactcagtg agcgtttgct
    12721 caaccctact ttatggcaag ctactcagta ttctttatac ttaagtttaa ttgcttctat
    12781 attcgtaatc acaatcagct atttgattgc acttgaagct cgccaattac tctatacaaa
    12841 agccaagctc agatatagca ttctcaccgc aatcacccta ttccccttac ttctgccgat
    12901 ctttttatta tcggttggtt tgtttatttt attaatgaat agtgaactct caagcgaggc
    12961 attactgcta ctggtcggga tatgcaacgg cttaacatta ctgccattta tttacccaat
    13021 gcttttctcc gcaatgtgga atagcctcac ctcgcacgac aaattagcac aaggacttgg
    13081 gctaaagggg cttcgccgtt ggtggattgt ggaaaaaaat caactaattc gaccgcttgt
    13141 taccgtattt gcgttagcaa tgtcatcgag cttaggcagt ttcaccgtca ttgctttttt
    13201 cggcaacgct gatttcagct cactccctta tttactctac caacaacttg gtagctatag
    13261 aaccgaagat gctgccgtta ccgcactcat tctgatgtta tttgcgttac taccattctt
    13321 attcagcaag gataaactat gatcgaactg gatctccatt tcacttacga acaaatgaat
    13381 atgcactttc agctttctgt caaaaaaggc gaacgtattg cagtggttgg cgaaagtggc
    13441 gcaggcaaaa gcacattact taatctaatt gccggttttg aaaaggcaga aagtcagcaa
    13501 agccagctgt ggctaaatca gaaaaatcat cttgataccg aagttgcaca acgtcctgtt
    13561 tcaatgctat tccaagataa caatattttc ccgcacttaa cggtagaaca aaacatcggc
    13621 ttagctttag taccaagttt gtcgctcaat ccgaaacaaa aagcacaggt taaacaaatt
    13681 gccacacaaa tggggattga aaccttcctt cagcgtcaag ccgatcagct atcgggcgga
    13741 caaaaacagc gagtggcatt agctcgtact ttgttgcggg ataagccgat tttattattg
    13801 gacgaaccct tctccgccct cgacccgcaa cgccgagccg aattacagca aatcgtgttt
    13861 gacatttgcc aaagcagaaa tctaaccctg ttaatggtaa ctcaccaact atccgaaagc
    13921 ctatttctat ttaatcgggt gataacggta gcagatgggg agattgtttc tgatctctcc
    13981 cctctttagc aaagcagatc tgctaggttc taaatgtagg gacgccacgc tggcgtacgc
    14041 aacgatgtca attccaacaa tctaacggtg aatgatgttc cgcacggata ctagcgttat
    14101 tcattttttt cagaactcgc cccctacttt agcaaagagg ggaactgtaa ctaatattac
    14161 ctccctattc cgctattctc ttccccaaaa tgtgatctac ttcacaaatt tggaaatatt
    14221 ttaaatcttc tcttttttag ctaaaccgat ttagttaaaa tgcaaccgat tattttttat
    14281 gaaaggtaaa ttcaaatgaa ctatccaaaa attgcagaac aaacgattgc aaaattaggt
    14341 ggcaaagaaa acattaccac acttgcccac tgtgcaaccc gtttacgctt aaccattgct
    14401 gatgaatcca aaattgataa agaggcgatt gaaaatattg aaggcgtgaa aggtcaattc
    14461 tctactcccg gtcaatacca aattattttt ggatcaggca cggtaaatga agtgtatgcc
    14521 caaatgcaaa aacaaatggg tatggcagat atgtccacct ctgaagtagc ggctgccggt
    14581 gcagcaaatc agccattact acaacgtttg gtaaaaggct tagccgatat tttcgtgccg
    14641 atcattccgg ctattgtggc tggcggtttg ttaatgggta ttcactcaat gctaacggca
    14701 gtcggtttct tctgggaagg tgaatctgtt gttagccgtt atccgaatat ttccgattta
    14761 gttgatttca tcaacactat tgctaacgca ccatttgtat tcttacctgt attactcggt
    14821 ttctcagcta cacgcaaatt tggcggtaat ccattcttag gtgcggcact tggtatgtta
    14881 ttggttcacc cggcacttgc agacggttgg aactatgcca aaaccttaat ggaaggtaac
    14941 atcaaatact ggaatatttt cggcttagaa attgaaaaag tgggttatca aggcacggtt
    15001 attccaacta tcgtttcggc ttgggtgtta gcaacccttg agaaaacttt ccgtaaattt
    15061 gtgccaagct atttagataa cttggtgacg ccaatgatgt cattatttat cgccggtatt
    15121 ttagctttca ctgtaatcgg accattgggt cgtgaagcag gttcagcgat ttcagcaggc
    15181 ttaacgtggt tatatgacag cttaggcttt atcggtggag caattttcgg tacattctac
    15241 gctccaatcg tgattaccgg tatgcaccaa acctttattg cggttgaaac ccaattatta
    15301 gctgaagtag cacaaaccgg cggtacattt atcttcccga ttgcagcaat gtctaacatt
    15361 gcacaaggtg cagcctgttt aggtgtagct tttgcaatga aagatgccaa agtgcgtggt
    15421 ttagccgtgc cgtcaggtat ttcagccctg ttaggtatca accggcaatg ttcggagtaa
    15481 atttacgcta ccgccaagcc tttattgcgg cgatgatcgg ttcaggttta gccagtgcat
    15541 ttatcgcttt ctttaatgtg aaagcaattg ccttaggtgc agccggtttc ttaggtattc
    15601 cgtcgattaa acctgacagc cttgcaatgt attctgtcgg tatggtaatt tcatttgtag
    15661 ttgcatttac catttcagcc atttgggtga aaaaagcaca agcgaaataa tcaaaaatag
    15721 atcacaaaaa agggattaag tgttagctta atcccttttg tttttaaacg ccttagctta
    15781 acaatgagtt tcgcaagcgg tcatttttcg ctaaaaattt gcaaattagc tgttgtgcat
    15841 aattcgagaa atacgccctt cggcaatctc ttcatcacga attgtcagca cttcacagcc
    15901 gtctttggta actacaattt gatgctcata ttgtgcggag tggctgcggt ctttggtttt
    15961 cactgtccaa ccgtcaccca ttaagcggac ttcttttttg ccggcattca ccattggctc
    16021 aatcgtaaac accattcctt cttttaacac tacaccgcca tcatcggtag cataatgcac
    16081 tacttgtggg tcgcaatgga attcagtacc aataccgtgt ccgcaatatt ctcgtactac
    16141 cgaaaagcct tctttttcca catatttttg aatcgctgta ccaatttctt ttaaacgcac
    16201 ccccgctttc acggtgcgaa tcccgacata aagggactct agcgtaaccg ccattaagcg
    16261 tttatcccgc acacttggct caccgactac atacatcatc gagttatcgc catagtagcc
    16321 atctttgata accgtcacat cgatgtttaa aatatcgcct tttttcagct ttttgtcatc
    16381 acttggaata ccgtgacaaa cgacctcatt taacgaaatg cacaccgatt ttgggaagcc
    16441 gtgatagccc aaactggctg aagttgcccc atttgccaaa atgtattcgt gacaaatttt
    16501 atctaattca ccagttgtta cgccctcttt cacataaggg gcgatcatta ctaaaacatc
    16561 tgaagccagt ttacaggcta ctcgtagttt ttgaatttct tcttcgtttc ttaatggaat
    16621 attattcatt acattgctct ctgctatatc tgccataaaa agtaagggga ttataccttt
    16681 tttcagcaca atccccaaac ctcagtttag atttctactt taaatcaagt ttcttcataa
    16741 tgaaatttaa tatcacacca taaagcggta gaaatagcag taggctcaca aagagtttaa
    16801 acgcataatc gaccgaacca atagtaaacc aatgctctgc catatattca tcgctacttt
    16861 tataaaaggc gatagcaaag aatacaaaag tatcgattaa agtaccaaaa atggttgaac
    16921 aggttggagc aagccaccaa cgcttacctt gtcttaaact attaaatact agaacgtcta
    16981 ataattgccc aactaaataa gctgcaaagc tagccagtgc aatacggaaa acaaaaaagt
    17041 tgaactcagt taatgcacta aagccttgaa attgggtttc aaagaataaa acggaaatca
    17101 catagcttat gacaagtgcc ggaaacatca caacaaaaat aatttttcta gcaagatctg
    17161 caccaaatac acgcacggtt aaatcggtcg ctaagaaaat aaatgggaat gttaacgttc
    17221 cccaagttgt cggaaagcta aattctgtta gtggtacttg aacttcaaag ctaatttgca
    17281 ctaaatagtt gctaattgcg atgataaaaa tatggaaaag tgaaagtaaa attagagaac
    17341 gacgtttgtt ctcatccgaa aaataagtag taaagttcat attgtatcct ttttcgttaa
    17401 atgaaaactt gaggtaaggg aactcaaggg ggcattattc tatacatttt cccataaaaa
    17461 tcaagctcat attat
//
LOCUS       DANLXB010000035        17302 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLXB010000035 DANLXB010000000
VERSION     DANLXB010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17302
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(89..691)
                     /locus_tag="PXD41_000750"
     CDS             complement(89..691)
                     /locus_tag="PXD41_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6288305.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(693..1712)
                     /gene="purR"
                     /locus_tag="PXD41_000751"
     CDS             complement(693..1712)
                     /gene="purR"
                     /locus_tag="PXD41_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL6288306.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(1848..2576)
                     /gene="cmoA"
                     /locus_tag="PXD41_000752"
     CDS             complement(1848..2576)
                     /gene="cmoA"
                     /locus_tag="PXD41_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL6288307.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(2586..3368)
                     /locus_tag="PXD41_000753"
     CDS             complement(2586..3368)
                     /locus_tag="PXD41_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6288308.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            3487..4053
                     /gene="seqA"
                     /locus_tag="PXD41_000754"
     CDS             3487..4053
                     /gene="seqA"
                     /locus_tag="PXD41_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL6288309.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            4063..5481
                     /gene="menE"
                     /locus_tag="PXD41_000755"
     CDS             4063..5481
                     /gene="menE"
                     /locus_tag="PXD41_000755"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL6288310.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            5474..8851
                     /gene="mscK"
                     /locus_tag="PXD41_000756"
     CDS             5474..8851
                     /gene="mscK"
                     /locus_tag="PXD41_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL6288311.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQLNLLINIELNQQQVQTISDALQQKLQQQSFWVKSNNPID
                     LEWFSKFVDITHYQFIDIGKKLNFSNWRDNLLPASILVGILLLLAIFINRQKDKIKQK
                     LHQINNRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFVAITYISFENPQEVWTW
                     GLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWIIALLLNTSIF
                     TNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKESKSILLTIV
                     KLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYRAFSISSRRL
                     AYRRLQEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIAVSEVKNQMLKLTDFVL
                     WIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLLTAILIIVVM
                     VVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTLGMSWSKLQW
                     LLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSKIRIRATTLV
                     DFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRLLLQVAEENP
                     KVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLFNEHNIDIAF
                     NQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            8854..9936
                     /gene="aroC"
                     /locus_tag="PXD41_000757"
     CDS             8854..9936
                     /gene="aroC"
                     /locus_tag="PXD41_000757"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL6288312.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            9955..10782
                     /gene="mepA"
                     /locus_tag="PXD41_000758"
     CDS             9955..10782
                     /gene="mepA"
                     /locus_tag="PXD41_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL6288313.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            10855..12774
                     /locus_tag="PXD41_000759"
     CDS             10855..12774
                     /locus_tag="PXD41_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6288314.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            12880..13206
                     /gene="secG"
                     /locus_tag="PXD41_000760"
     CDS             12880..13206
                     /gene="secG"
                     /locus_tag="PXD41_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL6288315.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAVASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            13231..13316
                     /locus_tag="PXD41_000761"
     tRNA            13231..13316
                     /locus_tag="PXD41_000761"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13265..13267,aa:Leu,seq:gag)
     gene            13519..14760
                     /locus_tag="PXD41_000762"
     CDS             13519..14760
                     /locus_tag="PXD41_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6288316.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(14919..16787)
                     /locus_tag="PXD41_000763"
     CDS             complement(14919..16787)
                     /locus_tag="PXD41_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL6288317.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(16798..17193)
                     /locus_tag="PXD41_000764"
     CDS             complement(16798..17193)
                     /locus_tag="PXD41_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288318.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         5349 a         3602 c         3360 g         4991 t
ORIGIN      
        1 aaaaacagtt ggtaatggat atttataatt attcttacca actgttttgc tattatatct
       61 ttttaagatg aaatgctcgt cttttgtttc actttttata ctgcttttta tttttatacc
      121 atttccagcc taaaaataga ataacaatgc ctaaaatggc aaaaatgagg tgctgcccat
      181 tagctacttg ttcttttagc caatccaaat tagatgcccc atagtcgcct aaataaaccc
      241 aaattggcac agagataata gcggcacaga aatcaactaa taaaaatttt acgaagctga
      301 cttttctggt aatacctgaa actaagtaaa ccaccgcgcg caagccaggt aaaaaacgag
      361 ccataaaaag tagtttccat ccttgttttt caaaacgttc ttgcacggtt gcaaaacgtt
      421 caggtgtcgc aacattcctg attaatggaa atttgagaat tttttcgcca tagattctac
      481 ctagccagta cattgtgcta tcgccaacta atactcctaa catactaaca accagcatcc
      541 aatgcacatt ggtgtagcct aatcctgaaa taacaccacc ggatactaac gtaatatctt
      601 caggaatcgg cacaccgaaa ccacaggcaa gtagcacaag aaaaacagcc caataaccat
      661 agctactaaa aaattcaatc aatgtttcca tattactcct taatgtttaa attccgaacc
      721 gatttacgtt tgaccaattc aggaaagaac tctaatactt taggctcttt tgcgttttcg
      781 ttatcttcaa tacgttctaa taataattct aatgctgccg agcctaagcg agattttgac
      841 tgatggattg tcgtaagagg cggtgcataa aagcgtgagc tatgcacgtt atcatacccg
      901 atcactgaaa tatcttgcgg cacattcagc cctttttcgg taatagctga aattgcccct
      961 agtgccattg agtcattaaa acaaaaaacc gcggttggta atttttcact gctcttaagc
     1021 aaattattca tacactcata ccccccctca ggttcaaaat cgccttcttg aatccattct
     1081 tcacgaatag acaaacccgc ctcagatagc gcttttttaa aaccttcaaa acgggttctt
     1141 gcaatttctt tatctctatt gccggtaatt acagcaatat cttgatgccc gttttcaatt
     1201 aaatgctgag tcgcaatata gccaccttca acaccgtgat ctaaaataat atcactgcgt
     1261 tcatcacttc gtccccaatc cataatcacc attgggatat tgctgttttc aaagatatca
     1321 aatgaattag ctgtatattc ggagcacatc accaaaatgc catcaacccg ttttttgatg
     1381 agcatatcta aatgattttg aattttctca agtttgtttt gagtattgca caaaaatagt
     1441 gaataccctt tgctatagca aaattcctct accgctaaca caatttcagc gaaaaacggt
     1501 gattcgctgg ttgtaatgat cataccgata gatttagtcg tattaatttt caaactccgc
     1561 gctacagcac taggagaata gttcagcgct ttaatagcct cccaaactgc ttttgtagtg
     1621 tcctctgcta caaagcgggt tttgtttata acgtgagaaa ccgttgtagt cgatacacca
     1681 gcatattttg cgacatcttt tatcgttgcc ataccttttt cctcctaaat aagtagtggt
     1741 gcattataac tgattctaac tgacttttat tataaagaaa tagatagaat gcaagcggtt
     1801 gctttttatc aagaatttgc aaaaaatttt acaaatatca ccgcttgtta ggctttaatt
     1861 gcaatcattg agccaaaatt aaagcattga aaccaaagtt caacttgtgt aaaaccagct
     1921 tcttgcagac gttttttatg ggtttcaata ctatctgttc gcatcacatt ttccaaagca
     1981 ttacgctttt ggctgacttc caattcactg tagccatttg ctcgtttgaa tgtgtgatga
     2041 aggtcgatca atagctcgtt catttcctca ctctcaaagg taaatttttc cgataacact
     2101 aaaatgccat tggaatttaa tccttgataa atcttctgta ataatgctag gcgatcttct
     2161 cttggtaaaa attgcaaggt gaaattaagt accaccattg aagcattttt aatttcaatg
     2221 tggcgaatat catcaagtaa aatcgtcacc gggatctcag agtgataagc acttaaatgg
     2281 gttttacaac gctcaaccat cggctgagaa ttatctaccc cgataatctg cacattcttc
     2341 gcattcacat tacggcgaat agataaaatc cctgcgcctc gtgaacaacc taaatcataa
     2401 acatttgaat tatctgtgac aaaacgctcc gccaacattc caatagcagt aataatattg
     2461 gaatagcccg gcacggagcg ttggatcata tccggaaaca cttcagcaac cgattcatca
     2521 aaagtaaaat cgcccaattt ctcaatcgga gcggaaaata atgtatctct ttgcattttt
     2581 ctcccttatt tttctaaaaa tttattgatt gctctcacaa cagttcctgt tttttctgcg
     2641 tgaacccaat gatcagcgtt tgccacaatg aaagatttgg cctgcggaaa ttgtgccaaa
     2701 atcgtttgtg tatgctctgc ttgaatataa tccgataatg cacctttaat aaacaaggtc
     2761 ggtttatcca caaatacctg ctgccacccc atcacattct gataattatc ttttagcgcc
     2821 tgtaaattaa aacggaaaga ttgctcgctt tgggcatcaa aagatttcaa cataaactgt
     2881 tgcacgcctt catctcgaat atattcagcc attatcgctt tagcttgctg acgattctgg
     2941 ggtttagctt ctttcaccgc aaataaggct gccataacct gctgatgccg attttgggta
     3001 taagtgaccg gggcaatatc aatcactacc aatttctcca ccagttcagg agcaaatgca
     3061 gccaatgcca tcgcactttt tccgcccatt gaatgcccaa ccacaatagc attttggata
     3121 tttaattctg tgagtaattg tgctaaatct tgtgcaatca aagcataatt catttcgtct
     3181 gaatgaaaag atcgcccgtg atttctgaga tcaaccatta aaatggagta acgttctgcg
     3241 aatggttttg ctattgcgcc taggttattt aaatctccaa acaatccatg taagaagatc
     3301 atcgtctgag cattagcatg attattcgaa ggttggtaat taaagtttaa ctgcgatttt
     3361 tctgtcatat aaatgtcatt gttcatataa attttcagcg atgttcctct ataaaaaaca
     3421 atagaaatgc gtataatagc aagcactatt aacgcattta atacccgcag atatttgagg
     3481 atcccgatga aacgaatcga aattgatgat gaattatatc agtatattgc aagccgtaca
     3541 caatctattg gtgaaactgc gtcagatata ttacgccgtc tattacgcct gccacaatcg
     3601 cctcagcctt ttgttttagt acaagaacac atgatcaacg agcttaaaga gcttgtcaaa
     3661 acgccttctc gtgctacgaa aaaaaatgaa tccaatgcag aaaaaaccgt tgaaaaattg
     3721 gaaaacattt taaattccga gcattttatg aacgaaaata aaaatgtagt gcgttttact
     3781 atgctattag ccgcattata tcgagcaaat ccggaggctt ttgctaaagc aaccgaaaaa
     3841 gtgcgtggta atgaacgtat ctacttttcg caaagtgaag ccgaaatttt agctactggg
     3901 agtggagtaa aagccaagca gatcccagat tcaccgtttt gggtaattac caataataat
     3961 accgcacgca agggacttat tctcaaaggc gtaatggaat ccatgaaagt accaagccag
     4021 ttaatcgaac gcattcaagc gctttttatc taattaattg aaatgctcat caattctact
     4081 cgctttccta cccaattttg ggctgctcat tcagcccaaa atgtggcgat tatttgggaa
     4141 aaaggaacat cagactatct taaccacctt ccatcaaaca tcacttggta tagtttgaat
     4201 cagttgattg cgcaagctat tttcgtgttg caacaacaag gtgctactcc gcacagtttg
     4261 attgcctatt gtggttctca tcggctcatt ggcttgctca cttattgtgc tagccttgct
     4321 ttgggggcta agattctaat gcttaaccct gctcaaacag caagtcaacg acaagcagtc
     4381 ttagatgaca atggtgttga gctcattatt aatgatgccg actttgcaaa attttcagca
     4441 aaaacgaccg cttgtaatgc cttccctacg attgattttg aaaaaccagc taccctaacc
     4501 ctaacctcag gctcaagcgg taaacctaaa gcagtggtgc attctatagc ggcccatctc
     4561 tatagtgccg aaggagtatg tgaattaatg gcatttgagc agccaaactc ttggctactg
     4621 agcttgcctc tgtttcacgt ttccggacaa ggcattattt ggcgttggtt atttaaaggt
     4681 gcaacactgt atgttcacga agacaaaagt gatttttttc tttcagcaca aaaagtgagc
     4741 catctctctt tagtccccac ccaattacaa cgctatttaa accaattaga ttctatggtc
     4801 agccaaaaat gtttactggg tggatctatg cttccagccg aattgattgc tcaagcacaa
     4861 caatctggga tgactacctt ttcaggctac ggaatgactg agatggcatc aaccatttgt
     4921 gcagtagaaa atgatttaaa cagtgttggt tttccgttaa aacatcggga actaaaatta
     4981 gaaaatggtg aaatttgggt aaaaggcaaa tcactcggct taggctattg gcaaaaaaat
     5041 gggcaaattc gaccgcttgt aaacacacaa ggctggtttg ccactaaaga tcgtggcgaa
     5101 tggaatcaca aaaaacagct tgtaataaaa ggacgattgg ataatatgtt tatttcagga
     5161 ggggaaaata tccaacctga ggaaattgaa caactgattt ttcgttctca gcttgtcgaa
     5221 cagattatcg tgttgccgat tgaagataag caatttggac atcgaccagt ggcgttctta
     5281 caattcaagc aatctgattc aaaaaatgaa ctccataaat taaaaatttg gctgtctgat
     5341 aaattagaaa gattcaaaca gcctgttgcc tattatttac tggatataga aaaataccaa
     5401 aaacaaggct taattaaact atcaagaaca caattacaac aagatttaaa actcaaagta
     5461 ttaaaggaaa tctatgttta gaccgatttt aaaaacattt gtgcttagtt taggcttaat
     5521 gctaaatagt tatgcattag ctgaattgcc aacccaacag gtagtgcaaa cgcagttaga
     5581 tagcgccaaa aaattagatc aagccgatgc ggataataag gcattggttc aaacacttga
     5641 agatacgctt gctttcttag cccaaattga taaacaaaaa gcagataatc aggcattgaa
     5701 taaatctatt caagattccc aaaaagcatt aaaaacaagc caacataatc ttgaaaaatt
     5761 aaaagaggtg actattgcaa gtgtcgataa tttaacacaa aaagcgacaa cagatttaca
     5821 aaaagagtta acctctacac aatctcagct ggaaacagta caacacgatt taagtattat
     5881 taataataat ttagttgcac aaaataccgc accggataag gctcaaacgg ccttaaccga
     5941 gatggttaaa cgtaaacagg aaattagtag ccaactttca gcgactaaca ttaaaaatga
     6001 actacagaca aagttagaag tagaattaga attaatagaa ttaaaaaaca cttacaatca
     6061 aatattactt ggtggcagcg aggatttatc tgcgctttac tctgctcaat tagatgaaaa
     6121 aaagcaagag cagcaaaatc tacaagcaga aattgcaaac ctgcagactg ctatcaacaa
     6181 taaaattgta gaagagtctc agaacaagct agatcaagca caagcggttc aaaatcagca
     6241 aaataatgca acgacgaacc cagttatctt gcgtgaattg gatataaata ccaaagtcac
     6301 acaagagttg ctaaaacaga ccaaagatat gacgcagtta tcacaagata atttgcgaat
     6361 caaaagtgtg ctagataact tacagcaaac ccaacgtaat attgaagaac aaatcagttc
     6421 tctgcaaggt acgttggtgc tttctcgtat tattaataag caaaaacaat cattaccaca
     6481 agatgaaatg atttccggac tatcaaaaca aattgcagat ttacgtgtac gtgtttttga
     6541 tatcactgaa tttaaagact cttttgcgga cataaatgct tatatcagcc gcatagagca
     6601 agatgaaaaa acaaccttta cgagtaaaga gaaagaacaa ctgagtaaaa ttttacagga
     6661 acgttctgac actttaactg agatgattaa atcattaaat aatcagctca atttattaat
     6721 caatattgaa ctaaaccagc aacaagtgca gaccattagt gatgcgttac agcaaaaact
     6781 gcaacagcaa agcttctggg ttaaaagtaa caaccccatt gatcttgaat ggtttagtaa
     6841 atttgtcgat attacccact atcaatttat tgatattgga aaaaaactca atttttcaaa
     6901 ttggcgggat aatttattac ctgcaagtat tttagtcgga attttattgc tattagccat
     6961 ctttattaat cgccaaaaag ataaaattaa acaaaaatta caccaaatta ataatcgact
     7021 aaaaattgtc gccacagata gccaatggaa cacccctctt gctatttttt ggacattagt
     7081 gctttgcctg ccaagtacac taatgttctt agccggattt gttgctatca cttatatttc
     7141 atttgaaaat cctcaggaag tctggacttg gggattaaaa atggcaattt attggctgta
     7201 ttttgccttt ttagtggcga tgctacgccc gcacggcata ggacatattc actttaatat
     7261 gccacaaaaa agtaatgaaa tcttccgtaa tattttaaaa cgttcggtat ggatcattgc
     7321 tttattactg aacacctcta tttttacaaa cttagagatg ggaatatctt acgacatgct
     7381 tggacaaaca atgactattt ttgtccttat attaatgatt tggatgattg taccggcatt
     7441 taggcaagct atttctacct atgagaatgt cacaacagaa gagaaaaaag aatctaaaag
     7501 tattttactc actattgtca aattagtgct actgcttgcc cctatcattc ttatcattct
     7561 gattgcattg ggctattact atactgcact ggtgatcatt gagcatttag tagattctta
     7621 ttttgcgatc attacttgga ttattattcg taatattctc tatcgagcat tctctatttc
     7681 atcacgccgt ctggcttaca gacgtttaca agaaaaaaga gaagcagctg aagccaaaac
     7741 acgagctaaa gcagaacaaa atgatgaaaa cccggacggt gtcgagcttc cttttgagct
     7801 aaaagaagac tctattgccg taagcgaagt caagaaccaa atgttgaaat taactgattt
     7861 tgtgctttgg attggcttat ttgtgctgct ttactgggtt tggtcggact taattactgt
     7921 tgcactctac ctagacggcg ttaccttatg gcaacaaagt gttacaacag aagccgggat
     7981 tgtaatggaa tccattaccc tgctgaattt actcactgct attctgatta ttgtggtaat
     8041 ggtggtactc attcggaact tatccggttt acttgaagcc ctgattttct cgcacttcaa
     8101 gttatcgcaa ggtacaccat acacaattac cacactctta acctatttga ttattgcgtt
     8161 aggggcaatc tttgcgttcg gtacattagg gatgtcttgg agcaagctcc aatggctact
     8221 aactgcactt tctgtcggtc tgggttttgg tatgcaagag atctttgcaa acttcgtttc
     8281 agggattatc atcttgtttg aacgtccaat gcggattggc gacaccatta ccatcggcac
     8341 ttacagcggt acggtttcca aaattcgtat tcgtgccaca accttagtcg attttgacgg
     8401 caaagaagtg attgtaccaa acaaagcatt cgtaaccgaa cgcttggtga actgggcatt
     8461 aagcagcacc gcaacccgca ttattgttca agtcggcgtg gcttacgggt ctgatttaga
     8521 attagtcaaa cggctgttat tacaagtggc ggaagaaaat ccgaaagtct tgaaagatcc
     8581 acaaccaagg gcttatttcc ttacctttgg tgcaagcact ttagatcacg aattaagagc
     8641 ctatgtgaac gatttatctg atcgtaaccc aactattgat gcactaaata cacgcatcca
     8701 ccagctcttt aatgaacata atattgatat tgcatttaac caattagatg tttatatcaa
     8761 aaacaacgat acacaagatg aaattaaagt agattcaaaa cgctttgagt ttgaacgacc
     8821 aaataacata acagcaaaag aaaaggaata acaatggcag gcaacagcat cggacaatta
     8881 tttaaagtga ccactttcgg cgaatctcac ggtattgcat taggctgtat cgtagatggc
     8941 gtaccgccga atatggcttt aagcgaagca gatttacagc cggatttaga ccgccgtaaa
     9001 cccggtactt cacgctacac cacgcctcgc cgtgaagatg atgaagtgca aattttatcg
     9061 ggagtctttg aaggcaaaac gacgggaaca agcattggtt taatcattaa aaacggtgac
     9121 caacgctcac aagactatgg cgacattgcc gaaaaattcc gcccggggca cgcagattat
     9181 acctatcagc aaaaatacgg cattcgagat taccgtggcg gtgggcgttc ttctgctcgg
     9241 gaaaccgcaa tgcgggttgc cgccggggcg attgccaaaa aatatttgcg tgagcaattt
     9301 ggcattgaag tgcgaggcta cctctcacaa atcggcaata tcaaaattga cccgaaaacc
     9361 gttgaaaata ttgaacaaat tgattggcac gcagtcaata gtaatccttt cttctgcccc
     9421 gatcccgttg cgattgaagg ctttgatgcc ttaattcgtg agctgaaaaa agagggcgat
     9481 tcggtggggg caaaattaac cgtgattgca gagcgtgtac ctgtagggtt aggcgaacct
     9541 gtgtttgacc gcctagatgc cgaccttgcc cacgccttaa tgtcgatcaa cgccgtgaaa
     9601 gcggtggaaa ttggcgatgg ttttgcagtt gtggaacaac gtggtagcca gcaccgagat
     9661 gagatgacgc cgcaaggctt tctctctaat cacgccggcg gaattttagg tggtattagc
     9721 tccggtcagc cgattatcgc tcatattgcg ttaaagccga cctcaagcat tactattccc
     9781 ggcagaagcg tgaacaaaaa caacgaagcc gttgaagtga tcactaaagg cagacacgac
     9841 ccctgtgtag gtattcgtgc tgtgccgatt gcagaagcga tgatggcgat tgtactactc
     9901 gaccatctgt taagatttaa ggctcaatgc cgttaaacac ataaaattgg aaaaatgaaa
     9961 ttattaaaaa cacttttagt ctcaagcctt gcttttacag ctaccgcact gaatgcaacg
    10021 caatgggaga aaatcaaaac tccggttcaa ggaaaagcac aatctatcgg cggttatagt
    10081 aacggctgta ttattggggc acagcccctt gcattaaaag gcgaaggcta ccaagtgatc
    10141 cgctcggctc gtaaccgcta ttacggacac ccacaactgc tcgattatct cactcactta
    10201 ggcaaaaaaa ccaaagctgc cggtgtgccg accattttaa tcggcgatat gggaatgcct
    10261 gccggtgggc gttttgcctc cggtcacgcc tcccatcaaa ccgggctgga tgctgatatt
    10321 tggtttaagt tcggaccgat ggacgatgaa accgcccgca atccagcagg gcttgccacc
    10381 attatggtaa accgtagtac cgagcgggtt gatgattcac tctggaatca acaccatact
    10441 aatttagtaa aacttgctgc aaccgatcct cgagtggatc gcatttttgt caatcctgcc
    10501 attaaagtga aactctgcca aaccgcaggc aatgatcgtg cttggttacg caaaattcgc
    10561 ccgtggtacg gacacgactc ccatttccac gtccgtttaa cctgcccggc tgatgccgca
    10621 agttgtgaaa atcaagccct tgtgcctgcc ggtgacggct gtggtgaaga gctttactcg
    10681 tggtttgagc cgaaagaagc ctccggcaca ccaaaagcca aagtgctacc cacagcgcct
    10741 gttcaatgtc agatgatttt atctgaacaa ggcttgaatt aattgcaaaa taacaacctt
    10801 ttttgaccgc ttgtcagccc acaagcggtt cattttctta aataatttac gattatgcgt
    10861 ttatttgttg ccgaaaaacc cagccttgcc cgagcgattg ccgatgtgtt accaaaaccc
    10921 cataccaaag gagatggctt tatccaatgc ggcgaacacg acactgttac ttggtgtatc
    10981 ggtcatttat tggaacaggc tgaacccgat gtctatgatg agcgtttcaa aatgtggcga
    11041 atggaacatt tgccgattgt gcctgaacaa tggaaattga ttcccaaaaa agagacgctc
    11101 aagcagttta aagtggtgga aaagctgatt aaaaaagccg atgttttagt caatgccgga
    11161 gacccggatc gagaagggca gctgttggtg gacgaagttt ttggctattt gaatttatct
    11221 gctgaacgca aaagccaaat tcagcgttgt ttggtaagcg atctcaaccc gaatgcggtg
    11281 agccgagcca ttgaaaaatt gcaaaaaaac agcgatttta taccgcttgc aacctctgct
    11341 ctcgcccgag ccagagcgga ttggctgtat ggtatcaata tgacccgagc ctatacccta
    11401 caggggcgtt gggcaggcta taaaggcgtg ttatcagtcg gacgtgtgca aacgccggta
    11461 ttagggctga ttgttcgccg agatctggag atcgagcatt tcgtgccaaa ggattatttt
    11521 gaggtgttgg cacagattgt cgtgccggaa acccaagagc gatttaaggc gcagtggcaa
    11581 ccgagcaaag cctgtgaaga ttatcaagat gaagatgggc gggtgctgtc tcgtccattg
    11641 gcagaaaatg tggtaaaacg gattaccgac cagccggcaa ccgtcaccga atatcaaaat
    11701 aaaattgaaa aagaaactgc accgctgcct tattctcttt cggtattaca aatggaagcc
    11761 gccggcagat atgggctatc cgcccaagcg gtgttggata tttgccaaaa gctgtatgaa
    11821 acccataaac taattaccta ccctcgttct gataatcggt atttgccgac cgaacatttc
    11881 aacgacagat ttaaagtgat ggcggcgatt gctcatcatt tacctgaata tcaacaaaaa
    11941 ccggaagtga ttgatgccac tattcgcaat cgttgctgga atgataaaga ggtggaagcc
    12001 caccacgcca ttattcccac tgcacggcaa gggacggtac atttaaccga aaatgaaaaa
    12061 agagtttatc aactcattgc ccgccaatat ctaatgcaat tctgccctga tgcggaatat
    12121 cgcaaaagta aaatcgggct tgaaattgca ggtggtagtt ttgtcgctca agcacgcaac
    12181 cttgtaattg ccggctggcg agcgttactg ggtaaagaag atagccttga cgatgcagag
    12241 ccactactac cgattgtcaa aaaagggcaa atcctccatt gtgaaaaagg ggaaattgtc
    12301 agcaaaaaaa cacaaccgcc ccgccacttt actgatcgca gtttgctttc agcaatgacc
    12361 gggatcgccc gttttgtaca agataaagaa ttgaaaaaaa tcttgcgtga aaccgatggt
    12421 ttaggcacgg aggcaacccg agccggtatt atcgaattgc tgtttaaacg tggtttttta
    12481 atccgtaaag ggaaaaatat ccacagtacc gaagccggca gaatattgat tcaagcactt
    12541 cccgactctg ctacccagcc ggatatgacc gctcattggg aaatgcagct gaatcaaatc
    12601 agcaaaaaag agaccagcta tcagcaattt atgtttgatc taaaccaaca gctcccacat
    12661 ttattacaaa gcccaaaccg ccaagtgttg caaaatttag cgaaaatcac accgcttgca
    12721 agcggcaata aacctcgtta ttttaaaaag cgaacacaaa ctgctgaaaa ttaaatcaag
    12781 caggtaaaaa ttactgttta gcacttgtca aacgggcgta aattctatat tatgcacgcc
    12841 attgcaaatt tcgcataaag aatacaagag aataaattaa tgttaattaa tgtactcact
    12901 attgtttatc ttgtagttgc cgtattactg atcgcatttg tattaatgca acaaggtaaa
    12961 ggcgctgatg caggtgcttc tttcggggcg gttgcttcag caacagtttt cggctcagca
    13021 ggatcagcaa attttttatc aagaacaact gctctacttg caacgatttt cttcgcaatt
    13081 agtttagtta tcggtaattt aagctcacac aatgtagcac cgaaaagcca atttgaagac
    13141 ttaagccaag ttgaacaaaa gcaagtagaa cctgtaaaaa tagaaaatag cgatatccct
    13201 caataatcgc ttaacattaa aaagaataaa gctctggtgg tggaattggt agacacgcca
    13261 tcttgagggg gtggtggaca cagtccgtgc gagttcaagt ctcgcccaga gcaccattca
    13321 actaaatttg gctcaacgga gctaaactaa aaaagcctta gaaagcctgt aaaatcaaca
    13381 tttacaggct tttttactat cttaactcaa cggctctaaa cgtttcctat cacaaatttt
    13441 agttacacgt ttagttacac gttttaaatc gtgttactat actttcaata atcgtgtaac
    13501 acttcgtagg tttaatttat ggctagaaca actaaagcat taaataaaac tcaaatagaa
    13561 aatgccaaat caaaggataa agaatatatt ttatccgatg gcgatggatt aaatcttaga
    13621 gttaaacctc tccctaaagg ctctaaaatt tggattttta actacactaa cccacaaact
    13681 aaaaacagaa caaatttaac tattgggcgt taccccttaa ttacacttgc ggaagctcgc
    13741 actatatgtg atggctaccg ctcgttaata gagaaaggca tagatccaca ggaagaaaaa
    13801 aagcggctgc aacaagaagc agaaaatcga gtaaatgata ctttccggaa tgtggccgaa
    13861 agctatttca atggtattta taaagagaaa gcaaaaaatc cgattactcg tgaaaagaat
    13921 tggataaggt tagaaaatca tattttcccc tatatcgggg ataaacacgt tgaagaaatc
    13981 aaagtaaaag cccttgttga tatttattct aaagtggcag ataaaagcaa cacattaaaa
    14041 aaactgcatc agcttgtatc tgctgtaatg gatcacgcca ttacgcaagg cattatagaa
    14101 agccataact gccgattagc agttaaaaac ttttatatca agccatctac gccaaatccc
    14161 actattgagc ttgaagaatt accgcagtta tttactgatt tacataatgc gaagttatca
    14221 aagcaaactt acgcccttgt ttgttggtcg ttcttgactg ctctacgccc aaatgaagcc
    14281 gttaatgctg aatggaaaga aatagacttt gagaaaaagc tatggaatat ccctaaagag
    14341 aagatgaaag gaaaagcaga taaaaaacgc cctcactctg tgccgttatc ctcccaagcg
    14401 ttaaagatat tagagatgat gaaaatgcac tctaattcta gcccttttgt ttttccaggt
    14461 cgttcatcaa atagtaaacc aatgagcaac gcaacggtaa attcaacatt aaaaaggaat
    14521 ggatataaag atagactaac cgcacacggt attcgggcat ttgtgaaaac atttctatct
    14581 tctcgcaaag tagatcgcca cgtttccgaa agtatattat cccatttatt agaaggtgga
    14641 gatgatttag aaaacacata caaccgatat gattttttag aagagcgtgt gccagtaatg
    14701 cagcttttag gtgattattg cgaacagtgc ggaatgaatt tagagttagt tcggggttag
    14761 ggaggtaaaa tatatgattt tagtcgtcac gtcatcactt ttcccacttt cccctttaaa
    14821 atcaaatagt taagtggtga tgactggttt taaagtcatc attaagtcat cacaaaaagg
    14881 tgatgaccta gaaaaaaaga ggggtttccc cctctttgct aattcaaaat atcactttga
    14941 aagtcatcaa aatttttgaa atgaacgttt gttcgttgcc ctttattcgt ctttcgtttt
    15001 gtgaaatcgt gcttattgcc gtgttgcttt actgcttgct caatacctac tacaaaagta
    15061 tttaagccta gttctagcac attcttagcc ttaacaaagg ctaaatatgc cggataaagg
    15121 tgcgttctta ttttgtcgtg tccaagcgtg ttgccagttc cgatataaag cccgtctgta
    15181 ttttctgttg tatatagata ctcgaaaaaa tccgttaatg ggtcagactg ctttttaatc
    15241 tccaacgcct ctaggctctc tttttgctcc tctaaggctc ttttagcttc gagtgggtca
    15301 gggaaggtat caagcacttt acggataatg ccccctatct ctaatgtaat tttatccata
    15361 aaatacggat cacgttcatt ttcaggcggt cttttattaa aacggaaatt gacaatccgc
    15421 ctatctatac cgccattccg ttctgtccat ttacaagggt cgttattgac gatcataatc
    15481 attgccgcaa ttcttgcgtt aaatgggtgc ttgttcttcg gatcgactcg caccatatca
    15541 ccgccagtaa tcgctttcaa tccgccacca tctccagcgt atttcgtttg ctcggaacag
    15601 ataatcagct ttttatcttc cagccctgcg attttgcgtt catcatcaaa gttttctagc
    15661 cttgctgaag ctgtgttctt ttctccagct aatagtgtcg caatgccagc aaataccgat
    15721 ttaccgcttc cgcctttccc tgttacttgg aagaatactt gccagttgta gcggtttgtt
    15781 aaaatcgcat agagagcggc tagaatgttc ttcgccttgt cttgcttgcc gtctgataca
    15841 aagttaagcc attgatcaaa gtgtggtgtt tcggctacgt tctcgtcata gctatgtgga
    15901 atataagccg ttagccagtt ttggcggtta acggttcttt gaacatttac cgaataaggt
    15961 gggtaagggg ttaaagtttc gggttgcccc ttgctattcc aaccaatcac cgtagccggt
    16021 tgtacttcca ttttttgaag cgtgccgaat ggtcgggttt tatcgttggc tgtcgtgcgt
    16081 ggataagcta agaagccttt agcttgtttt gtgcctgtac cgttggttaa atcggtttct
    16141 tcagtttcga caaaggattc tgaaatttct tcagtcagcc agcctagaat atctacacca
    16201 ccaaagtcta aaatctcttg cgtggttttc gggtaagcgt aaatattatg aacggcaatc
    16261 gttacttcat tcattttcgg ggtggcggtt tcggtgcgtg cttcgccttc accgatatga
    16321 tttaccgctg caccgccagc cgatactaat tttttatatt ctttgccttg ggtcagtttc
    16381 accacgttag caatttgtcg cataacagaa tcatctgtta ggcgtttcat tacttgcttg
    16441 tcaagttccg gaatcactga atagccaccg tctgcccctc catttgtatt cgtagcaagc
    16501 gaacgcaatt cgcctgtttt aatccagtgg cgaagctcgt catcagatac tttcacattt
    16561 gcggtttcaa cctgttgccc cggttggtta cgctgttcat cagtaatcgc ttcataacgt
    16621 gcgatttctt ttactaaatt ttcagcttgt gagcggagtt catcaaactt agccccttct
    16681 gcttcagttg ttgagcgttt ttcttcgtct gctttggtta aaattgaacg catttctgct
    16741 tcaatagccg ctttttgttg gcggagttct aaaagttttt taaacattgc cttatcctta
    16801 attcaaataa ttgatattgt agtgaagcgt tgctgttttc cacgctgatt cgttagcatc
    16861 ataatcatag ctatacttag ccagcacaca ttcgtccata ctgtggaatg tggcttgatt
    16921 catcacatca ctgatttttt gagccactaa atctaggtcg ttttcggttg aaaacattgg
    16981 taagtaaatg ccgattttca aataggcgtt gcattcgcca tcgcaaagcg tgagttggct
    17041 atattccgct tcatcaatga atacggcgat agccggtaat tcattttcta catcggtgaa
    17101 tacggctcgg ccgttatgga aatgttgaat gccttgaatg ttaccttgta ataagtcgat
    17161 aacttcttgg cggattgctt cgttagaaat cataaaaaag tcctcttaat taagaaggct
    17221 acaattagcc acagaacaat ataggcataa tttcaacgga gtaaataggg taaaatttaa
    17281 tcgtttagct acgtttgaac ac
//
LOCUS       DANLXB010000036        17212 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLXB010000036 DANLXB010000000
VERSION     DANLXB010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17212
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(6..491)
                     /locus_tag="PXD41_000765"
     CDS             complement(6..491)
                     /locus_tag="PXD41_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288319.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTLIALVVTAGIALWTVYSHLDTKVEARFSKIDDK
                     FVQVETNIKNLDIRLTKVESRLDNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFK
                     R"
     gene            complement(496..876)
                     /locus_tag="PXD41_000766"
     CDS             complement(496..876)
                     /locus_tag="PXD41_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288320.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
     gene            complement(927..1586)
                     /locus_tag="PXD41_000767"
     CDS             complement(927..1586)
                     /locus_tag="PXD41_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL6288321.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            1716..1922
                     /locus_tag="PXD41_000768"
     CDS             1716..1922
                     /locus_tag="PXD41_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6288322.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1943..2203
                     /locus_tag="PXD41_000769"
     CDS             1943..2203
                     /locus_tag="PXD41_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288323.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            2367..2537
                     /locus_tag="PXD41_000770"
     CDS             2367..2537
                     /locus_tag="PXD41_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288324.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            2512..3381
                     /locus_tag="PXD41_000771"
     CDS             2512..3381
                     /locus_tag="PXD41_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6288325.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            3378..4739
                     /locus_tag="PXD41_000772"
     CDS             3378..4739
                     /locus_tag="PXD41_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL6288326.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            4736..5272
                     /locus_tag="PXD41_000773"
     CDS             4736..5272
                     /locus_tag="PXD41_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL6288327.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            5363..5578
                     /locus_tag="PXD41_000774"
     CDS             5363..5578
                     /locus_tag="PXD41_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288328.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            5562..6068
                     /locus_tag="PXD41_000775"
     CDS             5562..6068
                     /locus_tag="PXD41_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL6288329.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
     gene            6118..6330
                     /locus_tag="PXD41_000776"
     CDS             6118..6330
                     /locus_tag="PXD41_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288330.1"
                     /translation="MKKNVIRYWLSVPFRIIAVLFFLVILTVRYVGYLLIYPLAFFAA
                     VGSFIVFCQWTYQEWLYYFKRGFAPI"
     gene            6376..6570
                     /locus_tag="PXD41_000777"
     CDS             6376..6570
                     /locus_tag="PXD41_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288331.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            6698..7267
                     /locus_tag="PXD41_000778"
     CDS             6698..7267
                     /locus_tag="PXD41_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL6288332.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            7257..7730
                     /locus_tag="PXD41_000779"
     CDS             7257..7730
                     /locus_tag="PXD41_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288333.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            7958..8033
                     /locus_tag="PXD41_000780"
     tRNA            7958..8033
                     /locus_tag="PXD41_000780"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7991..7993,aa:Trp,seq:cca)
     gene            8050..8235
                     /locus_tag="PXD41_000781"
     CDS             8050..8235
                     /locus_tag="PXD41_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288334.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            8261..8431
                     /locus_tag="PXD41_000782"
     CDS             8261..8431
                     /locus_tag="PXD41_000782"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288335.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            8574..8819
                     /locus_tag="PXD41_000783"
     CDS             8574..8819
                     /locus_tag="PXD41_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288336.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            8812..9381
                     /locus_tag="PXD41_000784"
     CDS             8812..9381
                     /locus_tag="PXD41_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6288337.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            9354..9704
                     /locus_tag="PXD41_000785"
     CDS             9354..9704
                     /locus_tag="PXD41_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL6288338.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            9709..9882
                     /locus_tag="PXD41_000786"
     CDS             9709..9882
                     /locus_tag="PXD41_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288339.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            10274..10798
                     /locus_tag="PXD41_000787"
     CDS             10274..10798
                     /locus_tag="PXD41_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6288340.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            10782..12002
                     /locus_tag="PXD41_000788"
     CDS             10782..12002
                     /locus_tag="PXD41_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDL6288341.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAY
                     LEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEA
                     GKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVEKWKGSVE
                     DGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYAL
                     TPLMQVKSAKGVLL"
     gene            11999..13375
                     /locus_tag="PXD41_000789"
     CDS             11999..13375
                     /locus_tag="PXD41_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL6288342.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            13329..14267
                     /locus_tag="PXD41_000790"
     CDS             13329..14267
                     /locus_tag="PXD41_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6288343.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            14254..15624
                     /locus_tag="PXD41_000791"
     CDS             14254..15624
                     /locus_tag="PXD41_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL6288344.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            15617..16051
                     /locus_tag="PXD41_000792"
     CDS             15617..16051
                     /locus_tag="PXD41_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288345.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            16066..17055
                     /locus_tag="PXD41_000793"
     CDS             16066..17055
                     /locus_tag="PXD41_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL6288346.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            17067..>17212
                     /locus_tag="PXD41_000794"
     CDS             17067..>17212
                     /locus_tag="PXD41_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288347.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHA"
BASE COUNT         5392 a         3204 c         4024 g         4592 t
ORIGIN      
        1 ttattttatc ttttgaattg ttgtagtaac agatcgagtt tattatcaac cccatctatt
       61 ttcttctcca tattgcctag tcgctgctca acattgtcta gtcgttgttc gacattatcc
      121 aatctagatt caactttagt gaggcgaata tcaagatttt tgatattggt ctctacttgg
      181 acaaacttat catcaatttt cgagaatcga gcttcaactt tggtgtcaag gtgtgaatat
      241 actgtccata atgcaattcc agcagtaact actaatgcaa tgagtgtaga gccaccagct
      301 ttataaaaag cctctttcgt caaataattt gacttgattt ctcttacatc gccttcaact
      361 tgtcttaatc gagcatataa attcacttct tccgtctcct gataactaat ttgtgaatta
      421 ttatgcccgc cgtatactgc atttgcaagt aaggatagta tgattgcatc tctaggatca
      481 ttttgaatca ttggtctatt cattttgtga gcccttaatc cattctaaaa ttctctctct
      541 gtcgaaaaaa agcatattat tacagcaaac acaagtgaca ataacggctg ttctcgcttt
      601 ttggtctaac caatattttg ttccttcccg ttcattgaaa tgcaaagaat gaaattcagg
      661 agctgcaaat ttcataactt catcaggaga tggctctatt cggtatggaa tggttggaac
      721 accgataatt ttctctccgc ataattccgt aaaagtgtca tagccatcgt gtaaataatg
      781 ttcttggcta ttacaaatag ggcaagttaa attccgccca gtacgttgcg tgataaaatc
      841 cgcaaactgt tcaggtttaa tgcgtttatt attcatttta acttcctttc tacccaataa
      901 aattcaactg ttagctttgg tggactttac aaatagcttc tatgctcaac agcgacacca
      961 ataatacgaa tatcttgttt cattgagctg agtgttggaa agtcggggtt aagcggtatt
     1021 agctcaaaat gaggattgcc ggattcagac cattcgccta actcccgata acgttttaaa
     1081 gtagcctcac ctgtgccatt aaccgctgct acataatcgc ccgggtgagg acgtttgcga
     1141 atatcgatta acaccagatc gccttcacta aatttaggct ccatcgacat tccggaaatt
     1201 cttaaaaaga aagcgtccgg tccggcatca atttccgtat cgatatagtc gtagccctcc
     1261 gaatctttga aatcaaaggc ttctgtccat aaacccgctt gtatattgct gatcaacgga
     1321 tatgagttcg attttgtcgg tctggcaagc tgaacgtttg tatcaaaagc aagtgtttct
     1381 ggagaaacac caagcacttt gctgagtatt tcaatatcat caagatcggg agtacgattg
     1441 tttctctcat aattagcaat gcgagattgc ccccatttgt tatttttatc tcgattatct
     1501 attgatgtac atctttcagc aacttcatat tggctgattc ctagctgttc tctgtaagcc
     1561 ttaattctac tacctaaggt tgtcatagca ctctcctatt agattttcct cattttaaca
     1621 cgctccgtta tatccttgtg aatcacaaaa tgaaatttac aattagttca ttttgtgatt
     1681 taattaaaag atataaatca caaagagaaa tttgtatgaa taagatagct gaaatacgaa
     1741 accaaattgg tataagtcaa gctcagttag ctgttcagat tggttggggg caaccaagaa
     1801 tagctaacta tgaaactgga aatcgtaccc catctattta cgttgctcaa aaaattgttg
     1861 agggattgaa cgaattaggt gcaaacgtac gaattgatga cgttttcccc gttggcaact
     1921 aatttacccc aagaggcttg caatgccacg caatgaatta acaaaaaatg caagagcgat
     1981 tgcggatttg attcatcgaa aatccgcaac ggtgacgcat aagaaactag caagagcaat
     2041 cggactgagt gaatcacaat ttagccgtac atttgcagat aatgtggaaa tggtggcggt
     2101 gattattgat tacttaagta ttgagcttgc ggataaagac gagttactag agctgaaaga
     2161 gaaacgatat aagcgaataa atctcgaaga agcgacaaca tagaagttac caacaatgaa
     2221 aaatttttta gaaaaattca aatcattcta ccacagtaaa aattcaattt ttattagagt
     2281 ggcaattttt atgctgcttg cgtggtgggt ttttaacaat taaaaaacca ccgctggaac
     2341 ggtggtaatt tacaaggagt taccttttga aaaatcaacg caatgataca caaaaaagct
     2401 ccttatggca agagtttgaa tatcgaaaac ggttaaaaaa tctcattgaa agcggtttat
     2461 ccgtagccga aattgaaacc cgttcacaac aaatttatga ggagctgaaa agtgaatgca
     2521 caaccgaagc aaattaaccc aattttaaaa ttgcacccta aacaatcaga ggctaagaaa
     2581 gtgagtgttg atgatggtta tacacaaatt ccgaatgagt tattaaaagc aattttgcga
     2641 tcgggtgttt taggttggaa aggctcttac ttactggcta ccgtcttaaa aacattgtct
     2701 tggcataaag aaagtgattg gttcacgcat tcccaagtgt gtgaaatgat gaatattgag
     2761 ccgacaaaat accatattaa tcaactttcc gctgctcgaa aagaacttat ccgtgaaaat
     2821 atcttgtttg aagatggtaa ggaaacaggg gtaaatctca gtgtttttga atggaaaatg
     2881 gtatatcccg aaaaagtagg gagttcccga aataataggg aattaattcc cgaaaaagta
     2941 gggaatgggt atcccgaaaa agtagggaac acaaaagaaa ctattacaaa agaaaaaata
     3001 aataatgaat ttactaacgt aaattctgtg caacagcccg agacctcttt gccgaaaaaa
     3061 acaaaatctg agccggtcga ttatcaagga gtgatggaag aatttaatcg tgctgtggaa
     3121 gacacaccga ttccgcaaat tcgggcgatg agtgatgagc gaaagcgatc ggttcacgca
     3181 ttagcaaaaa tcttgcgaaa agaatttggt ggctacacca gacaacactt tgccgattac
     3241 ttcaatgatt ttgtccgaca ggcaagtagc cggaaagaca gattttattt tggcgggctt
     3301 gatggctcgg cttgggtagc aaatttcggc tacatcattc gttcgaaaac gttttataag
     3361 acttgggaag attcgctatg agccaaaatt tgaaaaatat cacttacgag gttgaatatt
     3421 tgctggttgg agcattgctg aaatccggtc ttaactcgaa agctagggac gtattgagct
     3481 ggttagagcc tgaaatgttc gctacctttc aacttggggt gatttatgag gctatccgca
     3541 agcaggcgtt gaaagataac gtgatcgata tgctgttact caataccgac tacggacaag
     3601 attttgccac gttggcagag ataatgaaaa acacgatcag cggtgcaaac ttagacggct
     3661 atgcagaaaa agtccggcaa tatcatcaac gccgagaagc ccagcgagtg tttttagacg
     3721 ttgcaggtga gttgcaaaat gcccgagacg agcagttaga tgctatcact tcaaccgggt
     3781 tagctcacct aagcaaatta ttacaacgtg gcggaaaagt gaaaccgatt gatatgaatg
     3841 atttgctcga aggttatttg gaattgttcc aagaacgtgc aaaaccaagt tttaaagagc
     3901 gtttgttgtt taccggtata gaagcattag atgggaaact aggcggtatt aacgataccg
     3961 atatttgcat tgtagcagga cgtgccggta acggtaaaac cgaaacagcc atcacgttta
     4021 ctaaaaacat tatcgagaat aaaggttcgg tgctgttctt ctcgctggag atgagcaaag
     4081 agcagattat ggataggctg attgccagtg caagcggtgt aaattcagta aaacttcgca
     4141 atccggaaat gatgaatgat gaagattttg cccgaatggg aacggcgatt cagcctttac
     4201 aaaatcagca gttgtacatt gttgataaaa gcggattaac cgcagaagag attgtggcga
     4261 ttgcagagag ccatattcaa gagtacggca aagtgagtgc ggtagtgatt gattatatcg
     4321 gtttggttcg acacggcaaa ctagacggca aaattaaccg aacctatcaa atcggtgaaa
     4381 gtatggagcg gtttaaaact ttctgcaaaa acaatcacac accgatgatt ttattggcac
     4441 agcttaaccg caatgcagat ggcagtcgcc caaccaacgc agatttgcga gacagtggca
     4501 gtcttgaaca agatgcaagc caaatcatta tggtgcataa ccaacgcaac aaagacggcg
     4561 agccagcccc ctatacagaa tggattgtta ctaaaaatcg ctttggagca aatggcacgg
     4621 tttatatgca attccagcag ggtaggttcg tagaatgcga ccaggcagaa gcgcgggagt
     4681 atttccagcc gaaagaaact aaaacatcat caaacaaacg ctatggagca atgcaatgac
     4741 agattttgat aaaaatataa aatacaaaat tatttacgca gatccgcctt ggaagtataa
     4801 ggatagtggc tgtaatggga gtgcagaaaa ccattacaca acaatgaata tcaaagaaat
     4861 atgtgattta cccgtccaag atatttcaga caaagattct attctgtttt tgtgggttac
     4921 ttaccctatg ttacctgagg gcttaaagtt gattgaggcg tgggggttca actataaaac
     4981 aatagggttt caatgggtga agacaaataa gaagaataag aattcttttt tctttggctt
     5041 gggacgatgg actagaggta ataccgaatg ctgtttaatt gcaacaaaag gaaagccatc
     5101 gagggtaagc aataaagtga gccaattaat tattgagcca atacaacatc atagtaaaaa
     5161 gcctgacatt gtcagagaaa agatagttga gttgatgggt gacttgccaa gaatagagtt
     5221 gttcgccaga aataaaaccc aaggttggga tgtttggggg gatgaggtgt gattgtttca
     5281 agctattgtt acccaaagtg cggtagggtt ttattaaaaa ggttggcggt tgtgaaggat
     5341 aacgaaggtt gggacggttt agatgattac ttataaatgc cccaaatgca acggagagct
     5401 tgaagattta agtattaatg atgaatgggg ttggttttta gatgagccgt atcgttgcaa
     5461 cggacactat acagggcggt ttccaaacat tagccgagat agcacgttaa atcgcacaaa
     5521 atcctgtggg tactttagca aggaagaggt taagaaagta aatggcacac agcgttaatg
     5581 acatcgtaaa agcccacggc aggcgttata aagcaagatt gaaaatacag atgataaaaa
     5641 tgcaaggagg cgttttagtc ccccttaatg agcgtgaagc tgaagcattg gtatcactta
     5701 aaaatggcga gcaatatgaa attgaggtta ttcgcactcg caatccagcc tttcatcgga
     5761 aggtcttcgc ctttttaaat ttttgctttg aatattggtc ggcagacaaa accgaatggg
     5821 agttttttga tgagaggaaa cagtttgata ctttccgaaa aaatctgact gttctggcag
     5881 gatttaaaga aatcacatac accctagatg ggcgtatgcg tgtagaagct caaagtctta
     5941 gttacggaaa tatggaacaa gacgagttcg agcaggttta caaagcattg attaatgcag
     6001 ctatcaagca cgttttcaac aataccaaag atgagaatag gataaatcag ttgtattcgt
     6061 ttttttaatt aaggcgaaat cgccatattt aattaggttt aattgcagga gattaaaatg
     6121 aaaaagaatg ttattagata ttggcttagc gtgccattca gaattattgc agtgcttttt
     6181 ttcttagtca ttcttactgt tagatatgta ggttatttat tgatttatcc attagcattc
     6241 tttgcagcag tcggtagttt tattgttttc tgtcaatgga catatcaaga atggctttat
     6301 tattttaagc gcggttttgc tccgatttag tgtgtgttta ttaattccct cgaattcggg
     6361 ggaaggagaa gtaagatgac aaaatttttt gaaactatcg cattcgtgat gttatttggc
     6421 attattccaa gctgtttgtt ggcgattaat actactttaa tgaatatgaa tattaaaaac
     6481 gcaccgtggt ttatggtgat tattcagtta ggttttaata tcacttgtta ttggttgtgg
     6541 tttatttctg ttatgcggaa tgttatttaa ggagattaat aagtgagcca gtgcaatgaa
     6601 ctgactgtaa ttttaatcgc catcgctatt cttagtgtat gtgccggttc actctttttt
     6661 attgagtggt ttgataagag agatggtgag ggttggaatg gctaacaaac cacctaaaca
     6721 acacaaatgc aaagagtgcg gcagttatta catcaaattt caaagcacgc agcaggtctg
     6781 ctctgttaag tgtgctatgg caatgggtaa gcgtaagaca gaggcgaaac gcaaaaaaag
     6841 tgcaaaaatc gaccgcttgg agcaacggaa gcggctggaa aaattgaaaa gccgtagaga
     6901 ttttgagaaa gatttacaaa agatatttaa taaattcatt cgcttgcgtg ataaagattt
     6961 accctgtatt tcctgtggcc gctatcatca ggggaaatat gatgcagggc attataaaac
     7021 cgttggtggt aatcctgagc tacgttttaa tgaagataat tgccacagtc aatgtgtgcc
     7081 gtgtaaccga catctgcacg gcaatattgt gaattatcga gtaaatctga ttgagaaaat
     7141 cgggcttgag cgtgtggaat ttttagagcg taaagaccac ccaccattaa aacttactat
     7201 cgaacaaatc aaagatttaa tcaaagtcta taaagcgaag tgcaaggagc ttgagcgtgt
     7261 tacctagaaa aattaaaaac aagtggttag agcctgaaaa gcagaaatgg atcgaagagt
     7321 tgctaaggtt atggggggcg tgggaatttg gcggattgga tttagaaagt cgggtaaata
     7381 tgatttaccg gctgatgaaa tctgcggagg gggttaaaag tctttcatct agagaggttt
     7441 gtaacgatag cctcggcacg ctgatcaatg agatttttac ggtagtcacc aaaagagacg
     7501 taatgttagc cgatatactc aaacaaaaat actggttcgg gcgttcggag cggcaaatcg
     7561 ctatttatta tcaactaagg gacagcgagg gtagaaaaga aagacgatgg caagaaatta
     7621 ttcaagataa atgcaaaaaa gcggaaagaa ttattgcaga tattcttgaa agcaagattt
     7681 catccagtaa ttctacagat aaactgaaaa aatatcaatt ttccccttga ttttagtgcg
     7741 taacaagtgt atattttgtg ctaatggtgg acgtagtata aatgatgttt accaatgtta
     7801 gttaaagacg cagcctgaag taatattcag ttcggaggag aataactaga aacgacgtcg
     7861 agtatagtta tttcagcgtt tgcgtggcag tatgccgacc gaattagttt aacagccctg
     7921 agcagaaatg cttggggctt ttttgtttac ggattttaag ggtgtagctc agttggtaga
     7981 gcagcggtct ccaaaatcgt tggttgttgg tttgagtcca accacccttt ccaaatgcga
     8041 gtaaatgtta tgtataacct tgatgatgca attcaagaat gcagagaaaa atttggtgaa
     8101 gataagcctt atttttctga agctggaaca cttacttttg ctggttgcaa agccctctct
     8161 cgattaagag atgaaaagtt aggaattaag gctccgccaa atttcccttt cccaagggtt
     8221 gaagatctat cttagctaca aaaatcaatg agggattgct atgacggaac aactaaatac
     8281 tcagtcaaaa agcggtgaag aagatcaaga aaaatctcaa gatcgctatg ccgtgggctg
     8341 gccatctcga cgtatatcag attgcgttca gcacttccga agtaggaaaa tttatccatt
     8401 tgccagtaat aatgacgtga agcaaggtta aatgcttctg gtggtacaga gtaaattcaa
     8461 tcatttttac cctctgctag tttatttgtt ggggaacagt attctagcag aatttttaac
     8521 caaagctcag tctcacgact gggctttttt attgcctcga aacggggtgg agtatgaagt
     8581 taatgaaaga tatgggaacg cagagctata tttggtcggg atttagcact tggctggcgt
     8641 ggctcggcga acagcagaat ttaatgttac ttagtcttgc tatcggtatt gttactgcca
     8701 ttgcagggct tattcagcga tttgatgaat ggcgtaggcg taagcgtgaa gatgagcgag
     8761 cggaagagct tcatcaagcg aaaatggcaa gattgagaaa ggggttaagt gatgagtaaa
     8821 agccttaaat atggcagtgg tatcgtttgt ggtatcgctg ccattattac attagtccaa
     8881 tatcaacatc ccgaaatccg cactaaccaa gctggattag agattatcgg taatgctgag
     8941 ggttgcagac gtgatccgta taaatgccct gccgatgtaa tcacggttgg cattggctca
     9001 acggagtttg gcggtgaaaa gattgaccca aatcgtattt attctgacaa agaaattgct
     9061 gagcgttggg caaaagattt gaagattgcg gagagttgtg tcaatcgtca ttttaatggt
     9121 aaagacatga acgataatca attttcggga atgacgtccg ctgtatttaa tatgggttgt
     9181 tataacatga gattttatcg gaataaacaa ggtcaatatg tgcagactac catccataaa
     9241 ctcgcagtga ataaacaatt tgaggagatg tgtcatcgac tacctgactt tattcgtgcc
     9301 agtggtaagg tattgaacgg attggttatc cgccgtgaaa aggagaaagc attatgctta
     9361 actggattag tggcacgata gccattgtga ttttgggctt gtgtgtatgg ttatggggtc
     9421 agtcacagat gatagatagc ttaagagctg agaaccgcgc acaagcccaa accattgagc
     9481 agcagcaaaa agccaatcaa cggctaaccg atagcttaga gcaagagcga caagcggtcg
     9541 aaaaaatcca aaaaattgca aatgagctgc ggaataaagt ggagatggcc aagaatgaaa
     9601 ttacatcaat actggcacaa gacagttgtg ctaaagctga tttgcctaat ggcgttgctg
     9661 atagcattaa gcggctgcac cagcagaaca atcacaagca ctgagtattt gtatccgccg
     9721 gcagcttacc ttgtgccgtg tgggcgaaca gaatttagcg gtagaaccta tggcgatacg
     9781 gttgagtatc tcgtcaaagt gatgggagag cgtgatttgt gtgctaatca aattgaccgt
     9841 atcagagaat ggcaagcaca aaccaaacaa gggtttaaat agctaattat ctaattaacc
     9901 gctattgaaa atgggagcgt aacagctccc tttttgtttt gatggaaagt aaatattaca
     9961 taatttagct atggtttcgg ggttggttgg ataaaacacc gaggaaatac ctaagtgatg
    10021 tgatttatat aaaacaaaac cccgaacatt tgcggtgttc gaggtttttt tattacccat
    10081 tgaaacggaa tgagtaacaa gttatggaaa ttattacatt tttaaccgta accatcaagg
    10141 agattcttat ggaatatggt ttatggcaaa taagcctagc agtaacagtc cctattttgg
    10201 cgttcgtgtc gccaaagctg attaatgcta ttgctaatct attaaatgca atgaagtaaa
    10261 ggaatttaac ccaatgacta aaaaaggcga ggttaaagcc acgtctaaag gcgtgggtaa
    10321 attaaccgat aaacagaaac gatttgtaga agagtatctg attgacttga atgcgactca
    10381 agctgcgatt agagctgggt acagcgaaaa aacagcatac tcaatcggag aagagaacct
    10441 gagaaaacct gaaatcagaa gtgcaattca ggaggctcaa aataaacgct cggagagaac
    10501 ccaaattaca caagatgatg tgctaaatgg gttgcttgaa gtgattgcaa tgagtactgg
    10561 taaaaaaatt gtgacagaaa ctgatgttgc aaaaaatgac aatggtgagt tggtcggttt
    10621 tgatattgca aaaacaaaat tcgaacctgc cgccgcaaat aaagctcttg agttactcgg
    10681 taaacattta ggaatgttta aagacaaggt tgatttaatt aattctgatg gttcactgaa
    10741 tcgaccgatg gtgattgaat taattgctcc gagtttagac gatgaaagca cagattgaac
    10801 taccacctaa actgttgcct gtttttgcca aagattatcg ttacaaaggt gcttatggtg
    10861 ggcgaggttc aggcaagact cgggcatttg ccaaaatgtc ggcagtgtct gcttataaaa
    10921 gagcaatgcg aggggaaagt ggcgttattc tttgcggtcg tgagtttatg aactcattgg
    10981 aagaaagctc tcttgaagaa gttaaacagg cgatcaagtc tgagcctttt ttagcaaatt
    11041 tttttgatgt cggcgagaag tatgttcgca ctaaagatgg gcggatttct tatgtgtttt
    11101 ccggacttcg gcataactta gatagcatca aatctaaagc ccgtattttg attgcgtgga
    11161 tagatgaagc agaaacagta agcgaaactg cttggcggaa attaattcca accgtgcgtg
    11221 agaataattc cgaaatatgg gtaacttgga acccggaaaa tagagggagc gcaacagata
    11281 ctcgcttcag gcaaaatcca cctgaaaaca gctgcataat tgaaatgagc taccaagata
    11341 atccttggtt tcctgatgtg ctcgagcaag agcggctaaa tgacaaacag cggcttgatg
    11401 atgcgactta tcgctggatt tgggaaggtg cttatttgga agcgagcgaa gcgcaaatct
    11461 ttcgcggtaa atatcaagaa atggaatttg tgccgaaccc tgattttgat ggcccatatt
    11521 acggcttaga ttttggtttc gcgcaagatc cgacggcggc ggtcaaatgc tgggtattta
    11581 atggcgatct gtacatcgag tttgaagcag gcaaagtggg cttagaactt gacgacaccg
    11641 cagactttat tgccaaaggc gtgccacaaa ttgccgatca cgttgtgcgt gcagattcgg
    11701 cgcgtcctga gtcaattagt tacctcaaac gtcacggctt accgcgcatt atcggtgtgg
    11761 agaagtggaa aggctcggtg gaagacggca ttgagcatat taagtcctac ggcaaagtct
    11821 ttattcaccc acgctgtcag caaacgctca acgaatttcg cctttattcg tacaaaaccg
    11881 accgcttatc gggcgatgta ttgcctgtcg tgattgatgc ccataaccac tttattgatg
    11941 cgctacgcta cgcattaacg ccgttgatgc aagttaaaag tgccaaagga gttttactat
    12001 gagcctagag caagacagac tggctttttt agccgaagcc ctagggcttg gcaatatcaa
    12061 acgaagaacg ttatggaagg agtttggcta ccctaatacc ttaacattca accatttctt
    12121 aaaagcctat aagcgcaata gtatcgcttt tgcagcgatt aaccgcttac ttgacggttg
    12181 ttgggttgac tgccccgtaa tcgttgaggg tgagcaaaag aacgaatcaa agcagacaac
    12241 cgaatgggag tccaaagttg aacgttttat gaaacgctac tggtcggcaa tcaaagaggc
    12301 agatagacga aaccttgtcg gtaactattc ggcgttatta cttcaagtaa gagatggtca
    12361 acaatgggat cagcctattt tgcaaggcgc gctatctagc attggagagt tcggactggt
    12421 taaactgatc cccgtgtggc agtcacagct ttcagtgaca gagtttcaag aggatgtgac
    12481 cgccgataat tacggcgaac cgctgatgta tcaattcagc gaatctgcct ttggcaaaaa
    12541 aagcgtgtca cgaaatatca aggttcacgc aagtcgtgta attttgctca atgagggtgg
    12601 cgactttaat tcccctcatt ctggagttcc tctgcttgag gcgggttaca acaagctagt
    12661 tgatctcgaa aaaacatcgg gcggcagcgc cgaaggtttt ctgaaaaacg caagccgaca
    12721 attagggatc aaattaacaa aagatgttga tttgagacag ctcgaagaca gcgcaaaagc
    12781 ccttgggttt tcttcatttt ctgatgcgtt gaacgacaag atcaagaaaa tcaactcagg
    12841 aacagactca gccttgatta ctcacgaagg tgatgcctct gtgttgtcag tcgcaccagc
    12901 agatccgaag ccaacgtggg aaatttctgc aaatgagttt gccgcctcag tacaaatccc
    12961 tttcacgatt ttgttcggac agcaaacagg gcgattggca agtgacgagg acaaaaccga
    13021 ctgggcaaac cgttgcaacg gtcgtcgaaa tggttttctc accgatgtga taacacaact
    13081 acttaatcgc ttgtggttca tcggtgtgct acctatgcca aaaaatagcg atgtcacagt
    13141 gtcttggtct gacttacttg caccaagcga aaaagagaaa atcgcaaacg cacaggcttt
    13201 ggcttcagtt gcaactacat cgcagtctgc ctttggtttt gccgcggtaa cagcgaacga
    13261 aatccgcgaa tctttagggt ttgaacctct gcctgataat ctgattccgc caacaattga
    13321 cgacgaaaat gaagatcaag acgaaaatca agccactgcg gattccgaca aataaagccg
    13381 atccgctcaa tatgggagtg tcggttgcca agctatttcg tcacattgat gtcatttact
    13441 cacaaattaa gcgctccatt aagcaacaaa tcttgcaaaa gatgtcactg cgactgcaag
    13501 caaataattt tgagtatttt ccttcgtatc ttactgcgac tgagttggcg gatttgcttg
    13561 aaaccttgca aaagattatc gacaaagaga ttttgtcgaa tggttctcaa ggcgaaaatc
    13621 tctggtttga ctcctatatc gacgaagcag cactaaaagg cactcagtct gcggtcactg
    13681 atttaggtct gcaatcagag gcttatcgca gtcagcgaaa cttatcatca atcgttttca
    13741 gtcctgcgta cttcaaccga ttggcgattg cacacatggc aagttatagc gagtggcaag
    13801 gtttaagcga cgagttgcga aaatctttgg cgggggtgat cacggaggcg gttttaaacg
    13861 gcaaaaacgt gaaagaaact gcccgtgaga ttcggcaaaa acttgatgtg tcatcaaaac
    13921 gggcgaagcg aatagcgcaa tcaagccagt tggcggcata tcgtcgggca gaatggcaag
    13981 aggcggaaga ggcaaaagaa gaacttgggc taaacaccaa gctcttacat ttttcagcgc
    14041 tcaaagctac tacgcgatta gcacacgccc aacgccacgg caaatacttc gatgttgcag
    14101 aggtgcgcga atggtatagc cgagacggca accaattcaa ctgttactgc aagcagtctg
    14161 tggttgtggt caacgccgac ggtaaaacag atattgagcc tctccttgtt gggttggcta
    14221 aagaacgtaa acaatgggta ggagcattaa aaaatgtcaa aaaataacgt gaacatcgtc
    14281 accgtcatta acagcaaaaa tatcagcaca gaatctattg acggagatca acacctgatt
    14341 atccgcggcg ttgtgccgat tgttgatgat gttgtgatga acgacggact ttatcctgcg
    14401 gatgaaatca ataaaagcta caacagctta gagggcaact ttatgccgct tgggcatcca
    14461 aaaatcgaag gtaaatacgt ttcagcccaa gatgttcgag cggtgaacaa acatcacgtc
    14521 ggtgcgtggg cgaagaacgt acgcaaggaa agtggcaaag tgctggtcga tatgtatatc
    14581 aaccgccgct ttgcggaagg ttcagaacag ggcaaaacct tgcttgaacg acttgacgga
    14641 atggtgacaa acaccaacgc tgaacctatt cacgtttcca cagggctgat tctaaacaaa
    14701 gtcaagcaat cgggtaaatc caaaggcaag aaatatagct ggattgcgac aaatatgtcg
    14761 ttcgatcata ttgcaatatt gcttgatgtg ccgggcgcgg cgacacctga tgatggcgtg
    14821 gggatttttg taaaccaaga cggaagcgaa atgggggtgg aaaatgtaaa cctaacacaa
    14881 gcggcggatt accgcacaga aaagctgttt gacaaagtac gattttacct gatggcgaac
    14941 tcagatttat cgtttgaaga aattcatcgc gcgctgcgtg aagctattcg ccccgaaggc
    15001 aaagataagt ggtcattttg ggtcgaagct gtttacccga aatacttcat ctattcggac
    15061 gataacagcg gcaagaaata caagcggagc tattttattg acgaaaatga caatgtgcag
    15121 ctcactagcg aacctgtcga agttgtcaag aagattggct acgaagaaat tacaaccaat
    15181 gaggaacata atccaatgaa aaccaaaatc ttagccgtgt tgaatgcggc aaacgtgaaa
    15241 acggaaggct taaatgacga tcagctcttg gaagcctaca acaagctgca agcggataag
    15301 ggtaaagagc ctgaaaagcc taaaaatgaa gatgacagcg aaattgatga gaaaatcaag
    15361 aaagcagtca atgccgcgat tgagccactc cagcaagcct tgcaagctaa tactgacaaa
    15421 gagcaagcag caatgcgtgc ggcggtgaaa gccaagttca atatgagcga tgccgcagtc
    15481 aatgctttgc aaggcgaggt attaactgag ttgtatgcgc aaacgcaaca atcggtcgga
    15541 ttaaacaata attcggcaaa cggcaacggc gacaatcaat gggatggtta ctcactcaac
    15601 caagaggaga aaggcaatga gtaatgtaat ttatcgcggt tcggtcaagc gtgaacctca
    15661 aacggtgaat atcgtgatca acgatacttc ggcaccgggt gcagtagtta aactccacaa
    15721 cggcaaatta gaggcggcgg ctgatttaaa aggtcgccgt tttttattgg gcaacaaccg
    15781 ctttaagggg cagacaatcg aacaagcgta tgcgaagggc gatactgcaa cggcgtttcg
    15841 tttagagcct gaacaggagt attacgcgca aattgccgac ggcacttata actttggcga
    15901 tgaactcacg gtaaaacaag cgggcggcaa actgaccaaa gcggagacgg gcgatgtagt
    15961 gctatttttc ttcgacgaag aatcgcagcg tgtaatcagt ggcggcaaag gctatgccga
    16021 tgtcgtggtg gcaaacgcct acactaaata agaggtaaca aagcaatgtt gaaattcaca
    16081 aaagaacaag aacgcttcgt gattaacgag cggatcaatt acgacaaaaa acacgcgcta
    16141 atggcagcaa attcggcggg gttattgggc aacgcgatga ctttgccgaa agatgtctgg
    16201 gcggaatggg atcgtgatgc agtgcaaatt cagcgcgaag aattggtggt gtttaacgat
    16261 ttagcgggca tttcaaaatc aatgccgatt ggcaaactta ttcaccattt ccaaacggta
    16321 tctgatagcg gttcggttaa tatctcatta gacggtcgtt catcagcgaa aaccgataac
    16381 gtggtgctta actaccacgg tacaccgttg ccgattattg attccacttt ctcttttggc
    16441 tggcgcgata tgtcggcagc tcaaagcgaa gggtatcaga tcgacggtgc agcacgcgcg
    16501 aacagtctcc gcaaggtggc tgaaaaaatg gaagatctcg ctttaaatgg tgattcctct
    16561 attgtggttg gcaatgccaa gctttacggc ttgcgtactg cgccaaatcg tatgactaac
    16621 acacacaatc tggatttagc cactgcgaca ccgaaagaaa tttacgatgt gttccgtgac
    16681 ttgattagca aattccacgc gaagaactac tactctcctg taacgcttta tgtgaactat
    16741 ggcgactatt tcgcaatgag tacacgtgat tactccgagc agaaatccga aggatctatc
    16801 ttgaacaaag tgatgacgat tccgcaaatt gcgaaaatcg tgccagcaag ccgtgtaccg
    16861 caaaatgaaa ttctcggctt gtgcaagcgt tcggatgtgt accaagtgct taacggtatg
    16921 ccgttagtga ctcgtccgat tgcgcgccat aatgaaaccg atgattactc gttccaaatt
    16981 atggcagccg ttgccgtgga gttcaaattc gacgataaag gcaatgctgg ctatatccag
    17041 tacactaaat cctaaggcgg tgcaaaatga agtggctatt aacacacgat agccacgagt
    17101 tgaagaaagg cgatgtttac gaaggcgaaa cattaccgct ttggcttgtg ggcaaagcta
    17161 tcgaaatcga agaaaaatcc tttgaagttg caacgccttc tgatcacgct ga
//
LOCUS       DANLXB010000037        17187 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLXB010000037 DANLXB010000000
VERSION     DANLXB010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17187
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..214
                     /locus_tag="PXD41_000795"
     CDS             <1..214
                     /locus_tag="PXD41_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6288348.1"
                     /translation="ILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEEREGS
                     RIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            257..586
                     /locus_tag="PXD41_000796"
     CDS             257..586
                     /locus_tag="PXD41_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6288349.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(625..1011)
                     /gene="cueR"
                     /locus_tag="PXD41_000797"
     CDS             complement(625..1011)
                     /gene="cueR"
                     /locus_tag="PXD41_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL6288350.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            1100..1300
                     /locus_tag="PXD41_000798"
     CDS             1100..1300
                     /locus_tag="PXD41_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6288351.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            1353..3545
                     /locus_tag="PXD41_000799"
     CDS             1353..3545
                     /locus_tag="PXD41_000799"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL6288352.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(3598..4383)
                     /gene="truA"
                     /locus_tag="PXD41_000800"
     CDS             complement(3598..4383)
                     /gene="truA"
                     /locus_tag="PXD41_000800"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL6288353.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(4448..5137)
                     /gene="folE"
                     /locus_tag="PXD41_000801"
     CDS             complement(4448..5137)
                     /gene="folE"
                     /locus_tag="PXD41_000801"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL6288354.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            5238..5945
                     /locus_tag="PXD41_000802"
     CDS             5238..5945
                     /locus_tag="PXD41_000802"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL6288355.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(6000..7097)
                     /gene="apbC"
                     /locus_tag="PXD41_000803"
     CDS             complement(6000..7097)
                     /gene="apbC"
                     /locus_tag="PXD41_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL6288356.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(7094..8641)
                     /locus_tag="PXD41_000804"
     CDS             complement(7094..8641)
                     /locus_tag="PXD41_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6288357.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(8667..9317)
                     /locus_tag="PXD41_000805"
     CDS             complement(8667..9317)
                     /locus_tag="PXD41_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL6288358.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(9439..11310)
                     /locus_tag="PXD41_000806"
     CDS             complement(9439..11310)
                     /locus_tag="PXD41_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL6288359.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            11492..11761
                     /gene="rpsO"
                     /locus_tag="PXD41_000807"
     CDS             11492..11761
                     /gene="rpsO"
                     /locus_tag="PXD41_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL6288360.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            11833..12702
                     /locus_tag="PXD41_000808"
     CDS             11833..12702
                     /locus_tag="PXD41_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL6288361.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(12792..14057)
                     /locus_tag="PXD41_000809"
     CDS             complement(12792..14057)
                     /locus_tag="PXD41_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL6288362.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(14076..15386)
                     /locus_tag="PXD41_000810"
     CDS             complement(14076..15386)
                     /locus_tag="PXD41_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL6288363.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(15398..16162)
                     /locus_tag="PXD41_000811"
     CDS             complement(15398..16162)
                     /locus_tag="PXD41_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL6288364.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(16162..17097)
                     /gene="hemC"
                     /locus_tag="PXD41_000812"
     CDS             complement(16162..17097)
                     /gene="hemC"
                     /locus_tag="PXD41_000812"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL6288365.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         4889 a         3712 c         3239 g         5347 t
ORIGIN      
        1 aatcctaaag cggaaatctc aaaagacact acaacaaatc tacacccagc ctatttctgc
       61 caatattaaa tggacaaata tagaagctct ttttctagag ttaggagcag aaatagaaga
      121 acgagaaggg agcagaattg cagttgtttt atttcaacag gtcagagtat ttcatcgccc
      181 acacccgaat cctgatacag ataaggggcg gtagcgagta ttaaaaaatg gttatctgaa
      241 aacggagtca ttccttatgc gtaatattat ggatattaat ggttataaag ctgtcattgc
      301 ttacgatccc gaaacagaat tatttcgagg tgaatttatc ggattaaatg gtggagccga
      361 tttttatgcc gataatgtca ttcaattaaa aaaagaaggt gaactaagtt tgaatatctt
      421 tttagaactt tgtagagaaa aaggtattga gccgttcaaa caatattccg gaaagtttaa
      481 tgttcgcctt tcgcctgaat tacataaagc tgcggtaatt gcagcaactg ctgaaaattt
      541 aagcttaaat gaatggatta accaaacgtt agaaaagagc gtgtagccta attgcaaaac
      601 aatcacctat tttgaccgct tgtattaccc gtttaaccca ttcaatatcg aacactccga
      661 attggcgttg ccacagcaag agctactcca gcttttgagc aaagtcagca tttggtttaa
      721 atcggcaatt ttttgttcaa gctcaccgat atgctgttcg gttaattgtt ttacatctcg
      781 gcttgagcgg tttgggttgt cgtttaattt aagtagttcg ctgatttgag ccagcgaaaa
      841 gcccactttt cgggcattgc tgataaaatg taatcggctc aaatcagtag cattgtagaa
      901 tcgatacccc gcttcggtgc gacttgtcgg cggcagaagt cctgcttttt cataatctcg
      961 gatttgtttg gcggaaagcc cggttttttc tgcggcttgg ctaatattca ttataatcct
     1021 ctcactttaa tcgcttgacc ttaacctaag gttaagcttt attatacgcc tgaataatca
     1081 ctcaaaacag gagaaaatga tgacaattac cctacaactt gatggcttac attgtggcaa
     1141 ctgtgtgaaa agtgtcgaaa aagcgttaaa tggcgtggct ggggtgaacc aagttagcgt
     1201 aacgttagaa ccgcaaattg ctgtggtgga aggctcagca gaagcacaag ccttaattga
     1261 agcggttgaa gacattggct ttgacgcaaa attagcctaa ttaataaggg gcagaaattt
     1321 tgccctaatc tgcccaatat ttcggaggat aaatgacaag cacagctcac tattcgccag
     1381 aacaacaact tttgattgat ggaatgcact gtgccgcctg tgttcggcga gtggaaaaag
     1441 ccttacttaa agtggaaaag gtggaatttg cctcagtcaa tcttgccgat caaaccgctt
     1501 ttgtgcaagg caacgccaac cctgaagcct tggtagcagc ggtagttaaa atcggttttg
     1561 gggcagaagt gctggaaagc gaggaagaac gccgaattaa acaacaagcc caaacgcaac
     1621 gagtgttagg gcataaacgc actcaattta tgcttgccct tgtagttggt tttgccttag
     1681 ttgcttttgg gttctacaaa ggaatgacgg taaacgaaac caatcgttcg ctttggctca
     1741 gctgggcagg tattagcctt gcgacaatgt atttttcagg taaagatttc tttcttgggg
     1801 cattttcagc actgaaaaac cgctcagcca atatggacat gttagtagca atcagcaccg
     1861 gcacggcttg gctctattct tgttggctca cgcttttccc acaaccgaat gctcacgttt
     1921 attttgaagc cagcgtgatg attctcggct ttatcaatct aggaaaatac ttagaactga
     1981 aagccaaaca gcgttcctcg ctagcattgg aaaaattgct ggatctcgcc ccaaaacaag
     2041 cggtcatttt tgaagaaaat attgcaaaaa ccattccggc taaagcaatt aagccacaaa
     2101 tgcgggtgca agccttaacc ggtgaccgct tggcggttga tggtatttta gacagtggct
     2161 ctatttgggt tgatgaatca atgctcaccg gtgaagccct acctgtagag aaaaaaatcg
     2221 gtgataaagt gcgagccggc actctggtgc aagacggttc aggcacttac attgccgaac
     2281 aggtcggctc acaaaccgct ttggctcgtg taatcaatgc cgttcgccac gcccaaagca
     2341 gcaaaccgcc attggcacag tttgtagata aaatcgccgc tgtttttgtg ccggtggtgg
     2401 tttcaatcgc attactttct gcgttaattt ggctggcagt tgggcaggat tttgcctttg
     2461 cactctcgat ttttactacc gtgttgatca tcgcttgccc ttgtgcattg gggctggcaa
     2521 ttccgctttc taccattgcc ggcgtggcac gttctgccga atttggcgtg ctggtgcgaa
     2581 atattgaggc actacaagca agcagtgaaa tcgacaccct agtgttcgat aaaaccggca
     2641 cactcaccac tggcagaatg gaagtgtcgg atgttctcac ctttaacgga tttgagcaaa
     2701 agcgcttgct acaacttgct aaaagtgtag agcaacacgc ctcacacccg attgcgaaag
     2761 cgattgcaaa atttgccgaa aatcagaccg cttgtggtgt aaccgatgtg caagtgttga
     2821 aagggttagg catttcagca aaatatgaag gcagtacaat cagaatggga aattggcaat
     2881 ttgtaggcga aaccattcaa gcaaatcttg cctccctatt gcccgctaaa gagggggatt
     2941 tttcctcaaa aatttttgtt tcggtggata atcaactcgc cggtgtattg tcggtttcag
     3001 accaacttcg ccctgaagcg aaagcaacca ttcatcaatt ccaagcggaa ggctatcaat
     3061 gcgtgatgct gaccggtgat cgccaacaaa ctgccgacta tttcgccaac gcattggggt
     3121 tagacggcgt gattgcggag gtattaccgg agcaaaaagc ggaaaaaatt cgagccttgc
     3181 aagcagaggg taaaaaagta gcaatgattg gcgacggcat aaacgatgct ccagctctgg
     3241 ctcaagccaa tgtgggcatt gcgatgcaca atggttcaga tattgcagtg gaaaccgccg
     3301 atctttcgct gatgcgagaa gggctagcac cactgatgca aattctaccg ttctctaaaa
     3361 aagtgctgaa aaatatgaag caaagtttgc tcggggcttt tatctataat gttattgcga
     3421 ttcctattgc tgccggcgtg ctttaccctt tcaccggctg gctactcaac ccaatgattg
     3481 ccgccattgc gatgacattg tcgtcaatta ccgtggtgtt aaatagtcaa aggttgttga
     3541 aataatttaa gcggtcaaat ttgcatattt ttttgcaaat ttgaccgctt gtaatcacta
     3601 atccgccaaa aacagcggcc caagaggtgt tttcggaatg ccaaaatgct cagggtaatg
     3661 cacctcgacc aaatatagcc cctcggcttt cgctgtaggg gcagcttttt cccggtcacg
     3721 ttgctccaac acccattttg cccattccac aggctgtctg ccttgcccga tttcgagcaa
     3781 tgttcccaca atattgcgaa ccatatgatg tacaaaggcg ttggcttgaa tatcaacaat
     3841 cacataattg ccttgccgag acacatttaa atgatgaata ttccgccacg gcgtattaga
     3901 ttggcatttg gcggcacgga aagaggaaaa gtcattctcg cccagcaaat actgccctgc
     3961 ttggtgcatt ttgcgttcat caaggggaaa gtgaaagtgg gtaacacctt taggtaaaat
     4021 tgccgaccgc agtttttggt taaaaataat atagcggtaa cggcgggcgg tggcactaaa
     4081 acgggcgtga aaatcctcat tcaccgctac cgcccatttc accgcaatat catcgggtaa
     4141 atgagcgtta gtgccgaaac accagctttg tagcgggcgg tttgcttgcg tttcaaaatg
     4201 cacgacctgc cctgtgccgt gcacaccggc atcggttctg ccggcacaaa acacttctac
     4261 gggcgaattg gcaacaaccg acaacgcctg ctctagctgt tgttgtacac tctctaccgc
     4321 ttcttgtcgt tgccagccaa aataacggct gccgtcatat tcaataccta atgcgatttt
     4381 cattttaata ccttgataaa aagaggggcg aaaaattttt cgcccccaca gtaattgata
     4441 tttgcaatta tttattcaat aagcctaaaa attctttgcg ggtttctcgg tcttctaaga
     4501 aaacaccgcc aaaggcagaa gtaactgtat agctattggt gtcttttatg ccacggcatt
     4561 tcacgcaaaa atgggtggct ttcacataca ccgcaacatc gtctgtttct aaaatagttt
     4621 gaaaggcagt taaaatctgt tcggtaaaac gctcttgcac ctgcggacgt tgggcaaaaa
     4681 actgcacgac acggttgatt ttcgagagtc caatcaccca ttttttcggg taataggcta
     4741 ccgctacttt gccgtcaata gtaacaaaat gatgctcaca ggtagaagtt aaagtaatat
     4801 cgtccaccag caccatttca ctgactttca ttcggttttc aatattggta attttcggga
     4861 aggtagcata atcaagcccg ctgaaaattt catcaacata cattttcgcc aaacgatgag
     4921 gcgtttcttc taagctgtca tcacttaaat ctaaaccgag caattctaaa actgcctgca
     4981 tatgctgctg gatttctgct cggcgactgg ctttatcttt ggtatgagta acagtcggag
     5041 tttcaatgcc ttttgccaac aaggcttggc gaactttttg agcctccggc gaaagcgtgt
     5101 tttctgtgat agttaattcg ggcgagatcg ttgtcattgg ttttcctctc aaatgtaagc
     5161 tgaagattct aacaaattga catcaaaaaa aatagctcta aaatgagcta tttcagccat
     5221 aaacaccctc tttatttatg caaaatatac agtatctctt taatgccgac ctgattcccg
     5281 aacatcaagc tgaatttgtg cagtctctct taacttgcaa aaattttgac aattccgacc
     5341 gcttgctagg cttctcaaaa gggcgaggta cgacttggtt tttagatacc tctgctgaac
     5401 taggtatcaa tgtggtgctt cgccattatt atcgtggcgg cttgttcggt aaaatcatca
     5461 aagatagtta cttttttact cgctttgagg ccacccgagc gtataaagaa tttttcttac
     5521 tgcaacaaat gttagcttgg ggtttacctg tgcctcgccc tgtggcgatt aaaatagaaa
     5581 gacatttttg ttgctatcgt gccgacatta tgctcgaaaa gctagaaaac acacaagatt
     5641 taagcaaaat cttgcaatcc cattctttat cgaacgaaca atatgagcag atagggaaac
     5701 tgattcgcag tctgcataac catcaaattc accattccga cttaaatatc cataatattt
     5761 tgcttggtaa tgatggcaaa ttttgtctga ttgattttga taaatgcggc attgagccgg
     5821 gcgaaaattg gaagcaaaat aacctagacc gcctgttacg ctcgtttaag aaagaacaag
     5881 ggcgattaaa tattttcttc agcgaagaaa attggcaggc tgttttgaga ggatatactc
     5941 tctaagaaac aataatggca caagcttaga aacttgtgcc atcaaatcat caatattaac
     6001 tacttcactt cacgaatcat aatttcagac ggaatcacac tgccttgcca gtaaagttca
     6061 gaagctactt tttccgctaa tgcgaggtag gcttggctga tttcgtgttc cggagctgcc
     6121 accaccgttg gcacaccgct atctaaatct tcacgcagac gaatatgtag tggtaattgt
     6181 gctaacactt tagtgccata tttttgggcg attttttccg ctccgccggt gccgaaaatt
     6241 gcctcatggt gtccgcagtt tgagcagata tgcattgaca tattttcaat caccccaagc
     6301 actggtactg agactttctc aaacattgag atccctttaa tcgcatctaa taaggcaata
     6361 tcttgtgggg ttgttactac caccgcaccg gtcaccggaa tttgctgtga aagcgtaagc
     6421 tgaatatcac ccgtacccgg tggcatatca atgaccaagt aatccaattc attccaccaa
     6481 gtttcattta aaagctgact taacgcactg cttgccatcg ggccacgcca aatggtggcg
     6541 ttatcttctt ccattaaata gccgatagaa ttagattgca agccgtgagc ggtaatcggc
     6601 gtgatgtgct tgttatcagg agaagttgga cgttggtctt ttgctcccaa catatgcgga
     6661 atagatgggc cgtaaatatc cgcatctaaa atccccactc ttgtcccttg tgctcgtaag
     6721 gctaaagcaa gattaactga ggtcgttgat ttccctaccc caccttttcc tgaagtgacc
     6781 gcaatgatat tttttacccc attgactgcc gggtgtttat tcgcccgttt taaggtcgca
     6841 atttggtaat ttaataccca ttttacaccg cttgaacctg ttacttgctt taatttagcc
     6901 tctgtttcgg cttttaaggt ttcaaaacca ctgttccacg caaatggcat cgtgatttca
     6961 attctaagaa tatcgccccc taattctgct tttttaaacg cattaagggc aattaaatct
     7021 ttctgtaaag tcgggtggga aaattgttgc aagattgctt taatttcaac aagttgctgt
     7081 tcatttaatt ggttcattgg ttatccttgt ttgctaaatt gcgttttaaa tctttgctat
     7141 aaattacttc gctatcgtta ttcaaatcaa tacccaaaag ggaggaaaca atcccaaccc
     7201 gatgatggta ttgaaataat ggcaatacgg caacatcgct ataaagctgc tcgctaattt
     7261 cttgaataag tgactctctc gcttctgcac taagcgtttc tgtttgtaaa cgatttaatt
     7321 tttgatcgac tatctcactt ttatagccgg aatgattatc cgggctcatt gaatgaaact
     7381 tctgcaaaaa tacaatcgga tcaggataat ctgcacacca gcctgctcgt gctatctggt
     7441 aatctttttg ttcccttact ttatttaaag tctgccaatc aaccatttta ggtgtaatat
     7501 taaataattc tgattgagaa agggctcgag taacttggtt agcaatatta atgctattct
     7561 catcatataa caaagtcagc tttaaaggat tataagggct aattcctgct tttgttaata
     7621 gctgctcaac cacaacagga ttccaacgct tttctctatc ttttactaag ctatgtggaa
     7681 ttacagactg actcggaacc ccatattctt gcccactatt tgctgaagcc accattgtcc
     7741 ttattgcttc acgaatctct cgtttagcta ataatggatc atcaaaattg aactcatagt
     7801 aataagagca caaacgcgga aatttcacga tattcgtttt tttatttaat aaaggattct
     7861 cgacaatatc aaaagcagag cagttttgga tagttgtaat taaatcatac tctatagttt
     7921 gaaagggaat ttcttgggtt cgagccttta acaccatttt ttgagcatct agtttctcga
     7981 gacggtaaga cgcattgctc acgaagttat ctatggttgg agcaatccct tgataagtag
     8041 gtaataatgc ggaatgtgcc agcatttcag gcaattggtg atttgggtga tttagccgaa
     8101 ttctcaatgt atgcgcattt aatgcctcta caccgagttc ttcaactgac tttatttgct
     8161 cttcaatcgc ttttgcattt tctataccca tatagatgag atatttagac aatacagaat
     8221 gattttgagg atctattaaa cgtcgccagc ttgctacaaa atcttgtgca gtcacaggtt
     8281 ggccattaga ccacacagct ttctcatcta aaataaacaa ccactctttt tcatcttcag
     8341 taaaccaatt ctgagcaatg gccggaacga catcaccttt tctgttgtag gccgttaaac
     8401 cgactaatag atctcttaaa ggagcagcat ctgcagaagc tttaatttta tgtgggtcga
     8461 gttgaaatac agcagaataa attgcacgtt tgagtaaagt atcactctgc cggttttcta
     8521 cccagacaga ttgaatggat tgagggcaaa ttaattgatc acaagatgta ataagcagaa
     8581 tgcaagcggt aacttttgca atttttttta caaatgtaac cgcttgtaag gatttcaaca
     8641 taaactcccc aaaggttaat taagatttat tttacaagaa gcacaggaaa taaagttgta
     8701 attcctgcca caataatttc aattcccagc gccattaaaa tcagccccat gatacgagta
     8761 acgacattag atcctgtttt gcctaatttt ttcaccaaag gggctgaata gcggaataaa
     8821 atataacaaa ttaatgcaaa tacaataatc gcaatgctaa agccaacata gtcttcccaa
     8881 gtatggtagc gggttcccca cacaatggtt gagccaattg cccctggtcc tgccataatc
     8941 ggcattgcta atggcacgac accgatattt tcgtattcag taatatcttc atttttctct
     9001 tctttatttt gtttgtgttc acctaattta ccgctaatca tcgtcatcgc aatgcttaca
     9061 atcaaaatgc caccagctac tctaaaagag ctaagtgaaa tgctaaacgc attgagaatc
     9121 agattaccaa aatagaggct gactaataaa attactccaa tagaaacagc ggtgattaag
     9181 ctggtgcgat ttctttcccc ctcatattgg tgagcggtca tactgaaaaa aataggcaag
     9241 gaaccaaaag gattgactat agcaaataga ccaatgaaga attggaggta gatggcaaaa
     9301 ttaataatga tatccacaaa aactttctca aacaacagtg tttcgggcgc tattatatcg
     9361 gttaatcaag gtagatacaa accaaaagca cccagcctaa aggacggttg ggtgcttttt
     9421 gataaaatga aaggcttgtt agtgtgacga acgttgctgc ataaaatctt catttacctc
     9481 aattgaagct tttgcacgta gcgattgtaa gaattcatta cgtaaaatta aacgattagc
     9541 ttgttcaaat tgtggcgcca atgtcttaaa ctgttcagca ttcccttccg taatgttatc
     9601 taaggcaaca ataactacat cgcccttttg attacgtgcc atttgataag tcgttttatc
     9661 ttgcgccttt ttcattgcga aaatcgttcc agccaatacc gggttttcta cttctgcttg
     9721 catataaact aaagtttgtg gcgcattaaa tttcacgtcc actgatttcc cttcattcaa
     9781 ggcttttaca ttttcttcta ctttcgccag caacgctttt tccgcttttt ctgccttcac
     9841 aaaattttca actgctgctt ttgcttcatc aaaagtttgt ggacgttctg catcataatc
     9901 actcactctc acaaacaatg tctgtggatt tgcatcattc ccaacatcta aagcatcaga
     9961 attttgttta ttttggcgta gctctccttc aaacaaaact tttaatactt tctcattttg
    10021 taaagcagta ggtacgtttt cacgggtaaa cagatccgtt ttttgcagtt ccacattacc
    10081 ggctttcgca acttcttcaa gtgaagaatt attctcaaag gctttatttg ccatttcgcg
    10141 cgcaactgta aaatactcag ttaacactaa ttcttggcga atagtttggg caattttatc
    10201 tttcacttgt gctaactcaa tcacttgctc aggtttacgc tccaatactt tgatgatatg
    10261 gtaagcatta tccactttca ccgctgcact catctggccg gcagttaaat ttgctacagc
    10321 atcttcaaaa gctttcggga aagtgccagc ttttgcccaa cctagatcac caccattatt
    10381 tgctgataaa gtatcgctag atttgttttt tgccaaagta gcaaaatctt ccccattttt
    10441 gagcgcttgc tcaatagcct gtgcttccgc ttcactagcg acttgaatat gagctaaatg
    10501 ggcttcacct ttagttacat aatcggcttt attgcgatca tagtaagttt gaatttgctc
    10561 attggtaatc tcaactttgc tttccacatc ttttggagaa agagtaacgt actcaaccgc
    10621 taatttttca ggtgctaata atttagtttt atttgcttcg taataggctc gcaattcttg
    10681 ctcggaagcg gtctgatttt ccatttcttt tgcaactgaa aattcggcta aacgcacttc
    10741 acgttgttgc aacagtaatt ttgctaacaa tgcctgctgt gccggtacat taaaatcact
    10801 attgataatc ccctcttgta gctgggattg caacatacct tcctgcacaa tcgctgcata
    10861 gccatcggca cttaaattat tgtggcgtaa tgtttgttgg tataactcgt tactgaattt
    10921 accatcttgt tgaaacatct ggctgtttac aatttcagat ttgatttgat cagcactaat
    10981 acctagtttt aactcttttg catactggcg cagaagctct tcatcaatta atccatttaa
    11041 taccgattga ttaaattgag cagcatactc cgggctatcc attaaatccc aaaagcgact
    11101 ccccagttca gcatttaatc tattttgctc acgattaagc gtgttattaa ataattgctg
    11161 actaatttct tccccattta ctttcgctac agaattatct tgtgaaatca atcctgtccc
    11221 aattccaccg attacaaatg aaatagagac taatgcaaaa ataattttaa agaccggccc
    11281 atttgtccgc tcgtgcattt tttcaatcat ttaaaaattc ctaaattact caaaaattgt
    11341 cgctgattat actctttctc aaatgagaaa taaacttgca aatttttatt gaaatttaac
    11401 cgctttctct ttaaaattca cagtccctgt cgtagctgag ttagagatcg gctattgatg
    11461 tattatcaac ccttaacaaa aggaaattaa aatgtctcta agcgtagaag caaaagcaaa
    11521 aatcgttgct gaatttggtc gtgatgcaaa agacactggt tcttctgaag ttcaaattgc
    11581 attattaact gcacaaatca accacttaca agcacacttt gctgagcata aaaaagatca
    11641 ccacggtcgt cgtggtttat tacgtatggt ttcacgccgt cgtaaattat tagactactt
    11701 aaaacgtact gatcttgcta aatattcgga aactatcgca cgtttaggtt tacgtcgcta
    11761 atttcaaata ttagatatga gagccgagct gaaaagttcg gcttttttat aaattttatt
    11821 cgaggaaaaa atatggcttt tgcgtcatta tttacattat tagacgatat tgctgccgtg
    11881 cttgatgatg tatcgatcat gactaaagtg gctgctaaga aaacagcagg cgtaatcggt
    11941 gatgatcttg ccttaaatgc taatcaagtc agtggaaaga atgtggtgcc agaacgagaa
    12001 ctaccgattg tttgggctgt agcgaaaggc tcattaatca ataaagtgat cttgattcca
    12061 ctagcgttgc tgctatcggt ctttttaccg caggctatta tcccgctatt aatgataggc
    12121 ggtgcatatt tatgttttga aggcgtagag aaattactcc atcgtctatt acataaaaac
    12181 aatcaagctc attctgatga aaccgaaacc ctttctgaaa aagataaaat taaaggtgca
    12241 attcgcaccg attttattct atcagcagag attatcatta ttgcgttagg tgttttgcaa
    12301 gactcttcaa ccctaaccca aattttatct ctctccgcta tcggggtcgg aattaccctg
    12361 tttgtttatg gcttagttgg attaattgta aaactagatg atatcggttt atggttaatg
    12421 cagaaaaaaa gcacattctc acaagcggtt ggaaaaggct tattatttgc aatgccgtgg
    12481 tttatgaaag gactttctgt gattggtact attgcgatgt tcttagtcgg tggtggtatt
    12541 tttacccata atttaccaat gattcatcac ttcgtagaac aattcggtat ctctccccat
    12601 ttttctactc tggttgattt tgcagtgggt attgtggttg gtattattgc atgcttaatt
    12661 attttacctt tgatgaaatt attttctaaa aaggcgcact aatccccaaa agcgtagctt
    12721 tggttaaagc tagcttttta tctcttgcta taaaaaaata gcaggtttca agcctgctat
    12781 ttttttaatt attataatga gttagactca gtggctgttt gcggtaaggc taatggctca
    12841 ttaactttag actgagtagc catattcacc tgtttgagat tttcctcacg aatacggttt
    12901 gccattaatg tatcccccat ctgctctgcc acgtgcagtg ccataatacg atcatcagca
    12961 acacattcat catgagccaa taacaattca aactgagact tcgctttttg gtattgccca
    13021 tctcgtgtat aaatatagcc aagcgctcta gcataatcat cggtatattt aacattcgct
    13081 ttatctgccc gttttgctaa tacttttagt agcttactgt cagaatcaat ttgtaaacgg
    13141 gttaattgca caaataaacc ttgtaattgc tcatcttcaa atttcttcaa cgtttctaaa
    13201 gcaatttctt gtgcagattg atgatcgtca ctatcaatta aacgcttgat gacaccgaca
    13261 cgactataca ccgatttacg acgacgattt ggttggtttt cccaccaaga aagcaagcct
    13321 tcctgccctt cttcctgtaa acgctcatct tgtaaaccat catcaacgaa atactctaac
    13381 tcagcatact cttctgcagt taagaaatta cgttggccga tttcaactaa taatctatct
    13441 aacgcaacat aagctctgga ttctttataa atttgaatcg ctaagcgtaa tacctcatcg
    13501 ctatgaggtg caagctctag taggctatca atcgcagttc gggcagccgg taattttcct
    13561 tgttgtaata aaattcgggt tcgtaccaac tccactgcaa cattattcgg tccagctatt
    13621 tcagttgcct taattaaata tttatttgca gctaaatcat caccattttg ctgagcagct
    13681 tccgccgctt taattaaatt cagtacaggc tcatctgcat gttttgcatt tttactaaag
    13741 agtttttccg cttttgagta attcccttca ctcatacgca ttaaaccttc cagtgtttct
    13801 tgctgagctt ttttatgctt acgagttgag aaccagttat aagctccatt actcatacgg
    13861 catattttag tgacaatcca ttcaagtaaa taaactaccg ccattgccaa cacaaaaaaa
    13921 accacaagca ttacaatgct catttcaatc acggtagttg ctgtttcaat tctgacataa
    13981 ccttgatttc cggctaaata aggcccagag attagtccaa ctaataataa aagcatcaaa
    14041 aagagcgttc taaacataat ctattctcct ttttattatt gtgctgaaag aggcatcgca
    14101 tcttgctctg cttttacagg ctctgcttgc tctaattctt tttcagcttt tatttcgact
    14161 ttctctattt tttcaggggt tttattaagt tgctgagcaa tcacctttaa gctttgtaat
    14221 gaagttggag catccacata aatagtttgt tctgccaact catctagctc tttcaagaaa
    14281 tgttgcacat tttcatttga agtttcaaaa taacttctta cccaagagcc taccgtttgt
    14341 aacgattttt tataaagttc gctttgctgg cgaggaacag ctaaaatcgc aatttgtaaa
    14401 cgcaagcgaa tgttttcacg caaataaatt tcttgattcg gtgcaacaaa ggctttctca
    14461 tctgctgcat tacgtttcga tacacgaata aaatgatcta aaaatgaagc agcacttttt
    14521 tctaaatttt tctcccaatc cgcaagagaa tcacttactt gcccatcttg tttgctattt
    14581 gaagcttgtt cactttccaa aatcggcaaa tcatctaatt tattcgctaa atttgcgaca
    14641 cgctgcatta aggcattttg atcgatctga tgcaatgcgg ttaatgtatt taaatcagtt
    14701 ttgattgcct cacgaatgtg aatcgtattc ggtgcttttg ataaaacttg atctgcctct
    14761 aacaataaat ttttcgctgt ttcaatgtca ttatctaaca ccactttacg agccgcatta
    14821 ttcaatagga aatctgcctc agataatagc cagaatgtgt tatccgaacc agaggtatta
    14881 tttagctttt gcagttgaag ctgcaaacta ctaatttgct gggtataacc attttgggct
    14941 gtttctaaag ctttaatccg ttctaaagct ttttgatatt ccgtgaccaa ttcggcaatt
    15001 tgtgcttttt cattttcgaa atttggcatc tcaaccatag tttgagtagt aggctgattt
    15061 gctttagcag atactgcctg aatttgagat tcaacctctg caaacttttt atttgccata
    15121 taatgaccag ctccgccaac cgctaaagcc actaatagtg caactaatgc caagcccttt
    15181 ccgcccgatt tttgaacaac cacttgttct tttggcgctt tttgcatttc tgtttgaata
    15241 tctttctcta tagcttcgtt cactacatct tcctcaatct ctttttttgc aaaagatccc
    15301 gctgaatcga ccgcttgttg tgcctcttct accacctttt cagctgaatg ctctaaatgt
    15361 tcagttactt ttttagatct tgacatactc gccacctcta gttagatttt cccactttaa
    15421 ataataatgt attcatcaaa gttacattat cggctttatc cgatacccta atcttatctt
    15481 cttgccagcc catttgttta gctatctttg caatccgccg gctcactaca accagatcac
    15541 attcaaataa ccatgctcta caatctgctt tcgcttgttc ataaagtgat cttaaaattt
    15601 cactactggt gatcacaata gtatctactc ccaagcgttt acataagctg attttttcgg
    15661 gaatatcatc ggtaaccggc tctctacgat aacactccaa atattgaata gttgccccac
    15721 gcaagactgc agtttcagca agtagctcac gcccagaatc ggctcttaga attaaaatag
    15781 ttttatcagt tagattctgc atttcaggta atgccaaaac cccctcgcta ttttcaaatt
    15841 ctatcggata aatgaccgct tgttcagctt tttctgttaa atatttcgca gtccgttgcc
    15901 ctaccgcaaa atatttcaaa tctgaacgaa aatggaaccc ggtatctact aatgtttttg
    15961 cagcatagtc cactgcattc ggcgaaacaa caaatacata atcgtctgat tttagccgag
    16021 aaatagccga aggaagcaaa ggtaattctt taccggcttc aatcgtaaat agcggttgat
    16081 gaatagcaaa aatttgctgt tcattcaaca tatctaccaa ttcttgcccc cgactatcca
    16141 ggcgtgtgac caacacattc attattgtac gttttcgtta taaaccgcag ctaaaatttt
    16201 atctgcacct tgagcaagca actgttccgc caccaaaatg cctaattgct ccgcctcttg
    16261 cttatgtcct tttgccgaag cccgaataat ttgtgagcca tctaacgatc caactaacgc
    16321 attaagcgtt aattcatcgc cctctaatgt agcataacca ccaatcggca cttggcaacc
    16381 gccttgcaaa cgggtattca ttgcacgttc tgccatcacg caacaagcgg tcgaactatg
    16441 gtttaatttt gcaatgtagt tcaaaatccg ttcatcattg gctcgagtct caatccctac
    16501 tgctccttga ccagctgcgg gtaatgattg ttccacagaa atatagctac ggattcgctc
    16561 ttgcaagcct aaacgaatta agccggcaga ggctaaaata atcgcatcat actcgccatt
    16621 atctaatttg cttaagcgag tgccgacatt gcctcgcaat gatttaacct ctaaatgcgg
    16681 atatttcgcc attaattggc actgacggcg taagctcgat gtaccgacca cagcaccttt
    16741 cggcaaatct tctaacgaat ggtagttgtt cgacacaaac gcatcacggg gatcttcacg
    16801 ttcacaaatc accgcaagcc ccaagccttc gggaaagctc atcggcacat ctttcattga
    16861 atgcaccgca atatcagctc gattttctaa aagggctaat tctaactctt tcacaaacaa
    16921 gccttttccg ccaattttgg ctaatggggt gtctaaaata atatcgcctt tcgttaccat
    16981 cgtaaccagt tcgacagata attgcggaaa atgtttttct aattcgcttt ttacaaaatt
    17041 tgcctgccat aaggctaacg ggctttgacg ggttgcaatg cgtaaaatat ctttcataaa
    17101 ttctaaaatt aaaacattga gttaatgaat tatcctacca ctttttagct gaactgccaa
    17161 aaataatcgt ggatttcgct ttgcatt
//
LOCUS       DANLXB010000038        17084 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLXB010000038 DANLXB010000000
VERSION     DANLXB010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17084
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(92..1225)
                     /locus_tag="PXD41_000813"
     CDS             complement(92..1225)
                     /locus_tag="PXD41_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL6288366.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1242..2054)
                     /gene="dapB"
                     /locus_tag="PXD41_000814"
     CDS             complement(1242..2054)
                     /gene="dapB"
                     /locus_tag="PXD41_000814"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL6288367.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2105..2482)
                     /locus_tag="PXD41_000815"
     CDS             complement(2105..2482)
                     /locus_tag="PXD41_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288368.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2472..2945)
                     /locus_tag="PXD41_000816"
     CDS             complement(2472..2945)
                     /locus_tag="PXD41_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288369.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3013..4101)
                     /gene="rlmM"
                     /locus_tag="PXD41_000817"
     CDS             complement(3013..4101)
                     /gene="rlmM"
                     /locus_tag="PXD41_000817"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL6288370.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4101..4493)
                     /locus_tag="PXD41_000818"
     CDS             complement(4101..4493)
                     /locus_tag="PXD41_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL6288371.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4600..6001)
                     /locus_tag="PXD41_000819"
                     /pseudo
     CDS             complement(4600..6001)
                     /locus_tag="PXD41_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6156..8513)
                     /locus_tag="PXD41_000820"
     CDS             complement(6156..8513)
                     /locus_tag="PXD41_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL6288372.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8649..11255)
                     /gene="acnB"
                     /locus_tag="PXD41_000821"
     CDS             complement(8649..11255)
                     /gene="acnB"
                     /locus_tag="PXD41_000821"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL6288373.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11275..12522)
                     /gene="icd"
                     /locus_tag="PXD41_000822"
     CDS             complement(11275..12522)
                     /gene="icd"
                     /locus_tag="PXD41_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL6288374.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            12756..14036
                     /locus_tag="PXD41_000823"
     CDS             12756..14036
                     /locus_tag="PXD41_000823"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL6288375.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14109..15338)
                     /locus_tag="PXD41_000824"
     CDS             complement(14109..15338)
                     /locus_tag="PXD41_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288376.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(15305..16294)
                     /locus_tag="PXD41_000825"
     CDS             complement(15305..16294)
                     /locus_tag="PXD41_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6288377.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            complement(16310..16828)
                     /locus_tag="PXD41_000826"
     CDS             complement(16310..16828)
                     /locus_tag="PXD41_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6288378.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            complement(16838..16909)
                     /locus_tag="PXD41_000827"
                     /pseudo
     CDS             complement(16838..16909)
                     /locus_tag="PXD41_000827"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(16916..>17084)
                     /locus_tag="PXD41_000828"
     CDS             complement(16916..>17084)
                     /locus_tag="PXD41_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6288379.1"
                     /translation="RVFERSAEKKKIHNLISRAHYDMATNEDSASEHLELFGEDIAED
                     SFDYPKPEKLI"
BASE COUNT         4902 a         3882 c         3207 g         5093 t
ORIGIN      
        1 ttctctcctc ctttattaaa aaagaaaacg gtcagattgg taaaatctat acctaatatg
       61 accgcttgtg aatacaaaaa aattacttca attacttcaa ctgtttaaag gcttgcagta
      121 aatcagcttt aatatcttca acgtgttcta aaccaacgga aaaacgcagt aaattattcg
      181 taatgcctcg tgtaatacgt tctgcttccg gaatatccat atgggtttgt gttgcaggat
      241 aagtaataaa actttctgca ccgcctaaac tttccgcaaa ggtaatcaat ttaattgcct
      301 tgagaaattt cgctacccac tcttcttttt gtaaacggaa agataacata ccacttttgc
      361 ctgaatataa cacgctgtca atttcaggtt gctctgctaa gaatttagcc agttcggtgg
      421 cattagactg atggcgttcc attcgtaatg ccaaggtttt cataccacgc acggcaaggt
      481 aagaatcaaa tggcgacagc actgcaccgg cacagttttg gaaatagaat aaacgctcgg
      541 tcaaattctg cccgtttact ttggtagcat cagaatcttt cgcaacaatt aagccggcta
      601 acacatcatt atgccccgaa agatacttgg tcgcactgtg aatcacaata tcagctccgt
      661 gctcaatcgg acggaataac gctggggtta agaacgtatt atcaacgatc aacattaaat
      721 tgtgtttttt cgcaatttta gcaatggcag caacgtcgca ctcctccatc aatggatttg
      781 acggcgtttc cacgaaaatc gccttagtat tcggtgtaat agctgcttca atcgctgcta
      841 aatccgctgt attaacataa accggcttta atgtgccgtg atttttgtgg ctaaaatcaa
      901 acaagcggta agaaccacca taaacatcgc tggaaataat ccattcatca ggtgctttaa
      961 ataatgacat tactagctga atcgctgcca ttccagatgc catcgcaaaa ccggcatcac
     1021 cgccttctaa atccgcaatc ccctgctcta atacagctcg agttgggttt ttggtacggg
     1081 tgtaatccca gccggtagat tcgcctaagc catcacgccc gtaagcagtt gataagataa
     1141 tcggcattgc caccgcccct gtacgaggat cagttctgtt accgatttgc actaatgtgg
     1201 tttcaatatt attgaatttt gtcattgtta ttatccttca attacagatt atttagatcc
     1261 aatacgtctg tcatatcaaa caagccattt tgtttgccat ttaaccattt tgcagcacgc
     1321 actgcgccat tggcaaacgt cattcgacta gaggctttat gtgcgatttc gacacgttcg
     1381 ccttcatcag cgaaccatac actatgctcc cctacaacat caccggcacg aatagtagca
     1441 aagccgattt catcacgttt gcgttcgcct gtaataccgt tacgttcaaa tacgccatga
     1501 gttttcaagt cacgcccaag agttttggca atatgttctc ccattgataa agccgtacct
     1561 gatggtgcat caactttatg gcgatggtgt gcctcaatca cttcaatatc acaataatcg
     1621 cccattactt ttgctgcttt ttcgagcagt ttaaacacca gattcacccc aacgctgtag
     1681 tttgaggcaa aaacgatacc gattttttca ctcgctgctt tgattgcagc tttacctgca
     1741 tcatcaaaac cggttgtgcc aatcaccatt tgtttatgat gagccacaca aatatccaaa
     1801 tgttctagcg tgccttcagg gcgagtaaaa tcaattagta aatcaaaacc tgctacattt
     1861 tgggcgacat catcagaaat caccacacct aatgtaccaa ccccggctac ttcaccagca
     1921 tcactaccta ctaatgatga acctttacgc tcaaaagcag accctaattc tacgccttgt
     1981 gcattatgga cggcttgaat taattgacgc cccattcgcc caccggcacc gacgattcca
     2041 atttttaatg tcatatttgt tcttcctttt tatatttgtt ttttacaagc ggttacattt
     2101 ttaattaatt ttgcaaatag ctttctgatg gcaatttaaa aggtgggtga gaagtaaaat
     2161 caacaatttg aataaagttt tcacctttca cataatgtaa aatatactca gaagtataat
     2221 taccaaatcc ttgactggta tcatattctg gaatgccgat atgataatgc cataaagaat
     2281 atttttgtgc tttagccacc ttctctgccc aataaggatc attcgttggc acatcatcag
     2341 aacttttatt tcgaccagct agattttcca atccataaat ttcaacgtgt tgtttaaact
     2401 gcaggatttt gactagatct ttttcaggca aatattgcaa ttcggctgaa atttttgtac
     2461 caaataaaac tttaatgccc atttgcaaca cctttcaacc agtttctaaa ttcattaaca
     2521 ttcgttatat ctttaggcac ttcgtgaaaa gtatcattta accgctcttt cattcgctct
     2581 aagtcaaaat taaatgcggt tgcttgagag agttgctgtt caattttgcg aatattggac
     2641 ttcatattat ccaatatagc cattgtcctt gagccatcag taaaatactg ttgggtatcg
     2701 aaaatcacca ccttattttg atttaggtat tttttgaaat cgtttaaatc aatttcagcc
     2761 caaaagtttg gatttttttc gatagtttca atacaggcaa ttaataattg atttgccatt
     2821 gtaatacgaa aatttaacaa tgagatttgc tgctctgttg caggtttatc atcagctgcg
     2881 aaatcaaatg ccggataaat cactgcaagc gtgtcagcca tagataaggg taaatttttc
     2941 atcatctctc cttacggaag aagttgtcat tatctactgg attacttaaa aaaacaactt
     3001 attcatttta tgctattttt gccccatcac cgcaatatgt accgtaattt cctcacggtc
     3061 gtggtagagg tgtttagctt gcattttgaa ccaaaacccg tgtttcgtta gctcttcttc
     3121 caagaaattg aggcatagtt gcacttcttg ataacgtttt ttcatcggca gttttaggtt
     3181 gaaaatcgtt tctcgacacc aaccgttagt cagccatttt gcaatgagtt tcgagatacg
     3241 aatcggctgc tctaccatat cacaaaccag ccaatcgatt tgtttacgct taggcggttg
     3301 gaatttaaac ccatcttcag ggcaatgctc aattcttccg gtttcgtgta aacttgctgc
     3361 cattttgccg tgatcgactg catagacaaa aacaccacgt ttgactaatt gataagtcca
     3421 accacccgga caagccccaa gatcgacccc taccatcgta tcattaaagc gttttttctc
     3481 ctctgcttgc ggaataaaag ttaaaatcgc ctcttctaat ttaagcgttg agcgactagg
     3541 tgcctcagcc gggaatttta aacggggaat ccccataaaa aacggcgatt tattatggtt
     3601 gtacgcatag cccacatagc aagctcccgg acgagtaaat aaaatatgca agctcacact
     3661 accctgcata ttttccgatt tccccaacca accttgtttt ttcaatgccg accgtaatgg
     3721 cacagtaaat ttacgacaga aagttaataa ttctttcgct tcgttggtat ccggtgtttc
     3781 gacaaataca tcagaacttt ggcgaggatt aagttcggca tattgggcta aaatcggcga
     3841 aattcgatca ttttcagaca gattttgcaa caaatcccca acaaccaaca tttggcgaac
     3901 aaaaataagc tgttcaaact ttaacgcttg ggctaatcga tctgcttccc ctgcttgata
     3961 gcactcaaaa atcacatagc cactattttc tttaaggttg gcaaagccaa aaatgccctg
     4021 ttgtgcagct ttatccgtga tttcgcctgc tacctctttt tcaaaccctg ctcggcaata
     4081 taaggctaat ttattgaaca ttaggctttt ctcacactga tataaattaa cgcaatccaa
     4141 ccaagcataa agcagagacc accaataggc gtaagccaat gaatagtcgg cacatttaac
     4201 gccagtaagt acaggttgcc actaaaaagc agaatgccta acgcccaatt gcttccgatg
     4261 atgttaaagg ctttggctct acaaacgggt ggattttgcc caaaatttgc aatttggaat
     4321 aaacctaaag ctaaaatggc aagggtgtga aacatttgat atttaatccc cgtctcaatc
     4381 cagcctaagg ctttaggcga taattgagcc gataatgcgt ggctggctat cgccccaaat
     4441 gccacagtaa ataagccgct gaatgcggca attgctacaa atttgttttt cataagttga
     4501 agataggtat gatgttagat ggcttactat atcatattat cgaaaccaac aagcggtgaa
     4561 attttgcaaa aaaattacaa aaaatcaccg tttgtatgct taatggttca agataatatc
     4621 cacatcttcc gatttatcgt gaaccccaaa tctatctact aaggttttgc tggcctcatt
     4681 taatccgata atttctacct caacatcact ttttcgatat ttcaacacaa ctttatctaa
     4741 cgctgaaact gccgttacgt cccaaaagtg agcgtgggtt aaatcaatgt ggactttttt
     4801 cagttctgaa cgggtaaaat caaattgtgc gataaaatca tcagatgagg caaaaaatac
     4861 ttgcccgata acatcataac gcaattcctc tttctctata gcacttgttt taaccgccat
     4921 ataacgtcca attttattcg caaagaataa tgccgagagc aacacgccgg aaaatacacc
     4981 aagggctaag ttatgtgtat aaaccacaat tgcaacagtg actaacatca ctacattaaa
     5041 gccgattggg tgcgttttta gctcttttaa ggaatgccaa ttaaaggtgc cgatagagac
     5101 cataatcatc actgcaacta atgcagccat cggaatcact ctcaaaatat cgctcaaaaa
     5161 gaccacaaaa atcagtaata atattggcaa tgccctgccc tttacattca cggtttttat
     5221 cgctgtctgt ctctgtcatt tcatcaacaa tcgttgccgt cattaaagat tccaataacc
     5281 ctactgcggc caagctgaaa gaataaggca aaataatcca taaggtgtct aaattaagcg
     5341 gaatatcggg taataaaaac accggtaagg tatcgggtaa ttgccccata tccccaacgg
     5401 tacgaacatc aatgccttgc cataatgtga aaagtgttaa agcaataatg gtcactaatg
     5461 gtgagggaat gatttttcca atcaccggta cataaggaaa aagataaatg atagcaagcc
     5521 ctgctaccac cagtgcataa gtatgccaag ttgtattttg taactcaggt agttgtgcca
     5581 taaaaattaa aatggcaagt gcattaacaa acccaatcac tacggctcgt gccacaaacc
     5641 gcataagcga gccgagtttt aaccaaccgg caataatttg caacacgcct gttaataagg
     5701 tggccgctag catatattgt aaaccgtgat ccctcactaa gcctgctaat accagagcca
     5761 ttgcaccggt tgctgcagaa atcatcgccg gtctgccgcc cacaaaactg ataattactg
     5821 caatacaaaa tgaggcatat aaaccaattt gtggatcaac ccctgcaata attgaaaatg
     5881 ctatggcttc tggaattaac gccaaagcca ccactaaacc agagagaaca tcacctcgta
     5941 catttgaaaa ccattgttgt ttaattaccg taggcgaaaa ttgctgaaat aaagttgtca
     6001 ttattaccct taaataaaaa gaaaagccga gcaaagtcgg ctaaaaatga ggcgagagag
     6061 tagcaaatta gtgaaaagtc gtcaaataaa caagcggtct tctttcgctc tttttttgca
     6121 aaaaatagta gaaaaatgac cgcttggatt aattgctatt cactaaaaaa aggggcttta
     6181 aacaccgtca cttcaggtgc atctcccaca tatttttcca cttgaaccgt ggtagtgttc
     6241 ggtgcattgc cctgcccgag ttttgatgaa ccctcattac gggttagcac attcgggttg
     6301 ccgtttttgc atagtggagt atctgttttg cctaaatctt gcgggtcata ccaaccacct
     6361 tcgtataacg ctactgtgcc ttgaatgatg ccatcagtca ccactgctcc tgccaacacc
     6421 tgccctcgct tgttaaaaat tcgcacaata tcaccgcttg taatgcctct gtcagcggca
     6481 tcttttgtgt gaattagcat tggttctctg ccgtttacct cgtaatattg acgtaatgag
     6541 gagtaagcaa gctggctgtg taaacggtat ttaatatgcg gtgtaactaa tgccaacggc
     6601 tcggcttcgt tggttttgcc tgaatattcg tgatgttcaa accaagtcgg gtgtccttta
     6661 caatcttcat aattcatctt ggcaatggtt tcggagaaaa tctcaatttt gcctgatggc
     6721 gttgccaatt tgtgtttaat cggatcagta cgataatctt gatagcgaac gaaagtatta
     6781 ttttgatgtt ctgcctcaaa gctcaacact ttattttccg cccaaaatgc ctcgaaatcc
     6841 agcaatggcg tattagcttt ttcccccgcc tcaaaggcaa cttggtaaaa ttccttaagc
     6901 cattccattt cgcttttgcc ttcggtaaat gcttgttctt taccggctcg tttcgctaat
     6961 tcggcaaaaa tatcgtaatc attcttcgcc tcaaattgcg gttcaaccac ctgtttcatc
     7021 gggataatat gttttgctac ataatcaccg gcaacggtga gatcgtttcg ctcgtagctg
     7081 gtggttgcgg gcaatacaat atctgccatt cgagcggtcg gtgtccagta acattcattg
     7141 acgatcatcg tttccggctg ttgccacgct ttcactaaat agttggtatc cgggtggtga
     7201 gcaaacggat taccccccgc ccaatagact aatttgatgt tcgggtaatg taatgtttgc
     7261 ccgttgtaat cataaggctg attcggtttg agcaacgcat cggcaattcg agacaccggg
     7321 aaaaacggca tatcggggtt aggtttacct gcattgattg cccctaaacg aacaccggaa
     7381 ttaacattta gcccattggt agaataacga taatttaagc cgaaaccgcc gcccggcaag
     7441 ccaatttgcc cgagcatagc ggcaagagtc actaacgccc agtggctttg ctccccgtgt
     7501 tgcaggcgtt gcaagcccca gccggacatc aacattgtgc ggtgagtaac aaaatcattt
     7561 gctaaggttt taatcacctc ctccggaatg tcacaaattt ggctcgccca ctctgctgtt
     7621 ttaggtaaat tatctgcttt tcctaacaca taatcagcaa attgctcgaa accaacagta
     7681 tatttagtta agaagtcgtg atcgtgcttg ttttcagtaa taagggtgtg ggcgatccct
     7741 aaaatcagtg caacatccgt gccggtatta ataggcaacc actctgcctc taaaaattga
     7801 caggtctcgc ttttcaccgg gtcgatacaa ataatccgtt taccgcttgc ttttaatttg
     7861 gcgagataat caatcccctc cggttcggca gaggtccacg caatgcgaag tgtattcagt
     7921 ggattagacg accaaattac caataattct gtgctttcta caattgtgtg ccaactggtt
     7981 tgttgagcat acacctcaat attgcctaat acataaggca taatcacttg caccgcaccg
     8041 gtggaataat cgcctttagt attggtaaag ccgcctgtga cgtttaaata acgttgcaaa
     8101 agcgtgcgag aggcgtgcag tgaaccactg ctataccagc cgtaagaacc gccgaaaatg
     8161 gattcgctgc catattgctc tcttacccgt tggatttcgc cggaaaccag ctcaaaggct
     8221 ttgtcccaag agattctcac ccacttatct cgccctcgca aagtggtgtc tttattccct
     8281 tccaagtagc ctttccgcac catcggatat ttcacccgaa ccgggctata gagctgatcc
     8341 gccaccacat cttgcaattc gttttggtga tttttcgcta aactgccctc tgatttcacc
     8401 acttttccgt tttccaccgt tacatttaat gcaccccagt gggcggcggt ggtaatggta
     8461 tttttcggtt tatccaaaaa gacaaacttc cctttttcta atgctgtgtt catttaaatt
     8521 aatgcctttt ctgttacaaa attgagagga atttactgga ttaagccaaa agttgcaacc
     8581 acaagcggtt gtttttagcc aaaaatttgc aaaacaaaac ccacctaaaa aggtgggctt
     8641 caaggaagtt aaacggcaac ttgaacgatt acattgtccg cttttttcac ataactattg
     8701 atttggtcaa agttcatata gcggtaaata tcgtccttat ctttctgcaa gttattcata
     8761 tagtctaggt actcttgcgg tgtcggcaat ttacccaata acgcagaaac tgcggctaat
     8821 tctgctgagg ctaaatacac atttgcccct tgccctaaac ggttcgggaa gtttcgggta
     8881 gaggtagaaa ccacattagc attatttgcc actcgggctt ggttacccat acagagagaa
     8941 cagcccggca tctctaccct tgctccgctt ttgccgtaaa tgctgtaata gccctcttcg
     9001 gtcagcaagc ctgcgtccat tttagtcggc ggagcaatcc ataatttagt cggcaattcg
     9061 ccctgtgctt ggcttaacag tttacctgcc gcacggaaat gcccgatatt agtcatacaa
     9121 gaaccaataa agacttcatc aattttatcg ccctgtactt gagaaagcag gcgagcatcg
     9181 tcagggtcat tcggtacgca cacaatcggc tctttgattt catctaagtt gatctcaatc
     9241 actgcggcat actccgcatt ttcgtctgcc tctaaaagct ccggattatc caaccacgct
     9301 tgcatattgg cgatacggcg ttctagcgtg cgtttatcgt catagccttc cgcaatcatc
     9361 cattttaaaa gcgtaatatt agaattcaga tactcgataa tcggctcttt gttgagcttg
     9421 atggtacagg ctgcagcaga gcgttcagca gaagcatcag aaagctcgaa ggcttgttcg
     9481 attttcagat cttccaaccc ttcaatttct aaaattcgac cggagaaaat atttttctta
     9541 ccttttttct ccaccgtcag caagccttgc tgaatggcat aatacggaat agcgtgaacc
     9601 agatcccgta aggtaatgcc cggttgcatt gtgccggaaa aacgcaccaa gaccgattcc
     9661 ggcatatcta acggcatcac ccctgttgcc gcagcaaagg caactaagcc cgaaccggca
     9721 gggaatgaaa tcccgattgg gaaacgggtg tgggaatcgc cgcctgtacc gacagtatcc
     9781 ggcaataaca tacggtttag ccaagagtga atcacgccat cacccgggcg aagtgacaca
     9841 ccgccacggt tcataataaa atcaggcaaa gtgtggtggg taattacgtc caccggtttc
     9901 gggtaagcgg cagtatggca gaacgattgc atcacaagat ctgccgagaa gcctaaacag
     9961 gctaaatctt tcagctcatc tcttgtcatt ggtcctgtgg tatcttgtga accgacagac
    10021 gtcattcgag gctcgcaata ttgccccggt cgaacgcctt ctacgccaca agctcgccct
    10081 accatttttt gagcaagggt gtagcctttg ttactctctg aaaccgactg cggtttaata
    10141 aatacatcac tttcaggcaa gccaagtgct actctggctt tatgggtcaa accacgtccg
    10201 ataatcagcg gaattcgccc gcctgcacgc acttcatcaa gcaatacttc ggtttttagc
    10261 tcaaattcgg ctaagacttc atcggagttg tgtttgcaaa ttttgcctgc ataagggtaa
    10321 atgtcgatta catcgcccat attcaggttg gttacatcca cttcgatcgg taaagaaccg
    10381 gcatcttcta atgtgttaaa gaaaatcggg gcaattttac cgcctaacac caccccaccg
    10441 gcacgtttgt ttggaatgta aggaatatct tcccccataa accaaagcac ggagttggtt
    10501 gcggatttac gagaagagcc ggtgccgact acatcaccga cataggctaa cgggaaacct
    10561 ttttctttta atgcttccag ttgcttaatc gggccggtat gaccgttttc atcggggaaa
    10621 ataccgtcac gttcattttt cagcattgct aatgcgtgaa gtggaatatc agggcgagac
    10681 caagcgtctt gagccgggga aagatcatcg gtattggttt cgcctgtgac tttaaatacc
    10741 gttaccgtta atttttcggc aagtttcggg cgagaggtaa accaatcggc attcgcccaa
    10801 gattccaata cttgttgtgc aaacggatta ccctgatctg cccgttcttt tacatcgtgg
    10861 aaattatcaa acatcaataa tgttttagat aaggcttcta ccgcaatcgg tgcaagctca
    10921 gggttatcca acgcagacaa taaggtttca atgttataac caccttgcat tgtgccgagt
    10981 aatttcactg cgtgagcagg cgaaatgagc ggcgatgtgg caaccccttt ggtaatatcg
    11041 gctaaaaagg cggctttaac ataagcggct tcatcaacac ctgccggaat acgattggta
    11101 aaaagatcca ataaaaagac cgcttgttca gccggtgggt ttttcaataa ttcaaccagt
    11161 tgagccgttt gttccgcaga aagtggctga ggcacaacac ccagtgccgc acgttcatca
    11221 acctgttgtt gataattttc tataaaattt tccatcatca ttccctctcc aactttacat
    11281 attggcaata atgtcttgtg caaattctga ggttgagcgt agagttaccc cctccagcat
    11341 ttccgcaaaa tcaaaggtga cagttttatt ggcaatggtt ttagacaccg cttttaccac
    11401 taaatcagcc gcttcaaccc aacctaaatg gcgtaacatc atttccccac ttaaaattaa
    11461 tgacccagga ttgcctttat tttgccctgc aattttaggg gctgtgccgt gtgtggcttc
    11521 aaaaatagcc gcttcaaacc caatattcgc tcccggtgaa ataccgattc cgcctacttg
    11581 tgcggctaaa gcatcagaaa tatagtcgcc gtttaggttc agtgtagcaa tcacatcata
    11641 ttcggttggg tgtaacaaga tttcttgtaa aaaggcatcg gcaatgctgt cttttataat
    11701 gatttcctca ccggttttcg gattagtcaa gctcatccaa gggcctttat caattaattt
    11761 tgccccaaat tcttccgcaa cttggtagcc ccactcttta aatgctcctt cggtaaattt
    11821 cataatgtta cctttatgca caagcgtgag cgatttacgg ttgttatcaa ttacatattg
    11881 caatgcagca cgcaccaagc gttgtgtgcc ttgcttagaa accggcttaa ttccgatacc
    11941 gcaatcttcg gtaaagcgga tttttttcac gcccatctct tgttgtaaaa attcgatcac
    12001 tttattggct tcaggcgaac cggcaaccca ttctacaccg gcataaatat cttccgagtt
    12061 ttcacggaaa atcaccatat ccaccagctc agggtgttta accgggcttg gcgtaccgtc
    12121 ataataacga attgggcgta agcagttgta taaatctaat ccttgacgca tcgccacatt
    12181 taaagaacga ataccgccac ccaccggtgt cattaaagga cctttaatcg ccacgtgata
    12241 ttggcggata agctctaagg tttcatccgg caaccaagtg ttctcaccat ataatttatt
    12301 cgccttttcg cctgcgtaaa tttccatcca agcaattttt cgcttgcctt gataggcttt
    12361 ttctaccgcc gcatctagca ctgctttcat tgcaggagta acatcaacac cgatgccgtc
    12421 accttcaata aatggaataa tcggattatc cggaacttgt aaagaaccgt cttggttcag
    12481 ttgaatagtt tcgccttgtg gaatttggac ttgtgtttgc attgatttta cccccgtaat
    12541 gacgaaaaag tagtgacgaa aaatgaatgt tgacaatcag ccaacaatgg attaactata
    12601 aacagtaaat ttctaaatgt aaataaagca aaatgggctg agagagaatt tgtgatctaa
    12661 cgcacattta tgtaaataaa atgtaaaaaa tcgttgtgat tcttttggaa atcatctagt
    12721 ttatcttata aatctcaaat aaataggagt aagctatgtc aaaagcaaca ttaacactcg
    12781 aaacaggtga aaaacttgaa ctcaatatgc aaaaaggaac cttagggtat caaacgattg
    12841 atattcagcc tttcttaaag cataagttat ttgcttatga tcccggattg gtttcgaccg
    12901 ctgtatgccg atccaatatc acttatgttg atggcgatga aggggtttta ctctatcgag
    12961 gctacccgat tgaccaatta gccaaacatt ctgattactt agaagtcggt tatatgctgt
    13021 tattcggcga acgccctacc aaagaagaat acaaagactt cgttcaactc atcaaaaaac
    13081 acactcttgt acacgaacaa ctaaccaaat tcttctccgg tttccgccga gattcgcacc
    13141 caatggcggt gatgtgtggg gtaagtggag ctttggctgc cttctaccac gacgccattg
    13201 atgtaaacaa ccaagcccac cgtgaattaa ccgccattcg tttgttagcc aaaatcccaa
    13261 cccttgcggc gatgtgttat aaatactcta tcggtcagcc gtttatgttc ccacaaaacc
    13321 acttatctta cgccggcaac ttcttatata tgatgtttgc cactccttgt gaaccgtacg
    13381 aagtgaaccc tgtgttagag cgtgcgttag accgaatttt cattttacat gcagaccacg
    13441 aacaaaacgc ttcgacctca accgtgcgaa ccgccgcttc atcaggtgca aacccatttg
    13501 cttgcattgc tgccggtatt gcctctctct ggggacctgc acacggagga gcaaatgaag
    13561 cctgtatcaa tatgttgaaa gaaatcggca ctgtggatcg cattcctgaa tttattgctc
    13621 gagccaaaga taaaaatgac ccgttccgct taatgggctt tgggcatcgt gtctataaaa
    13681 actacgaccc tcgtgcgaaa gtaatgcgtg aaacctgcca cgaagtgtta aaagaactga
    13741 acattgataa cccactattt gaagtggcat tggaattaga acgtattgcg ttaagcgacc
    13801 cttatttcat tgagcataaa ctttatccaa acgtagattt ctactccgga atcgtgctaa
    13861 aagccatcgg tattccaacc tcaatgttta ccgtaatgtt tgccctagcc agaaccgttg
    13921 gctggattgc tcactggaaa gagatgtatc tccaaggcaa tatcaaaatc gttcgtccac
    13981 gtcaaatcta caccggacat actaaacgtg attttgagcc aatggataaa tcataagatt
    14041 ggcaaaaaat cgaaaaattt taaccgcttg tttccacaag cggttatatt ttgcataaaa
    14101 tttgcaaatc aggctaattt atttagcagt tgtgttctaa catcttgacc attttcatcg
    14161 ctttttacag ccataataaa taagcctttt ccttgactta atttctccca aagattgcca
    14221 attaaggctt tttctttaga atcttcatta ctttttaatt gttccccttt atattccaca
    14281 attaaaattc gaccatcaat aagctctaca ataaaatcag ggtaaaaatt ctgatgagct
    14341 aatggtaaag aaaaccctct ttttacagga tttcttaacc aatcatcaga aaaactcagt
    14401 tgctgctgat taaaatggta agaaacccgt ttatcttcca catcaatttc aaaactttgg
    14461 ctattttctt gtaatctaaa tccatcaagt ttggctggat aatccaataa attccaactt
    14521 tggtaatcta atagcacttg tgaatcagct aagtcgaatt cgccttgaat attcatacac
    14581 agttgaggta ttactttaaa tatttcccct ttttcggcag gagaagataa tatttcaact
    14641 ctattctggt gaatttgtaa ctgttgctca atttgctctt ttttcttacc tgttgcagtt
    14701 cgaatcaacg ctttttctaa cttttcactt aaattacctt ttacttgcac taaaatgtga
    14761 ccttcttgct cggtaatttt aagttgagaa cgttttgctt cgcttaaatc agacatttca
    14821 gggagttgcg ttaatgctaa aactgttgtc ggtgtataga ataaatctcc ttcgtttcca
    14881 atccaatttt cttgttgtgg gatacgaagc atttcagcta cttctaatgc ttcaaacccc
    14941 attccaatca atttatcttg taaattacga gccgtttcgc cgaacgactt agaggaaagc
    15001 ggagcataag cacgatttaa atcttcaatt tgacggtgtt tagcataagg cattcgcaat
    15061 actcgcccta atagctgctc cgcttccttg ctagaggaaa cattttgtac tgagcaaaaa
    15121 atataagcaa aagggcaatc ccacccttct tttaatgcct caaccgtgat gatgtaattg
    15181 atcttgcatt gtggattaaa taaatcgata ttatctaatt cgtgttgatt acctatcaca
    15241 atggcaatct cttcttcatc aatttttaac tcatcaatta aatactgttt taagacttct
    15301 actgttactt tgccgttttt cggctcagct tgaaacaata aatcggacga acgtactcgc
    15361 tctcatactg tgctttttgt gctaatgctc ctctattgat tacagcccca tctattgctt
    15421 gttgccagtt gtgatgttcg gtcagcacaa taggcaattt gatcatctct tctgctttta
    15481 gatggcttgc cgaaacgtga tacaacacat tacttcctgc ttttctatct gtgtttggcg
    15541 tagcagtaaa ttctaaaata gctgatgggg aaagttgaga tagcacatca aaagagagtg
    15601 aagtccgagc attatgtgct tcatcaacaa tgaccaaagg ctgataagct cgcaacaaat
    15661 ttgcaaaaga acacttaatt ttgcccgttt gtttggaggt taaaccgttc tcttgtagat
    15721 cagtagtgga aatcttttct aaatttgcct gaatatgggg tagtaaacgc tcaaaatgag
    15781 ctgttaattt ttcattaaaa gcatagattt ttcgcccatc ttgattttct acccgaaaat
    15841 tttgaatagt agaaacgatt acaatcgcct tattaccaaa atcttgtggg cgaagtaaat
    15901 caaaatcttc agactcaata accattactt ctcggttaaa agttttatca agtactgcac
    15961 ggtaagggtg ttgcggattt tttaatgctt ctgtagtttg ggttttaatt gtacgagaag
    16021 gcactggcca caaggtaacc gggaaatcgc aatccaaata ctgctttgca atacgagcaa
    16081 tactatgcga ggctaacaac gttttaccgc caccagttgg aattcgtaca caaacataag
    16141 gcacatcacg caaattactg tgttcacttg ggatcttgta actatattca ggttgaattt
    16201 ggctaaatgc ggtttttgca tcagattgca aacaagccga aaaatagtgg ctgacacggt
    16261 ttaatgcctc attttggtaa ttttttaatt tcattttttt ctcctactat taacgagaca
    16321 ttacatcata tggaatctgt ttaaatgtaa ttttcttttc agctaactgc acttctccta
    16381 aacggcacgc ttcgccatat accacaatat ccattccctg ttgaataaat tcagcaaagt
    16441 atggtaactc cgccattaat tttcgtgtca gaacattacc actctgcgga cgtttatcgc
    16501 ctaaaattcc gttatataac aaatagtagg ctttgccgtt gaaagtgccg acaagcggtg
    16561 atttttcgct gtttttttgc aaagggaaat gattttctaa ataccaaata tgggcggcta
    16621 aatcgtcaaa acgaatgttc ggattaagtg aaccgaatgc gtcaaatact tcctcgccta
    16681 actcacaaaa gcgaaacgat ccaccacctt gccaatttac tgcttttgaa ataccgcctt
    16741 gctcaccttc aattactttt ttcaaccgtg ggacaacatg ggttttagca tgttcgccaa
    16801 tctcaatacc gatataacga cggttcattt tatgagcaac tgctgcagtt gtacctgagc
    16861 caagaaagct atcgaggacg agatcatatg gttcagtcga tgcttctaat acaaattaga
    16921 ttaatttttc aggtttagga taatcaaatg aatcttctgc aatatcctcc ccaaataatt
    16981 ctagatgttc actagcagag tcttcatttg ttgccatatc ataatgagct ctgctaatta
    17041 agttatgaat ttttttcttt tccgcacttc gctcaaatac tctc
//
LOCUS       DANLXB010000039        17048 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLXB010000039 DANLXB010000000
VERSION     DANLXB010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17048
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(79..9723)
                     /locus_tag="PXD41_000829"
     CDS             complement(79..9723)
                     /locus_tag="PXD41_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL6288380.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYVLARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKELNWSQKQFNDYVNARPE
                     NFRLENMSENRSHKNEMPGKHDIQRIKSDMEKFLKEGK"
     gene            complement(9775..11550)
                     /locus_tag="PXD41_000830"
     CDS             complement(9775..11550)
                     /locus_tag="PXD41_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL6288381.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQINDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAVKSFHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVRDIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHHRYHQ
                     EVFGAFDKSYLYAGESDTDKLTFSYLLYRDAKRKTSLSGSLWPRQSQNYIDGSEIEVQ
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPNHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDVFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            11705..12790
                     /gene="queA"
                     /locus_tag="PXD41_000831"
     CDS             11705..12790
                     /gene="queA"
                     /locus_tag="PXD41_000831"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL6288382.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(12817..13355)
                     /locus_tag="PXD41_000832"
                     /pseudo
     CDS             complement(12817..13355)
                     /locus_tag="PXD41_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13368..15650)
                     /locus_tag="PXD41_000833"
     CDS             complement(13368..15650)
                     /locus_tag="PXD41_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL6288383.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(15792..17006)
                     /gene="sstT"
                     /locus_tag="PXD41_000834"
     CDS             complement(15792..17006)
                     /gene="sstT"
                     /locus_tag="PXD41_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL6288384.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
BASE COUNT         4377 a         4015 c         3400 g         5256 t
ORIGIN      
        1 ccaatgttac cttcgccatc tgcaatggca actagcattg agggttcatc tttatatttt
       61 tcatataatt cattcatatt atttaccttc ttttaagaat ttttccatat cggatttgat
      121 tcgttgaata tcatgttttc ctggcatctc attcttatgg ctacgatttt cagacatatt
      181 ttctaatctg aaattctccg gtctcgcatt aacataatca ttaaattgtt tttgactcca
      241 atttaattct tttgccgcta atgataatcg gcgatgttcc cagccataca tatgacctat
      301 atcaataggc tgttcaattt cttgacgggt taatttattg cgataattac catttggcaa
      361 tttttcataa ttagcataaa ttttctgtaa cgtttccgag cgtaaataag ctcggttata
      421 tagcccatct accggattat ctgtcgataa atagcgtccc gtttcggcat caatttgctg
      481 agacaaacgg ttaaaatgtg gatctacccc ggcttgatgg tttggcgttt caaaacgatt
      541 gagatctttt tgaactactg tcaccacttt cccgtctttc gggtctgtga actgataagc
      601 tttatagcca tcaatatttt ttacctgttt ggcatcattc ggtaaagcgt gccaacaatc
      661 attatgcacc catacccctt cattatcggc atttgtacct ctaataaagt aagtatgatc
      721 tttctctacc gtcatattgt aggcttttaa tctttcctgt ttgattttta ccttagtgac
      781 agtctgccac tcaccacttt cagcaagtaa gcgatagcct ttttgcaaat gttgagcatc
      841 aacccactga gcttttgcta tctctccgtt gtaagaatgc ccctccgaag aaatcggcac
      901 tctgcccgat aatacttgcg taaagaacgg gtggattttg tttgacacaa tggtgtggta
      961 ttttcctttg ctgtctgcga cttctacata caccgtataa tcgtatggat tactgtaatg
     1021 agcttggact ttctgatagg tggttatacc ggtgcgttca tttttcgcca gcaccttatc
     1081 gcccacttta atgctggaaa tctgtcgata acctttatca gttttgactt ccatatcacc
     1141 gtggaatgag caagtgccta aactagcgct cgatctggtc ttaggaatcg caagttcttt
     1201 acctgatttg gtgactattt tcgccgttgt ccctacacct gttttaacaa gagcaccagc
     1261 accggttaat gctgtcacca catcagtcat catattgcca aactcttttc cggcattaaa
     1321 agaacctaca gcccctgcct gttcatagta aacctgcatt ttatcgagtt tagctaaata
     1381 ctcctgttta gtcatattag caatatagga gagcgtatct tctcttgcga tcaattcttt
     1441 catcgccaca atagtttcta ttgggcttga gaacatggag atcaatcctt caacgctctc
     1501 agcgagattc tcaggaacac cagcaacggc gcctgataca aaactaacat cttgcccaat
     1561 atcaactaat ccccaatata atcgaacttg gttttcacag cgggcatcac catggcagga
     1621 ttttaattct tgtgagcgtt tctgctcctg ccagttcgag aggtagttat tctccactgc
     1681 ccttttccca atatccgccc caaccgctgc cgattgtgta ctatccccta tcaaacctga
     1741 agccagtccg cttgcaagct ggcttagcaa cgccacattc tgtttctcgg cttcggttaa
     1801 gtcttgcgtg gatttgccct tgtagagggt tttaactata aagtccgctg ccgcttcgct
     1861 ccctgcgcct gcagcagccc ctgccagtac attgttccct gtcgcagccg cttccaccgc
     1921 acccagtaag gcgtgggcaa tcaggttggc ttgggtatcc ccttcggtgt actttttgat
     1981 ttctgcattt aagtatggtg aggctaaacc cactgccgct tgtcccacgt ctttcgccgc
     2041 taaaccttgc aaggctgccg tcaccgcttc caccgctcgt ttggttttac tgcccgtgcc
     2101 gtagttttta tcaaactctt tttgcaagcg gtctaaattg gcttctaatt taccaatctc
     2161 ttccttgctc gctttttgag cttgtgcttt gcccaattcc agcttcgctt ccgtcacttt
     2221 ttcacgctca ctatgcgtgt aaatctgata agccttttct gcaatctcgc ctatgccttt
     2281 caccagctct tgtgtttctt tcacctcact gatatcgtat ttcgtcactt tttgattggc
     2341 gttttgcgta tctcggttga gatgattaag cgtagtttcc gcatttaggt cttcggtgag
     2401 ggtgatagcg atattttctc caatcgctgc ctttgttgtg cttcgctcgc tttcgttttt
     2461 attgcccagt aagctcagtg ccgacatcgg gttcacccca cttgtccctc cgctaatcgc
     2521 gacacttcgg gttttcaatt cactgtggtt ttcaatatcg ccggtggtca gcgtgccggc
     2581 ttggaagcgg ttgttttctt tctccgcttg gctagtcatt accgctccct caaaatgggc
     2641 gttctttttc actttaacgt ccattccact cttgcctatg tcgattgcag tttggttttc
     2701 cacctgagca gtgttcaact tcgctccatt atatgccaca tgaccattta ctcctgttgt
     2761 ccctaccgcc aatgtgccat gtacgctgcc ttctgtgtat tcgcttttat atttgcttat
     2821 atcttgtcga cttcttgcct caaaatcttg tacctcacct tcccaatgat ttgctttgac
     2881 attggttgca tccagcatga gtttaccatt tgcagaattt gtaacaattt tacccgcttg
     2941 cagttggttg ttctgccacg tttcagtttc gatattctcc ttgcctttac ctccactcac
     3001 tcctgcctca aaaccaatac caaaactatc tctatctaaa ccgataaata cgcccacact
     3061 cgcactgtga ttcttattct tagtgttgtt ttgataagta tccgcaacac ctttggattc
     3121 aatacccagc ttaccgtcaa gcagcagggt gtctttcact cgggtatcca ccccttccag
     3181 cgcaactttg cccgctcccg aaatcaaggc aatattgccg ccgttcaggg tgcttttgct
     3241 gtgggtcacg ctttgactac ggctttctct ttgctgtttt tgcgtgccga gactgactga
     3301 aatcttcacc gccggatttt ctgccgcagc atggttttct gtgagtgcat tgccaagatt
     3361 gcccagcgtt tctgccactt tctgagcatt ttgtgctgca atcacggcat cctccgccgc
     3421 ttttaccgca tatacccctt tgagtttctc gttttgtgtt gccttcgctt tttgcaccga
     3481 ttgccgtgcc gattgcaccg catccgttac cggtgtactc aacgcaatgc ttaagcccga
     3541 ctggctaaat tcataattat cggtgctgtt aataacatct ttccctgatt caacccgtac
     3601 cccgtttttg cctgaaatca cggcggtttt ttcgttggaa atcagcacat cgacattgct
     3661 cacgctcgct ttattgccgg cttgaatccg aatattgccc ccttcactgc ccaatgtatt
     3721 gcgtgccgtg ctttggattg ccccctctaa gctgttctct tggcgtgttt tttggctacc
     3781 gatagtaaag ccgatttcac caccgttcaa gaaaccgctg cgttttgtct cacgaatatg
     3841 ctgttctgaa agttggtttg ttgccgaact gagcgttaca ttattaccgc cgataatatc
     3901 aatatcgcca ctgcgtgaga cggcaagaag actttcacct tgaatatcgt gaccggcttt
     3961 cactaaaatg tcttcaccgg ttagttcagt gcctttgtgt tcggtttcag aaatattgtc
     4021 ataagtcgtt tttgttttct tcgctagcgc accaccactt tttgttttgt gatactcttc
     4081 ataatcgcga gaacgtgttg cgctacccaa caccatatca ttttcagcca gtaacgctaa
     4141 acgcgctttg gcatccaaat ccgctccttc actgtaaagg tttttccctg aaaccaccac
     4201 atcgcctttg ccttgcaccc gtgaaatgac cacatcattc aaggcttcat tacgatagtg
     4261 attgccaccg cccatttttt catcaaaacc aacctgtaaa gcggtcaaat tcaactgatt
     4321 ttttgcagat aagtaggtct gcccctgtcc gtcattgatg atgtctgcgc ctgctgaggt
     4381 gatgttgcct gcctgtactt gcagcagtcc attttcatct ttaacgtgca gtagggcttt
     4441 gcggtcaagg ttggtttcag cgcgtttgaa accgtctagg tcaatctgtg tggttcgagt
     4501 ggtggaggta tggttaaaat tgcccgcaat atccagcaaa atcgctttat ccgcttcaat
     4561 cttgccgccg atattctcta gatcaccgct cactttggca gcaagcacgc caccactgag
     4621 tgtgccacta ttctctaacc gttcggcatt aaactgtgct aaacggcggc ctgctatcgt
     4681 gccttggttt acaatctctt tactgttgat ggtaagcgca tcggctgaaa tcaggctgcc
     4741 tttgccgtca atatcacctt tgcgtgcaag gacatacact ttcggcacta ataccgatac
     4801 cgtttcaccg cttggcaagc gaaccgtttg ggtttcaaac caaacaatat cgctggtcaa
     4861 gcttgccact tgctccggcg ataaggtaat gcctaaccga agattgaatt tctgcgcaaa
     4921 ggtgatgccg gcatccatca gggctttata ttggctatca aaatccgtat agtcgcccaa
     4981 aaattgtctg ccggttaagc ggttgatttg ctctcgaatt aagcgctgtt cataaaaacc
     5041 atcgcccaaa cgtttatgca cattgttatg gtcgtggcgt agggcattga acatataatc
     5101 actgcttaac cagcgttttt tatcggtgaa atccggatcg gtttcgatca gaacatggct
     5161 atccgcttga gggttaatgc gataaagccc ttggtttggc aaacgggtat cgaccgtcat
     5221 tgagcgaacc tcaaatgcgg ctgcattcgg gcttggtatg cgttcaatcg ccattgttgg
     5281 cggattaggg gcatcgggta gattaccccg ttcaacctga ttgccttccg gcttcacggc
     5341 atttgctgct ttagcgtcca cataatctgt ataagcggtc ggtgaagtat tttccagctc
     5401 gacaaaaata ttcatatcct tatggacttc ttttaaacga gcgagaggac catcattttc
     5461 atcgtagcgg gagtggcgac gtcttgtgcc tccgtggtac tcagtaaaag agaattggcg
     5521 ccttcccagt tcccaatctt ggcgaacagc atctgcatca tcaaggttgg caattctact
     5581 gcgaccaatc gggtttaacg ctttgcctgc aataacccaa cttttatcgt tgataaattc
     5641 atcgctttga taagtgagat cgccacctgc caagatctgt gccggtaagc tggctttggt
     5701 gatattctct tttaccatac gctctttaat ccacaaattc cagaaatgcg ggtattcttg
     5761 gcttaaattc gctttattgt gctttgcaat cgcttcatct aatgcttgaa tattggcacc
     5821 atattttgct tcccaatcaa ttaacggttt taatagcaca taacgctgat aagccgcttc
     5881 tgccgcttca taggctttca gttccgcttg atatgtttgt agtcgttttt ggtattgggc
     5941 ttccgtttcc gtagagcctc taacaggttc aatcggtctt gccggaacca ccggtgcaat
     6001 gccttgccct tgttccttct gtaatttttc ctgctctgcc tcacttaaat gctgattcgc
     6061 taaatcttct tcattcattg cttgaataat ttcaggcgtc atttccggtg catcttcagc
     6121 tggtggtgtt aaattaaacc acgtccatac tgggttatct tttttataat tacctgcagg
     6181 taatagagta caatctacac tttcatcatt cgcacagctt tgagcatagg gttttgccaa
     6241 tacggtcgtg gcattcagct ggctaatatc ggtaattacc ggcaagtttg cttcatcata
     6301 cttttgccaa tagctccacg ttttgcgata gtagcctttg cggagttgat tcacattaat
     6361 tgtcggcaaa tgcccgttat catatacatc acttccacct cgattatgct tatctcttgg
     6421 caaaataaaa tgttcgttca cagtttggcg atcagtggtc tccaattccg aacgataatg
     6481 actatttaca ttcgctacct tatccgcatt caactgaata cgcccttcag cttcaataat
     6541 actgctgcgg ttatgtagct gccctgcgtt gccaataacg gtatcttgct catttaattg
     6601 acgtccaatc gctatctctc ctccgctata tattaatgaa ccgcttttct tattcgcttc
     6661 ataaactagg gtattatttt caattacttt agccgctaaa ccgagagatt gacgagcagc
     6721 aatagtggca gaggtcccgt ctttatcttg atttagtatc ctctccgcac ctaacgccac
     6781 cttatcgcca taaatattcc ctgtgccgat attgtggatt tcttgagctt taatcacagt
     6841 ttgagcgtta tcgttgtccg agcggctatt gattaagcct tcgttataga cggttgaagt
     6901 tgcagtcaaa cgggtatctg ccgagcttat tcgggcattt tgtgcattgg ttatttggtt
     6961 tgccgtgagc tgcaagcggt catttgcggc taattttttg cgattgagaa tatcgccctc
     7021 agtctgaata atcatcgacc tattcgcatt gatatctttg gtaatatcaa agttctcttg
     7081 caaattcagg cgaatatcgc ctgcttgtac atcaccatca ccggataacg ctttggcagt
     7141 gatctccaaa ccattatttg cagaaacttt tccctcggta ttcgtcattg tgagtgattt
     7201 tccgccgaaa atagccagat cgccccaact taaaatttcc ccattacggt tatttaagct
     7261 gtcgctgagg gtaaatcgtg ctgatgagcc gatataaata ccgccttttt cattattgag
     7321 ctgttttgtg ctgttcagta caaactgcga tgcaataatc ccctgtattg gctgaggttg
     7381 gcgtgccaag gtaccttgat tttccacctc gaaactgttc atcgtaagtg agccacctgc
     7441 ttcaataagt gagccatttt ccgagatccg attatttaag acagtcggta cattgagcgt
     7501 gatatctgtg gccgatttca gtaccccacc ttggttatcc aaaagcgtgc tatttagggt
     7561 gagatttccc acactttgaa taacaccgtg ccgattatct acttgttggg aaaccgtgag
     7621 cgctaactct tttactgaac taatttctcc ctgctcacgg ttatctaagg attgagcgtt
     7681 aatcgcaaca ccgctggcgg aaattcgccc gccttgattt tgcagttcgc tagttatatc
     7741 aagggtttgc tccgtttgag aggtgatcac ccccgattga ttttttaacg tattgaccgt
     7801 aatcgcctgt ttttcgccac tcaaaatcag accttgctga ttattcagca atggagcacg
     7861 aatagataac tcgccttttg caaccaattt gccatcgact gaatccacag catcatttaa
     7921 atttagccct aaacgcttgc cactacttaa tagcccttgg ttatttgtta aacgattacc
     7981 gtcaatctca aaatgtccac ccactgaaaa gcgagccgag tcagtatgga tactctctgc
     8041 ttttaggcga aaatcctgct caccagtctg cttccaaacc gagccacgag catttaaatt
     8101 cgcttgttgg gcctcaatca cctctgcggt tagctggctt ccttcagtgg aaagccattt
     8161 tggggtggtg agcttgatct gatttgcact aaactgcgca ctattcgcct gaatatcgcc
     8221 cgattttgca ctgtattcaa cggtatgggc attattttgg ctctgattgg catcaatctc
     8281 agctgccgcc acgttaattt tccccgaagc gatatttttt ccctgcacag tggttttttc
     8341 tggggcagtg agttgaatag ttttccctgc cacagattga gcttccagct tccgtacttc
     8401 accttgtgca gtgtcggtta cgtccacccc agcggcaatc agtgagtttt tgtcggcgtg
     8461 aatttggcgg gcggtgtagg tgatattgcc ttttgcgacc gtttcgccac tttgctggat
     8521 tttagtttcg gcttttttct gaatattgcc acccctcgcc acgatggaac cgctattttg
     8581 aatatcggct ttcgagttaa gctgaatatt gccctgttta ttttcaattt tgccttggtt
     8641 gtcaatcccg tgttgggcat tgagttgcac ttgtctttga gcgttgaacg tgccgctgtt
     8701 tacaatccgc ccttgactgt caatggtgag cgtatcggca cttgcaccga tatgcccagc
     8761 gttacgcacg cccacgccct gttccgtacc aatcaggtgg attttgccgg catacattcc
     8821 gcccagctca cccacatcaa tcgcaactgt gggcttttct tcccctgcaa gcggttgatt
     8881 tgtatgaata atttgcaaat tgttgtccga atttgaccgc ttgacggtgt ttttgccggt
     8941 aatgacttta gtctcttttt tcgaccagac accggcgttg attttcgctt ctcgggcgag
     9001 gatatcggtg taatccactc ggctgttgtc cagccctttg ccagcaaccg ttaccttgcc
     9061 tttttccact acaaaacctt ctaaattgcc ttgatttatc tgtggttttc cggtggtcag
     9121 cgtggctcgg tcggcgttga taataccgca gccgtcacag tgcaagccgc tcgggttggc
     9181 gataatcact tccgcttttt tgccagccac ttccacataa cctttcatta ccgaaggctt
     9241 actggaattg acttcattta aaatcacctt cgcttcgcca cgggcaagat acgggttgcc
     9301 ttgcaccata ccggcttgtt gggtggcggt gttggtgcgg ctgttgttga gaattgcccc
     9361 cttctccgct acgtcaaatt ggctgtattt attgtgggaa agccctttat cgttcggggt
     9421 ttgaatattg atttgtggca gcccgttggc ggtttgcaaa ataatcggtt gctgattttt
     9481 cggggcagtg ctatcggctt gaataatcaa agtttccgcc atagcgttgt ctgataaggt
     9541 aacgaatccc aacgcacaga acaagctgaa cgcaagcggt cgaattttgc aaattttttg
     9601 taaaattgca ccgcttgtca tactttcact ttctgattta cctgctaatt ttgctaattc
     9661 agataccacc acaatacgtt gtaaggtctt gctgaaaata gtgcgaaaac aatgcttatt
     9721 cataataatt ccttaatagc acaatatact taatacaata tgcccaatca ttcattaaaa
     9781 attgtaacca atattaaaac cggcaacggt gtctgaggtt ttaaaccctt ccggttttcg
     9841 catcggtcta ccggcaaaca cgtcataact aaatccttta actccacccc gaaacccaat
     9901 ggctgttccc attaaatgat gtccgagctg attttccgtt gcccaaccgg acactcgacc
     9961 accatctacc gcccaataaa aagcgtggtt cggattaaat tgccagctca actcattacg
    10021 ccagttccag ccccgctcac cggaaagagt cagttcaccg tcaaatccac gtatggtgta
    10081 acgcccgcca atcgaaaaac ggtcttgcgg aaccagaggg gttttattcc attgggcatt
    10141 taggctactt tgccactgcc atggctgctt gccccaaaaa aacggtttcg tcaggcttgc
    10201 acttgccgtg atgattttag ggcgagaagt cccttcgcca taatcttcct cgggagcaga
    10261 taatgcccct cgtgctgccg tacctcgttt gaaattagcc gaaagctcaa gcgtagcggt
    10321 cgggaaatat tctttatgcg aaaaacccgc ttcccaacct gccattcggc gtttttgtac
    10381 ttcaatttct gagccgtcaa tatagttttg cgactggcgt ggccaaagtg aaccggacaa
    10441 gctcgtttta cgtttggcat cacgataaag caaataagaa aaggttaatt tatcggtatc
    10501 actttcaccg gcgtagagat agctcttgtc aaaggcacca aatacttctt gatgataacg
    10561 atgatgagtg tgtgaaaatg ctaactgcca atagccaaac ggcacggaat agtaaagcgt
    10621 gagattttta ctggcacgtc tgccgttatc atcacctttt tgtttcatcg aatgggtaaa
    10681 agaggtatag aacaggtcat ttgccgaaaa aatattatct atagacagag tggcggaggt
    10741 ttgtaatttg cctgtggatt tcgagccggc atcgtccagc ccaagattta agcgaaatgg
    10801 aaacgcttgc gaatagctga tttttaaatc actgtctccc acctccgctt tttcgcttga
    10861 gctgggtaaa atctcaatat ttgcctccgc cgtcggcacc cgttttagat tttccagaga
    10921 ctgctcaata tctcgcacat tcagaatatc gccttcggca aaagtaaaac cggttaaggc
    10981 gtgcagcttg gtaaaacgcg gtactttgcc gctatctacc actaaagtat tgcgtatttt
    11041 gcccggaatc acggttaaaa ctaattttcc gccacgtaaa tcttgctccg cagtaaccac
    11101 tcgtgtagtg acataacctt tgccaataat ttcattttgg atttgcttca tcaacacagc
    11161 taacccttca ccaccaaagc agtgaggtaa tgtcaaatga aatgatttta ctgctttttc
    11221 aaacgcccat tggaattggc tggtagtcag agaattgtca ggagaatagt caatgagagt
    11281 gatttgatga atggggtaac aaggcaattc gtgattggaa agagtaagtg tatcattgat
    11341 ttgtgtctcg agccgtacat cagctttcgg ctggaatttt tctgcttgat tttgttggta
    11401 ttgctgttgg cgatgttgct gggcagcatc aatttgttgt tgagttgcat caatgcgtgc
    11461 ttgttgtaca aggcttgaag aatttgcttc agcaacaaaa gaagcactta acaataccgt
    11521 gcttaaaatc agattttgtg gggttttcat aagatcaaat aagtaagaca ttcaacgttt
    11581 ttagtctata aaaatttatg ttgttttgca aactccgttt tatggagctt tatacatatc
    11641 tgacgacttt ggttttttat gctattatct ccgccatttt tatactatag agaatagaat
    11701 aaccgtgtta gtttcagatt ttcatttcaa cttacccgat gagctgattg ctcgctaccc
    11761 gactgccgaa cgctctgcca gccgtttatt acacttaaat ggcgaaacag gcgaatttgc
    11821 cgatcaacaa tttgtggatt tatacgatca tatcaacgaa ggcgatctat tgatcttcaa
    11881 taacactcga gtgatcccgg ctcgccttta cggtcgaaaa cctagtggcg gcaaagtaga
    11941 ggcattagtg gaacgggtgc tagatgaaca ccgctgcttg gctcacgtta aagcctcaaa
    12001 agcaccgaaa gaaggggctg aattgatctt tggggaagat aagctaggtg aaggcaaagg
    12061 ctttacggcg acaatggtag ctcgccacga tactctgttt gaattggtgt ttaacgaaga
    12121 gcaaccgtta ttcgaattgc tacagcaagc tggtcatatg cctcttccac cttatatcga
    12181 ccgccccgat gaagatgctg accaagagcg ttatcaaacc gtttatagca aagtgttagg
    12241 tgcagttgcc gcccctaccg ccggtttgca ttttgacaat gcaatgcttg aaaaactaaa
    12301 agcaaaaggg gtggatactg ccttcgtaac attgcacgtt ggtgccggca ctttccagcc
    12361 ggtacgggta gaaaccattg aagatcataa aatgcacgcc gaatatgccg aagtgagcca
    12421 agaagtagtc gataaaattc tcgcaacgaa agccaaagga aaaagagtga ttgcaattgg
    12481 tacgacatca gtacgttcgg ttgaaagtgc cgcccaagcg gctgaaaaag atgggaaatt
    12541 gattgctccg ttcttttctg acaccgctat tttcctttac ccgggaaaaa cctttaaagt
    12601 cattgatgcg ttagtcacca atttccattt accggaatcc acgctaatta tgttagtctc
    12661 agcatttgcc ggctatagaa atacgatgaa tgcctacgcc cacgcagtag aaactaaata
    12721 ccgttttttc agctatggcg atgcgatgtt tatcaataaa aacccaaatg cgttgagtga
    12781 tgttccttaa tttatgaggg ttataaggga ataacattat gaacaaaaac aatcttccaa
    12841 ccattttaag ggattgtttt caatatattc aataatttgg aagtacgatg tttcattacg
    12901 aataatgtgt tcataataat tcctttgcca aatttcagaa atatcggtat tttgacgaac
    12961 ccatttagtt acgccaattt taaaaccacg cacaatagag ccgattgttc gtgatgttcc
    13021 ccgtaagggc gaaacatttt tcgcccttat acatggggca aatgatgatt tgcccctaca
    13081 gtttcgacga tttcaataat gccatgtaaa tgattaggca taatcacaaa gctatgcaag
    13141 cttacatttg gaaaatgatc gggtatatct tcccaacatt gacgtacaat attccctatc
    13201 ttattaagcc tcatttcatc atcaacaatc tcaccgagaa aatggtgttt atttttacaa
    13261 caaatagtaa tgaaatagaa tccttgtgat cggtaatcat aatgctttag acgaattgaa
    13321 cgcctcctat gaatctccgg ctgatatttc tgcatttttc ttattcctta ataaaactgc
    13381 ttataccaag gggaaaatgc cccccttgcc tgctcaattt caatagaact tgggtaaaat
    13441 tttactctta tcattcccgt ttctacggta tttaatacat taatatgtct tctgtttaat
    13501 ctctcaataa tctgtttatt cggtaatttc catgggttcc atcttccagc agaaatcact
    13561 gcaaatgctg gctgggtaat cgataataaa gtttcgccag tgctgctttt gctaccgtga
    13621 tgtccaacct gtagaaaatc aattttgccg agctgatggg caaattggcg ttcttgttcc
    13681 acgccagaat cccctgtcag taatatcttc aagcggtcgt ttttggctaa aataacgcaa
    13741 gagtcttggt ttttagctcg ttctgcaatg tgtgacgggt aaattgccaa taattgccat
    13801 tcgccaaatt gccacgatgt tccggcaata caaggctcgg gatttatatt gtgatacgtc
    13861 accttgcttg aactaattaa ccttgctttt gggtatgctt gcaataactc cactacccca
    13921 cctgaatgat cattatcatc gtgacttaga aaaatcgcct ctacctcaat gccatttcgc
    13981 tttaaatacg gcaagatttc catttttgcc attgaattgc gactaccatc atttgcttgc
    14041 caactggagc cggtatcgta aattaccgct ttattttgtt gataaatgaa cgccattgcc
    14101 agcccttgcc caacatcaaa cataatccat tctgtttggg tttgattaaa gagcttaggg
    14161 agataaaaac tcagattgaa caatagggat accgctactg cacttaacca ctttttataa
    14221 gatagccgat ataatttgca atacagcaat actaaaacca ataaattcag tgaaagtaac
    14281 tgccactgtt gccaatggct taatgcaaac cacgcattag aaaatggatc taacagccat
    14341 aggctaaatt gagcaagata gtccgccaac agccacgttg aaaacagatt gtcggtcaag
    14401 agcgtaaata aaataagcgg tacaagcaaa aagctataca acggcacaat aatcaggttg
    14461 gcaagcagtg caaaagcaga gatgccctca aaaaagtaga gttgaaccgg tgagaaaatc
    14521 agccaaatgc cgatttgtaa gtgcaaaagc gataaccaca agcggttaaa ttttgtgatt
    14581 tttttacgat attcatcgtt taaaaatcgg ctaagaggaa aatattgata ccataaaatt
    14641 aaacttgcta ccgctaaaat tgagagccaa aaactatcag aaagcaggct caatgggtca
    14701 attaaaatca gtaacgccac tattctcccc caatattgcc aaggggtata gtgtcgccgc
    14761 agaacttggc aaagcaagac aaacgcaatc gccagcaacg ctctggcggt cggcacggca
    14821 aaaccggcta aatagctgta accaaatgcg gtgatgaagc taactattct tgcaaaataa
    14881 agtgaaaatc cgaccgcttg taatgcggta agctcgcttt tcaagcaaag ccattgcacg
    14941 cctttggcaa agtaaacacc aaacaacatt gccagcccga tatgcaagcc tgaaatggca
    15001 attagatggg cagtagcggt ttgttggaat tgcccccagt gttctgtttt cagccacgcc
    15061 ctttcaccaa aagccagagc caataaaaag ccttgcgtag gcaaagcgtc cgtttcagct
    15121 ttcactttat tcagccaatt tgttcgcaag ctataatcag ttttggctaa tgtttccacc
    15181 ttgcgaaccg ttgctgtcat attgatatga ttggcaaaat accaacgctg tcggtcaaaa
    15241 ttaccgatat tgctacgagc tgaaatagga cgaagagcca gttcggcttg atagaattga
    15301 ttaagtaaca acggctgttt cgattgccag ttcaagtaga tcttctcgcc tgtatttagt
    15361 gtcgcaatcg ctgtttgata atcggtttgt tttaagattt tactgatttc aaattgaaca
    15421 ggcgttttac tagcagtcgt tttttccgca ttttttgcaa cttgaatgat ctgaatatag
    15481 ccaatacaaa ccaataagcc gagtacagcc gttaattttg agcgtagata aacactcaat
    15541 atcagcacta aggttcctat tactataccc acaaatagaa acgctttagg caaccataaa
    15601 ataggcagat gaaatagaat cagggcaata caaaaacggt ctaaagtcat aattcggctt
    15661 actttttaaa gctgagtatg ccgtttgtgc ttaatatttt cagaataaat tttcagattt
    15721 tcgacacagt tcgcaaaaat acttgaaaaa ataaaggcag actttttagc ctgccttata
    15781 aagaagagat attatgctga tttttgatct tcagcgtaac ttactgctgc agtgaataat
    15841 acgtctgttg atgaatttaa tgcggtttca accgagtctt gaatcacacc aatcacaaaa
    15901 cccaccccaa ttacttgagc agcaatatcg tttggaatat taaataaact acaggctaat
    15961 ggaatcaata ataatgaacc gcctgccaca cctgatgcgc cacaagcaca gattgatgca
    16021 actacgctta atagtagtgc tgttgcgaaa tcaggttgaa taccttgtgt ataagctgcc
    16081 gctagggtta atacggttac agtaatcgct gcacctgcca tattaatact tgcacctaat
    16141 ggaatagcta cagaagcgat ctcatcacga acgcccaaac gcttggctaa attcatattc
    16201 accggaatgt tggctgctga actgcgggta aagaatgccg ttacaccact ctctcgtaaa
    16261 caggtaaatg taagtgggta tgggttgcgg cgaattttcc aatacactaa taatggattt
    16321 agtactaatg ccacaaataa cattgcgcca actaagacta ctaataaacg tgcgtaatct
    16381 tcaaacgcat caataccatt gatggcaaca gtttcagcta ctaaaccaaa taccccaata
    16441 ggcgcaaatg caatcacaac tttcacaaca aacgaaactg cgttagctaa atcatttaag
    16501 aatgcttttg aacttgccga accatggcgg aatgcaatcc ctaaaccgat agaccacgca
    16561 agaataccga taaagtttgc attacttaat gcgactaatg gattatcaac taagttaaaa
    16621 ataacggttt ttagaatttc accaatgcct tgtggcgggg ttaaaccgtc tgggcttgca
    16681 gtaagctcta atgtagttgg gaacataaag cttaaaacaa cagccgttaa tgccgcaaaa
    16741 aatgtaccta atacataaag caccagaatc ggctttaatt tgctatctga accaacttct
    16801 ttatttgcaa tcgcagccaa aactaataca aatactaaaa taggcgcaat ggcacgtagt
    16861 gatttcacaa aaaattgacc taatacacca acgctggtag cccattcttt attaataaat
    16921 gccagcaata cccctagcac taaaccaatg gcgatacgta atactaaatt accgccaaga
    16981 atttttgatg ataatgattg actcataacc cttcacttct gtaagacaac aaaaaataag
    17041 gataaata
//
LOCUS       DANLXB010000040        16979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLXB010000040 DANLXB010000000
VERSION     DANLXB010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            194..3058
                     /locus_tag="PXD41_000835"
     CDS             194..3058
                     /locus_tag="PXD41_000835"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL6288385.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(3129..3722)
                     /locus_tag="PXD41_000836"
     CDS             complement(3129..3722)
                     /locus_tag="PXD41_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6288386.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(3857..5311)
                     /gene="gnd"
                     /locus_tag="PXD41_000837"
     CDS             complement(3857..5311)
                     /gene="gnd"
                     /locus_tag="PXD41_000837"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL6288387.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            complement(5394..6083)
                     /locus_tag="PXD41_000838"
     CDS             complement(5394..6083)
                     /locus_tag="PXD41_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL6288388.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            complement(6093..6980)
                     /locus_tag="PXD41_000839"
     CDS             complement(6093..6980)
                     /locus_tag="PXD41_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL6288389.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            complement(7156..7854)
                     /gene="pgl"
                     /locus_tag="PXD41_000840"
     CDS             complement(7156..7854)
                     /gene="pgl"
                     /locus_tag="PXD41_000840"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL6288390.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            complement(7994..9481)
                     /locus_tag="PXD41_000841"
     CDS             complement(7994..9481)
                     /locus_tag="PXD41_000841"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL6288391.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            complement(9556..10374)
                     /gene="cysQ"
                     /locus_tag="PXD41_000842"
     CDS             complement(9556..10374)
                     /gene="cysQ"
                     /locus_tag="PXD41_000842"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL6288392.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            complement(10388..10930)
                     /gene="nudE"
                     /locus_tag="PXD41_000843"
     CDS             complement(10388..10930)
                     /gene="nudE"
                     /locus_tag="PXD41_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL6288393.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            11018..11434
                     /gene="hslR"
                     /locus_tag="PXD41_000844"
     CDS             11018..11434
                     /gene="hslR"
                     /locus_tag="PXD41_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL6288394.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            11678..12571
                     /gene="hslO"
                     /locus_tag="PXD41_000845"
     CDS             11678..12571
                     /gene="hslO"
                     /locus_tag="PXD41_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL6288395.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(12645..13283)
                     /locus_tag="PXD41_000846"
     CDS             complement(12645..13283)
                     /locus_tag="PXD41_000846"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL6288396.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(13311..13697)
                     /locus_tag="PXD41_000847"
     CDS             complement(13311..13697)
                     /locus_tag="PXD41_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6288397.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            complement(13694..14467)
                     /gene="hisF"
                     /locus_tag="PXD41_000848"
     CDS             complement(13694..14467)
                     /gene="hisF"
                     /locus_tag="PXD41_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL6288398.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            complement(14449..15198)
                     /gene="hisA"
                     /locus_tag="PXD41_000849"
     CDS             complement(14449..15198)
                     /gene="hisA"
                     /locus_tag="PXD41_000849"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL6288399.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            complement(15368..16213)
                     /locus_tag="PXD41_000850"
     CDS             complement(15368..16213)
                     /locus_tag="PXD41_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL6288400.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            complement(16312..16905)
                     /gene="hisH"
                     /locus_tag="PXD41_000851"
     CDS             complement(16312..16905)
                     /gene="hisH"
                     /locus_tag="PXD41_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL6288401.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
BASE COUNT         4681 a         3949 c         3541 g         4808 t
ORIGIN      
        1 aaagctgttt aaatagccga aagcaattat gggaaaaacg aagaaaaatg caagaggaac
       61 aaaaaattcc caattaatct tttagttgac cttaatttaa ataactaatt acctataaaa
      121 gcatttacgg caaagatctt ttttataaga ttaagctagt gaaaaaatta ttaaacaaga
      181 gaaaacaaaa ccaatgacaa aacaattcac aatggaagac cgttttaacc cttccgctgt
      241 agagcaagcg ctctaccaac actgggaatc gcaaggctat tttaagccga gtgaagatat
      301 taatgcaccg agctactgta tcgctattcc gccgccgaat gtgacgggga gtttgcatat
      361 ggggcacgct ttccagcaaa ccttgatgga tacgctgatt cgttttaacc gtatggaggg
      421 caacaatacc ctttggcaaa caggaactga ccacgcaggg attgccactc agatggtggt
      481 ggagcgtaaa atcgcagcgg aagaaggtaa aacccgccac gattatgggc gtgaagcctt
      541 tatcaacaaa atctgggatt ggaaagccta ttcgggcggc acgatcagcc agcaaatgcg
      601 tcgcttaggc aactcgattg actgggatcg tgagcgtttt acgatggacg aaggcttatc
      661 caatgcggta aaagaggtgt tcgttcgctt gcacgaagaa ggcttgattt accgtggcaa
      721 acgcctcgta aactgggatc cgaaactgca tactgcgatt tctgacttgg aagtggaaaa
      781 caaagaaagc aaaggctcgc tgtggcattt ccgctatccg ctggctaatg gtgcaaaaac
      841 cgcagacggc ttggattact tagtggtggc aacgacccgt cctgaaacga tgttgggcga
      901 tactgcggtg gcggttcacc ctgaagatga gcgttatcaa gctctgattg gcaaaagcgt
      961 aatcctaccg cttgccaacc gtgaaatccc gattattgcc gatgagtatg tggatcgtga
     1021 gttcggtacg ggcgtggtaa aaatcacccc tgcccacgat ttcaacgact acgaagtggg
     1081 caaacgccac ggcttgccga tggtgaatgt gatgacctta aatgccgata ttcgtgcaga
     1141 ggccgaaatt atcggcacag acggtaaacc gctttccgac tacaccgccc caattcctgc
     1201 cgactatcaa ggcttagagc gttttgccgc gcgtaagaaa attgtggcag attttgaagc
     1261 tcttgggctg ttagatcaaa tcaaaccaca cgacttaaaa gtgccgtatg gcgaccgtgg
     1321 tggcgtgccg attgagccga tgctgaccga ccaatggtat gtgtctgtca aacctttggc
     1381 ggaagtcgcg accaaagcgg tggaagacgg cgaaatccaa ttcgtgccga aacagtacga
     1441 aaacctgtat ttctcttgga tgcgtgatat tcaagactgg tgtatctctc gccaattatg
     1501 gtggggacac cgcattccag cgtggtatga cgagcagggc aatgtttatg tagcacgaga
     1561 tgaagcggaa gtgcgtgcga aacacaactt acctgcggac ttaccattaa agcaagatga
     1621 agacgtactg gatacttggt tctcgtctgg tctatggacg ttctcaacgt taggctggcc
     1681 agaacaaacc aaagaactga aaatgttcca cccgaccgat gtgctgatta ccggttttga
     1741 catcatcttc ttctgggtgg ctcgtatgat tatgttcacg atgcacttca tcaaagatga
     1801 aaacggcaaa ccgcaagtgc cgttcaaaac cgtgtatgta acaggcttga tccgtgacga
     1861 gcaagggcag aaaatgtcga aatcgaaagg gaacgtgtta gacccgattg atatgattga
     1921 cggcatcagt ctcgacgatt tgctcgaaaa acgtacaggt aatatgatgc agccacaact
     1981 ggcagaaaaa atcgctaagg caacccgcaa agaatttgcc gaagggattg tggcacacgg
     2041 cacagacgct ctgcgtttca ccctcaccgc ccttgccagc aacggtcgag acatcaactg
     2101 ggatatgaaa cgtttagaag gctaccgcaa cttctgcaac aaactgtgga atgcgagccg
     2161 ttatgtgctg accaatgaca agttggattt aagcgaaggc gacgtggaat ttagccttgc
     2221 cgatcgttgg attgaaagcc aattcaaccg cacggtggaa actttccgca ccgcactcag
     2281 ccaataccgt ttcgacttag tggcaaatgc gatctacgaa tttacttggg atcaattctg
     2341 cgactggtat ttagagctga ccaaacctat tttcttcaaa ggcacagatg tacaacgccg
     2401 tggcgcaagt cgcacgctgg tgaatgtatt ggaaaaactc ctgcgtttaa tccacccagt
     2461 aatgccgttc atcaccgaag aaatctggca gaaagtgaaa ggctttgtag gtattgaagc
     2521 cgataccatt atgttgcaaa aattcccaca atttgacccg cttgccattg atgaaaccgc
     2581 cgaaagtcaa atcaacttta tcaaagaagt gattgtggcg gtgcgtaaca ttcgtgcgga
     2641 aagcaacatc gcaccaagca aaggtttaga tttaatcgct cgtaatttct ctgcggacga
     2701 agtctctatt ctcaacgcta acgaagtgtt gctcaaatcg atggcaaaac ttgatagcgt
     2761 gaaagtgctg gaaaatggtg aaaatgcacc gctatcggta gcgaaactgg tcgcaaatgg
     2821 tgagatcttg atcccaatgg caggctttat caacaaagaa gctgagctag ctcgcctcac
     2881 caaagagatg gataaactta aaggtgaagt ggctcgcatt gaaggcaaac tttcaaacga
     2941 agcctttgtc gccaaagccc cagagcaagt catcgccaaa gagcgtgaaa aaatgcaaga
     3001 gtacctgagt ggattagaga aattgcaggt gcagtatcaa gagattgaag cactgtaatt
     3061 aactaacaag cggtcaggat ttggaaattt tttgctaatt cagaccgctt gcttattgaa
     3121 gcttttcatt ataaatgttt ggttaaaatc gcctctaggc ggtcatagcc tgcttgggtg
     3181 aagtgtaatc catcgtggca taaagttaga tctaaattcc cttctttgtc agcaaaatat
     3241 tcccacgttt ttacataagt caaatcagat ggaatatttg cctcaaaata cgcattgagc
     3301 tcttttattg cagcattatt ggtggtggta atattattaa ccggtgtggc ttccaataga
     3361 aaaaagttgg catttggatt aattttgcga agagaatcca caatttcgcc aatccactct
     3421 aacacttgtt ttggcgagta atccggctct tttacaatgt cattaacgcc tagaaaaata
     3481 aatacattat cgccaacgtg ttgaattcgc tcttgtcggg taatcacatc caaatattgg
     3541 cgggtgctgg tgcctgataa gcccaaattg gcaactgttt ttcctgctaa attcggcgtg
     3601 ccgttttcca tatcgcccca catatcaaac agggaatgcc caataaggga aatatctgcc
     3661 tgtttttcaa attctgattt ttttgtttgg tagcgattaa aaatatcttg atcggtaagc
     3721 ataggttctc cttaaatata aatgaaaaat cgctccatta ttatacaaac ttgtaaacat
     3781 tcactccaag atattttgaa gaaaaatcca ataaaaaagc cacttaatat cgaattaagt
     3841 ggctcaaaaa gattaattac acatcataag tggtcgatgc ggtattaccg ccacgtcctg
     3901 tccagttggt gtggaagaac tcaccgcgag ctttgtctgt acgctcataa gtatgagcac
     3961 caaagtagtc acgttgtgct tggagtaagt ttgccggtaa acgtgccgag gtgtagccat
     4021 ctaagaaggt aatggctgac gccatacaag gtacaggtaa accgatttcc accgattttg
     4081 ccactacttt acgccaatct gccaagcagt tttccaaaat atctttgaag tatgggtctg
     4141 agcctaagaa cactaaatat gggttggctt catacgcatc acgaatgttg cctaagaaac
     4201 ggctgcggat aatacaacct tcacgccata atagggcggt attgccgtag ttgatgtccc
     4261 aaccgaattg ctcagaagcc tcacgaatca acataaagcc ttgtgcataa gagatgattt
     4321 tggaagcaag taacgcacgg cgtaccgctt ctacccatac ttttttgtcg ccttcaactt
     4381 taccaatttc tttgttaaac aatcttgaag ccgcaacacg ttgatcttta aacgcagata
     4441 cgcaacgggc gaataccgac tcggtaatca gtgttaatgg aatgccgaaa tcaagggcgt
     4501 taataccagt ccatttaccc gttccttttt gacctgcggt gtcgagaatt ttctctacca
     4561 atggctcgcc gtcttcgtct ttgtaggcaa gaatatcagt ggtaatatcc accaaatagc
     4621 tgtctaattc ggtgtttttc cactctttaa agatttcgtg catttcatca tagcttaaac
     4681 ctaaaccatc ttttaagaat tggtaggctt cacaaattaa ctgcatatcg ccatattcga
     4741 taccgttgtg aaccattttc acaaaatgcc ctgctccgtc acgaccaacc cagtcacaac
     4801 aaggctcacc tttgtcggtt ttggctgaaa ttgcttggaa aatcggcttc acatattgcc
     4861 acgcagattc atcaccgccc ggcataattg acggcccgtg acgagcaccc tcttcgccgc
     4921 ccgatacacc tgagccgata aagcgaatgc ctttttccgc taacgctttc acacggcggt
     4981 tggtgtccgg atagtttgag ttaccgccat caatgatgat gtcgccttct tctaaatgtg
     5041 gcagaagagc ctcgataaac tgatccacca cctcaccggc acgcaccatt agcatcactt
     5101 tacgcggttt ttccaacttc gccgctaaat cttctaacga gtaagcaccg ataatgttcg
     5161 tgcctttcgc cgcaccttct aagaactcat ccacttttga agtagtgcgg ttgtacgcca
     5221 ccactttaaa gccgttgtca ttcatattca aaattaaatt ttgacccatt acggcgagtc
     5281 caatcacgcc gatatcgcct ttttgtgaca ttgtttgctc ctattgtttt tgattctatg
     5341 caagcggtcg aattggtaaa attttttgca aatttgaccg cttgtaacat ttattaacct
     5401 aaaataaact ccaccgccat ttggctgtgt aatgctgctg tatcgaaaaa cggtaacgga
     5461 ttgtcgtttt ggttaatcag caacccgatt tcggtacaac ctaaaatcac accttctgca
     5521 ccttgttcac taagttgttg aatagtctga agataaaacg ctttggcact ttcagtaatc
     5581 ttgcctaaac agagttcctc gaaaataatg cgatgaattt cttgttgcgt ttcctcatct
     5641 ggtactattg atgtgatacc acgctccaat aaaccgtctt tgtaaaaatt atcactcata
     5701 gtaaattttg tgccaaggag tgctactttc tgcagacctt gagctgaaat cgcctcagcc
     5761 acacagtcca aaatatgcaa aaacggcaca gagatatggc tactaatttg atcggcaatt
     5821 ttgtgcattg tgttggttgc caataaaatg ccttctgctc cggcttgttc tagcaatcta
     5881 gcttgttcag ataaaatttc agcggctgct tgccaatttc cctgcttttg gcattgtaca
     5941 atctcttcaa aattgacact cgaaattaaa atcttggcac tgctatttcc acctaatact
     6001 ttattcaccg agcgattaat atctaaataa taagaaaccg tgctttccgc actcattcca
     6061 cctaaaatgc cgagtgtttt cattaatata ccttattgat tttccgctaa cttttctaaa
     6121 atgcggctca ttgataaatc cattttagaa aaagcgaacc atttcttacc taaatcttta
     6181 agtgatgcac cgatatgata aagctctttt tcatcaataa tcaaaaatcg ctcgtgagat
     6241 ttatcaaata ttttcacatt aatgtgagca tattggctgt tatatttttc caaatctaat
     6301 gcaagttgct tagatatttg tttcgtataa atcgtaactg atacgttatg cgatcgtttc
     6361 gtaaataaag ttaaaacggt atcatctaca tagttatcaa ttaaaatcag cgatgatttt
     6421 gcacctctca ctaattccgt aacaaactga taagcgttaa aggtttcacc ttcaaagaaa
     6481 accccttgca ttttaggctt attgccttca agagattgaa acacctgctc taactgccca
     6541 gacatctcca actgtttacg ctctacactt tctaagcgtt gtaccaaacc actatttgtt
     6601 tgcaaaagat gacgcatttg cacaaaggct tgcataatct taatgctaac ttgcaccgca
     6661 acttcactac gcaatactgc cgaaagcatt gcaatgcctt gctcggtaaa gacataagga
     6721 agatatttcc tatgttggcc acgcccacta ttttcgttta agatcacaaa ttgtgatctt
     6781 aaagatagcc attcgttttc tgttaattga aaacgaaata tgtcaggaaa tcgctcttca
     6841 ttccgtttta ctgcttggtt aaaggttcga gtatctacct gataaagctc tgccaaatga
     6901 acatctagca ttacttgctc gccacgaata gtaaaaattt tagagttaat gtttggttca
     6961 attaattgaa ttggattcat ctttcttcct tattcttcag tgaagatcac ttttgtgatc
     7021 tcaaaataag aaagactatg ccaatttttg gcctatacca cgagcagatt tttctgcttt
     7081 ttcgatgaat atcacaaaaa tactttgcaa catttttcta aaatttaacc gcttgtaaag
     7141 gtcactgatt gtgacctaga gtaagttagc cgcctcacta tccaaatacc attccgttac
     7201 cccattttcc gcctgaattt tggcggcagg ataaggtaaa ttttctgccg gagtggtttg
     7261 gatttctttt aaaatttccg ctttgcttgc tcctgtgacc aagtaagtga tccgtttggc
     7321 tttttcaatt aaagatgccg ttttggaaat gcggatctgc cctgtttctg ggtatttggc
     7381 gatcacggca acgttctgat cattaaaatc tgtttgatgt gggaacagtg aggcggtatg
     7441 cccgtctgtt cccattccta aaataatcca atcaaacgcc aagttcggca cacaagcggt
     7501 caattctgcc gaaaatcttg caagttcttg ttctacattc tcttcaccac gaatgcggtg
     7561 aatattttcg cttggaatgt cgatgtgatc gaacagtaat ttctgcactt cgccgtagtt
     7621 actttcggga tcggttgggg caaccattcg atcatccccc caccagaaat gcaggttttg
     7681 ccattgaatt tcggtattaa acggtgcttg agctaaggtt ttgaataata atttgggggt
     7741 tgaaccaccg gaaagggaaa tatgcaccgg gcggttttga tggctgtatt caataaactc
     7801 tttagcaatt tgttcaaccg cagcttgggc ggtggggaaa ataactttat tcataatttg
     7861 cctcgttaga tcacccctct ttagaaaaga ggggaggggg agatttgatt acgatttcaa
     7921 tatttcgtat gagcgtatat aacttctgcc aaatctcccc tagcccctct ttgctaaaga
     7981 ggggaactga aatttacact ttcttcttca ttgtaccgga cggttttcgc catactttgc
     8041 cgtgtctggc gattaattta tctgcctcgg ttggccccca agtgccggat tcatattcat
     8101 acacacgccc acgattagct ttgtaggcta aaatcggttg cacaaatttc caacaagcgt
     8161 gtacagcatc agtacgggca aataaggttg catcaccttt aagtgcgtct aatagtaagc
     8221 gttcataagc ggtgagtaag cttgatgatg aacttaaatc agaatagcgg aaatccattg
     8281 agacttcttt cgcttcaaag cctgctcccg gttttttcaa gccgaaacgc attgaaatgc
     8341 cttcgtccgg ttgcacacga ataatcaatt tattttccgg agcattttgg ctaaataccg
     8401 ggtgtggtgt agttttaaaa tgaattacga tttccgtcac acgggttggt aagcgtttac
     8461 cggttcgcac atagaacggc acacctgccc aacgccagtt atcgatttta cattttaccg
     8521 ccataaaggt ttcagtgttg gaatcagccg gcacgccttt ttcttccaag taagccggca
     8581 cttctttgcc gtctaccgtg ccacgagcat actgacctaa caccacattg tgtttaacgt
     8641 cttcttcagt taacggatgc aagcaatata gcacttttgc gacttcatca cgcattgaat
     8701 tagcattaat aattgccggt ggctccattg caaccatggc taatacttgc aataagtggt
     8761 tttggaacat atcacgcatt gcccccgagc catcatagta accgccacga tcttcaacgc
     8821 cgatggattc tgccccggta atttccacat aatcaataaa attacggttc caaagcggtt
     8881 caaataagcc gttagaaaaa cgtaaaacga gtaagttttg taccgtttct ttacctaaat
     8941 agtggtcgat acggtagatt tgatgctctt caaagcattt gtggatttgt acgtctaatt
     9001 ttttggcggt ttcgatatcg tagccgaatg gtttttcaac aataatccgt ttccagccaa
     9061 actcttcggt agttaagccg tgagcggcta aacattccgg aatcacgcca tataaacttg
     9121 gtggcgtgga gaggtaataa agcgtgttac cggctgtttg atatttatcg tgtagctcat
     9181 caagacgagg cagcaacttg gcataatcca ctgcatcaga ggtatttaca gcttggtaat
     9241 aaagatgttc gcaaaattta tctaattctt caccgcttgc tttttcaaat ttgactaacg
     9301 catcacgcat tttttggcgg aaagattcgt cggttaattc tgaacgagaa acacctagga
     9361 cggaaaaatg ctcgcccaat ctgccaatct tatataagtt ataaagagca ggaattaatt
     9421 tacgaaaagt taagtcaccg gaagcaccaa aaatgacgat acagctattt tcagcattca
     9481 tttatttatc ctattgctaa ttgttaaaat tttgttgggt gcaagattat cataaaaatt
     9541 gctaatcgga actacctatt tgaataaaaa tattttatcc caatctatcg agccgtcagc
     9601 caccatcaca aaataaggat taatcaaact ttctcgctga ttataagtca gcggcgaaaa
     9661 attaaagtcg aaaattttgc cgcccatttc acttaacagc acttctgcca cagcagtatc
     9721 ccattcgccg gtgtcaccaa aacggatata acaatcggct ttcccttctg ccactaaacc
     9781 ggcttttaga ctgcccgaac catattttac acactcaatt tgtggggctg aaatggcatt
     9841 tttagcttgt tctgcatgta aatcgctgcc tacggtaaca atcaaaaggg cattctccgc
     9901 acgtttcggt ttgacaagcg gtcgaatttc tccattttct tgcaaaaagc taccgctacc
     9961 ttccatacta aaataggttt ttcctaatat cggagcatga ataacgccca gcaccggctg
    10021 atttctaccc tcacgttttt gcactaacgc aatcaccact gaaaattgac cggtgcggtt
    10081 aataaactgt tgtgtgccgt caatcgggtc gataatccaa tattcttgcc attgttggcg
    10141 ttcggcaaac ggaatatcgc aaaactcttc cgataatacc ggaatatctg gtgtgagttg
    10201 cttcaagcgt tcagttaaaa attggctgat aatcagatcc gcttccgtca ccggtgtgca
    10261 atcggctttg attttaattg ccaccgagcg ggcataaagc tgctttaact gctcaccggc
    10321 tgctttggca atattgataa tattctcgag taggggttga gttagcgttt gcataatagc
    10381 tccttgccta tttttttaag tattctcgta gcataaatag agcggacaaa ttccgtgctt
    10441 cggcaaaatc aggatctgcc aataattgat caattttatc caacggataa cgcacaattt
    10501 ccagcggttc aggctcatcg ccttccaatt ttgatgggta cagatcttgt gccaaaaaca
    10561 ggtgcattaa gccgtacata tggcttggcg aactgtaaag cgaccgcaga aaatctaatt
    10621 ttttcgcccc aaaaccaatt tcttcttgta attcacggtt cgcactctca atcggctctt
    10681 cacctgcatc cacaatgcct ttcggaaaac ccagctcgta acgctccgag ccgaccgcat
    10741 actctttcac aaaaatcagc tcgttgtttt gaatcggaat caccattacc gaagaacggc
    10801 gattcggcgt aagtcgttcg taagttcgct cttcgccatt agaaaagcgt aaatcgaccg
    10861 cttgcacctc aaaaatgcga gatttcgcta ctgttttaat gttcaaaatt tcaggaagtt
    10921 gttttatcat tttatctcac ctttttgagt tattttagtt gaaaaatctc actttcgctc
    10981 taatatttcg actattgttt tgattttaag gcagaaaatg aaaaataaac acgaaaaaga
    11041 acaaaacgac gccgaagttc ggctagataa atggctttgg gcggctcgtt tttataaaac
    11101 ccgttcgatt gccaaagcaa tgattgaagg gggtaaagtc cattataatg ggcaaagagc
    11161 taaagttagc aaagcggtgg agatcggtgc catcatcaaa cttcgccaag gcaatgaaga
    11221 aaaagaggtg gaagtgttag ccctcagtga ccaacgccga ggggctccgg aagcccaact
    11281 gctctacagt gaaaccgaaa aaagcattaa acaccgtgag gcaatggcat ttgcccgcaa
    11341 agcgaatgct ctttcaatgc cacaccctga tcgccgtcca aacaaaaaag aacggcggga
    11401 tttaatcaaa ttcaaagagc aagaatttag ctaagccctt gcaatcagaa aaataatccc
    11461 tatattgaat atcctaagta ggggcgaaaa atttttcgcc cctatataat tatttcgggc
    11521 gaacattgat tcgcccctac agcgttcgat ttgcacattt ttagccacaa aatgcaatgc
    11581 attttgaacg ttggctttgc caacggctcc gtaggagcga acaaaattag aaataatttt
    11641 gtgagtaata atcgaccgct tgcaacgagg aatcaaaatg aattacacca aagacaatga
    11701 caaactctac cgctatttat tcaaagaccg agcggtacgg ggcgaatggg tgcgtttaaa
    11761 caacaccttt accgagacct taaacaccca tcactaccct aaagcagtac aaaatttact
    11821 cggagaaatg ttagtcgcaa ccagtttgct gactgcaaca atgaaattta acggcaacat
    11881 tactgtgcag attcaaggtg acagcccgtt aaaattggcg gttgtgaacg gtaacgacca
    11941 acagcaactc cgtgctttag cccgtgttca ggcagatatt gcagacacag cctcgttagc
    12001 ggaaatgatc ggcaatggtg tattagtgat ttctattatc ccaaccgatg gtgaacgtta
    12061 tcaaggggtg attgctctcg ataaaccaac cattcgtgaa tgtttagaag attacttcgc
    12121 ccgctccgag caattacaaa cccacctcgt tatccgcaca ggcgaatttg aaggcaaagc
    12181 agtggcaggc ggtatgttgc tacaaattat gccggacggc acaggctcaa gagatgattt
    12241 tgagcattta gccacgctca ctgaaaccgt aaaagatgaa gagttatttg gtttagaggc
    12301 agaagaattg ctctatcgcc tctaccacga agagcaagta gaagtttacc caccacaaga
    12361 tactgaattt aaatgtggct gctcaagaga gcgttcaggc tccgcattat tactggtgcc
    12421 ggcagaagaa atcgaagaaa tgttggagga aaaacaaggc gtgatcgata tgcaatgtga
    12481 atgctgcggg acacaatatt tctttgacaa agcggcgatt gaaggcttta aggaagaaac
    12541 tgaaaaatta agtaagttag ggttaaatta agctaaacaa gcggtcaagt ttcttgtctt
    12601 ttttgcaatt tgtaaaaaaa cggtgaaatt tgaccgcttg cattttactt atttgagcct
    12661 tctgggtgta acccaatccc tttgtggcgt tcttttagtt tagcattgat ctctgcccac
    12721 gagagatcgg cattgtgcaa taacaccgtt aagtgataca tcagatcagc cacttcaccg
    12781 accaactctt cccgatcatt tttcattgcc gcaatcacgc tttctactgc ctcttcccct
    12841 actttttgga cgatttttgg cgtgcctttg gcgtaaagtt tagcggtata agaactttcc
    12901 ggatcagcat ttttacgttc ggctatcatt cgttctaatt tgctgaaaaa gatccaatct
    12961 ggttgttctt gttcaaactg atgaaaacag ctctccgccc ccgtatggca ggtttcgccg
    13021 atagggttag cgaggattaa cagggtgtcg ttatcacaat ccaaactcat atccaccacg
    13081 tttaggaaat tgcccgaggt ttcgcctttc gtccacagcc gttgtttagt acgggagtaa
    13141 aaagtcactc gcttttcagc cagcgttttt tcgagggctt gttggttcat atatcctaac
    13201 atcagtactt cgcaggtttg ggcgttttgg acgataacgg gcagtaagcc gtccactttt
    13261 tgccagtcta ttttattttg cattttttct tccttttttt gaccgcttgt ttagacatat
    13321 aggcttattt caatcaaatt accatcaggg tcacggcaat aaaccgactc aatttttccc
    13381 actgcccccg tacgaggcac aatcccacct tccaaaatct ccacctgatg tcgctgtaac
    13441 acatagataa cctcctgaag tggagttacc gttaagaggc ataaatctgc cgtgccacaa
    13501 tcggcatttt gggcattggg taggatttct gcaccttttt ggtggaggtt gattttctgt
    13561 gtgccaaaca aaagcgcttt gcgattatcg ccaaaggtga tttcttgcat acccaaaatg
    13621 gtcgtataaa aatcaatggt tttttgcata tcggcaacgg ttaaaaccag atgatctaag
    13681 gcagtaatct taatcatcta cgcacctcaa ccccttcctt cgccaaatat tccttcaact
    13741 ccccaatatt gataatttgt ttatgaaaca cactcgctgc caacgcacca tccacatttg
    13801 cctcaataaa agcatcacgg aaatgcacca tttcgcctgc accgcctgag gcgatgagtg
    13861 ggacttggca aacttcacgc acttttttca gttgcaccaa atcgtagccg ttgcgtacgc
    13921 cgtcttggtt catcatattc agcacgattt cgcctgctcc tcgcttttgc acttcctcca
    13981 cccaatccaa caattgccat tcggtttggc gggtgcgttt ttcatcgccg gtatattgat
    14041 tgacccaata tttgccggtt tctgcctcga accagctatc aataccaacc accaccgcct
    14101 gcacgccaaa gcgctttgcc agttcggtaa tcagctcggg gttggcaagg gctggggaat
    14161 tgatggagat tttgtccgct ccgaaagcga aaatctgctc cgcatcggca atggttttga
    14221 ttccgcctgc cacacagaac ggaatatcaa tcacctgtgc cacacgttcc acccagcttt
    14281 tatccaccgt tctgctgtca cttgaggcgg taatatcgta aaacaccaac tcatccgccc
    14341 cctcttgggc ataacgctgg gcgagtggca caatgtcgcc gatgatttcg tggttgcgga
    14401 actgcacgcc tttcacaact tgcccgtcac gcacgtctaa acaaggaatt atccgttttg
    14461 ccaacattcg attgcctccg ctacattaaa tttaccttcc aacaacgcac gaccgacaat
    14521 cacgccagcc acgcccgtac cacaaagcgc tttgatgtcg gcaagcgagc cgataccgcc
    14581 tgaggactga aattgaatct ctgggtattt ggcacagatt tctcgataga gatctacatt
    14641 tgaacctgcc agcgtgccgt ctcgggaaat gtcggtgcat aaaacgtgtt gcaagcccac
    14701 ggtttgataa tcttcaatca actcctcgag cgacacacca cttgcctctt gccagccgct
    14761 catcgcaatg attttttgac cgattgcatc aatgttcaca tccagtgcca gcacaaattt
    14821 ctccgcaccg tactttttga accagccttt aaccatttca cgctctttta ccgcagtcga
    14881 accaatcacc acacggtttg ctccaacagc aagtaaatcc gccacatcct gctcggtgcg
    14941 gataccgccg cccacttgaa ttttgcagtg ggtttcacga ataattttgc cgataagtgc
    15001 ggtctgtctt tgagccggat ttttcgcccc tgtaagatcg accaaatgta actgctccgc
    15061 cccttgtgcc aagtagtcgg caaattgggc aatcgggtca tcggcataag tcgtctgttt
    15121 cgcataatcg ccctgatgta ggcgaactac ttgcccatcg ataaggtcga gggcggggat
    15181 aatgatggat ttttgcatat tattgttcct gtgtgcctag cacgagccgt gctaggctga
    15241 ataatcccag tcgcgctgcg actgcctctc taagctacgg agtagcttgg tttatctagc
    15301 cccatacggc tcgtatgggg tacaagcggt caaattcttc caaaaacttg caaaaaaccg
    15361 accgcactta tttcttcacc tgtttcgcca cttgttcaat caccgcagcg aaatcaatcg
    15421 cattttgttg cgtaatcacc ggtttgccgg tctctgcctc caaactttcc cgagccactt
    15481 ttgcaacatt tccgccccgt ttggcaacgg ttttattttc ttccaagccc tgtgggtggc
    15541 tgatttgagc gatgtctttg gtggcagcct cagcaagcat attcagcacc aactcggtgg
    15601 tcgtcatatt gtctcgcaga ctttcctttt tcagcccttt gaaatcctta tattggcgag
    15661 tagtcatacc gctccacgcc tgtgtgattt cattggtgag aatcgcaaat tctctgccca
    15721 cttgcacacc gtgatcttgc caagtatccg tcagttcttt tcgcacctga atggcttgca
    15781 agcgttggtt aatccactca cgggaatatc cctttttcaa gtaagtagcc aaagctcggt
    15841 caatggtcaa ttcaggatcg ataatctcat caatccgctc tttgcctacc tctgccagcc
    15901 acattttcaa cggctcggct ttcgggcttg gcacagactg aataatacgg aaaatgcctt
    15961 gtaaatccgt ggcatcggtt tcccgcattt ttccgtctgg ggcttttaat ttcaactgta
    16021 cgattttttc gtacagttca attccgccct cttcgtcctt gattttccgc tttaaatcac
    16081 tccaataacg gcgtggattg ctactttgcg tcagcacctc gataatgtcc accaccgaga
    16141 aaaaccactc ttctttttcg ctatcccaca ccgagcggat ttggctgttt tcaaatagtt
    16201 taatttcgtt catttctcac cttctttcac tggttaaatt aacagtaatt ttgtcgaaat
    16261 aaagcgagaa atcaagccct attttcaaac ttttcgatcg agatcacaaa atcagacatt
    16321 ctccacaaaa ttcctgagca acttcgcccc agcctcgccc gaacgctcgg ggtggaactg
    16381 tacgccgtag aagttttggc tggcaatggc agcggaaaac ggcacgccgt agtcgcaggt
    16441 ggcgatggtg ttctcattcg gtagcacacc gtagctatgc acaaaataga aatgattgcc
    16501 ttgctcaatg tcgtgaaata gcggatggtc ggcttggtat tgcaccttgt tccagcccat
    16561 atgcggcaac ggcaaaccgc attcaggcaa gcgttcggtt ttgccactca ttaagttcag
    16621 tgttgccaca tcgccttcgt gggaaaagtc cgtcattaac tgcattccta agcagatgcc
    16681 aagcatcggc tgggtggcgt tgcgaatggt gtcgataagt cggcgatcgt gcaagatcgc
    16741 catcgccgcc gctgctgttc ccacaccggg gagtagcaat ttatcggcag attggatttt
    16801 gttgagatct cgcgagatct cagcccgaat gccaagacgg tcaaaagcaa atttgaccga
    16861 agacaggttg gcacagcctg tgtcgatgat ggtgaggttg gtcatttagt ttcctgagtt
    16921 aagtatttct tatagtgaag taaaattgac tcaatatatc tgtttccttc aaaagcttt
//
LOCUS       DANLXB010000041        16716 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLXB010000041 DANLXB010000000
VERSION     DANLXB010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16716
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..331)
                     /locus_tag="PXD41_000852"
     CDS             complement(<1..331)
                     /locus_tag="PXD41_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6288402.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLE
                     ILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNLFCYA"
     gene            complement(370..594)
                     /locus_tag="PXD41_000853"
     CDS             complement(370..594)
                     /locus_tag="PXD41_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase N-4/N-6"
                     /protein_id="HDL6288403.1"
                     /translation="MTTLTWYGKEEAVKKAKQTPYCLLRELPDFSHNIARQPTADSRQ
                     PTADSRQPTADSRQPTAQLLLKPYLKSSKI"
     gene            complement(735..3221)
                     /gene="torA"
                     /locus_tag="PXD41_000854"
     CDS             complement(735..3221)
                     /gene="torA"
                     /locus_tag="PXD41_000854"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6288404.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(3240..3436)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(3440..4555)
                     /locus_tag="PXD41_000855"
     CDS             complement(3440..4555)
                     /locus_tag="PXD41_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6288405.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(4697..6448)
                     /locus_tag="PXD41_000856"
     CDS             complement(4697..6448)
                     /locus_tag="PXD41_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288406.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      6612..6768
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            6757..7782
                     /gene="moaA"
                     /locus_tag="PXD41_000857"
     CDS             6757..7782
                     /gene="moaA"
                     /locus_tag="PXD41_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL6288407.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            8283..8759
                     /gene="moaC"
                     /locus_tag="PXD41_000858"
     CDS             8283..8759
                     /gene="moaC"
                     /locus_tag="PXD41_000858"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL6288408.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            8752..8997
                     /gene="moaD"
                     /locus_tag="PXD41_000859"
     CDS             8752..8997
                     /gene="moaD"
                     /locus_tag="PXD41_000859"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL6288409.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            8999..9454
                     /gene="moaE"
                     /locus_tag="PXD41_000860"
     CDS             8999..9454
                     /gene="moaE"
                     /locus_tag="PXD41_000860"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL6288410.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            9487..9969
                     /gene="ybeY"
                     /locus_tag="PXD41_000861"
     CDS             9487..9969
                     /gene="ybeY"
                     /locus_tag="PXD41_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL6288411.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            10047..12065
                     /locus_tag="PXD41_000862"
     CDS             10047..12065
                     /locus_tag="PXD41_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL6288412.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSFKIIYRFYYIFLCFCSC"
     gene            12130..13320
                     /locus_tag="PXD41_000863"
     CDS             12130..13320
                     /locus_tag="PXD41_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL6288413.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(13427..14728)
                     /gene="folC"
                     /locus_tag="PXD41_000864"
     CDS             complement(13427..14728)
                     /gene="folC"
                     /locus_tag="PXD41_000864"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL6288414.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(14738..15634)
                     /gene="accD"
                     /locus_tag="PXD41_000865"
     CDS             complement(14738..15634)
                     /gene="accD"
                     /locus_tag="PXD41_000865"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL6288415.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            15943..16716
                     /gene="mazG"
                     /locus_tag="PXD41_000866"
                     /pseudo
     CDS             15943..16716
                     /gene="mazG"
                     /locus_tag="PXD41_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600778.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT         4879 a         3506 c         3470 g         4861 t
ORIGIN      
        1 ttgcatagca aaataaatta tctgtaactt taccaacttt gcctaaaaaa gatggtttcc
       61 ttttcttttc ccaaattaag ttagaaatga aattcttccg cccaaaaatt tcatcaagca
      121 taattttcaa atagtgactt tcgttatcat caagagtgat ccaaattgaa ccatcttcgg
      181 caagtaactc tcgcagaatt tcaaggcgtg gatacatcat tgaaagccaa atggaatgct
      241 ctaaattatc atcgtagtgg gtaaaggccg attttgtgtt atagggagga tcaataaaaa
      301 tacatttgac ttgccccgca taaaagggca aaagagattt taaggctgat aaattatcac
      361 cctgaataat taaattttgc ttgactttag ataaggtttc agcagaagct gagctgtcgg
      421 ctgtcggctg tcggctgtcg gctgtcggct gtcggctgtc ggctgtcggc tgtcggctgt
      481 cggctgtcgg gcaatattat gcgagaagtc cggcaactca cgcaataggc aatatggggt
      541 ttgttttgct tttttgacgg cttcttcttt gccgtaccaa gtaagggttg tcataaaatg
      601 cacctgaaaa gtaaaagtgg attattgtaa caagcggtca aaaaaataga aagttttaca
      661 aaaaattaag caaatttaac cgcttgcaac atagaaaagg cacagtttta tactgtgcct
      721 ttggttatat gaaattagcc ttgtgtgtat ttaggctctt taaatactgt tacttctggt
      781 gcttgtccgg tgaatttttc aacctgtacc gtagcggtat ttggtgagtt accctgtgct
      841 aattttgatg tgccttcatc acgggttagc acgttagggt tgccgttttt acatagcggt
      901 tgctcgctgg tgccgagatc gagcggatcg taccaagctc cttcgtgcaa ggctaatgta
      961 cctttgataa tgccatctgt caccaccgca ccggctaata cttgaccacg tttgttaaaa
     1021 atacgtacaa tatcaccgct tgtaatgcca cgagcggcgg catcttcagt atggatcaac
     1081 accggctcac ggtcattaac cgcatattgt ttgcgtaatg atgagtaagc taactggctg
     1141 tgtaaacgcc atttagagtg tggagtcacc aatgccaacg gttcttctgc ggtggtttta
     1201 cccgagtatt cttcgtgttc catccaagtt gggtgacctt tacagtcatc ataattcatt
     1261 ttggcaatca cctcagagaa aatctcaatt ttgccggacg gtgtgcctaa tggatttagg
     1321 agtgggtcat tacgaaattc ttcataacga acccattttt tcgctttgtc tgatgcttta
     1381 aaagaaagtg gtttattctc ttgccagaat ttctcgaatt tcggcataat cacacgattt
     1441 ttgcgtgctg cctcaaatgc agtttgatag aaactttgta gccaatccat ttcagatttg
     1501 ccttcggtaa attccgcttc tttgcctgca cgtttggcta gttcggcaaa aatatcgtag
     1561 tcgttttttg cctcaaattg cggttcgacc acctgtttca tcgggaaaat attcatcatt
     1621 gaataatcgc ccgacatagt taagtcatta cgctcatagc tggtggttgc cggcagcacg
     1681 atgtcagaca tacgagccgt tggtgtccaa tggcattcat tgacgataat agtatccggt
     1741 ttttgccacg ctttcaccaa agtgttggtg tcttggtggt gggtaaacgg attaccccct
     1801 gcccaataga caattttgat atcaggataa gtaatttgtg tgccattgta atcaatggtt
     1861 ttgcccgggt tgagcagtgc atcggaaata cgagccaccg ggaatgaaga ttttgatgtt
     1921 tcatctaacc aggttttcgc tccggcttct actgccggat ttgctgtgat agagcctaaa
     1981 atgccccctg tggcactcgg cacgccgccg tttgagtaat ggtagcttaa accgaaacca
     2041 ccacccggta agccgatttg acctaacatt gcagctaggg tgactaacat ccaatgccct
     2101 tgttcaccgt gtcgttggcg ttgaatcccc cagcctgcca ttaacattgt gcgtttagat
     2161 tggaaatcag tcgctaattt tttaatggtt tcttccggca caccacaaat ttgacttgcc
     2221 cattttgcat ctttcggttg attgtctgtt ttaccgagca gatattcttc aaacttctca
     2281 aaaccggtgg tgtatttttt aaggaatgct tgatcgtgtt tgccttcagc gactaaggta
     2341 tgagccatac cgagcattaa cgcaacatca gtgccggtgt ttaccggtac ccattctgca
     2401 cctaaaaatt cgcaagattc actttttacc gggtcaatac agataatgcg tttcccgctc
     2461 tctttgagtt ttttgaagta ttcaatacct tgttgatcgg tagaagtcca cgcaatgcgt
     2521 agcgtattta acgggttagc tgaccaaagc accacaatat ctgaactttc taaaatcact
     2581 tcccaactag tttgctgttc gtacacctcg attgtaccca agacgtgtgg cataatcact
     2641 tgagcagcac cggtagaata gtcgcctttt acaccaacaa atccgccggt aacatttaaa
     2701 tagcgttgta acagtgtacg ggaagcgtgt aatgccccag aactatacca accgtaagaa
     2761 ccaccaaaaa tagcattcgc cccgtgagcc tcacgaacac gtttcatttc attcgcaact
     2821 aattcaaatg ccttatccca cgaaactcgc acccattcat cacgcccacg tagagtagta
     2881 tctttattac cttctaagta gcctttacgc accattgggt attttactcg tgtttcaccg
     2941 tgtacttggt ctgctaccac gtgttgcaat tcatttggca cagaaatctc aaaaacagaa
     3001 tcagatttca ccactttgcc attttctacc actacaccta aaggccccca gtgggcggca
     3061 gttactactg ttttcatctc ggctgctttg gcactggtgg aagctaatgc ccccactaca
     3121 ccggtagtac cactggctaa acctgcaccg gcagctaagc ttaatgatga attttttaga
     3181 aaaccgcgac gacttacgtc aatattgtct tgttttttca taataaacct cgtttgaagt
     3241 taagttaaaa atagacacct ttctaaagtc gagtggataa accatttctc gtgtatccat
     3301 tggtaaaagc accgacggta atttttgcaa aatgttagga aaaaatgacc gcttgtagta
     3361 ggtgctttac ggcttgctac catatctctg ctctcagcag acacttaggc tcacaagctc
     3421 ggtatcctct aagttgcaat taatgggaac tgcctgctac atcttttgca ttacgttgga
     3481 gatagatagt caccgcacgc acatcatcag ccgacataga tgttctgtct ttcattgaat
     3541 ttaccacccc aatccattga tttgcggtgt aatgttctgc cccaatcggt gcatggcaac
     3601 cgctacagtg tgtttggttt aagttatcgc caaaatgatt tagtgcagta atattggcag
     3661 tgactgcatt tttaggagca gtaatttcaa aattgatttc tttccaattt gagttggtga
     3721 cattatcaaa cactgttttt gtgacattca ctttgctttg agcgtcatca ggtagaagag
     3781 caaccataat acgcttgcct aaatccatat acaccacaga ttccgcacct tcttgttgcc
     3841 agccattaac cgttgcttta acctgctcgc cttctgctgt ccattgatgt aattctgcat
     3901 aaggtaacaa gcgaatttct ccaccttgag cgagctgcac tggagtcatt gcgagcgtat
     3961 aaagggtttt atcatttgtg ctaaattccg caccgtgttt agctaattcg cccattgctg
     4021 cggcattatc taccggcaca tcaggcataa aatgggcaat tcctttatgg caatcaatac
     4081 aggtttgatt agtttcttgg gctagtttgt gcattttctg tgccgcttct gtttgttcag
     4141 aaagtaccat cgcatcaaaa ctatgacagc ttttacaggt catagaatcg ttttctttca
     4201 tttctgccca aacacgttgt gccatttcta gacgatgggc ttcataggct tcttgatcag
     4261 gtaatttatt ggttacaacg gtgtgccaaa catcttttaa tgcgatgatt ttagctttga
     4321 cataatgcaa gccgtcttgt ggtagatggc aatccgaaca ctcggctcga attcccttac
     4381 ggttggaaaa atggacactg ccttcccact ctgcctgtgg gtgagtcata gaatggcagc
     4441 tcacacaaaa ttctgttgag ctggtggctt tcattgcata ttgtgtgcca cctaataccg
     4501 cagcacctaa tgccataata ccgacaaata cagcaatttt tttcatctta gccataaatt
     4561 accccactta atacactaaa aattaaagac agaggcattg tattaactcc caagaggtat
     4621 aaaaataagt aaaaatacct attacctcga aagagtgaga ataatttgat ctaaggcaaa
     4681 aatatgtagt gaaattttag gctttttcag agaaccacgg cggtaagata aattgtgcat
     4741 tggcaaacaa ctccggtgca atcacacggc tctgcccttg ttggatttgg taaaccaact
     4801 gtggcaagct gatagataag tcgtgggttt ctgcgtaagt taatccaatt tggctatcgg
     4861 tattaaaata gtaagtgccg tttaccccat aatgtggctg taagcggatc gcattggaga
     4921 cggctttaaa atgccgtggt gaaacactct gtttccacgc atttgccaga atattcgctt
     4981 ggtcataagc aatactggct tgggaataag tgggcgattt gccgaaaaac cgttcgtaat
     5041 gttggctaaa ctgtctgcct aaataatttt cgcttaaccc actattggta ctccaaagaa
     5101 cgccttcgca aagtttctcg tgtggcaaaa acgccgaagg tgcataaata ctgtaaataa
     5161 tggcatttgt tgggttgcga atgaacgttt gataaaactg tacaatatct tctgcaaaat
     5221 aagaggcaaa cacaataatg gaaggtgcga gattatgcac ctgtgccatt aatgtggcat
     5281 aattatcttg ctcttgggtg agttccagat aatccacatt ccagccttgc tcccgcaaac
     5341 ttagggttaa actttcaata ccgatatcaa ctttttgcca actcaccgtt accaccatca
     5401 ccgttttatt ctgaagccaa ggggcataat ggtaacggta atattgcaga aagtgagata
     5461 tacctaagcc ataggttaca tcactggcgc aaacctgaaa catattttca attcgttgat
     5521 tcggtaaatt ttgggcaagt ttatttgagc cactatgggt tgcaatatgc aaataaggaa
     5581 tgcctttagt tgcaattaat tcgtgtactt ccggcaagta gcaggcataa gcggtggaaa
     5641 tcgcatcaac ttcttgatca aataaatgat ggtatgcctg aagaatactt gctttatctt
     5701 taacataaaa cccagccgtt gcaacctgta cttctctgcc gtgaatacca ccttgttgat
     5761 tgatggtctc aaccgcaagt tgagtgccgt taagtagctc tcgggtatcg atttgcccaa
     5821 taccctgttc aacataaggc acgccaataa taatcggacg actatgatgg tggtttatcg
     5881 taaaaatcgg tggttcgtgt cgagttgaag ccgttacaag cggttgtttt ttcgcgataa
     5941 tttgcaatgc cagttgttca atgttaaagc tggcaagaat ggattgggtt agttttcccg
     6001 gtgtgggtaa acagattaaa tgttcggtaa tggcaaaaac agctaataag gttcggcttt
     6061 tggtatgtgt tttcgcaaaa atattttcga tatgtttatc aacagtccgt ttgctgatac
     6121 aaagctcatt ggcgatatcc tcattgctca aaccactgct aattagagtg agaagctcaa
     6181 tctccctttt actcagtcca taaggcaaat cggtatgctc tgcttgagtc aatacaaacg
     6241 attggtggcg ttctaggctg atcttaagcc attgatggtt tgaactatag taaaactgca
     6301 agctattttt atctgaatag agcaatgcct gtgcatagtg gcaaatttgc ggtaattcag
     6361 caaaatagtc tgcccctgct ttgtcttccc attctgatat ttcgccttgt tcatttacta
     6421 aacaagacca tcggctacgt ttatccattc tcacctcgaa ctaaaaacgt tagctaaaat
     6481 agcaaaatta tctcggcatt aatatgatat aaatcaaact aagcaacggt tgccagattt
     6541 ttataggtag agcatacaat ttaaattata cctcttgcct aattaggttt ctcaccataa
     6601 aatgaaaacc aatttattga agactccgag cattatttcc taactctaaa aattaaagac
     6661 aaatttttga tatggaattt atgccagtaa cagcataaag ctgttcaaag gataacttag
     6721 aaatgggttg tcctctcgtg tttagaaagg tgtcaaatgc agtctattat cccaattaaa
     6781 aacgtgggtg atgatgtcgt ttcaggttta gttgatcgct ttcagcgtca atatacttat
     6841 ttgcgactat ccattactga tgtttgtaac ttccgttgta attattgctt gcctgatggc
     6901 tataagccgc cttcacataa gcaaactttt cttagcgttg atgaaatcca gcgggtggct
     6961 aaagcctttg ccaatttagg gacggaaaaa atccgtatca ccggtggtga gccaacttta
     7021 cgcaaagatt tcctcgaaat cgctcacact atttcacaaa cacccggtat ccgtaaagtt
     7081 gccctaacca ccaacggcta tcgcctagag cgtgatgttg aactgtggca acaagccggt
     7141 attaccgata ttaatgtgag tgttgatagc cttgacccac gccaatttca actgattacc
     7201 ggcgagaaca agttgcaatc tattttaaag ggtattgata aagcctttga aattggctac
     7261 ccaaaaatta aagtcaatgc ggtgctaatg aagcaatata ccgcccctga attggataaa
     7321 ttcctcactt ggatcaaaga caagccgatt caaatgcggt ttattgagct gatggaaacc
     7381 ggtgaaatgg atagtttctt ccaagctcaa catctttctg gtcaatcggt gatgacccgc
     7441 ttattacaag aaggctggca attacaaccc aaagcgatgt ctgacggccc ggcaaaagtg
     7501 ctttctcacc ctgattttaa aggcgaaatc ggcttaatta tgccctacga gaaaaatttc
     7561 tgtgcctctt gcaaccgctt gcgtgtttcc gcacttggta aactgcatct ttgcttattt
     7621 ggtgaagaag ggattgatat tcgtgattta ctggcaagcg atgagcaaca gttacagctt
     7681 gaaacccgcc taaaatcttc cttacaaggc aagcgagaac accactattt gcatattggg
     7741 gatagtgggg ttaggaataa tttggcgagt atcggtggtt aaacaaccac cgagcgtgtt
     7801 ttttctgtta cttttctttg cttcgccaaa gaaaagtaac caaaagaaag gcgaccccag
     7861 attttcctta atccttcgct tgttgctaac ttttgggacg aacttttcaa actcgccaac
     7921 tgcgttggct caaacacgaa aagttgtcct caaaagttta cgcaatcgct acggcggaaa
     7981 ataggggcaa gcggtacatt atttaagatt tttgcaagtt tttatttaaa aataaccgct
     8041 tgtaatgttc cagcttctcc cttctgaacc gcctgagcga ctttgaattt ataggaaaaa
     8101 tttagtgttt gagccaacga agttggcgag ttttaaattt ttccgttaaa caaattcaaa
     8161 taaaatgaag atagcggtga agtagggtgt gctttctttg gttactttct ttgcacaagc
     8221 aaagaaagta acaagaagac gctcaatatt aattttacaa tcaaatttaa agagacaaac
     8281 aaatgacaac cttcacccac atcaaccaaa acggcgaagc caatatggtt gatgtttcaa
     8341 tgaaacaaga aaccgtacgc attgcccgag cggaggcatt tgtgcgaatg aatgccgaaa
     8401 cattacaaat gatcgtcagt ggtaatcacc acaaaggcga tgtattcgca accgctcgaa
     8461 ttgccggtat tcaggcggcg aagagaactt gggagctgat tccactctgc cacccgttat
     8521 tgctttctaa agtggaagtt caactggagg cgttgccgga aagcaaccaa gtgcgaattg
     8581 aatcactctg taaactaacc ggcaaaaccg gcgtggaaat ggaggcatta accgcagcta
     8641 gtgttgctgc tctgactatt tacgatatgt gtaaagccgt gcaaaaagat atgattattg
     8701 aaaatgtaag attacttagt aaaagtggcg gaaaatcagg agatttcaag gttgattaag
     8761 atactttttt tcgcccaagt gcgtgaactt gtggcaacgg atagactaga tgttgagcct
     8821 acttttacca ctgccgaagc gttgcgtgaa cacttaagcc aacagggtaa aaaatggcaa
     8881 cttgcccttg aaaaaggcaa actgctggtt gcaattaatc aaacgatctg cccgcttgaa
     8941 acggagatca aagacggcga tgaagtggca ttcttcccac cggtaaccgg gggctaaaat
     9001 gtttgaaacc ctgattgaag tacaagaagc tgaatttgac caaaaccgca tttaccaatg
     9061 gctcagtgaa caacatagcg tgggggcagc cactctattc atcggtaaag tacgtgaaat
     9121 gaatttgggc gataatgttt ccggtttgtt tcttgaacac tatccggcaa tgactaaaaa
     9181 agcattgcaa gaaattgtgg ctcaagctcg cactcgttgg gatttacaac gcgttgcggt
     9241 gattcaccgc attgggcaac tgcataccgg tgatgaaatc gtattagtcg gtgtgagttc
     9301 tgctcatcga ggtgatgcct accacgccaa cgagtttatt atggattatc tcaaaaccaa
     9361 agccccattt tggaaacgag aacaaaccca agccggtgaa cgttggattg aagggcgtga
     9421 gagtgaccaa caagccgcca aaaaatggca atagaaaaaa tggcaataat ttgcaaaagg
     9481 taacgaatgg aaaatttata tattgatttg cagatcgcct gcgaaaatac cgaaaactta
     9541 ccaagtgaac aacaatttta tacttgggta caaaaagccc tcgcagttga ggcaaaaacc
     9601 gatgatttcc ctgagagtga gatcaccatt cggattgtcg atgaagcaga aagccacgag
     9661 ctaaatctga cttatcgtgg taaagacaag ccaaccaatg tgctatcttt cccgtttgag
     9721 gcccccgaag gaatcgaaat gccactattg ggtgatttag tcatctgtcg tcaagtaatg
     9781 gaaaaagagg cggaagaaca aggtatttca gccgaatccc attgggctca tttggcgatt
     9841 cacggcacac ttcatctgct cggctacgac catattgagg aagatgaagc agtggaaatg
     9901 gaaagcctcg aaaccgaaat tatgcaaagt ttagggtatg aagatccgta tctttcagaa
     9961 aaaatatagt cttgtagggg agggtcctgt gccctccagt actccattat aatcggacag
    10021 gcacaggagc tgttcctaca agttatatga gaacgatcgc aatcataaca tctcctaaca
    10081 atgccgactt tattcaacaa ggctattttt acattcccga aaatcatcag cttaaagcta
    10141 tccccttttc caatgccaaa acgattttag gacaagaata cccttttgcc atttatacta
    10201 tgcaagcaga aaatggggtg aattttaact tagatgcttt tgcaatactt gccggcacta
    10261 ttcaagaaaa cggtacttta tttttgcttt gtcctcagtg ggataatttg gaaaatgaat
    10321 tagatttcga tgcgttacgt tggaacgaaa atcaggctat tgcctgcccg aatttctatc
    10381 aacattttaa acaattagtc gctaaatttg gttttgaagt cagaactaat ttgccaaaat
    10441 taccggctac aagcggtcaa attccttcaa aaatttacca attaacgcaa gaacagcaaa
    10501 atattttgca aaatctaccg cttgatcctg ccgatattca tttgattacc gcccctcgtg
    10561 ggcggggcaa atctaccctt gcagggcgac ttgcaaaagc gttacccgca caaaataagg
    10621 tattaattac cgcacggtct tattctgcat tgcccagttt ttggcgttcg gcagagcaaa
    10681 aaatcccttt tttcgcacct gacaatttaa tcgagcaagt taaaagtaaa aacatttcac
    10741 ctaaccaatg gctctttatt gatgaggcag ctagcctacc cttgccgata ctccacacac
    10801 tttgtgccta ttttgaaaaa gtggttttaa ccacaacaac ccaaaattac gaaggcacgg
    10861 ggcgaggatt tgagctgaaa ttcccggtaa tgttggataa accgtttaaa cattggacgt
    10921 tatctcaacc attgcggtgg agcgaaaatg atcctctcga agcatttgtg actgagttgc
    10981 tattactttc cgaagaaaaa tctcccctct ttagcaaaga ggggaagggg gagatttatt
    11041 cgcttcgctc acactatgtg ccgttgctaa agcaacgttc aaacgcaaag cgtttgtggc
    11101 agaagcaatt atcgaagaat ataagttatt cgaataagca tttacaggaa aaaatcgctt
    11161 tctaccactt actcgccaac gcccattaca aaaccactcc aactgactta cgccgtttat
    11221 ttgatggcga aaatcagctt ttgttttcac aacaggaaaa cgagcaactt atcggcggaa
    11281 tttgggcaat gcaagagggt ggtttagatg aaaaattaac ccaagccatt tggctagggg
    11341 aacgccgtcc gcaaggcagt ctagtggctc aatatctctg ttttcaaggg aatttaccgc
    11401 aggcttgcaa attgcattcc attcgcattt ctcggattgc ggtattgcct gaaaagcaaa
    11461 atcaaggcgt tggcaagcgg ttgatttctc agtttatttt gcaaaattcg gtagaaaaac
    11521 gaccgcttga ttttatctct gtgagctttg ggctaactac tccactccac gcattttggc
    11581 aatcttgtgg tttccaactt gtgcaaatca caccgaataa agaggcaagc agtggttatc
    11641 aaagtgcaat gatgatttac ccgatttcgg agcaaggaaa gttatttgca cagcaggcaa
    11701 cccaagcctt tgccagagat ttcgcccttc agccattttt cacggaaatt tgtgaggaat
    11761 tgcaaaattt cgaacaattt cgaccgcttg ccacacacaa tttagatgaa cgtgattgga
    11821 aaaatttaac cgcgtttgct catggcaagc ggacgttttc agcggcgtat gtgagtttaa
    11881 aacggcttta tttatcggat aaagcacgct tttcagagct ggatattttt gaacgaaaag
    11941 ggcaaaaaat ctccaaaatg gaggtggaaa attatcgaaa actcgttttg caaaacttaa
    12001 acaataaatc atttaaaata atttataggt tttattacat ttttttgtgt ttttgctctt
    12061 gctaaatctg caatttaatc gtataaattc actgtttatt tttcattttg atgaggaact
    12121 ccaatgtcaa tgtttagtca cattcaagct gctccggcag actcaatttt aggcttaggt
    12181 gaagcgttta aagcagatag ccgtgaaggt aaaatcaacc ttggtatcgg tgtttatatg
    12241 accgatgaag gcaaaacccc gattgtcaaa gcggtaaaag aagcagaaaa acgtttatta
    12301 gagacggaaa acagtaaaaa ttatttaacc attgacggtg ttcaagcatt caatgcggca
    12361 acgcaagcgt tattatttgg cgaaggggct gaagtgatta cctcaggtcg tgctaaaact
    12421 gcacagagtt taggtgggac aggggcatta cgcattgcgg cggaatttat caaacgtcat
    12481 acgaatgcga aaaatgtatg gatttcaacc ccgacttggc caaaccataa cggcattttt
    12541 gatgcagtag gcgtgaatgt aaaaggctat cgctactaca ataaagagac taacggttta
    12601 gattgggaaa atttaattgc cgatttaagc caagcggaag ccggagatgt ggtgttattg
    12661 cacggttgct gccacaaccc gaccggaatt gacccaacac ctgcacaatg ggaacagtta
    12721 gcagcattat ctgccgaaaa aggctggttg ccgttatttg actttgctta tcaaggcttt
    12781 gcaaacggtt tagaggaaga tgcttacggt ttacgagctt ttgtgaaaaa taaccgtgaa
    12841 ttgttggtcg caagctcatt ctcgaaaaac tttgggttat ataacgagcg tgtcggtgca
    12901 tttaccctaa ttgcagataa tgctgatgat gccaaccgtg ctttcactca aatcaaatcg
    12961 attattcgtg tactttactc taacccatct gctcacggtg caagtgcagt agcagttgca
    13021 ttggctgatc ctgaccttaa agcacaatgg attgcggaat tagatgaaat gcgtaaccgt
    13081 attaaagaaa tgcgtagcca attagtgcag aaattaaaag aaaaaggggc aaacaaagac
    13141 ttctctttca ttactgagca aaatggtatg ttctcattca gtggcttaac accggagcaa
    13201 gtggataagt taaaagatga gtttgcaatt tatgctgtgc gttcaggcag aatcaatgta
    13261 gcaggcatta ccagcaaaaa cattgatgct cttgccgatg cgattgtgaa agtgctttaa
    13321 ttaaacctta aagatatata gaggcataag cctgagtgct tgtgcctctt ttttatcttt
    13381 taggtacaag tgtggacact tgcaccaacg ttgattattc gtagaactag gtttccaacc
    13441 aaagcataaa atctgctacc gtatgaaatg agccgaacac cagcacaata tcattttcgt
    13501 tggctgtttc aaacaatact cggcttgcct gtgccacatt ttcatagcta caagcggttg
    13561 aatttggcaa aacgtttacc aatttcgcta acaccgcctc gcctgtttgt ccacgccaac
    13621 aatctagccc tgcacaatgc cattcatcaa taatattagc taatggctcg acaataccgg
    13681 ataaatcctt atcttctaac gcactaaaca ccgcatagat tttttgattt ggttgcttta
    13741 actcccgcag tttgtcagct aaataacgtg ctgcgtgtgg gttatgccct acatcaataa
    13801 ttacttttgc agccggttta ggttgagaaa aatgagtaaa atcggtatcc gtcagggttt
    13861 gaaaacgccc tgtcatttga gcttcattta aggcttgtcg aataatcttt tcatcaattt
    13921 caaatggcag ttgcattaat actgctaatg cggtgccggc gtttggaatc ggaataagcg
    13981 ggattggtaa atcggtaaag gatttttctt cagaatacca atgaaacaga ttattcttaa
    14041 tttcaaactg ccagtcttta ccccggtaaa aagcgtgaca atttaacgaa tcagcaatct
    14101 gtttaatcga atgagggcaa tcaggctcgc cgatgacaac cggaatattt tcacggaaaa
    14161 tgccggcttt ctcacgcccg atgtcttcac ggttatcgcc taaaaatgca acgtggtcga
    14221 tatcaatcga gataatcacg gcaaggcttg gatcaataat attagtggca tctaatcgcc
    14281 cacctaatcc gacttctaaa atcacaatat cgagctgatt ttgtttgaat agctcaaatg
    14341 cagacagcgt actaaactca aaataagtga gtgaagcggt cttttttgca ttaatttttg
    14401 caaatgcttg gacgtggtcg gcatcaggta atacttcgcc gttaattcgc acccgttcat
    14461 tatagtgaat taagtgcggt gaagagtaaa caccaacccg aaatccggct tttaataagg
    14521 taacttctaa caaacggcag gtcgaaccct tgccgttagt accggcaacg gtaatcacat
    14581 aaggggcagg cttgagtaaa tccagctctg ttgcgacctt acgaatacga tctaagccca
    14641 tatcaatcgg tttagaatgg gcttgttcta aataggaaag ccacgtttcc aaagaatccg
    14701 tggctttagg tatgcttaat gtattcattc agatatttta ttctgcgttt tctacaacca
    14761 attccgccac tttaaacggc gttggttgat tggttaattt tgcacaaaga cgggaaaggg
    14821 tatcacgcat ctctttacga tgcacgatca tatcaactgc cccgtgttct aataagaact
    14881 cggcacgttg gaaaccttcc ggcagttttt cacgtacggt ttgctcaatt acacgaggac
    14941 cagcaaagcc gattagggct tttggctcag caatattcac atcgcccagc attgccaaac
    15001 ttgcggaaac cccacctaaa gttgggtcgg ttaatacaga aataaacggt acgccctgct
    15061 ctttcatttt ggctaaaatc gcactggttt ttgccatttg cattaaagag aataacgcct
    15121 cttgcatacg agccccgccc gatgccgaaa aacagataaa cggaattttt tcagctaaag
    15181 ctttttccgc agctttcaca aattttgcac ctactacaga ccccattgaa ccgcccataa
    15241 actcaaagtt aaaggaggcc gtaaccaccg gcatattatg caatgtaccg gcaagcacga
    15301 taaaagaatc tttctcaccg gtttgttttt gcgcggcagt taaacgatct ttatatttct
    15361 ttaaatcttt aaatttcaac acatcttccg gctctaagtc ggcagcgatt tcgaccgcag
    15421 aatctttatc taacaaattc aataaacggg tgcgggcatc aatacgcata tgatgatcgc
    15481 attttggaca aacctgttgg ttgcgttgta attcttcgct atagagaact tgttcacaac
    15541 ttgtgcattt tgtccataca ccttccggca cttttgattt tgcattgctt gatgatgaag
    15601 agtctctacc taaaattctg tctaaccagc tcattattat tccttttgga ttgagttgtt
    15661 gggttcacta aatggttgct attaaagcat aatttatcgg tttttgatat gttttcttga
    15721 catatcagat cactaactat gtgtataagt tcgataaaaa aacgcaatca gaagaatgat
    15781 taacatcacc acaatttgaa ttaagcgttt tttggttaat ttttccgctg ccattgctct
    15841 gctcatactt aataaatttc cgcattataa gcgaaaaagc acgggctatg tagaatttgc
    15901 aaaattttga tcaaaaataa ccgcttgtaa aaaggaaata ctatggcaac cattgaacaa
    15961 tttcttgagg ttgtaaacca acttcgtcac cctgaacacg gctgcccgtg ggatctcaaa
    16021 cagaattttg acacgatgtt ccccacttat tggaagaaac ctacgaagta gcggaagcga
    16081 ttcacaccca agatcgcact gccttgcgtg aagagttagg cgatttatta ctgcaagtgg
    16141 tatttttaag ccaattagcg aaagaggaag gcagtttcac ttttgatgat gtagtaacgg
    16201 atattcacga taaactgatt taccgccacc ctcacgtttt tggtgatgtg aaagctacta
    16261 acagcgaaga ggccttacaa agttgggaag cacaaaaagc gaatgatgca aaacaccgta
    16321 gccaagattc tatttttaga tgatttacct tttgctttgc ctgctcttac ccgtgcaaat
    16381 aagctacaaa aacggtgtgc aaaagttgga ttcgattggg ataaccctca cgatgtgctg
    16441 gcaaaagtcg aagaagaact cgatgaagtc aaagcagaaa tcgcacaata tccggctcgc
    16501 tccatcgagc ttgctgaaga attaggcgat ctcttgtttg cgattgtaaa tttatgccgc
    16561 cattatcata ccgatgccga ggaaatttta cgcaatgcaa atctaaaatt tgaacatcgc
    16621 tttcgaaaag ttgaaaaatc tgtgaaaaaa tcgggaagaa ctgtaaaaga atgtaaatta
    16681 gaagaactag atgtaatttg gcacaaaata aaagtg
//
LOCUS       DANLXB010000042        16469 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLXB010000042 DANLXB010000000
VERSION     DANLXB010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16469
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(39..485)
                     /gene="dksA"
                     /locus_tag="PXD41_000867"
     CDS             complement(39..485)
                     /gene="dksA"
                     /locus_tag="PXD41_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL6288416.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(735..1688)
                     /gene="thiB"
                     /locus_tag="PXD41_000868"
     CDS             complement(735..1688)
                     /gene="thiB"
                     /locus_tag="PXD41_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL6288417.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(1732..1875)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2159..3145
                     /locus_tag="PXD41_000869"
     CDS             2159..3145
                     /locus_tag="PXD41_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL6288418.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(3199..3618)
                     /locus_tag="PXD41_000870"
     CDS             complement(3199..3618)
                     /locus_tag="PXD41_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL6288419.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(3696..4451)
                     /gene="kdsB"
                     /locus_tag="PXD41_000871"
     CDS             complement(3696..4451)
                     /gene="kdsB"
                     /locus_tag="PXD41_000871"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL6288420.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(4461..5414)
                     /gene="trxB"
                     /locus_tag="PXD41_000872"
     CDS             complement(4461..5414)
                     /gene="trxB"
                     /locus_tag="PXD41_000872"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL6288421.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            5581..6651
                     /gene="dhaK"
                     /locus_tag="PXD41_000873"
     CDS             5581..6651
                     /gene="dhaK"
                     /locus_tag="PXD41_000873"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL6288422.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            6672..7298
                     /gene="dhaL"
                     /locus_tag="PXD41_000874"
     CDS             6672..7298
                     /gene="dhaL"
                     /locus_tag="PXD41_000874"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL6288423.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            7308..7715
                     /gene="dhaM"
                     /locus_tag="PXD41_000875"
     CDS             7308..7715
                     /gene="dhaM"
                     /locus_tag="PXD41_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL6288424.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(7755..8600)
                     /locus_tag="PXD41_000876"
     CDS             complement(7755..8600)
                     /locus_tag="PXD41_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL6288425.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(8644..8970)
                     /gene="glpE"
                     /locus_tag="PXD41_000877"
     CDS             complement(8644..8970)
                     /gene="glpE"
                     /locus_tag="PXD41_000877"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL6288426.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            9121..9579
                     /gene="exbB"
                     /locus_tag="PXD41_000878"
     CDS             9121..9579
                     /gene="exbB"
                     /locus_tag="PXD41_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL6288427.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            9616..10053
                     /gene="exbD"
                     /locus_tag="PXD41_000879"
     CDS             9616..10053
                     /gene="exbD"
                     /locus_tag="PXD41_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL6288428.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            10069..10980
                     /locus_tag="PXD41_000880"
     CDS             10069..10980
                     /locus_tag="PXD41_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL6288429.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(11049..11930)
                     /gene="cysZ"
                     /locus_tag="PXD41_000881"
     CDS             complement(11049..11930)
                     /gene="cysZ"
                     /locus_tag="PXD41_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL6288430.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            12042..12944
                     /gene="zipA"
                     /locus_tag="PXD41_000882"
     CDS             12042..12944
                     /gene="zipA"
                     /locus_tag="PXD41_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL6288431.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            13009..15066
                     /gene="ligA"
                     /locus_tag="PXD41_000883"
     CDS             13009..15066
                     /gene="ligA"
                     /locus_tag="PXD41_000883"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL6288432.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(15129..16397)
                     /locus_tag="PXD41_000884"
     CDS             complement(15129..16397)
                     /locus_tag="PXD41_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6288433.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         5078 a         3557 c         3294 g         4540 t
ORIGIN      
        1 taaatgcctc ttaaaaaaga ggcaccctgt aaagttgatt ataagcctag ctgcttttct
       61 cgaatttcag ctaaagtttt acagtcaata cataaatcag ctgttgggcg tgcttctaaa
      121 cgtttaatcc caatttctac gccacaggtt tcgcaataac catattcatc ttcttggatt
      181 ttatacaagg tttgctcaat ttttttcaat aatttgcgtt cacgatcacg gttacgaagc
      241 tctaaactga actcttcttc ttgactggct cggtcgttcg gatcggcaaa gttagtcata
      301 tcttcttgaa gctggctttt ggtacgctcc gcttcttcca taatttgact gtgccacgct
      361 ttcagaattt tggtgaaatg ctcacgttga gcttcattca tatattcttc gtctttttta
      421 agctcataag gctcaacgcc tgctaatgct aataaaccga gtgaggtttt agccgcttga
      481 gtcatagata tttactcctt gttccctgtt tattggaagt tttattgtta aaattattgc
      541 ccgaatacag actaacttcc ttgtaaccgc actatacgaa aaaatcaaca tcttcgggtt
      601 ttaaataatg gcggctataa ataacacaaa aacgactcat taatcaaatg aatttgcaaa
      661 aattttgcat tcaaattgat ttgattgcac aaaaaaatag ccgaacatcc attcggctat
      721 ttttcaaaca ctttttacca gctctttgac caatcggcta accatttttg gatagtttca
      781 gtagtcggtg gcgtaaattc aatggtttta taggttggca ttgccgcaaa agccggatca
      841 acgccgtcgg ttaaaaccgg attcattacg ttgtggtaag aaataatatg ttgcgattcc
      901 ggtttgtgca aaaattcaag aaattgattt gccaatgctt tttgttggct gcttttgaca
      961 atagccgcat tttctacttg caccaaatgc ccttcctcaa acggagcagc cacatattta
     1021 tcggtgtttt cgtgccactt atgatataaa ggcgatgtag tatagcttag taccaaatcc
     1081 gactcgcctt ttaagaacgc tccataagtt tcagaccaac ctttgcctac cgttaccgta
     1141 tgttttgcca atgttttcca agcagttgga gcttcatcgc catacacttg atttacccac
     1201 attaagaagc cccgcccaac gctgctggta cgtgggtctt ggtaaatcac ttttaaatct
     1261 tggcgttcca ccaactcttt taaacttttt ggtggatttt tcagcttctc tttatcgtaa
     1321 ataaaagcat aagaacccgt gtcataaggg aagaaaattt tctgttgggt ttctaatttg
     1381 gtctttgctt caaactcggc aaacaagcca cttttttcgg cttcaggttg caggaaatta
     1441 tcaataccga ccaccacatc agctttggtt tttgctccct ccaaacgcaa gcggttgaac
     1501 atcgttacgc tatcgtcaag cggaacaaat ttgacatcac agccacactc tttctcaaaa
     1561 ttctgctcta atttaggagc aggtccatat tccgaagcaa acgagctgta agtgtaaacg
     1621 gttaaggtcg gttgattggc ataaacactt gcacttaata acgcaagtga agagaggata
     1681 aatttcataa caattccttc taaattaaat gaatagaagg atttaagaaa ggcaagttgc
     1741 tatctcaaat ccctacgctg atattaatca gatcaggttc tatgggtatt tctcagccac
     1801 aagcggttaa atttcggcaa aaatttgcaa atttttacgc aaaaacaacc gcttgttgca
     1861 ccccaatgag aacggcttca ttgtaaaaag tttgcaggca gatttcaacc aaagcaaacg
     1921 tttgctattt gtattaaaaa tccgtatact accgccctag tccaaacaag gaactagaaa
     1981 tgaattgcac aacatcggtt aaatcaaatt cccaacagct acgcttcaac tttagaggcg
     2041 tagctgtttt tctattcatt tcaaaccatt caaaatcgct gttatagcga ttttttttcg
     2101 cacgcttgca attaccgcaa gcggttgagc cacattaaca gagagaaaag gaataaaaat
     2161 gagccaattg attcgtaccc taaaaggaca tattcgtgat gaaatcatca aaaaaggcgg
     2221 ttgggtaaat gcacacgccc acgcagatcg tgcatttacg atgacgcctg aaaaaatcac
     2281 cgtttaccaa aatgcgaatc tacagcaaaa atgggatttg gtcgatgagg taaaacgtaa
     2341 ttcaagcgta gaagattact accgccgctt ttcccaagcg attgaattga tgatttcaca
     2401 aggggtaacg gcatttggta cttttgtgga tatcgaccaa gtatgtgaag acagagccat
     2461 tattgccgct cacaaagccc gtgaagtata taaaaacgac atcatcttga aatttgctaa
     2521 ccaaacgttg aaaggcgtga ttgaacccaa tgcgaaaaag tggttcgata tcggctcgga
     2581 aatggtggat atgattggtg gcttgcctta ccgtgacgaa ctggattacg gcaaaggctt
     2641 ggaagcaatg gatattttaa tggataaagc caaatcgctc ggcaaaatgc tccacgtcca
     2701 cgttgatcaa tttaactcac ctaaagaaaa agagaccgaa caactgtgtg ataaatcgat
     2761 tgagcatggt atgcaagggc gagtggttgc cattcacggg atttccatcg gctcgcaccc
     2821 gaaagaatat cgaaaaatgc tttaccaaaa aatgcgtgat agccaaatga tggtcattgc
     2881 ctgtccgatg gcgtggattg atagcggacg taaggaagat ttacaaccgt tccataacgc
     2941 tttaacccct gctgatgaac tcattcctga aggcattact gttgctatcg gcacagataa
     3001 tatctgtgat tatatggtac cgctttgcga gggcgatatg tggcaagaac tcagcctttt
     3061 atcagcaggc tgtcgtttta ctaacctaga agaaatggca aatattgcca gtatcaatgg
     3121 tcgaaaagta ctgggtttag tctaactgaa taaacgaaag gcgaacccta ggttcgcctt
     3181 taataacagc ataaccgatt atttaaacaa gttacccaaa atcccttttg ccgcttgagc
     3241 taataagtca tttgcatcaa agttttttaa gtcttcaaca ttaccattcg gggttaaagt
     3301 atccacgatt tttggcaaga actgggctaa taaatcgctc gcatcagcag catcaacacc
     3361 cgcttcttga gccacatttt gaatgttttc ttgcccgaac acattactga tttgttcgcc
     3421 cgaaacaggt gcattgtctt catcgctgct gatccaagtg cgtaacacat catctaatcc
     3481 gccttgttgg aatttggcaa tcagcccttc aatcccacct tgtgaggcga gtaaattttg
     3541 aattaattga gttgcagttg attggttatt gccactcaat actgaagaag ccaatgaacc
     3601 taaaatattt cctaacataa tttctcctat gcaagcggta caattttgcg aaaattttgc
     3661 aaaaaaacag caaacttcga ccgcttgtaa tcactttaac gagctaaaat ggctcgcact
     3721 ctttccaaat cttccggcgt atccaccccc acttgcgggg cttctttcgc cggttcgata
     3781 tgaatttttt caccgtgcca taaggctctt agttgctcaa gggactcaag ctgttctaat
     3841 tgtgtcggct gccacgccac atattgtttc acaaaaccgg ctcggtaagc gtaaatgccg
     3901 atatggcgta aataaccttg agcggcaaca aaactgtcat cacaatccgg aaaactgtct
     3961 ctggcaaacg gaatgctggc tcgggaaaaa taaagtgcca ttccgttttt gtctgccacc
     4021 actttcaccg catttgggtt aaatagctct tctcgggtcg ctaatttcac accgagtgtt
     4081 gccatattga cttgataagc atctaaattt tgagctacct gagtaacaat taccggtgga
     4141 atcagcggtt catcaccctg aatattcaca ataatttcgc tgtcggcaat ctgcattttt
     4201 tcgatcactt ccgccaaacg ctcagtgccg gaattgtgtt tttccgaagt catacagact
     4261 tccgccccaa aagattgagc gagggcttca atttcagggt gatcggtggc aataatcaca
     4321 cggcttgcac cggcaagctg agctttttcc caaacgtgtt gaatcatcgg tttgcctgca
     4381 atatccaaca acggcttacg aggcaaacgg ctggaagcgt aacgagcagg aataattaca
     4441 gtgaatttca taggctatcc ttatgcttct tgagcatcta agaaacgttc tgcatccagg
     4501 gctgccatac aacctgtgcc ggcagaggta atcgcttggc gatagttatg atccatcaca
     4561 tcaccggcag caaatacgcc ttccacagaa gtggcagtag cattgccttc caaacctgat
     4621 ttcactttaa tgtagccgtt ttcaagttct aattgacctt caaacattgc cgtattcggt
     4681 gcgtgcccaa tcgccacaaa gaaaccatca accttaattt cttcgctcaa ttcttctttg
     4741 gttgatttta aacgtaagcc ggtaacgccc atattatcgc ctaacacctc atcaaccgta
     4801 cggtctgtgt gcagaataat tttgccttct tcaatacgtt tttgcagacg accaagcaag
     4861 attttttcag cacggaagct atcacggcgg tgaattaaat gcacttcact tgccaaattt
     4921 gccaaataaa gtgcttcttc cacagcagta ttcccaccac cgactaccgc aaccggttta
     4981 ttgcgataga agaaaccatc acaagttgca caagccgaca cgcctttgcc tttgaaatgc
     5041 tcttcagaag gcaaacctaa atatttcgcc gacgcaccgg tggcaataat taacgcatca
     5101 caggtgaaag tgtataaatc tccgtttagc gtgaatgggc gtttagataa atccactgaa
     5161 tgaatatgat caaacacgat ttcagtttca aatttttcag cgtgcttgag cattttgttc
     5221 attaactctg tgccggtaat ttgttcaaat tcccccggcc agttctcgat ttcatcggtt
     5281 gtagtgagct gtccgccttg ttgcataccg gtgactaaaa ccgggtttag attggcacgg
     5341 gcggcataaa cagcagcggt ataaccggca ggccctgagc ctaaaattaa aagtttggtg
     5401 tgtttagtgg tcataatgaa tcctctgaat aaatattaat gtttatttta gcctaaattt
     5461 cagttcaact ctattttcgt tttcgctcaa cttttttcaa ttttgtgaca aagttaacag
     5521 aaatccgact gtgtttcttg taaattgtga cagtctaatt catttaaaag gggcaaaaag
     5581 atgaaaaaat taattaattc aatagaaacc gtcttagatg agcaactttc tggttttgtg
     5641 aaagcacatt ctgatttaac acttaacaca gaacctgtct atatttaccg cacaacgcca
     5701 agtaatcaac ctaaagtagc ccttatttcc ggtggtggga gtgggcacga gccaatgcac
     5761 gccggtttta tcggtaaagg aatgttagac ggagcttgcc ccggagcaat ctttacatct
     5821 ccaacgccgg atcaaatgtt tgaatgcggt ttagcggttg atcgtggcga gggtgtattg
     5881 ctaattatta aaaactatac cggtgatgtg ctgaattttg aaacagccac cgagctactt
     5941 gcagatagcg gtgtaaaagt cgcaaccgtg ttggttgatg atgatgtggc agtcaaagac
     6001 agtttatata ctgccggccg ccgcggtgtt gcaaatacag tattaattga aaagctgtta
     6061 ggagctgcag cggataaagg ctataactta tccgaattag ccaaattagg gcatcagtta
     6121 aacaataacg ggcattctat cggaattgcc ttatctgctt gtactgtgcc ggctgccggt
     6181 aagccatcat ttactttagc tgaaaatgag atggaatttg gggtaggtat tcacggagaa
     6241 ccgggcattg aacgtcgccc ctttgaaaat ctggatagta ccgtgaaaca aatgtttgag
     6301 accttaattg ctcacggcga ttatcaacgt aaaattcgcc attggaatac acaaacccaa
     6361 caatgggacg aaatcgaaga aagcaaagtg gcattgaaaa aaggtgatcg tgttattgct
     6421 ttagttaata acttaggagc agtgccacta tccgaacttt atgctgttta tgatgcgtta
     6481 gaaaaagagt gccaaacttt cggcttaagc attgaacgca gtcttgttgg atcatattgc
     6541 acctcgctgg acatgcaagg tatctctatc acattactga aagttgatga ggatattctc
     6601 aaactatggg atgctccggt aaatacaccg gcaatgcgtt ggggtgaata attagattga
     6661 aaggataagt tatgacaata tcaaaacaac agatcttaaa atggcttgaa aattgccaac
     6721 aggtaatgac tgaaaaacgg gattatttaa ccgaattgga taccgttatt ggcgatggcg
     6781 atcacggttt aaatatgcag cgtggattta gtaaagcact tgaaaaagcc cataccgtgc
     6841 aagataaaga tatcggcacc ctgcttaaaa ccgttggaat gacattatta tcgcaagtag
     6901 ggggagcgag cggccctctc tatggttcat tttttattaa agcggctcaa ggtgctacag
     6961 gcaaagagca actgagcttt aacgagttac tggcacttct acagcaagga gcagaagcta
     7021 tcgtacaacg tggacacgca caagttggcg ataaaacgat gtgtgattta tggctgccat
     7081 tactcgaaga cttagctcaa gccgatagca ctcaaccaat tgctcaaatc ttattacaag
     7141 cggtcgaaaa agcagaaaat tttgcaaatc aaaccgctcc attaatggcg aaaaaagggc
     7201 gtgccagtta cttgggcgaa cgcagtatcg ggcataaaga tccgggagca acgtccagct
     7261 actatatttt taaagcctta gctgaagcat tacagtagga ggggtaaatg gttaatttag
     7321 tgattgtttc acatagtgct aaactggcgg aaggcgtggg ggaaattttg gctcaaatgg
     7381 cacagggggg ctgtaaaatc gcccttgccg gcggcattga ggatacctca aatcctatcg
     7441 gcactgatgc ggtaaaaata atgcaagcga ttgaatcggt atttagccca gacggtgtga
     7501 ttgtgtttgt cgatttaggc agtgcaattt taagtaccca aaccgccata gatttactgg
     7561 agccggaact tgccgaaaaa gtgatcatta gctacgctcc tttagttgaa ggtgcttttg
     7621 ctgctgtagt tgcagcctct gccggcgata gtttagaagc ggtattaaat gaagcgaacg
     7681 aagccgctgc tcttaagcag gaacaagcca attagtaaaa atgccgtatc gaaaaatacg
     7741 gcattttagt tttattagta caatagtgaa taaagctgtc ttctaaattt cggcacaatc
     7801 gggtctgtac ccagtgcaga taagattgcc agaaattggc tttttacctc gccgttcgct
     7861 acatttaaat ccgattttaa ccaatcaaaa agtaacgtga gtgcttcttc atttttatga
     7921 gcttggtgta gctgatttgc caatttaatc gcaatttcag gggttttgct gttcgcataa
     7981 tccgcttgaa gctgttgtaa ttcgggcgat tcgctggctt gttccaataa ttcgatttgg
     8041 gcttgcaaac cgtgccaacg gctgtctctg tcttgaatcg ggatcgcttt aaggatttca
     8101 cgagcctctt ccacgctttt cattgcaatg taagtttcgg catagagcaa agcgaaatcg
     8161 ctgtttttct tatcggtcat ttcccacgct gatttcagca gcggcaaggc ttcggtataa
     8221 cgctgatctt gcaataattc caaggcttgt tgaaatttca gctcttcctc tttcggtaaa
     8281 atatttgcca accgaatccg taattcctgc tcacttactg caccttgaat tgcatcaatc
     8341 ggctgaccgc cggcaaacaa atagagcgtt ggaatttgtt gaatgcgaaa ttgagcagcc
     8401 aatgcttgtt gctcatcaca atttaccgtc gccaataaaa attggttagg gttttcatcc
     8461 gaaatacgac gtagtaaggc atccatttcc aatgaagcca cttcccttgg cgaaataaaa
     8521 tgaaacaccg tcggcacttg tgccgctgct gcccatactt cactaaaatt ctgctcgttt
     8581 acatttacaa agtagtccat acaaaacctt cttaagctaa aaattacttt ttatattgta
     8641 gcattaataa gaagtttcaa taggtagccc gtttctctcc cacgcttcaa aaccaccttt
     8701 tacactataa acattctcaa acccttgttc gattaaaaac tgtgctgtac tttggctact
     8761 cactccgtga tagcaaatca caaccaccgg ttcgtcataa tcgacctcgt ctaaaaactt
     8821 accataactc tggttggtta aatgaaacgc atcctgtggg tggctgtaaa cataacggcg
     8881 ggcatcacgc acatcggcaa gcaccgcacc ttcgttttcg attaattccc aagcctgttg
     8941 cgggctaatt tctttaaatg tagtttccat aatcactttc cctcaaaaaa cgtgcaacta
     9001 taccataaaa ttctaaaaag aatggctatt attccaagtt gaaaatttga tgtttgtcag
     9061 atataattgc aaactatttt caaatgcact gatttaaaac taccacagtt tgaggatttt
     9121 atggagcaat tatttcaatt tttagaacat catactgact ttgttatatt aggattacta
     9181 ggcttattaa gcgtaatctg cctttggaaa gctattgaac gtattatgtt ttattccaaa
     9241 gtagatattt caaaatacga taccctcgaa gaattagaca tcgatttaac ccacaattta
     9301 actaccattt cgactatcgg ctctaatgcc ccttatatcg gcttattagg aaccgttgtc
     9361 ggtattcttt taactttcta tcatttaggt caatcaggtg gtgatattga tgcggcctct
     9421 attatggtaa acctttcttt agctctaaaa gccactgctg tcggtatctt agtggcaatt
     9481 attgcaatgg ttttctacaa tggttttggt cgtaaagtgg aagaaaacaa actgaaatgg
     9541 ttggcattac aatcaaaaaa gcctcatcaa gcggtgtgat ttagtccatt ttttgcaaat
     9601 taataaggca gaacaatgaa aaaattcgat gaaatcaaca tcattccatt tattgatatt
     9661 atgttggtat tactggctat cgtgttagtt accgcctctt tcatttctca gggtaaaatc
     9721 caagtaaatg taccgaaagc aagtacaaca cagccaatga aagcagacga tttagcgaag
     9781 cttttaacca ttaccgaaaa taatgagttt ttctttaatg atcaagcaat aactaaagag
     9841 caattaattg ctgaagttgc cacttgggat aaaagccaaa aagtgtcact caaagttgat
     9901 ggtgcagtcg ccttcgaaaa atttgtggaa ttaaccgata tcctttctgc aaatgaaatt
     9961 aaaaatgtag caatcattac taaaaaagaa actgctccag caccttcaag cacacctggt
    10021 agccctgcac aagtgccagc agtcgcacct taaatagggt aaacaggtat gaaaaaaaaa
    10081 cattctcgta tcggcttatt ggcatctttg gctattcaca ctgccttaat tggtggcact
    10141 tttgcttggt tacataacca caaagtggaa aaaattgccg agcaaaactc tctttctatg
    10201 gaaatggtgg cagcattatt agagcaacct caggttgccg ttgctccgga tcctattacc
    10261 gaagaggtca aagaaatcga accggagaag gcagaagtac cacctgaacc taagcttact
    10321 ccggagccaa ctccagagcc ggaggcaatt ccagatccta cgctaaatcc gaaaaaggaa
    10381 aaaccgaaag aagaaaagcg taaagagcga caccaccata aacataagca tcgtcacaaa
    10441 gagaaaaggg aagagctaca agagcaagaa aaaccgaaag ataagcctaa agagcgcccg
    10501 aaacatcatc acaagcatat taaagcatta gagcgcgggc cagagataaa acaaggtatt
    10561 gtcgctaaag cgattccaaa tgcggctgaa ggtgaaaaag tggttgcggg ggttgttgga
    10621 gggcaaaaaa acggttcacc aaattcaacc tcaactacag gttcagcaaa tactggggct
    10681 agcagtggta atgccagtga acttgctgct tataaagtcg cattacagcg agcattacag
    10741 cgtaaggcga ataactctta ccctcagcgt gaaaaaatga tgcggaaaac cggtacagtt
    10801 acgattaaat ttaccattac atcgtccggt tcaattacaa atgtatccgt actcaattca
    10861 tcgggaaata gtaatttaga taacgctgcg gtacgcagtg cagaaggttt gagtatgcct
    10921 ccgccaccgg caggcttccc tcctacggta acagtaccgg taagatttgc ccttgaataa
    10981 aaacagccct caaaagcaat gtacttttga gggcttttta ttgcaaaaaa ttgactaaaa
    11041 atgaccgctt actgcttgcg aatatcgcca tttctcacat tcggactcac ttcacccgta
    11101 cgagtttctg tgcttaacga ggtagaattt actttcgtaa aagtataatc cgctttgctg
    11161 aattcacctg tttgattatt taagaagaaa ttgcggtact cttttaccca taatgccgtt
    11221 gcgccacaaa ctgccacagg cataactact aaattcacaa atggaatcat cgtgaatagg
    11281 ctcactaaag caccaaaggt aaaatttaaa gtgcgagact gcgacaacgc atttcgcata
    11341 cgctgaaaac tgattttatg gttatcaaac ggatagtcac aatattgaat ggcgatcaac
    11401 caagcaccga agataaaagt cagcacaggt gctacggttt gcccaaccac aggcaaaaag
    11461 cctaatacaa aaagagcaat cagccttgga atgctataca tcattttttg ccattctcgt
    11521 ttcagcattc gaggcacatc ttttaacatt gcaccgaatg acatatcgcc caaaggctcg
    11581 ccggtaagtt gcagttcgac tttttctgct aataacgcat taaagggagc agcaacaaag
    11641 ttagccaagg tagtaaaagc aaaataaaat cccactaata tcatcaaaaa aatcagtgga
    11701 atcagtacaa agctaagcca ttccagccag cttggcagta acatatccaa caagccaccg
    11761 atattggcaa aaaatcccca aatcagccct accatcagca cggtattaat aagaattggg
    11821 aaaatcacaa aaggcaaaaa ttgacgttgt aacaataacc gccagccata tataaaataa
    11881 tgaaagccta atccgacttg attttgcggc tcagaaaaaa ctgaagacat aatgattcct
    11941 tattttctat caaaattaat tagaaatatg gtaagctacg cacattattt tcgcaaatat
    12001 gaaaatacat tttttattga ttatttgata aagaggacac aatggaactg catattattt
    12061 tttttattct tgccgggcta ctgattgctg tactaattgg atttagcctt tggtccgctc
    12121 gtcgtgaaaa atcaaatatt ttttcaaata cattctcgac cagacctatt gctgtgccac
    12181 cacagaataa taaaatgagc aatagcatcc caacctcatt acagccacaa aatgaggatt
    12241 atcaagcaat gtctgtgccg gaagaaaatc cgcaacagat acaacaggaa gttgaaagct
    12301 cgctgcaaaa tatcaaaatc agtttgccgg gcggaaatcc tcagcaacag cctgagcaaa
    12361 ttcagccgat acaatcggta gcagaaccaa cggttagcac ttacggtcag aaaatttcta
    12421 atcagcaaca tatccaatac aatacgccgg attttgcaaa cccaatggtg aacacagtgg
    12481 tggaagaaac acctcaagca gtagctatcg aacctcaaga aacccaatcg gcagaggaag
    12541 aaaatccatt tgtaaccctc tatctttacg caccacaaaa tgaagctttc cgcggtgatt
    12601 ttgtagtaca ttatttagaa gaagttggct tacgttttgg cgaacaccaa attttccacc
    12661 gccatcaaca tattgatgat tcattaagtc cgattatttt cagtgcagca aatttaatga
    12721 acccaggaac ctttgattta aataatatct caaactttgc gacagctggt ttagtgctat
    12781 ttatgcaact tccaaccgaa ggcaatgatg tggctaatat gaagttgtta atcagtaacg
    12841 ctgaacactt agcagcatcg ttagggggat tcttatatga cgataatcaa cagccttttg
    12901 gcgaagaatc ccgccaacgt tatatgcaac gtgtgatgca ctaattgcga aaaaattaat
    12961 aaatccgacc gcttgtacaa gcggtctttt ttgtagagaa ttttaccaat gtctttattt
    13021 aaccaaacct ctttatttga agagaatgcc acgcccgagt tagtcgagaa aatcgaaact
    13081 attcgccaaa cattgcgtca atacgagtat gaatatcacg ttttagataa cccaagcgta
    13141 cccgatgccg aatacgaccg tttaatgaac gagctgaaaa atctggaatg gcagcacccg
    13201 gaactgatta gtgccgactc gccgactcaa cgggttggtg ccaaaccgct ggcaggcttt
    13261 gctcaagtca cccacgaaat ccctatgctt tcgttggata atgccttctc cgatgaagac
    13321 ttagatggct ttttacgccg tatggaaagc tatatcaccg cctctccttc gcaactggaa
    13381 ttttgttgcg aacctaaatt agacggcttg gcagtgagta ttttatacga aaacggtata
    13441 cttacccgag ctgcaacccg tggcgatggc acaaccggcg aagaaattac cgctaatatc
    13501 cgcaccattc gcaatattcc gttaaagctc aacacgacta atccacctgc tcgattagag
    13561 gtgcgaggcg aagtctttat gccacaatca ggctttaatg agctgaatga gaaagcctta
    13621 gctaaaggcg aaaaaacctt tgccaaccct cgcaatgccg cagcaggttc gcttcgccag
    13681 ttagatccga aaatcacccg ccagcgtccg ttagtgctga atgcctacgg aattggggtg
    13741 tatgaaagcg atgacgaact gccagccacc catttcgaac gtttgcaatg gctgaaatcg
    13801 cttggtattc ctgtaaataa tgaaatccgc ttggttcaag gcaaagctgc tctcttggct
    13861 tattatgcgg agattcaggc taaacgccca acattaggct atgatattga tggcacagta
    13921 ttgaaagtaa atgacattgc cctacaagag caactcgggt ttatctctcg ctcctctcgt
    13981 tgggcgattg cgtataaatt tccggctcaa gaagaaatga caatcctcaa agaagtggac
    14041 ttccaagtgg gaagaacagg ggcaatcacc cctgtggcga aattagagcc tgtttttgtc
    14101 gctggcgtaa cggtaagtaa cgcaacgcta cacaacggtg atgaaatcga gcgacttggt
    14161 attgtgattg gcgatacggt aattattcgc cgagcgggcg atgtaattcc gcaaattaca
    14221 ggcgtgatgt tagaacgccg cccggaaaat gcaaaaaaaa ttgaatttcc gaccgcttgt
    14281 cctatctgtc actccgctgt tactcgggta gaaggcgagg cagtagcacg ctgtaccggt
    14341 ggtttattct gcgaagctca acgtaaagaa gccttgaaac atttcgtttc acgcaaggca
    14401 atggatattg acggcgtagg cgaaaaacta atcgagcagt taatggctcg agagctgatt
    14461 gaaacgcctg ccgatctgtt taagctcgat cacactaccc taatgcgatt agagcgaatg
    14521 ggggaaaaat cggctcaaaa tgctctcaac agcatcgaaa aagcaaaaaa cactactctt
    14581 cctcgctttt tattctcgtt aggtattcgt gaagtgggcg aggcaaccgc tctcaactta
    14641 gccaaccatt ttggtagctt agaggcgatc cgccaagcca cttttgagca attaaaagaa
    14701 gtgcaagatg tgggcgaggt tgttgccaac cgtattgtca gcttctggca agaaccgcat
    14761 aatgtggaag tggtggaaga tttgatcgct caaggtgtac gttgggaaaa cgttgtgaaa
    14821 gccgaaattg tagataaccc gttaaaagat aaaaacgtgg tcttaaccgg cacgctaacc
    14881 cagctcaccc gtgatgaagc caaagcccta ttacaaagtt tgggctgtaa agtctccggc
    14941 tcggtttcca gcaaaaccga ttacttaatc gccggcgaaa aagccggttc caagctggca
    15001 aaagctcaag agttgggaat tcagatttta agcgagcaac aatttattga gcttactcaa
    15061 cattaacaaa caaaggggca gatgattgaa atctgcccct tattctatct attgaatgct
    15121 taaaagcatt aaccaatcaa tttaaactgc tgagctaaaa acagtaacgt aaagctagtt
    15181 aagtaaatta agccgataac tgccaaccaa aataaccagc cttttgcacg atgctcacct
    15241 tttagcacta aagagaaatt taaccacgca aaaacagggg tagaaacaaa tgatgaaatc
    15301 attgcaaatt gtaacatttt cgccacatca ctcataaatt ggctaataat taaaatgccg
    15361 atgagtgcag ttaccgtcat ccaaatactt aattctgttt gtgaatgttg cttacgcccg
    15421 ctaattaaac gcaacgcttc tgcattcgct cgtgaatatc catcaataac agtgatcgtt
    15481 gtgccgaaca tacacataaa tgcaataaat gcgattaaaa gcttagacca gtcaccaatc
    15541 gcaaaagcat acattttgat taattgagca atataggcaa caccggcttg ttctactttc
    15601 tcacctgaac cgtactgaac taacgcacct aatgctaaaa aaacaatcgc caaaattgcc
    15661 gtgccgatat aacccacatt aaaatcaaaa ataccgtcct cataattcac tttacttaaa
    15721 cgttttttcg caataaccca cattgagtta atggcagaaa tttcaattgg tgcaggcatc
    15781 cagcccatta atgcaacgat gaacacaagt gctgctaaat tccacggcga aggctctacg
    15841 aaatctggag caatttcaac gccacctttt aaagcagcaa tgatcacggc agataccgta
    15901 gagatggtta aagcaatcat aatccattta gataatgtat ctaagaattt atattgccct
    15961 agaagtaaaa taccccaagt gaccacaatc acaatagttc ctgccattgg aatgcttaaa
    16021 tctaacggaa tacctaaagc agaaaaaata aattttagaa tcgctgctga aacaatcgcc
    16081 accgcagctg tgttaatcat tgcagcaaaa acgttaagga taaagaaaat aataagataa
    16141 aactttcctt tttctttgta gccttccaat aaagttttac cgctagctaa ggtatattgc
    16201 acaccaaagc ggaaaaacgg atatttaaat aaattggcta acagaataat aatcgccagc
    16261 tgccagccat aaatcgcacc agattgtgta gaggcaataa tatgcgaacc acccactgcc
    16321 gcagatgcca tcaaaatccc cggccccatt gcagcaaatt tactttgcca agttgaatgt
    16381 tctatttgtt gtgtcatata gctttcctta tcacattact atcaaaacaa gatggtttca
    16441 ttctacttat aaaaaccaaa taaaaacac
//
LOCUS       DANLXB010000043        16129 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLXB010000043 DANLXB010000000
VERSION     DANLXB010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16129
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            110..2332
                     /gene="glgB"
                     /locus_tag="PXD41_000885"
     CDS             110..2332
                     /gene="glgB"
                     /locus_tag="PXD41_000885"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL6288434.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            2356..4368
                     /gene="glgX"
                     /locus_tag="PXD41_000886"
     CDS             2356..4368
                     /gene="glgX"
                     /locus_tag="PXD41_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL6288435.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            4361..5674
                     /gene="glgC"
                     /locus_tag="PXD41_000887"
     CDS             4361..5674
                     /gene="glgC"
                     /locus_tag="PXD41_000887"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL6288436.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            5797..7233
                     /gene="glgA"
                     /locus_tag="PXD41_000888"
     CDS             5797..7233
                     /gene="glgA"
                     /locus_tag="PXD41_000888"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL6288437.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            7328..9828
                     /locus_tag="PXD41_000889"
                     /pseudo
     CDS             7328..9828
                     /locus_tag="PXD41_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(9910..10626)
                     /gene="trmJ"
                     /locus_tag="PXD41_000890"
     CDS             complement(9910..10626)
                     /gene="trmJ"
                     /locus_tag="PXD41_000890"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL6288438.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            10806..12344
                     /gene="pntA"
                     /locus_tag="PXD41_000891"
     CDS             10806..12344
                     /gene="pntA"
                     /locus_tag="PXD41_000891"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL6288439.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            12359..13804
                     /gene="pntB"
                     /locus_tag="PXD41_000892"
     CDS             12359..13804
                     /gene="pntB"
                     /locus_tag="PXD41_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL6288440.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(13871..14797)
                     /locus_tag="PXD41_000893"
     CDS             complement(13871..14797)
                     /locus_tag="PXD41_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6288441.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(14907..16022)
                     /gene="asd"
                     /locus_tag="PXD41_000894"
     CDS             complement(14907..16022)
                     /gene="asd"
                     /locus_tag="PXD41_000894"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL6288442.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         4628 a         3115 c         3683 g         4703 t
ORIGIN      
        1 tgtgatttag ctcaaaaaat ggcgtaaatc cacttctttt atttctattt agtgatagag
       61 tgagaactat tgaaatttaa gtattaaacg ctttaagcaa ggagtgccga tgcaagacta
      121 tacttattct gaaaaagatg ctttttttgt tgagcgactt tcttcgggtt cttgtaatga
      181 tcctttctcc tacctaggta ttcaccctag caataacggc gttattatta gggtatttct
      241 tccttctgcc atagcttgcc aagtgatcga tttaaacgga aagcctgtgt catcaatgct
      301 aaaaattgat gatagaggct tttttattgc agagctgatt ggtaaaaaaa cagatttttc
      361 ttaccgcttg ttggtggaat accctgattc aacggtggat atagaagacc cttaccgttt
      421 taaaacccat attcaagagc ttgataattg gttgtttgcg gaaggaaaac aacttcgccc
      481 gtacgaaaaa ttaggcgcac atttagtcac acaaaatgaa gttgggggtg tgcattttag
      541 cgtctgggcg ccgaacgctc agcgggtttc cgtggttggg gatttcaacc actggaacgg
      601 cttggtacat tcaatgcgat tccaccccga ttccggtatt tgggatattt tcctgccgaa
      661 tgtgaaaaaa ggggagtgct ataaatttga agtgttggat cgaaacggcg tgctacggtt
      721 gaaatccgac ccttacgcct ttgcctccca attccgccca gaaaccgcat ctattgtttc
      781 cggcttgcca agcattgtgc cagccgagaa aacctgccgt aatgcgaatg ctcccgataa
      841 accgatttcc atttatgaag tgcatttagg ctcttggcga cgcaacattg aaaacaatta
      901 ttggcttagc tatgaagagc ttgccgatga actcattcct tatgtgaaag atatgggctt
      961 tacccatatt gaattgctgc ctatttccga atttccgttt gatggctctt ggggttatca
     1021 aaccaccggt atttattcgc caaccagccg ttttggtacg cctgagggct tgagttactt
     1081 tatccaaaaa gctcacgata aaggcattgg tgtgattctt gactgggtag tggggcattt
     1141 tccggtagat gaacacggct tggtttattt tgatggaacg catttatacg aacattccga
     1201 tccgaaagag ggctaccaca aagattggaa taccttaatt tttagctacg gcagaaatga
     1261 ggtgagcaat tatttgtctg gtaatgcact ttattggatt gagcgttttg ggattgatgc
     1321 gttgcgggtg gatgcggtgg cgtcaatgat ttatcgtgat tactcacgtt cagacggcga
     1381 gtggattcca aataaatatg gcggacgtga gaacttagag gcaatcgact tcttacgcca
     1441 caccaataat attttgagag acgaaagcca aggcggtgcg agcattgcag aggagtccac
     1501 ttcttttgcc ggagtgtctc actcaactga aagaggcggt ttgggcttta attataaatg
     1561 gaatatgggc tggatgaacg acactttacg ctatatgcaa aaagatccaa tttaccgccg
     1621 ttatcaccac aatttaatga cttttggtat gacctaccaa tacagcgaac agtttgtgtt
     1681 accgctttca cacgatgaag ttgttcacgg caaaggttca ttgctgaata aaatgccggg
     1741 ggattgctgg caaaaatttg cgaacttacg agcctattat ggctatatgt ggggctatcc
     1801 gggcaaaaaa ttgctcttta tgggcaacga gtttgctcaa ggtaaagagt ggaattttgc
     1861 cgagagctta gattggtatt tactcgggga agaagggggc gaatggcata agggcgtatt
     1921 gggttgggta aaagccctta accatttata cacccaaacc cctgcactgt ttgagcaaga
     1981 ttacaatcct gaaggttttg agtggttagt ggtggacgat cacgataatt cggtgtttgc
     2041 ttttgagcgt aaagccaaaa atggcgattc ggtgattgtg gtgagtaatt tcaccccgat
     2101 tgtgcgtgaa aattaccgtt ttggggtgaa tgaattggca gaatatcagg aaattctcaa
     2161 ttctgattta gcttgttatt gcggtagtaa tgtcagcaat gcaaaccgat ttgccagcga
     2221 gttaattgca tcgcacggta aagcctactc cttgagcatt actttgccac cgctatcgac
     2281 tatcttcctc aaaagagccg cagacaaaaa aacaaaacaa aacaaaacat aacttaaaga
     2341 aacataaaaa ataatatgca ctattttaga ggtaagcctt ttcctttagg caataaactt
     2401 gatagacaag cgggtgaatt tggcacaaat tttgccattg tttcgcaaaa tgcaaccgct
     2461 attgagttat gtctttttga tgaaaatcac cacgaaaccc gtattccgat gttttcttcc
     2521 ggagatactt ggcacatttt tgtagcaggt gtacaagcag ggacaaaata tggctacagg
     2581 gtgaaaggca tacaagatga acaagccggt ttgttattta atccgcaaaa attattgact
     2641 gatccttacg ctaaagcgat tgaagggaag ccggatttaa gtagtgcaga ggcagccgct
     2701 tggtataaat ggaacgatga acgggataat gcctctcttg cacctaagtc tatcgtgatt
     2761 gatgagcatt ttgattggga aaatgatagc cagttattca ctccttgggc agagactatt
     2821 atttatgaaa tgcaggtgaa aggttttagt cagcggaact ttcagattcc aagcgacatt
     2881 cgaggcactt ttgccggttt ggctcaccct gtttcgatag actatttaaa aaccttagga
     2941 atcaccgcag tagaacttct acccgttact taccatattg atgaaaccca tttgcagaaa
     3001 caagggcttg tgaattattg gggctataat gtattaggta attttgctat tgatccgaat
     3061 ttagcagcag ataagcaaaa tcctcttaaa gagtttaaac agctcgtaaa aacattacat
     3121 caagcacata tcgaagtgat tatggatatt gtgtttaacc acacagctga gagtgataaa
     3181 aacgggccga tgctaagttt tagaggcatt gacaatacag cttattggct agataaacag
     3241 ggcgaatacg aaaattggac tggctgtggt aataccttaa atttgagcaa tccttatata
     3301 ctctgctggg caatcgattg cttaatctat tgggtggagg agtgccatat tgatggattc
     3361 cgctttgatc ttgcctcaat tctaggtaga acaccgagtt tttctgaaaa agcagatttt
     3421 ttcacagcac ttaaaagcca ttctaaatta acacatatta agttgattgc tgagccttgg
     3481 gatattggtg tagaaggtta tcaattaggg caattccctg agccttttta tcagtggaat
     3541 gattgttatc gtgatgatat acgccgtttt tggttacaaa accaaggtga ttgggggctt
     3601 ttggcacggc gattggcagg aagtgatgat gtgtttacta aatattccgt ttcaaaaagt
     3661 atcaatttta ttacggcaca cgatgggttt acgttacaag atctcaccag ctatcagcaa
     3721 aaacataatt gggcaaatgg tgaacaaaac cgagacgggc ataatagtaa ctacagcaat
     3781 aaccacggtg ttgaagggca gacagcagat gaattggtaa aaaaacagag agaaatcacc
     3841 gcttgtagtt tgcttgctac gctcttttta tcggctggtg ttccaatgct tttagccggt
     3901 gatgaaatcg gacatagtca acaaggtaac aataatagtt attgccaaga taatgagatc
     3961 acttggctag attgggaaaa tatgaatcac acacggctgg attatgttcg tagtttaatc
     4021 cggttgcgta aaaaaatcgc tttgctttcc aagcagaata attggtggca agaggattcg
     4081 gtacaatggt tgaatccttc tgctcagcta atgaatattg acgattggca taatcaacat
     4141 aatgggcttg tcgttttatt acaggaagaa tggctgcttt tattcaatgc taatcgacaa
     4201 cctcaaccgt ttttactgcc acaaggcaac tggaaagttg tgttggagca ggctcaaggt
     4261 attttgatga cagacacgca agcggttacg ctcaataata tgggtgtatg cgtacttcaa
     4321 aaaagtgatg taatgttcgc taataaattg gagacacaat atgcttaacc aagaatcaac
     4381 ggctcttgtt gcaagacaag atttaaccaa cgatacctta gtattaattc ttgcaggagg
     4441 acgaggttct cgcctatacg aattaaccga taaacgtgca aaaccggcag tctatttcgg
     4501 tggtagccgc cgtattattg attttgcgtt atcaaattgt attaactcga atttattaaa
     4561 aatcggggtg attacccaat atgcagcaca ctctttgttg cgccatttac aacgtggttg
     4621 gtcattttta ccttatgaac gtaaccaata tattgatatg ttaccggcac gccaacagct
     4681 agatgaaaac acttggtatc gtggcacagc ggatgcggtg tatcaaaata tggcgatgat
     4741 gaaatcgcac tatagaccaa aatatgtggt gattttagca ggggatcata tctataaaat
     4801 ggactacact caaatgctga aagatcacgt cgatcaaggt gcaaaatgta ctgtaggttg
     4861 tatcgaagtg cctcgctcgc aagcaacaga gtttggggta atggcggtga atgaaaagct
     4921 gaaagtgaaa gagttcgtcg aaaaaccagc tgatccacct gcaatgccgg gaaaaccgga
     4981 ttcctcgcta gcatcaatgg ggatttatgt atttaatgca gattatctat atgaaatgct
     5041 ggaaaaagaa gcctctacac cgggaacctc acatgatttc ggtaaagata ttattccaaa
     5101 agcagtagag caaggtgtgc tatatgccca cccatttgaa cgttcttgta aagggcgtaa
     5161 tgccagtggg gcaatttact ggcgagatgt cggtacgatt gacagctact gggctgccca
     5221 tatggattta gtttctgaag atccggaatt agatttatat gatgaatctt ggccgattca
     5281 cggtcgtccg caacaaactg caccggcacg ttttttctat aatcgtgcgc gtgccagaac
     5341 cctagataac tcactgattg cgggtggttg tgtgattacc gatgcggaaa tcagtaattc
     5401 ggtcttattt aaccgtgttc acgttgaagc ggagtcggtg attgaacaca cagtgatttt
     5461 accgcaggtg actatcggta aaaattgcgt aattaagcgc gctgtgattg acagacattg
     5521 tgtaattcct gatggcttag aaattggtgt aaatgccgaa gaagatgcga aacgttttcg
     5581 tgtcagcaaa aatggcattg tattagtgac acagtcaatg ttagataaat tagcgggaaa
     5641 agaagctaat tcggatatta aatatacaat ttagtaagag atgatataat gcttcgagtt
     5701 tgtcatttga ggtcgcaagc tcgaagtatt gttatgatta aagcgcttca agcggtctta
     5761 tttttcaact attttacaca tagaaaacgg ttaaaaatga aagttttaca tatttgctct
     5821 gaaatgtacc ctttaattaa aacaggcggt ttagctgatg taatgggggc attgccattt
     5881 gcgcaacagc aagctggtaa tgatgtcaga gtgttaattc cttattaccc gaaagtcgcg
     5941 caaactttag gggaaacggt agaagttgct actatcggca cttttgccgg aacagtctct
     6001 gttcgatttg cttattttaa tggcttaggc gtttacgtta tcgatgcgcc tcatttattt
     6061 atgcgtgatg gtaaccctta ccacgacagc aattatcaag actatccgga taactataaa
     6121 cgctttgctt tattaggtta cattggggcg caattagccc aaggtttgga tcattggtgg
     6181 ggaaccgctc aagttttaca cgcacacgat tggcaagcag ggcttgcttg tgcatatctt
     6241 aaaagttggg gaagcaatgt aaaaacgctc ttcactattc ataatattgc ctatatcggg
     6301 cgctttaatg ccttccattt agcagagctt ggcttacctt gggaattttt ccacgccgaa
     6361 ggcttagaat tttacggtga aatttcttac ctcaaagcag gtttgtattt tgctgatcgc
     6421 attactaccg ttagcccgac ctatgctcgt gaaattactg aggaaattgc cggtgcaggc
     6481 ttgcatggtt tactggcaac ccgtcaatat caaggtagat tgcgtggcat tttaaacggg
     6541 gtcgatgctg aggtgtggaa tccggaaacg gatacacata ttgtggtgaa ttatcgtgcg
     6601 aactatatgc acggtaaagc caaaaataaa gcggaactcc aacgaatttt tggtttgcca
     6661 gaagacaaag aagcattatt gatggtaatg gtgactcgtt taactgagca gaagggggca
     6721 gatttcttac tcgccaatat agatacctta atgcaacata aggtacagat tattgtattg
     6781 ggaagtggat cgccagattt agaaaatgcg ctacgttatt tccaacacaa atacccgaac
     6841 caaattgggg tgaaaatcgg ttatgacgag gctttatcgc accaaattat tgcaggtggt
     6901 gatctgattc tagtaccaag ccgttttgag ccgtgcggat taactcaact ttatgggctg
     6961 aaatatggca ctttaccgct ggttcgccgt accggtggct tagctgatac ggtggtagat
     7021 agccataaag agagcattga aaaccgcagt gccaccggat ttgtatttga ttacccagat
     7081 gcacctgcgt ttttagaggc agctatgcgg gcaatcagct tatggcagaa acaaaaattg
     7141 tggtcgagcg ttcgccagaa tgcccttgct caagattttg gttgggcaaa agtggcagaa
     7201 cagtaccaaa atttatacca cgaaattatt taatttgtat tcacaacatc atttcaagcg
     7261 gtcgaatttg cggatttttt tgtaaaaacg accgcttgca atattaaaaa ttaggagaat
     7321 ttactcaatg agcaggcagt cattaagccc agaaatgatc aaaaatgtta aaaatgcgat
     7381 tttgcacaaa atggtgttcg ctttaggggt cgaaccccgt gatgccagta agcgtaactg
     7441 gctcaatgca accttacgtg tagtgcgtga tttatctacc gaagattggt tacaaacccg
     7501 ccgtagccag gttgcaaatg gtagccgccg tgtttattac ctttcaatgg aatttttaat
     7561 ggggcgtacg ttcagtaacg caatgatttc tgaaggtgtg tatgagctta ttggcgctgc
     7621 gttaaaagag ttagggcaag atctggaaga gattatcaat gaagagggcg tccgggctta
     7681 ggtaacggtg gcttagggcg tttagccgcc tgctatatgg acagccttgc cacaatgaaa
     7741 attccggcaa tcggctacgg tattcaatat gaatacggta tgttccgcca agaaatccgc
     7801 aacggggagc aaattgagca acctgatgaa tggttagaga atgaatttgt gtggccatat
     7861 ctacgttcaa gtaagcgttt cccggtacgc tttggcggta aaacttggcg tgagggcaaa
     7921 aaagtagtat ggcagccgga agaagaaatt accgctcaag ctcacgacca actgatcccg
     7981 ggctttgaga ccacctcaac taacagctta cgtttatggt ctgcacacgc atcgggtaga
     8041 gggtttggct tatctgattt taaccgtggc gattattttg cagcaatggt taaacaaaac
     8101 agctcggaaa acgtctctcg tgtgctttat ccggacgatt ctacctataa cggtcgtgaa
     8161 ttacgcttac gccaagagta tttcctttgc tcggcatctg tacaagatat tatccgccgc
     8221 cacgaagcgg agttcggctc ttgtgtgaat ttagccgaca aagtggcaac tcacttaaat
     8281 gacacacacc caacccttgc ggtgcctgag ttaatgcgta ttttaattga cgaaaaaggc
     8341 tatggctggg aacaagcgtg ggcgatgact cgtaaaattt tcttctacac caatcacact
     8401 ttgatgagtg aagcgttaga aacttggccg gtagaaatgt tagcccgtgt gctaccacgc
     8461 catttagaga ttattttcga cattaacgaa tatttcttag aggaagtgcg tagccaattc
     8521 ccggaagatc acgatttgat ttctcgtgtt tccttaattg atgaacaagg cgatcgccgt
     8581 gtgcgtatgg cgtggcttgc ggtagtcgcc tcagcgaaag taaatggtgt ggcgaaaatt
     8641 cactcggatt taatggttga atctattttt gccgattttg cccgtattta cccaaatcgt
     8701 tttactaatg tgactaatgg ggtgacacct cgccgctgga tcaaaattgc caacccaggg
     8761 cttgctaata ttttagataa atgtatcggc aataagtggc tgactgattt aagtgaattg
     8821 gaaaaattca acgtgtttgt tgatgatgct gatgtgcaag cacaggtggc agcggtgaaa
     8881 gtagaaaaca aacgtcgctt agccaaatat gtcgaagaaa ctcagggaat taaacttaat
     8941 cctgaagcga tttttgatgt acaagttaag cgtattcaca agtataaacg ccagcaaatg
     9001 aacgtgttgc atatcatcac gctttataac cgcatcttga aaaacccgac tgctgattgg
     9061 acacctcgtg tgtttatctt cgcagggaaa gcggcaagtg cttattatgc ggcgaaaaaa
     9121 gtgattcgtt tgattaatga tgtggcaaat gtggtgaata atgaccctcg cattaatgat
     9181 ttaattaagg tggtgtttat tccgaactac ggtgtttcat tagcacaaat gattattccg
     9241 gcagctgatg tttcagagca aatttcctta gcgggtacag aggcctccgg aacctctaat
     9301 atgaaatttg ccctcaatgg tgctttaacc attggtacat tagacggtgc gaatgtcgaa
     9361 attttagatc acgttggtaa agagaacatc tttattttcg gtaatgaagt agagcaggtg
     9421 gaagagcttc gccacaacgg ttactcaccg tatcactact acgaaaaaga cagcgaattg
     9481 aatgaggcaa tttcacaaat tctaaacggt aaattctcac cggaagatcc gtatcgctat
     9541 caagatttga tcttaaattc aggtgactac taccaagcct gtgccgatta tcgtagctat
     9601 gtggaggctc aagaaaaagt ggctcaagcc tatcgtaaca agaaagcttg gacacgttca
     9661 gccatcatca atattgccaa tatgggctat ttctcctcag accgctcggt gatggattat
     9721 gcgaaaaata tttggcatat cgaaccgatg agcgaagaac aattaaaagg cgattctaca
     9781 atgggcagta ttattgaaag ttcaaataaa ctgttgaatt taaaataatg atttagagaa
     9841 aacgagtaat cttaccgttt ttgttttagt cagggatttt gcaaatttct actaaaaatt
     9901 aaccgcttgt caatttgcct tctccaccgc cgtgagcatt cccctcagta aattcagctc
     9961 attagtttcc agttcggcac gttggtataa acggcggagt tttagcatca ctgaatcatt
    10021 gcggataaag cctaattcgg tatataagcg ttcggtgtga gcaaagaaat gctctaaggc
    10081 ttgagcggtt gggtaatcct tatctgctgc aagcggttgt ttttcgccag aattttgcaa
    10141 ataagccatt cggatttcat aacttgcgag ctgtactgcc attgccaaat tcagagaacc
    10201 ataatcagga ttggttggga aattcaaatg gtactggcat ttcaataatt cttcgttggt
    10261 tagccccact cgctcacgtc caaatacaat cgccactttg ccaagattgg ttcgatttac
    10321 cactaattca ccacagtctc ttggttcaat cagggtattt tgcaaatggc gaagtctggc
    10381 actggtgccg atcaccagtt ggcaatcggc aatggcttca tcgaaagtgg cgtagcattg
    10441 agcgttatcc aacacatctt ttgccccagc agcaagggct tcggcttgtt catcaagcgg
    10501 ttgttttggg gcgactaatc gcaaatgggt taagcccatc gttttcattg ctcgggctgc
    10561 ggaaccgata tttgccggga gtgaagtttc aacaagaatg atctgaattt ggttgagaat
    10621 ctgcattggt tttgtttctt ttttgttaaa tttagcctgt taatagtgta gcaaaaattt
    10681 agcctgctta aaatttgaaa aaatgggaaa taatcggttt aattgggcat aattttttac
    10741 ctatttgttt tatttagtgg tacatttaga gcgtttttaa tcacaacaac catacaggag
    10801 tctttatgct tattggtgta ccaagagagc tgttagacgg tgaaactcga gtggcggcaa
    10861 cgccaaaaac cgttgagcag atcaaaaaac ttggctttga cgtacttgtg gaacaagacg
    10921 caggttttaa agccagtttt gaagataata catttttaaa tgcaggtgca aatatcggca
    10981 cacaacaaga agtttggaat gcagacatta tttttaaagt gaatgcgccg acagaagctg
    11041 aaattgagtt aatcaaagaa ggggtaacct tagtcagctt tatttggccg gcacaaaatc
    11101 cacaattgat ggaaaaattg cagtctaaga aaattaatgt gttggcaatg gacgctgtgc
    11161 ctcgtatttc ccgtgcccaa gctctcgatg ctttaagttc gatggcaaat atttcgggtt
    11221 accgtgcggt gatcgaagcg gcaaacgctt ttggtagctt ctttactggg caaattaccg
    11281 cagcaggtaa agtaccaccg gcaaaagtgt tggtaattgg agccggtgtt gctggcttgg
    11341 ctgcaatcgg ggcggcaaat agcctggggg cgattgtgcg tgcctttgac tctcgtcctg
    11401 aagtaaaaga gcaagttaaa tcaatggggg ctgatttcct cgaaattgat tttgaagaag
    11461 aaggtggctc aggtgacggc tatgcgaaag tgatgtcgga agagtttaac cgtcgtgcaa
    11521 tggcgttata tgccgagcaa gccaaagagg tggatattat tattaccacc gctgccattc
    11581 cgggcaaacc tgctcctcgt ttaatcacta aagagatggt tgattcaatg aaaccgggtt
    11641 cagtgattgt tgatttagcc gctgcaaccg gtggtaactg tgaatacacc aaagccggcg
    11701 agattgtggt gaccgataat caagtgaaag tgattggcta taccgatttt cctgcacgtt
    11761 taccaacgca atcttcgcaa ctttatggta ctaacttggt gaatttactc aaactgttag
    11821 caccaaataa agatggtcaa attgagatta attttgatga tgtagtgttg cgtggcgtaa
    11881 cggtggtgcg tgacggcgaa ttaacttggc cggctccgcc gattcaagta tctgcccaac
    11941 tgcaaaaaca agcagccgca ccacaagcgg tcaaaaaaga ggaaaaacct gcagaccctc
    12001 gagtgaaata tggcgtgatg gcagcagcag gtgtgctgtt cctatggctt gcatctgtgg
    12061 ctccggcagc gtttttatcg cattttaccg tattcgttct cgcttgtgtg gtagggtatt
    12121 atgtggtttg gaacgtcagc cacgcactac ataccccatt aatggcggta acaaatgcga
    12181 tttcagggat tatcatcgta ggtgcggtat tacaaattgc ccaaccgacc ggtaatttct
    12241 ttattgatat tttggcattt attgcgattt tggttgccag catcaatatt tttggtggct
    12301 ttaaagtaac gcaacgtatg cttgcaatgt ttagaaaagg ttaaggagaa acgaaactat
    12361 gtcttttgga tttgtgactg ctgcgtacat tattgcagct attctcttta ttatgagctt
    12421 agccggtctt tctaaacacg aaaccgccaa agcaggttgt tggtatggga ttgtgggtat
    12481 ggcgattgct ttagtggcaa ccattttcgg cccgcaatca catggcacga tttggatctt
    12541 aatcgcaatg gcaatcggtg gattcatcgg ggtgaaaaaa gccctaaaag tagaaatgac
    12601 cgaaatgcct gaattagtgg caattctaca cagctttgtc ggtttagcag cggtattggt
    12661 tggttttaac agctacggac ttcataccaa tgcattaatg cctgcaaatt tagatgaaac
    12721 tgcacaagcg gcatttttag cggaacaagc cactcttgcc aatatccaca atgtggaagt
    12781 gttcttaggt attttcattg gtgcggtaac cttctccggt tcattggttg cctttggtaa
    12841 actaagcggt aaattatttg gtcgtaaagt ctcttctgca gcactgaata ttccacataa
    12901 acacaaatgg aatttggcag ccattatcgt ttctgttttt ttgatgatcg tgtttttaaa
    12961 taatccgcac aatatcttcc ctgtgctgat tatgacaatt attgcgttag tcttcggctg
    13021 gcacttagtt tcttctattg gtggggcgga tatgccggtg gtagtttcaa tgctgaattc
    13081 ttattcaggt tgggcagccg cagcggcagg ctttatgcta agcaacgatt tattaatcgt
    13141 aaccggtgca ttagtgggat catcaggtgc tatcctttct tatattatgt gtaaagcaat
    13201 gaaccgctca ttcattagcg tgattgccgg tggttttggc aatgaagttc agtctggcaa
    13261 aggtgatgaa gaatacggtg aacaccgtga aacgaaagcc gaagaagtgg cagaaatgct
    13321 gaaaaatgca agctctgtga tcatcacgcc gggttatggt atggcagtgg ctcaagcaca
    13381 atatccggta gcggaaatca ccgcaaaatt gcgtgaaaaa ggcgtgaatg tgcgttttgg
    13441 tattcaccct gtggcagggc gtttaccggg gcatatgaac gtattattgg cggaagcgaa
    13501 agtaccttat gatgtagtgc tggagatgga cgaaatcaat gacgattttg aagaaaccga
    13561 tgtggtattg gtaatcggtg caaacgatac cgtaaaccct gctgcattag acgacccatc
    13621 aagccctatt gctggaatgc cggtgcttga agtatggaaa gcacaaaatg ttatcgtgtt
    13681 caaacgttca atggcagtag gctacgccgg tgtgcaaaac ccactgttct ttaaagaaaa
    13741 tacccaaatg ctatttggtg atgcaaaaga acgtgttgat gatattttac gggcgttaaa
    13801 ttaaatttaa ataaaaaagc gaacataagt tcgctttttt gtgcttaggc taacataaat
    13861 tgttaatttt ttactctaat accatcaatc cgggaagagt cgcaaaactc tgcgatttta
    13921 cggtatcatg gaaatcatct aagtaggcta gggtagcatc ggcttctcga atagcgccat
    13981 aaagggtgct atatagtcct tgctgagtta tttttcttgc caccacatac cccctatcta
    14041 aatatggttt aaccgcccaa taaggtagtg cagcaatgcc tcgccgactt gctactagct
    14101 gaataatagc aatagttaac tcactattac gccgagtaac tttgatgcca gcagggccta
    14161 atatttttcg cagtaaatct agcatatcat caggtactgg ataggtaatt aatgtctcat
    14221 ctttaaaatc ttcagcttcc catacatctt ttgtggcaag agggtgatct ttagagcaaa
    14281 tagctaccat ttcatatgaa aagagaggtt tgtatataat accagcacta tcttcctctt
    14341 cagcgacaat tgccagatct gcacgatggc ttaatagcaa accaaccgta tcagtatgga
    14401 aacccgatac gatatctaat tcaactagag gccaatgttg acggaaagta tccattgccg
    14461 gcattagcca atcaaaacag gtatggcatt ctactgcaac acgtacctct ccgacttctc
    14521 cttgtttcac tcgggctaaa tctaattcag cctcaatgac tttgggcaaa atatcgtagg
    14581 ccaacttaat taaacgttcg ccagctggtg taaagcgaat aggggagctt tttcgctcaa
    14641 atagcgtaag atcatactgt tcttccagta attttatttg gtgtgaaagt gcggattgtg
    14701 ttaaatggac acgctttgct gcaagagata cgctaccgct ctcttttaat gcgattaatg
    14761 tccgcaaatg gcggatttca agaaaaatcg gtttcataat ttattcatct aaaagtgaaa
    14821 aaagatgaaa ataattataa caaacaagcg gtcaaattct gcaaaaaatt tgcaaaatcc
    14881 aaccgcttgt atagagcagt ggcgaattat tgggttaatt gaactaaaat gcggcgaaca
    14941 ggctctgctg caccccataa taattggtca cctacggtaa atgcagctaa gtattctcca
    15001 cccatcgcta atttacgcaa gcgaccaacc ggcacgctca atgtaccggt cactttcgcc
    15061 ggggtcaatt cacgcaatgt ggtttctttg tcgtttggaa ttactttcac ccattcattg
    15121 tgggcagcaa taatttgctc gatttccgct aacggaatat cttttttcag cttaattgtg
    15181 aatgcttggc tgtggcagcg taatgctcca atacgcacgc ataaaccatc aactggaatt
    15241 gggttatcgc ttaaacctaa aattttatta gtttctgcat aacctttcca ctcttcttta
    15301 gtttgcccgg tttccggtaa taatttatca atccaaggaa ttaagctacc gcccaatgcc
    15361 gcaccgaagt tctcggttgg gaagtcttcc gcacgcattt tagccgtaac tttacgttca
    15421 atatctaaaa tagaagaggc aggatttgct aattcagctt ttacgctatc ttctaattca
    15481 cccatttgag aaagcaattc acgcatattt ttcgcaccgg caccggaagc ggcttggtaa
    15541 gttgctacag aaacccactc gaccaaatct ttctcaaata aaccaccgat agccattagc
    15601 attaggctta cggtacagtt tccgcctaca aatgttttaa tgccgttttt taagccttct
    15661 gaaatcacat gttggttcac cgggtctaat acgataatag catcgtcttt catacgtaat
    15721 gcagaagccg cgtcaatcca atagccgttc caaccggttt cttttaattt tggatagact
    15781 tcatttgtat aatcaccacc ttggcaagtt acgataatgt ctaatttttt taattcttca
    15841 atgtcaaagg cgttttttaa ttcgccggca tcttttccgc caaaaacagg ggctttttga
    15901 cccgcttgtg aagtagtgaa aaaaacaggg ttgatattgg cgaagttatt ttcttcaacc
    15961 atacgatcca ttaagaccga accgaccata ccacgccaac cgataaaacc tacattttgc
    16021 attgtgtttg ctcctaaaaa tgatgttata aagattgtga ataaatacag gattttagtg
    16081 caaaaatcaa tgttttttat tgatttgcaa agttttgaca aaatttaac
//
LOCUS       DANLXB010000044        16070 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLXB010000044 DANLXB010000000
VERSION     DANLXB010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16070
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1576
                     /locus_tag="PXD41_000895"
     CDS             <1..1576
                     /locus_tag="PXD41_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL6288443.1"
                     /translation="NTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVR
                     ERQKFQALSKEIGRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKV
                     ESRRFYPLAEESSQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVEN
                     IRSEKQYDPQDVMLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANA
                     PSFNPNKRDSFKPELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVV
                     NGHTIKDVAPRDSLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLG
                     EQRGTNGDRKRWADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPV
                     IGERVLPEKTTRDVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTIHKLEKGKYVEKYI
                     AYTAGLAPASDPRFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTE
                     NTQSAVREIKLERPIN"
     gene            1585..3075
                     /gene="murE"
                     /locus_tag="PXD41_000896"
     CDS             1585..3075
                     /gene="murE"
                     /locus_tag="PXD41_000896"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL6288444.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            3163..4557
                     /gene="murF"
                     /locus_tag="PXD41_000897"
     CDS             3163..4557
                     /gene="murF"
                     /locus_tag="PXD41_000897"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL6288445.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            4578..5660
                     /gene="mraY"
                     /locus_tag="PXD41_000898"
     CDS             4578..5660
                     /gene="mraY"
                     /locus_tag="PXD41_000898"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL6288446.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            5724..7025
                     /gene="murD"
                     /locus_tag="PXD41_000899"
     CDS             5724..7025
                     /gene="murD"
                     /locus_tag="PXD41_000899"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL6288447.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            7025..8203
                     /gene="ftsW"
                     /locus_tag="PXD41_000900"
     CDS             7025..8203
                     /gene="ftsW"
                     /locus_tag="PXD41_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL6288448.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            8322..9377
                     /gene="murG"
                     /locus_tag="PXD41_000901"
     CDS             8322..9377
                     /gene="murG"
                     /locus_tag="PXD41_000901"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL6288449.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            9453..10880
                     /gene="murC"
                     /locus_tag="PXD41_000902"
     CDS             9453..10880
                     /gene="murC"
                     /locus_tag="PXD41_000902"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL6288450.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            10970..11881
                     /locus_tag="PXD41_000903"
     CDS             10970..11881
                     /locus_tag="PXD41_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL6288451.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            11881..12672
                     /locus_tag="PXD41_000904"
     CDS             11881..12672
                     /locus_tag="PXD41_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL6288452.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVIIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            12695..13966
                     /gene="ftsA"
                     /locus_tag="PXD41_000905"
     CDS             12695..13966
                     /gene="ftsA"
                     /locus_tag="PXD41_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL6288453.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            13999..15246
                     /gene="ftsZ"
                     /locus_tag="PXD41_000906"
     CDS             13999..15246
                     /gene="ftsZ"
                     /locus_tag="PXD41_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL6288454.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            15278..>16070
                     /gene="lpxC"
                     /locus_tag="PXD41_000907"
     CDS             15278..>16070
                     /gene="lpxC"
                     /locus_tag="PXD41_000907"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL6288455.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKS"
BASE COUNT         4780 a         3017 c         3760 g         4513 t
ORIGIN      
        1 aaatactaaa agtgaaggtt attggactca gcttgcccaa gttacaggtt tggattacaa
       61 cagtttaata gaaaaagtac ggaataaccc tagctcggtt tttttacgtt tagataacga
      121 aaatttagta agagaacgcc agaaattcca agcgttaagc aaagaaatcg gccgttccta
      181 taatgacata atggacgagc tttatagcaa aaaccgccag cgattccttt acttatcccg
      241 tcatcaatct gaagcgatca gcgaatatgc aaaagaacta gatattgatg cattagtgat
      301 taaagtcgaa tcacgccgtt tttacccgct ggcagaagaa tcttcacagt tgatcggttt
      361 tactgataaa gatgatatgc acggttcgga agggctggag cgtagttttg attccttact
      421 tatcggcaaa aacggtaaac aaattatccg aaaagatgcc aaaggcaata ttgtggaaaa
      481 tatccgttcg gagaaacagt acgatccgca agatgttatg ttaagcattg atgaagaatt
      541 gcagtctatg gtgtacggtg aaatcaaaaa agcggtacag gaaaataatg cggaatcagg
      601 cactgcggtt ttggttgatg tgcaaaccgg cgaaattttg gcaatggcaa atgccccttc
      661 attcaaccca aacaaacggg atagttttaa acctgaatta atgcgtaacc gtgctattac
      721 cgacactttt gaaccgggtt caacggtgaa accttttacc gtattaaccg cattacaaaa
      781 tggggtaact tatcgtgatg aagttattgg cactcgccca tttgtcgtca atggacatac
      841 aattaaagac gttgctccaa gggacagcct tacgcttacc ggcatcttgc aaaaatccag
      901 taacatcggg gtcagtaaat tagccctcag aatgccggca aatgcgttag tggatactta
      961 cacgaaagtc ggtttcggta aagacaccgg tttaggcttg ggtgaacaac gaggtacgaa
     1021 cggtgatcgc aaacgttggg cggatattga acgtgctacc ctttcctatg gatacggttt
     1081 aaatgtgacc ccattacaac ttgcccgtgc ttatgcgact ttaggaagtt tcgggctgta
     1141 tcgcccactt tcgattacca aggtcgatcc gccggtgatt ggcgaacggg tgctaccgga
     1201 aaaaaccacc cgagatgtcg tgcatatgat ggaaagcgtt gcggctaaag gcgaaggcgg
     1261 acaccgtgca gcggtggacg gctaccgtgt agccatcaaa accggtacaa tacacaaatt
     1321 agaaaaaggt aaatatgttg aaaaatatat tgcttatacc gcagggcttg ccccggcaag
     1381 cgatcctcgc tttgcattag tggtattaat caacgaacct aaagcaggca actattatgg
     1441 tggctttgtt tctgcaccac tgttctcacg cattatgggt tacaccttaa aacaacgtaa
     1501 tattaagccg gataacttaa cggaaaatac ccaaagtgcc gtgcgtgaaa ttaaattaga
     1561 acgccctatc aattaaggtt agctatgaaa cgtttactcc cttttctgac agaacttgat
     1621 gcttgggtgg aagaactcac cgagctaaaa caaatgacac ttgatagtcg ccaagttcaa
     1681 gccggtgatc tctttgttgc tttaaaagga catcaagtcg atggcagaaa atttattccg
     1741 aatgcgatag aacaaggagc agcaattatt ttggctgagg ctgatgaaga tcaaccggaa
     1801 attgagcttg atccgaaatt tgcaaaattt aacctagatc gcaccgcttg ttgcaaggtt
     1861 gtctctgttc cacgtctgcc aaaattgctc tctgaaattg caggagctct ttaccataac
     1921 ccgtcacaca agctgacttt agccggcatt accggcacga acggtaaaac gactactgct
     1981 caattattag cacaatggca taatttattg ggtgggaaat cggcagtaat gggtactatc
     2041 ggcaacggtt tgtacggaca agtgcaagaa gcggtaaata ccaccggctc tgccattgaa
     2101 attcagcata atcttgcgaa ctttgttgaa cttggagcgg atttttgtgc gatggaagtc
     2161 agctctcacg gtttggctca atttagagcc gaagccttgg attttgattt agcgatcttt
     2221 acgaatttaa gccgagatca ccttgattac cacaacacga tggaagagta tgcccaagcc
     2281 aaattccgtc tcttcaacga attaagcacc aaagctcaag taattaacgc cgatgatgaa
     2341 atcgggcgtg aatggctgac acaattacca aatgcagttg cggtaagcac cgatccgaag
     2401 tttgcaggca accaccaatt tgtcaaagcc actgcggtaa aatttaccct acaaggggca
     2461 agtattgcgt ttgaatcaag ttggggcaat ggcgagttac atagccgttt aatcggggct
     2521 ttcaatgtaa ataatctgct taccgccttt gccggacttt tagctcttgg ctttgatatt
     2581 caagaactgg ttaaaaccgc cccgaattta gttggcgtag caggtcgaat ggaatgcatt
     2641 accgctccaa ataagccaat ggtaattgtg gactatgctc acacccctga tgctcttgaa
     2701 aaagccctac aagcggctcg tttacattgc gaaggcgaac tttggtgcat tttcggctgt
     2761 ggtggagacc gtgacgccgg caaacgccca ttaatggcga cgattgccga gaaattaacc
     2821 gataaagtga ttgctacaga cgacaaccct cgcaccgaag ataatcaaaa gattatggca
     2881 gatattgtga aaggttttag taaaccccaa caaattatcc acaatcgtga agaggcaatt
     2941 aaaaccgcca ttgagcaagc taaagccaca gatgtgattc taatcgcagg caaaggtcac
     3001 gaagattatc agattattgg cacagagaag ttacattttt cggatcagga aacggcaagg
     3061 aaatatctgt tttaatgtca ctttctttgc acaagcaaag aaaagtgaca gtgacaaata
     3121 caaaatgctc gtaattaatt ttataaagaa aaagataaat caatgataaa actaaccacc
     3181 caacaaatcg ctgaaatcct aaatgccaaa ttgatcggca atggcgaaac tgtggtagaa
     3241 accaccagca ccgacacccg acaagcggtt gaaaacggct tattttttgc attaaagggc
     3301 gagaactttg atgctcatca ctatcttcaa aatgcagtcg cacaaggttg tgtagcggtt
     3361 gtggttgagc gtgagtgtga aattgatgta ccacaacttg tggtggcaga tacccgtttg
     3421 gcattggggg aattggcgaa atggttaaaa gctaagctga acccgaaaac ggtagcgatg
     3481 acaggttctt ccggcaaaac aaccgtcaaa gagatgacgg caaaaattct gcaaaaaatg
     3541 accgcttgcg aacaggaagt gctttatact tttggtaact taaacaatga cttaggtgta
     3601 ccgatgacct tgcttcgctt aaccgaacag cataaatatg cggtcattga gctgggggca
     3661 aatcatatcg gtgaaatcgc ttataccacc gctatcgctc agcctgatgc ctgcttggtg
     3721 aataatgtgg ctgcggcgca tttagagggg tttggttcat tagcaggcgt ggcacaagcc
     3781 aagggcgaaa tttatcgtgg cttgaaagaa aatggcaaag cgattgtcaa tttagctttt
     3841 tattatccgc aatggcaaaa agagattggc tcacgggaaa tgcaatcttt ctcttatatc
     3901 gggtcagatt cggattctta cgcagattac tgggcggaag atgtagaact gcatttaagc
     3961 ggttcacgct ttacgctaca taccccacag ggcgaaattg ctattgatct gccttatttg
     4021 ggcaaacata acgtgagcaa tgccttagcg gcaacttcgc tggcgatgtc tgttggggca
     4081 acgctagaag cagttaaggc agggcttgag cagcgttcaa tggtaaaagg gcgtttgtat
     4141 ccggtgcaaa ttaacgacca ctgtttgttt attgatgaca cttacaacgc caatgtggat
     4201 tcaatgaaat cggcgatttc tgttttggaa aattatccgg cttatcgtat ttttgcagtg
     4261 ggtgatatgg cggaattggg tgaagaaagt agcaaatgcc accaagaagt agcggatttt
     4321 gccaaaaatg cagcattaga tttaatcgtg agctttggaa aagaaagtgc ggtaatcagc
     4381 caacaggcag aacatcattt taccgataaa cagcaaatgg ttgatttcct actgccgatt
     4441 attttgcaaa aaatcgaaca aaaacaaccg cttgtattat tggcaaaagg ctctcgtagc
     4501 cagaaaatgg aaaccgtgat ttccgaattg tgtaaaccgt ttaacctaaa tttctaatta
     4561 tttttaagga ctaagcaatg ttagtttggc ttgcagaact attggttcaa tataacacag
     4621 cgtttaacgt tgtctcttat attactttcc gtgccattat ggcgttatta actgcaatgg
     4681 gaatcgggct ttggatcggg ccgaaagtaa ttcgccgttt gcagatctta aaatttggtc
     4741 aggaagtgcg taatgacgga ccggaaagcc atttcaaaaa acgtggtacg ccaacaatgg
     4801 gcggagtgat gattctcgca gcgattgggg tgagtacatt gctttgggca gatctgcgta
     4861 attcctatgt ttggttcacg ctgtttgtgc tatttggcta cggtgcagtg ggctttgttg
     4921 atgattatcg taagatctct cgtaaaaata ccgatggttt gattgcccgt tggaaatatt
     4981 tttggttatc tgctatcgca ttagtggcgg tgtttggtat gtatgcggtg ggtaaagata
     5041 ccgctgcaac acaattagtc gtgccgtttt ttaaagatgt gatgccgcaa ctcggtttat
     5101 tttatattgt gttatcctat ttcgtgattg tcggcaccag taatgcggta aacctaacgg
     5161 acggcttaga cgggcttgcg attgtgccaa ctattatggt cgcatctgcc tttgcgttaa
     5221 ttgcgtgggc aaccggtaac tttaattttg cacaatattt acatattcct tttattccaa
     5281 atgccggtga attggttatt ttatgtactg cgattgtggg agcaggttta gggttcttat
     5341 ggtataacac ctaccctgca caggtgttta tgggcgatgt tggctcactt tcgctcggcg
     5401 gtgcattagg cgtgattgca gtattagttc gccaagaatt attattggtg gtaatgggcg
     5461 gtgtatttgt ggttgaagcc ctctcggtga ttttacaagt aggttcatac aaattacgcc
     5521 aaaaacgtat tttccgaatg gctccaattc accaccattt tgaactcaaa ggctggtctg
     5581 aaccacgggt tatcgtgcgt ttctggatta tcacgctaat gctggtttta gtcggcttag
     5641 taacattgaa attacgttaa ttgattgaat aaggtgcatt gagataatgt accttatgtt
     5701 atttttaaat tacagaataa attatgcaaa aacaatacga aaacaaaacc gttactatta
     5761 tcggcttagg tacaacaggg ttatcttgtg tggatttctt taagaaaaaa aatgccaata
     5821 tccaagtgat tgacacccga gcaaacccag ccggagcgga taaattggac gtaactattc
     5881 cgttgcatac cggtgggtta aacagtgaat ggttgctgaa atctgatctt attgtaatta
     5941 gcccaggttt agccgttgcc acacctgaaa ttcagcaagc gattcaagct ggtgttgaaa
     6001 tagtcggtga tgttgaactg ttttgtcggg aagcgaaagc tccgattatt gcgatcaccg
     6061 gttcaaacgg caaaagtacc gtaacgactt taactaccga aatggcgaag caagcgggga
     6121 ttaaagtggg aatgggtggc aacatcggtg tgccggtatt aagtttgctg gagggcgatt
     6181 atgacctttt tgtgctggag ctatccagct tccagcttga gacaacttat tcactgaaag
     6241 caaaagctgc cactgtttta aatattagcg aagatcatat ggatcgctac gattcgattg
     6301 ccgactatcg ccaagcgaaa ttgcggattt acgataatgc ggaaaatatc atcgtaaacg
     6361 gtgaagatgc ccaaacttac ccgatacaag cggtcaaaaa agtgattcgt tttgcagaac
     6421 aaaatgcgga atatagccta cgcaatcaga tgctttattc aggcgatgat gcaattatcc
     6481 aaactaaaca gatgctgatt agcggccgtc ataatgagat gaatgcgtta gcggcgatgg
     6541 cattagcaga agcggcgaat gttcctcgtg aaggcattgt gaaagctttg caaatttatg
     6601 gtggtttgcc acaccgtttc caagcggtgg caaccaatga tggcgtgcgt tgggtcaatg
     6661 attccaaagc gaccaatgtg ggtagcacgg tagcggcatt aaacggcttg aatattgccg
     6721 gtacacttta tttactttta ggtggtgacg gcaaggctgc ggatttttcc gaactcaaac
     6781 cattaattaa taagccaaat attgtctgct attgtttcgg gcaagatgga gcggcattgg
     6841 cagaattaag cgaacaaagt gtgttggttg aaacgatgca gcaagcaatt gaagcaatcc
     6901 gcccacaact gaaaaaaggc gatatggtac tgctttctcc ggcttgtgcc agtttagatc
     6961 agtttaaaaa ctttgagcaa cgtggcgagg tatttatggc attagcacaa ggacagcacg
     7021 cataatgtta gaaagaatta agtcggaatg ggataaatgg gtcagattaa ccccttctaa
     7081 ttcactttat gacagaactc taatttggct atttttaggc ctgctaatta tcggttttgt
     7141 gatggtaaca tctgcttcac tcccagttag cacaaggttg aataacgatc cattttattt
     7201 tgcgattcga gacgggctgt atattattgc ttcaattatc ttttgttatg tttttgtaca
     7261 aatcccaatt gaaaaatggg aaaagcataa cttggcactg ttttttattt caatcggttt
     7321 tttaatcgcc gtactcattt tcggccgctc aattaatggt gcagtgcgtt ggattccgtt
     7381 gggtattctc aactttcagc cggcagaatt agccaaatta gcggtcattt gctattttgc
     7441 cagtttctat gtacgtaaat atgatgaaat tcgtaaagaa aaagccagtt tctggcgacc
     7501 ggcagtgatt ttattcttat tcggcttctt gctgattttg cagccggatt taggtagtac
     7561 ctttgtatta tttgttctca ctttctcaat gcttttcatt gtgggggcaa aaattatgca
     7621 atttatgttt ttaggcgtgg tgggaacggt gttatttgcg gtgttgattt taacctcgga
     7681 ataccgttta aaacgtgtta cctcctttat ggatccgttt gctgatgctt atggcgacgg
     7741 tttccagctc tcgaactcac aaatggcatt tggacaaggt gaattttggg gacaaggttt
     7801 aggtaattcg gtacaaaagc tagaatattt gccagaggca catactgact ttgtaatggc
     7861 ggttattggt gaagaatttg gtttctttgg tattgcttgc atcgtacttt tacttattct
     7921 attaacggtg agagccttaa aaatcagtaa agaatctttg gtgctggaag agcgttttaa
     7981 aggctatatg gcatttggga ttgcgatttg ggttttccta caaggcttcg taaacttagg
     8041 ggtggcatca ggtttgctgc caacgaaggg cttaaccttc ccattagtga gttatggtgg
     8101 ttcgagtttg gtaattatgt cgattgcgat tgcagttttg ctacgaattg accacgaaaa
     8161 ccgtgccgag cgaatcgggc acgcaaaaat taaaaccatc tagccgagcg gtctgcaacg
     8221 ttacaatttg caaaatttta caaaaatgag accgcttgta ttagctggaa agcataaaaa
     8281 ttcagtaaaa tagcacgttt tagaataaaa aagagttgaa aatggcgaag aaattattag
     8341 taatggcagg tggaacaggg gggcacgttt tccctgcaat tgccgtagct cgagagctac
     8401 aaaaacaagg ctggcaaatc cgctggctgg ggacgaaaga ccgaatggaa gccactcttg
     8461 tgccgaaaca cggtattgag attgatttta ttgaaatctc aggcttgcgg ggtaaaggcg
     8521 ttgcagcatt gttgaaagca ccgtttgcta tttttaaagc ggtgatgcaa gcccgcaaaa
     8581 tcattaaaaa ttatcagcct gatgcggtgt tgggaatggg cggttatgtg tccggtccgg
     8641 gcggtattgc ggctaaatta tgtggcgtgc cggtgatttt acacgagcaa aacgcagttg
     8701 ccggcctaac caatgtgtgg ctatccaaaa ttgcccgcaa ggtgttacag gctttcccta
     8761 ctgcttttaa agaggccgaa gtagtaggta atcctgtacg tgaagattta tctgctcttc
     8821 cgctgccgaa tgaacgtttc gccaaacgag gctacccgat taacatttta gtaatgggtg
     8881 gcagccaagg ggcaagagtg atcaaccaaa ccgtgccgga agtggcaaaa gtgttgggta
     8941 ataatgtgtt tatcagccac caagtcggta aaggtaattt agccggtatc gaagaagtct
     9001 atcaacaaac cggcaatggg attgcttccg agtttattga tgatatgaaa gccgcgtatg
     9061 agtgggcaga tttggtgatt tgtcgttccg gtgcgttaac ggtgtgtgaa attgccgccg
     9121 taggtctgcc cgctgtgttt gtgccgttcc aacataaaga caggcaacaa tttttaaacg
     9181 ctaactattt ggcggcagat ggagcagcag tgattatcga acagagcgat ttcactccaa
     9241 aggcattaca gcaagcctta gaacccttaa ttgccaatcg ccaactctta ttggatatgt
     9301 caatgcgagc cagagcaaaa tccaccccaa tggcagcaaa acgtgtagcg gaagtgatta
     9361 ttcaagaagc gaattaactt actacaagcg gtcgtttttg gtaaaaattt tgcaaaatgt
     9421 aaccgcttgc gaatagatta aaaggacaat aaatgaaaaa tttccaagat aaagtcaaaa
     9481 aattagtgcc tgaaatgcgt cgtgtcagcc aaattcattt tatcgggatt ggcggagccg
     9541 gtatgagcgg cattgcggaa gtgttattaa acgagggata ccaaatttca ggttcggata
     9601 ttgcagacag agcggttaca caacgtctat ccgcagccgg agcgaaagtc tttatcggac
     9661 accaagcaga aaatattgct ggggcgagtg tggtggtggt ttctactgcg attgatgaaa
     9721 ccaaccctga aattattgcc gctcgagaag ctcgaattcc ggtgattcgc cgagcagaaa
     9781 tgcttgccga aattatgcgt tttcgccacg gcattgcgat tgcaggcaca cacggtaaaa
     9841 ccactacaac cgcaatgatt tcaatgatct acaccgaagc aaaattagat ccgactttcg
     9901 tgaatggcgg tttggtaaaa tctaccggca aaaatgctca tttgggggcg agccgttatt
     9961 taattgccga agccgatgag agtgatgctt ctttcttgca cttgcagcca atggtgtcgg
    10021 tagtaaccaa cattgagcct gaccatatgg acacctatgg tggcgatttt gagaaaatga
    10081 aagagactta cgtacgattt ttgcgtaact tacctttcta cggcttagcg gtaatgtgtg
    10141 ccgatgatga aacggtaatg gaaattgctc ctcgtgtcgg cagacaagtg attacctatg
    10201 gctttagcga aaatgcggat taccgaattg aagattacca gcaaaccggc ttccaagagc
    10261 attacaccgt agtttgccca agcggtgaac gaattgatgt gctgttgaat gtgccgggta
    10321 tgcacaatgc cttaaatgca accgctgcgt tagcggtggc aaaagaagaa gggattggca
    10381 atgaggcgat tttagctgct ttagctgatt tccaaggggc aggacgccgc tttgaccaat
    10441 taggttcatt tattcgcccg aacggcaaaa ttatgttagt tgatgactac ggccaccacc
    10501 caactgaagt tgatgtaacc attcaagccg ctcgttcagg ctgggaaggt aaacgtgttg
    10561 tgatgatttt ccaaccgcac cgctattctc gtacccgtga tttattcgat gaatttgtac
    10621 aagtactgtc taaagtcgat gccttgattt tattggatgt gtatgctgcc ggcgaagctc
    10681 cgattgtggg ggcagacagt aaagccttag cccgttcaat ccgtaattta ggtaaggtcg
    10741 atccgatttt ggtttcagat accgatcaac ttggcgaggt attagatcaa attattcaag
    10801 acggtgattt aattttggca caaggtgcgg gcagtgtaag ccgcatttct cgtggcttgg
    10861 ctgagagctg gaaaaattaa atactctctc cccttgcggg agagagaccg aaaaatactt
    10921 cgttcagaag tatttttcag agagagggta tatatttaaa ggatttcaaa tgagtattaa
    10981 aaacgaaaaa attgccgtct tattcggtgg cgtttcgcaa gagcgtgaag tttcactgaa
    11041 ttctggtgca gcggtaacag ctgcattaaa aagtttaggc tataacgtag aaggcattga
    11101 tactaaagaa ttcccgattg aaaaattaaa agaaaaaggg attcagcgtg tatttaatat
    11161 tttacacggc ggtattggcg aaaatggcgt actgcaaggt gcgttagagc aaatgggtat
    11221 tccttacacc ggttgtggcg taatggcatc agcagtgacg ctggataaat tccggactaa
    11281 attattatgg aatgcagtag gtttaccaac agcggatatg gtggtggttc agcgtggaca
    11341 agcggtcgat tttgaccaaa ttattgcaaa attaggctta ccggtatttg tgaagtcttc
    11401 gtgtgaaggc tcaagtgtgg gtgtattcaa agtaaaaacc aaagaagaat tggcaccggc
    11461 aattcacgag gcattaaagt ttgattccat tgtgttggtg gaagaatttt tagccggtaa
    11521 tgaatattct gtaccggtat tagacggaca agttctaccg gcggtacaag taattccgga
    11581 cggcgaattt tatgactacc acgcaaaata tgtgtcggat aacacccaat atgtagtacc
    11641 ggcattaaat gacgaacgcc aagcagaggt cgccaaatta gtgaaagcgg cttacgatgt
    11701 ggttggctgt cgaggttgga gccgtattga tgtgatggaa gatggcgaag gaaaattccg
    11761 cttggttgaa gtaaatacca acccgggaat gaccagtcac agtattttcc caaaatcagc
    11821 agcaacagtt ggtatttcct ttgaaaaatt agttgaacgc gtattggagt taagtgctta
    11881 atgggcatct tccgcaagaa gaacagcaca aatgtgcgtt tgaatgttct taatccaaaa
    11941 acacctgttt ctccacgtaa atggctagta ttcattaagc cattaattgt gttattatgt
    12001 acactatttg tattcggtgt gtatagtaat tggcaaaata tactcgaaag ttgggataaa
    12061 acaccgattc gcgcttatgc attaacacat aaaacacaat ttacaacaaa tgcagatatt
    12121 cgtgaaactt tgtctaaaga acctgctcta aaaggatatt tcggacaaaa tattcaagag
    12181 gtcaaagata agcttttatc tataccttgg gttaaagatg tggctgttcg taaactttat
    12241 cccgaccgat taagtattac tttgctagaa cataaacccg ttgcaatttg gaatgatact
    12301 aactttgtct cagaacaagg aaccgtcttt agtttaccga aagacagaat cgataaaaat
    12361 ggacttccat tactctatgg tccagatacg gaaggaaaaa gtgtattaga ggcatggaat
    12421 aaaatccgag ctgatctaaa tgcccgcaac ttggatttaa cctccgtttc tgtagataat
    12481 cgaggttctt ggacaattag gctttctaat caagtagaat taagattagg aagaggggaa
    12541 tggacttcta aaattgatcg ttttgtaata atctttcctg aaattcatat acctgaaggt
    12601 aatagattag cttatgttga tttacgttat ccacatggcg cggcggttgg atttagtcct
    12661 ataaaaaatt aaactcagtg aacacaaaaa cattatgaca aaagcagtag aatcaaaaat
    12721 tatcgttggt cttgacattg ggacatcaaa ggttgttgcc gttgttggtg aagtattacc
    12781 tgatggtgta attaatgtta tgggagctgg cgtttgccct tctaaaggag tcgatcgagg
    12841 tggcgttatt gatcttgacg ctgccgttaa ttctattcaa agagccattg agcaggcgga
    12901 atctattgcc gattgtcaaa ttatgggtgt aacactggca atctcaggtc agcatattgt
    12961 tggtttaaat gaagcaggat catcaacatt atctggaggt attgttaccc aagataatat
    13021 tgaaagtgct gtggatatgg caaaggcaat taaattacaa gatggcttag aaacattaca
    13081 catgattcca caagaatatc acgtggatag attgcctgcg actaaaaatc caattggctt
    13141 atcgggtatg cgtttacaag ttcaagcaca cttaattgct tgccatcaag cttggttaaa
    13201 aaacttaaaa aatgcggttg aacatgctaa attaaaagtc gatcaagttg tattttcagg
    13261 tcttgcctct agctattctg ttttaactga agatgaaaaa gagctgggtg tttgcttaat
    13321 tgatattggt ggcggtacga tggatgtact agtttatacc gatggagcat taagatacag
    13381 taaagtcatt ccatttgcag gtaataacat tactgattat ttggctcgtg tatttacgac
    13441 atctcgccct gaagctgaaa gccttaaagt aggttatggt agcgcaattt cgcctccaac
    13501 ccataattca gataaaaaaa ttgaggtggc aggactaggt ggacggatgg caagaacctt
    13561 tacccgagct caggtggcaa cggttacctc acaatgttat aacgatttgc taaaagttgt
    13621 tgaagaggaa ttaacccaat tacgccatga acttttccaa aaaggaataa aacaagagtt
    13681 aattgccggt gtagtcatta ctggtggtgg ctcacaaatt gaagatattg tagaatgtgc
    13741 taaatcaatt tttggttcac aagttcgtgt tggatatcca ctcaatatta ctggcttaac
    13801 cgattatgtg aataaaccac aatatgcaac agcattaggg cttttacaat atagccacta
    13861 taattatact gaacaaggta caagtacaga ttctaatgaa gatatctttg ctcctattgg
    13921 tcgtggaacc aagaaaatca ttgacttctt caaatcaaaa ttttaatagt gttaaaataa
    13981 acacgcaggg agataaaaat gtttgaacct attattgaac aaacgcaaga tgctatcatt
    14041 aaggtagtgg gtgttggtgg cggtggcggt aatgccgtag acagaatgtc tcgctctgcc
    14101 gatgatatta aaggtgttga attctttgat gtaaatactg atgctcaagt tttaagaaaa
    14161 agaaccacac gccaaactat ccaaattgga gcaagtacaa ctaaaggttt aggtgcaggt
    14221 gctgatccaa tggtaggaaa acaagctgcc gaagaagatc gtgaggctat cgctaatgca
    14281 ttaaaaggtg caaatatgac ctttattgct gttggtatgg gtggaggtac cggtaccgga
    14341 gcagcccctg ttgttgctca aattgccaaa gagcaaggct cactaactgt aggcgttgta
    14401 acaaaacctt tccgcttcga agggcctcgc cgtatgcgct ttgcagacca aggcattaaa
    14461 gagctttctc aatatgttga ttctcttatt ataattccta atgataaatt acgtggttta
    14521 ggtaagcaaa caacagcagt agatgccttt gccgcagcaa atgatgtttt aagtaactgt
    14581 gtgcttggta ttaccaatat gattaccagt tcgggcggtt ctaccggtgc agatattaac
    14641 gtggacttcg cggatgttcg tacagtaatg tctggtaagg gacacgctat gattggtaca
    14701 ggttttgctg aaggtgaagt tggtgaagga cgagcggaaa aagcaatgaa tgatgccatt
    14761 tctagtccat tacttgaaaa tgtggatatt tcaggtgcaa gtggtatgct catcaacatt
    14821 agtgctggga cagatttctt attagaagaa gtttatgcta tgatggactt aatttatggc
    14881 tttgcaacag aagatgccgc aattgtattt ggttgtaact attaccctga aatggatgga
    14941 aaagtgagtg tcactcttgt cgcaacagga ataggccaac ctgaggaagc tctacatatg
    15001 ccacataagg ctcagccagt atatgcacag caaggaaatc atgttcaagc tacacagcct
    15061 actcagccaa accatgcggt acaacaacca aactttactc aaccgtcaag ttatggtcag
    15121 ccaaatcaat ttagtggtca accacaacca ctacaacaac ctgtggctcc aaaaccacaa
    15181 tcggttgata cagcacaaat ttttaaccca aattcaattc cgggttttat gagaaatagt
    15241 caataacttc cactcatttc ggaagtaagg acaaaatatg actaaacaaa gaacattaaa
    15301 acaagcagca aaagtaacag gtattggctt acatagcggc aaaaaagtaa ccttaacgtt
    15361 acgccctgcc ccagctaata caggagttat ttatgcccgt accgatttag agcctgtcgt
    15421 ttatttccct gcaagcgcag actctattcg tgatacacaa ttatgcacat gtatggtaaa
    15481 tgatgatggt gttcgtattt caacagtaga acatttaaac gcagcaatgt cagcattagg
    15541 cttagataat gttattgttg aagtagatgc acctgaaatt ccgattatgg acggtagttc
    15601 aagcccattt atctatcttt tattagatgc cggcatcgaa gaacaagatg caccgaagaa
    15661 atttattcgc attaaagaaa cagtacgcgt tgaagaaggc gataaatggg ccgaattaaa
    15721 accatacaat aaaggtttta aattgaactt cactattgac tttgagcacc cattaatccc
    15781 caaaaatgta gggagctatt ccattgattt ttctgctgag aactttattc agcaactaag
    15841 tcgagcgaga acctttacat ttatgaagga tgtagaatac ttgcaatcta ttggtcttgc
    15901 attaggtgga agccttgata atgctattgt attagatgat taccgaattc taaatgaaga
    15961 cggtttacga tttaaagatg aactggttcg ccataaaatg ctggattcga taggtgactt
    16021 atatatgtgt ggttataata tcctaggtga atttagtgca tataaatcag
//
LOCUS       DANLXB010000045        15942 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLXB010000045 DANLXB010000000
VERSION     DANLXB010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15942
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(67..1107)
                     /locus_tag="PXD41_000908"
     CDS             complement(67..1107)
                     /locus_tag="PXD41_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL6288456.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
     gene            complement(1116..2918)
                     /locus_tag="PXD41_000909"
     CDS             complement(1116..2918)
                     /locus_tag="PXD41_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL6288457.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            3068..3895
                     /locus_tag="PXD41_000910"
     CDS             3068..3895
                     /locus_tag="PXD41_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL6288458.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            3909..4937
                     /locus_tag="PXD41_000911"
     CDS             3909..4937
                     /locus_tag="PXD41_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL6288459.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            4947..5636
                     /locus_tag="PXD41_000912"
     CDS             4947..5636
                     /locus_tag="PXD41_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL6288460.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            5748..6263
                     /locus_tag="PXD41_000913"
     CDS             5748..6263
                     /locus_tag="PXD41_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL6288461.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            6260..6472
                     /locus_tag="PXD41_000914"
     CDS             6260..6472
                     /locus_tag="PXD41_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6288462.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            6478..6684
                     /locus_tag="PXD41_000915"
     CDS             6478..6684
                     /locus_tag="PXD41_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL6288463.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            6677..7243
                     /locus_tag="PXD41_000916"
     CDS             6677..7243
                     /locus_tag="PXD41_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6288464.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            7240..7695
                     /locus_tag="PXD41_000917"
     CDS             7240..7695
                     /locus_tag="PXD41_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288465.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            7844..8065
                     /locus_tag="PXD41_000918"
     CDS             7844..8065
                     /locus_tag="PXD41_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL6288466.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            8062..8547
                     /locus_tag="PXD41_000919"
     CDS             8062..8547
                     /locus_tag="PXD41_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288467.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            8540..8998
                     /locus_tag="PXD41_000920"
     CDS             8540..8998
                     /locus_tag="PXD41_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6288468.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(9049..9327)
                     /locus_tag="PXD41_000921"
     CDS             complement(9049..9327)
                     /locus_tag="PXD41_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288469.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            9366..12278
                     /locus_tag="PXD41_000922"
     CDS             9366..12278
                     /locus_tag="PXD41_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288470.1"
                     /translation="MSNNLKIQVVLSALDKLTAPFKSVVKQTEKLSQSLKVQRDELKA
                     LEKTQSKMQSFKKMDDSIKKSNETILKQTKHLDNLKNKISQMKNERIELKVKMDAKKR
                     EFQQITKGGSAWSARAAFLDKDFEKMQREYEKLGASISSVSRKRTEENRALKDSRHQQ
                     AKQLLYFRSLRRELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKAR
                     NEKYWATVEKVKNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNA
                     ILEVTEGSAEKAKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDT
                     GAAMGKPVMQAVEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKV
                     NKNNRKEIEQTLTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWI
                     KNKLQWVLDSLDKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARE
                     NKGLIATFVKWSAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALF
                     DSNDKFRLFNKSLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTK
                     VFWLNMLKGILGKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRA
                     FFGGFLQGLSKGLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKA
                     SSAGEKFGLALAGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEH
                     AKQITKTAEMSNNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGI
                     VHKGEYVMTKEATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTA
                     SQPSPTVAPVSQNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            12343..12519
                     /locus_tag="PXD41_000923"
     CDS             12343..12519
                     /locus_tag="PXD41_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288471.1"
                     /translation="MFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQK
                     SQELNEFQREVVYG"
     gene            12512..12799
                     /locus_tag="PXD41_000924"
     CDS             12512..12799
                     /locus_tag="PXD41_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288472.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP"
     gene            12928..13533
                     /locus_tag="PXD41_000925"
     CDS             12928..13533
                     /locus_tag="PXD41_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6288473.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            13533..13868
                     /locus_tag="PXD41_000926"
     CDS             13533..13868
                     /locus_tag="PXD41_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6288474.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            13865..14782
                     /locus_tag="PXD41_000927"
     CDS             13865..14782
                     /locus_tag="PXD41_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL6288475.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            14769..15401
                     /locus_tag="PXD41_000928"
     CDS             14769..15401
                     /locus_tag="PXD41_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL6288476.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            15404..>15942
                     /locus_tag="PXD41_000929"
     CDS             15404..>15942
                     /locus_tag="PXD41_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288477.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT         5072 a         3340 c         3549 g         3981 t
ORIGIN      
        1 cttttgcttt atatattaaa aaagccccaa tctaggagct gtattgtcag tttgtaaaga
       61 tctgttttat tgtgtccgct gtaacaattt agacggttta aatttgataa cctcttgacc
      121 taaccactga ttaaactctt tcaatcgctc ttgcaatggc tcaatctcgg tgataaaaaa
      181 cacctcggca gcatcagcca cgttgccaaa accgccggtg ttatttggga taatccccat
      241 cagttgtggt ggcacacggt gagcagctaa cacatcatca cggctcacgt tcttgatatt
      301 aaaaaactca tcttttgccg acacatcagc aatcggaata atctgtattc catctttctt
      361 gccgtttggt gcgtggacga acaagttttt aaaattcccc accccttttg actgcttgag
      421 ctgctggcga atattttcaa catcttcttg tttttgtgac gcatcgctca tataaaacac
      481 aaagccggcg tgagctccat ttaaaaaata cttacggcga aacagagtag cactctcatt
      541 taaccacgca gattgcaggg ccgaaagata ttgtggcaag ccgtaaatat cttgattaat
      601 atcaggctca agcaagtgat agattgagcc tttggcaaat tcgtgttctt ggtgatcgaa
      661 tcgttgtggc acatagtaaa attgaccagc ctctaaaccc tttcgcacat attttgccaa
      721 aggtgattcg attcgctgta cctgcccaag gcgatttcgc accacctcaa aataggcgtt
      781 gccaaatact aaataatctt taacaaacga tgacaaatca cggcgtgata aataacggct
      841 atcaacctcg caagtggaaa gcaaaatatt tgctttggtg atgatcgcac tttcgtggtg
      901 tgttgatgac cttaacgatt tcgccaagcc atcaaagctc atcggtgggt tataccattt
      961 ctcatacatc gccgaacact ccaaataatt gagaatatcg gcacggtcta acaccggaat
     1021 cgggtcacca aaactgaaaa tttcggtttg tgcttgcggt tgtaagcggt cattttgggt
     1081 taaatttttg cgcaattgtt ttttcatttt ttgtcctaat catctaaaaa atctactgtg
     1141 ccggtcgttt cttccagttt cccatcaaac ggctcattaa taaatacctg caagcaagcc
     1201 cacgcaaggt cggcgtggct tgcctcttcc gaacggtctg ccacataagt cacttgccgt
     1261 ccgctgttgg tgatctgttt tttaattgcc ataaaactcg caccaacctc aacagcgtgc
     1321 attgagtcaa attcaaatcg tcctttgctg ataatatcca agccttttag taccatcttg
     1381 gatttcagct ctacgttgta agtaagagcc accgcatctg gtcgttcttt tttgacgatt
     1441 tcataaacac cgacaccaag ccctgtggta tcaatcgcca gtctggtcac gttatatttt
     1501 gcacaaatag cgacaatttc tgccgcttgt tcggcaaaat cagccccttt aaaagtgcga
     1561 tactctaata gtcggaattt cccgccgtcc actttcggcg gagcgattac caccaacgcc
     1621 gagcggtcgc cggtgtaaga cgggtcatac ccaacccata cctctttatt gccgaatggg
     1681 cgttggtagc cgtccgtgaa tacataatct cgccacacct ccatcgagtc cacaaggcaa
     1741 cgttgcatca tcgtgaactt gaacacagac tggttatcat caataaactc acacataaag
     1801 agctgctcga actcatcggg cgagttttcc agtttgagtt gctcaatatc aaacaggtta
     1861 cagccacctg cctcggcatc gtagatattc acgatttgtc gccattggcc gtctccgcat
     1921 tttttgccgt ttttcaagtt ggcgtgagaa atatcaattt ccacctgttc cgctttcgga
     1981 cgtttgcggt taaacagctt gcccgaccaa agcagatagg cggaatgggt aatgctcgaa
     2041 ggggtagaaa aataagtaat ccgatattgt ttttggctcg ccatacccgc tgccactttg
     2101 cggatttcct caaagcggtt tacccaaaag atttcatcaa aatagagatt gccgtggtaa
     2161 gactgtgccg ttttcgagtt tgtacccaag aaaattagtt gagactcgtt cggcaaggta
     2221 atggtttcgc cttttagctc cacatcggca acccgtttgg cgtatgccac aatataggct
     2281 ctaaattgca atgcctgttt tttcgaggcg gaaataaaaa tctgatttct accggttact
     2341 aacgcatcaa ctaacgcctc gtgagcaaaa taataagtcg ctccaatttg acgactttta
     2401 agaatattgc ggattcgatg agtcagccca gcttcgtgcc attttttctg ataatggaac
     2461 attccgtcta aaaagccgtt tatcaacagt tcggcttgct cttcggaaat ggcattttgc
     2521 tcgggctttt tgcggtcgcc tttattacgg tttttaatat ttgggttgag gtcggcttca
     2581 ttacctccgc cgttagaata ttttttgatt cgtgctgtac tttccaacaa ccgacgtaaa
     2641 gcatccattt ctttgtagtc gttattgttt ttgctctctt tcataatcag caaattcagc
     2701 cgtgattcca gtgtggcttc cacacgtcca acggggctga tttcgtccca tttctctcgc
     2761 tttttccaac ttgcaatggt agagacggga atatttagct gacgagaaat ttcggtcacg
     2821 gtgtaacctg cccaatactt tgattgagcc tctcgtttat cgtgtagagg gttggcagcc
     2881 aacacctcgt attcagtgat tgtattttca ttttccatag gtgcgattat caaaaatcca
     2941 ccttgtttaa gcatttgctt gaggctgtga aacccgattt aacacgtacc acacattgaa
     3001 accgccggca caaaacaaga tcataaatcc gatttttacc cctccccttt agagcaagga
     3061 aaaacagatg acaacaaaat ccaaatggtt tgtggtagca acggaaggag caactacaga
     3121 tggacgcgaa attagtcgtg aatggctcac gcagattgaa gaaaattacg acccgaaaaa
     3181 taactatggt gctcgtatta accttgagca tttccgctgg cgttggtttg agaaagatga
     3241 cccgcattct tacagctatg gcgatgtgtt agcggttaaa acagaagaac gtgaagacgg
     3301 caaattacag ttactggcag aaatcgcccc aaccgaagcc ttagtgaagt tagtcaaaga
     3361 caagcagaaa gtttatacct ctgtggaaat tgaccttaat tttgcggaca caggcgaggc
     3421 gtatttagtt ggtttggcgg tgactgatac accggcaagc ctcggcacgg aatacctcac
     3481 attttgtgcc ggtgcaaccc ataacccact agcagaccgc aagcaaaagc cggaaaacct
     3541 tgtgagtgag gcagtagagg cgaatttaga atttactgct gaacctgaaa aaggtgcgtg
     3601 gctggagaaa tttaaggcga tgtttaccaa agccaaaacc gacaatgacg gcaaatttgc
     3661 cgaacacgaa aaggcaatgg aactgttagc tgagcaattt agcaaagttt cgacagaaaa
     3721 cgaccgcttg caaactgaac taagcacatt gcaaatcgaa tttaccgaat tgcaaaaaca
     3781 agcgggcgaa tttgccgaaa aatttgcaaa actggaacaa gaaccgtctg ccaattacac
     3841 cccacgccca aaagccactg gtgcgaaagc aggtgatgta caaaccgatt tttaattgag
     3901 gatcacgaat gaaagattta acccttgaaa aatataacgc ctaccttgca cgccaagctg
     3961 aattaaacaa cttgccgttt aatgcattgg caaccggcat taaattcaca gtgcaaccat
     4021 cggtacagca aaagctgtat gaaaaggtgc gtgaaagctc tgatttctta aaatctatca
     4081 gctttgtgtt tgttgatgag caaaccggtg aaaccttagg tttagattca gctcacaccg
     4141 tggccagcac caccgatacc agcggtgacg gtgaacgcaa aaccacctct attgcgaagt
     4201 tggtaaaaca aacctaccac tgccaacaaa tcaattttga cacccatatc aattataaac
     4261 agttggatat gtgggcgaaa ttccctgatt ttcagcaaaa agtggcgaat gttgcggcaa
     4321 aacaacgcaa acgtgactta attatgatcg gctttaacgg cacaagtcgt gcggcaacca
     4381 gtgatcgcaa cagcaacccg ttattgcaag atgtggcaaa aggctggttg cagaaaatgc
     4441 gtgaagatgc caaagagcgt gtaatgaatg gcgaaagcac agacaaccaa gttttagtcg
     4501 gcaaaggtca agagtatgcc aatcttgacg cactcgtaat ggacgccacc gaagaactta
     4561 ttgatgaatg gcatcgtgat gacaccgatt tagtggtgat taccggtcgc aagttgcttg
     4621 cggataaata tttcccgatt gtgaatcagc aaaacgcacc aaccgaagaa cttgccgctg
     4681 atattgtgat ctcacaaaaa cgcattgggg gcttaaaagc ggtgcgtgtg ccgttcttcc
     4741 cggcgaatgc gattttaatc actaagctgg aaaatttagc catctatgtg caagagggga
     4801 caacccgcaa gcatattgag aacgtgccga aaaaagaccg tattgaaacc tacgaatcag
     4861 aaaatatcga ctacgttgtc gaagattatg gctgtgcggc attaatcgaa aacattacac
     4921 tcaaagataa agagtaaggt ggaactatgc gaatgagtcc ggctcgggct cattttttgc
     4981 ggaaaaccgc agaaagtgag tctgcaaccc caaaccgaga aaaccttgaa ggcttacaag
     5041 gctatgactt agttttagcc caacttaaag cccatcaacg ccaattaaag aaaatccagt
     5101 cgattgagcg aaagattgag tttaaacgca acaattttga gcaataccga ccttgggtgg
     5161 aaggctccct tgccaaaggc tccggtgtgc aagacacggt tatcaccaca atgctgattt
     5221 ggtcgattga tattggcgat tacccaaccg cccttgcgat tgctcaatac gttttaatgc
     5281 acgatttggc aatgccggag cagtttgaac gcacaccggc aaccgccttg gttgaagagc
     5341 ttgcagaggc ggcaaagaaa gcccgagacc aaaaacagcc gtttgaggca gccgtgctga
     5401 aacaggcaaa cgacctcacc gctgaatttg atatgcccga cccagtgcga gccaaattac
     5461 tgcgtgagct aggcgagcta atccaagagg cagagccaca aaccgccctt gaacactatc
     5521 aaagagcgat agccctcgac cctcaatgcg gtgcaaaagg cttgcgagac aagttagaaa
     5581 agcaacttgc caaacaagcc gaagagccga aaccagcaga agaacagaat gagtaggcga
     5641 aagccgaaat agagcgtatc cacgccagcc aaggggcgga ttttaaaggg tgatttattc
     5701 attttgcacc cttttaaaat ccccacccct taccttacgg aaaccttatg gaacaacgca
     5761 atcacgttat tagtatcccg aaagtgaatg gctatgaatc cagcaaaaat gcgatcaagc
     5821 ccaccgcaga atctgatgaa actatcacca ataatggctt ttttccgaac attgagctac
     5881 tggaggtgcg aaatgcaatg cggattgatg gcacggtcat taatgagcgg ctaaaacaag
     5941 cggtgattga ggcaatggca acagtcaatg ccgacttaaa agcctatcgc ctcaatgcag
     6001 agcaagcaca aaaagcgaac ttgcaagcct gtgatgatga gcaaatcaac ggcgaaagcg
     6061 tgctggttta caaatataaa cgagcggtct attgccttgc agtagcgaac ctttacgaac
     6121 gctaccgcag ttatgacagc accaaagacg gccacgacaa agccgaagag ctagaaagta
     6181 ccgccggtga tttgaaacga gattaccact ttgccgtgcg tgatattttg ggcgaaaacc
     6241 gaatgattag tgaattgata tgaacacctt gattgcacgc caagacgaca ccttagacga
     6301 gctgatcttt cggcactacg ggcaaacggc aggcttagtc gagcaagcct tagaatataa
     6361 ccccgaactg gctcatttgc cacgtttgcc gatcggcact gtagttacaa tgccggatat
     6421 tgagagccgt tttgcaacgg tggcgaaatc cagcgtgcaa ctttgggatt aaaaaatatg
     6481 cacaaaactg aacaagcctc ctattttggg gcaatttttg gcttttttgg tagcctcacc
     6541 ctatctgatt ggggggtggt agtgagtatt ctggtagcta ttttaacctt attacttaat
     6601 tgggcatacc gagccaaaga atacaaactg aaagagcgag aatttgagct aaagctacaa
     6661 aaccaaggga aaaagaatga gtaaaagtgt aaaagttggc gtatttgtct gctccgttgc
     6721 agctattatc gggacggtaa agcaatatta cagctccgaa atccgcacca gcgaaacagg
     6781 cttagccatt atcggcaatg cggagggttg cagacgtgat ccgtataaat gccctgccga
     6841 tgtaatcacg gttggcattg gctcaaccga ggcaagcggt gagaaaatta atgtcaatca
     6901 caaatacacc gataaagaga ttgccgagcg ttggataaaa gatcttaaaa tagctgaaag
     6961 gtgtatcaat cgttatttta atggcgacaa aatgaacgaa aatcagtttt cggcgatggt
     7021 atcagcagca tttaatatgg gatgttacaa ccttagattt tatccaaatg aaaatggtaa
     7081 atacattcag acaacaatcc ataaatatgc tatggctaag gattttaaag cgatgtgtaa
     7141 taggatacct gattttaacc gctcgggagg taaagtgcta agaggtttga aaatccgccg
     7201 agaaaaagaa aaagccctgt gtctcgggca ggaggttaaa tgattgtcaa actctgccaa
     7261 atgaccaata agcatttcag cccgctaatg attgtgctgg tgctagttgg cgtattagcc
     7321 aatttcgtgc agtttcgcca aaacgaaagc ctgaaagcag acttacaggc acgcaccacg
     7381 caaaaccaac tgattcaagc cgataaccgc aatttagcca atcagcttga aaacagccaa
     7441 atacagcttg aggcgtatca aaaacaggtg gacgacctca atcagaaagt gttagccaaa
     7501 atgaaacaag cggagcaacg aagtaatgaa atccttaacg aactggaaaa gcataaaaag
     7561 tgggctgatt ctgccgtgcc tcctagcgtt ggcaagctgc tcaaccaacg aaagcgtgcg
     7621 gtatcacacc ctcaaatcga acccgataat ctgtccgaaa aggctggagt gccaaacacc
     7681 ggcaaccgag attaacacca acggtgatct tgtcaaagca ctagacaaaa gactcaacac
     7741 cattgaggta tgccaagtca tcatcgaatc gttcgagcat tgcatcgagc aatacaacaa
     7801 aatcaaccaa ggcgagtgat cgcctttttt aataaggacg actatgtcag accaaatcga
     7861 ccgagccaac gaattagccg aaaaagccag agaggcggca cttgcaaaaa ttctgcaaaa
     7921 tcagaccgct tgcaccagcc tttttgagtg tgaggattgc ggagagccaa tccccgaaaa
     7981 acgccgagaa atggttattg gttgcacccg ttgcattgag tgccaaacca tttacgagca
     8041 taagcaaaaa ggctaccgca gatgattaaa cctgatcgct tgcgagccgt gctcacacaa
     8101 accattgata tattccaagc taaccccgaa aagctgattt tgcaatatga caaaggcaaa
     8161 attaaaagca aagggagcca aagccattcg tttgaatacc actacgattt agagctaatc
     8221 gtggtggatt ttccgtatca ccccgacgtg ttgtttgtgc cagtgctaaa ttttgtgcga
     8281 aatgaacaat gggagctact gcaaaacccg gaactacaag acaaaatcga atttgaaatc
     8341 gaccacaaca atcacgagag ctacgatatt tatatccgcc tcccgcttac cgagcgggtg
     8401 atcgtgaaag agcaagacgg acacctaact gcaacccacg ccgatgaacc gaaccttgcc
     8461 gatgtttcgc catttacccg tttaaccgaa tatgaggttt acctcaaaga cgagctgatt
     8521 tatcagtggg cagagccaaa tgagtgaacc gatcgaacaa gtaaaaaccg cctttgatag
     8581 cttactgaat aatatcagca aacctcgcag acggttgatg tatcaacaaa tcgggcgaga
     8641 gcttgcccga agccaacgca gacggattaa agcacaacaa aacccagacg gctcggcata
     8701 cgagccacgc aaaaagccga agaaaggggt aaaaagcaaa attaaatcgg gcaagatgtt
     8761 tgacaaaatt acccagccac gttttatgcg gctacgcctt gaaagcgaag gtgtcagctt
     8821 aggttatgag ggtggtgatg cggtcatcgc ccgaatccac caacaaggct taatcggacg
     8881 agtgcggaaa gattgggatt taaaagtgaa atatgccagc cgtgagttgc taggttttac
     8941 tgatgacgat ctgcagatga ttgaggatta tatgattaat attttggctg gtagctaaat
     9001 gatgaataga aacttttgca aaaaagcggt caattttgac cgcttgagtt attgattaac
     9061 gctttgtcta tctgaatgat accaacaaag aaaccctaaa atagctgaaa aaatcaatgc
     9121 tatcaaaata aaagtattga gtggtaacaa tacataaagt gagatcagaa taacgataat
     9181 agagagccca accatatttg ccaataatga aagcaggctt aaaaatactg ttgtaactac
     9241 accaaaaatg gcagcaaagg ttgtaaaacc tattgccaat aatgcaccga aaccaattaa
     9301 cccaagtaag ataaataaga tttccataga ttttccctta gccatactac aattaaggtt
     9361 ataatatgag caataattta aaaattcaag tagttctttc tgcgttagat aaattaaccg
     9421 caccatttaa gagtgtggta aaacagacgg agaaattatc tcaatcttta aaagtacaga
     9481 gagatgaatt aaaagcattg gaaaaaacac aaagtaaaat gcaatcattt aaaaaaatgg
     9541 acgatagcat taagaaatcc aatgaaacta tactcaaaca gacaaagcat ttagataatc
     9601 tcaaaaataa aatcagccaa atgaaaaatg aacgaattga gctgaaagtg aaaatggatg
     9661 cgaaaaaaag ggaatttcaa caaattacga aaggtggttc agcttggagt gcaagagccg
     9721 catttttaga taaagatttt gaaaaaatgc aaagagaata tgaaaaactc ggtgcatcta
     9781 tttcaagtgt cagccgaaaa agaacagaag aaaatcgggc attaaaggat tctcgccatc
     9841 aacaagctaa gcaactttta tattttcgta gtttaagacg tgaattgaga gcaagcggca
     9901 ttaatattaa agcttttgct caaagcgaaa ccaacttaac agacaagatt gcaaaagcaa
     9961 atcaattaat cgaccaacaa aaagcaaaat tagaaaaact aaatgcggtt aaagctcgaa
    10021 atgaaaaata ttgggcaact gtcgaaaagg taaaaaatac cagcgaacgt ttgcataatt
    10081 taggacaacg ctcaatgatt agtggtgcgg caatttctgc ccctgttgtt gggctaggga
    10141 aaggggttgt cggaatggct caaacagcgg gtaaatttga acaatttaat gctattttag
    10201 aggtaaccga gggaagtgct gaaaaagcca agcaaagttt tgattgggtt aaacaatttg
    10261 cagtagatac cccctcaaac cttgatgaag caatggaagc ctttgtaaag ttaagagcat
    10321 acggtcttga tcctaccaat ggcttactac aaacattagg tgatacaggt gctgcaatgg
    10381 gtaagcctgt aatgcaagca gttgaggcaa tagcagatgc tttaacgggt gagaatgaac
    10441 gcttaaaaga atttggtatt aaaggaagtg tagttaaagg tacaaatatt attgagtatg
    10501 cctacactga taaattaggc aaacaacaag tcgcaaaagt aaacaaaaat aaccgaaaag
    10561 aaattgagca aaccctaacc cgtattttta acgaaaaata tgctggagca atggaaaaac
    10621 aagctaaaac gctagttggt atttgggcaa aaattgaaga ttattggaca aatttccaaa
    10681 tgcaagtgat ggaatcggga gcatttgact ggattaaaaa taaattgcaa tgggtgttag
    10741 acagtttaga taaaatggct gaaaatggcg agttgcaaaa atgggctgaa gatgtcggag
    10801 ccgttattca agaaacagta caaggcttat gggcttttgg tgaaaaaatt attgaagtgg
    10861 ttaaatggtt agcgagcttg gcacgggaga ataaagggct aattgcaaca ttcgttaaat
    10921 ggtctgctat tcttggctct agtttaacgg tgctaggagc ttttgcagtg gtggcaagtt
    10981 ttgcattata tcctgtagca agattggctc ttggtatcgg caaatttaca ggtgcaagca
    11041 ccttattaaa taaggcatta tttgatagta atgataaatt ccgattattc aataaatcac
    11101 tttattcatc aggcactacg gctgcttttg ttaaatcaaa atttaatcag ttagcaactt
    11161 taccaaatgt gctgggaagt agttttaata aattaggcgg tggcatcaaa atgctaattc
    11221 cacagcttaa aacaaaagta ttttggctca atatgctaaa aggtatttta ggcaagttgt
    11281 ggagtgcaat ccgttttatt ttctcaccgt tgaaattatt acttggtatt ttctcgccga
    11341 ttggcttagc gattacagct atttcggtag caggggtagc gttatataga aattgggaga
    11401 aggtcagagc cttttttgga ggctttttgc aaggattatc taaaggtctt gcaccagtat
    11461 tagagagatt taaaccttta ggaaaactat ttgaaactat atcaaactgg gttaaatcta
    11521 cgtttaagtg gttatccgat ttattaaccc cagcggataa aacatcggaa agtttagata
    11581 aagcgagttc tgcaggagaa aaattcgggc ttgcattggc tggtgcaata gacttggtaa
    11641 catcacctgt tcagtggcta gtcgatcagt ttaagtggat ttctgaaaat atgccgagtt
    11701 gggacactat tggtgagggt gtaaaaaagg cagctactgc aattgttccc accgagcacg
    11761 ccaagcagat tactaaaacg gcagaaatgt caaacaatat gtatgacccc aattatactc
    11821 caccacaact tgagcaaaaa tggattggtg gcttggttgg taacggtaaa ggaagaggtt
    11881 ttgccacagg cggctacacc ggcaatggtg gcaaatatga gcctgccggt attgtgcata
    11941 agggcgagta tgtaatgacc aaagaggcaa ctgcacgctt gggtgtggca aatcttaacc
    12001 ggttaaatta tggcaaagtt gctgggctaa ctgcacttgc gtcaagtgtt gcgtttgctc
    12061 aaccaatgcc tgcggtcaaa atcgacagca gaccaccgct gacggcaagc caaccaagcc
    12121 caacagttgc accggtgtcg caaaatatcc atatcaccat caacgccacc ggtgggcaag
    12181 acccacaagc aatcgcccga ctggttgcaa tggagttgga aaaacaacaa cgccaagcac
    12241 aagcaagagc aagatcgtct ttgagagaca ggggctaatt tgacaaagta gaatgaaaag
    12301 cggacaatgc tctaaattgt ccgcttttta taggagcaaa tgatgtttaa agaaaaagga
    12361 tatgatgaat ttgtgaatga atgtgtgcga aaaggtagag aagaacacaa agctggttta
    12421 ggatttacgc tagagcaatc tcgcttacat atcaaaaaaa ccattgagca aaaatcacaa
    12481 gagctaaacg aatttcagcg tgaagtggtt tatggctaaa attaccatta aaccacaagc
    12541 attgagtcaa tttgacgaga ttgtaaaaag tgttatcgaa tttaccggtt ttgaaacgag
    12601 tggtattcga ttacaaagtg atatttttga caaaatagag caaattgcat ttatgccact
    12661 ctctggaaga gcaagagaag atgggacaag agaaactttc gtcagacgtt atcgtattgt
    12721 gtacgattac gataggcagg cagatgaagt aattatctta gctatcattc acagtagccg
    12781 actttaccca cgcccataat cagtaagcga cctaatcggt cgctttttct ttgcctgtta
    12841 aaacccattt cacacctcgc atttataccc aaagcctttc gccttttgca aaatatcctc
    12901 attttttaac cgcttgtaat tgtaaaaatg agtgagccaa accacgccga acaaatccgc
    12961 cgtttagaca atattatccg acttggcact attgccgagg tggatttaac cacagcgact
    13021 gcacgggtca attcgggcgg tattacgacc gatttcttac cgtggctgac ttttcgtgcc
    13081 ggtacatcgc aaacgtggtc agctccaaca gttggcgagc aatgcgtggt gttaagcgtg
    13141 agtggtgaat ttaccacagg cgtgatctta tttgggattt acacccaaaa cgccccgagc
    13201 caatccgccg atgagcatct attccgcttt tcggacggtg cagaaatcag ctacaacacc
    13261 gcaagcggtc aattaaccgt aaaaaattgc aaagtggtga ttgtgcaggc gacagaatct
    13321 atcacgctcg acacgcccac ggttaaggcc acaaaaaatg tcgtgattgg gggcaaccta
    13381 tccgtgaaag gcacaacctc atcgcaaggt gcaatcagca cacaaggggc ggtaacagca
    13441 aaaggcgatg tatcaggggc gggaatcagt ttaggcagcc accatcacat tgagcaaggt
    13501 gacggcagac caactagcgg agcaaaacca taatgaaccg agaaacaggc gaacagcttg
    13561 aagacgaagt agagcatatc aagcagtcta tcaaagatat tttgctgacg gcaaaaggca
    13621 gtcgggtaat gcggcgaacc tatggcagta atctctacaa gctaactgat aaaccgattg
    13681 ccgcaagtct gattatgcaa ctctccgctg cgtgcgtgat ggcgttgcag caatgggagc
    13741 cacgtatagc gatcacccga tttaaagtgg aatttgccga agataactac aataagctga
    13801 tttgcacctt agattttacc cttaagcacc gaaaaatcag catcaaagga atgcgtttta
    13861 cactatgagc gaaattgtcg atttatccaa actccccgcc ccgaaagtac tggaagaatt
    13921 ggactatgaa accttactgg cagagcggaa agccaagttt ttatccctct acccagaaag
    13981 cgaacgagcg gtaatggctg cacggttagc gttggagtct gagcctatca ccaagttact
    14041 acaagaaaat tgctatttgc agctactcga acgccaacgc attaatagtg cggctcaagc
    14101 cacaatgctt gcttatgcta ccggtacgga tttagatgtc atcgcagcca actttaatgt
    14161 tgagcggctt gtagtgcaag ctgaagactt aactgcaagc ccgcctatcg tcgaagagtt
    14221 agagcctgat gatgatttcc gtcagcgtgt gcagttaaaa attgaaagtg tttcggttgc
    14281 cggtccacgg aaggcttaca cctttcacgc cctgtctgct aacggaaaaa ttgccgatgt
    14341 gtccgtcata tcaccacagc cagcttatgt aacggtaacg ctgctttctc gtgatggcaa
    14401 cggagccgta gcctcagaaa tcatcaatgc ggccaaaatt gctctcaatg atgaagaggt
    14461 tagaccgatt gccgatagag taaccgtgca aggggcaagc attgtggaat atgaaattaa
    14521 tgcggtgttg catctctacc gtggacctga gaaagagcct attttaaaag cggcaaaagc
    14581 taacttagag gcttacatca accaaacaaa acgcattgga cgagatgtga ctcactcagg
    14641 tatccacgcc gccttgcacg ttgccggtgt gcaaaatgtg gaaattttgc agccgagaac
    14701 tgatttggtg ctgacacctt accaagccgg ttattgtgtc aattacacgc taaatgttga
    14761 ggtgagcgat gaatacagtt aaagcattat tgccacccgg ttcatcactt ttggaaaaac
    14821 gagctgccga atgtttgcaa caagcggtac aaaatccgat taaatttgca aatttgatta
    14881 atccacacaa atgccccgtg aaatttttgc cctatcttgc gtgggcctta tcggtggatt
    14941 attgggaaga gcattggagt gaagaattaa aaagagaaac cattattcga tcttttgaag
    15001 aacaccgaaa gaaaggcaca gcaagtgcag tgcgaagaat tgtggaatct ctcggctatg
    15061 cttttgaaat ccgtgagtgg tttgcggaaa aacggcaacg gcagcccggg acgtttaggg
    15121 tttttgttga gttaaaagat aaagggatta gcgaaaaaat ctaccaagaa ttagaaaggt
    15181 tgattgaaga tgcaaaaccg gtatcaaggc acatcacaga attagcagta tcagccacct
    15241 caaaaggcaa agcaaatatt tttagtggag cacacagtgg cgaaattatt acgatttatc
    15301 cacctaaaaa gctccctgtt attgtcatta aaagcaaaat ggatttattt agtgcaacaa
    15361 acagtggcga aattattacg atttatccta ataagaggta aaaatggaac aaaaatataa
    15421 aacaatatta acccatcacg gtgagcgagt gatcgttgag gctcttgcaa ataagatacc
    15481 agtgccactt aaggaaatgg ctataggaga tggtaacggg tcatcaataa ctccaagtgc
    15541 atctcaaacc acacttgtaa gagaagttta tcgtgcggaa attacagatt tgctagaaga
    15601 cccgcaaaat cgccatcaga tgattgctga attactaatc ccagaaaatg taggtggatt
    15661 tattgtccga gaaatagggt tatttgatga acaaggtggt ttggttgctg tagcaaattg
    15721 ccctgaaaat tataagcctg tattagaaca aggcagtggt aaagtccaat attaccgaat
    15781 gattttacaa gttagtagta gtgatgcggt caccttatcg attaacaata atattgttta
    15841 cgccacaaga actgagttta acgaatttgt aaataacttg agtagtcctg atggctataa
    15901 acacatcgga cgctgcaaat ctgtagcaga actccgcact at
//
LOCUS       DANLXB010000046        15816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLXB010000046 DANLXB010000000
VERSION     DANLXB010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            15..1046
                     /locus_tag="PXD41_000930"
     CDS             15..1046
                     /locus_tag="PXD41_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6288478.1"
                     /translation="MNIKATLRKARLVIGKAILDSKNTDLILSEIPNKILFLRHDGKI
                     GDYVVSSFVFREIKKQSPQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGG
                     KQLAKEQYDVVIDPTVTLRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSE
                     IYQDALALIGFENIETQYDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSE
                     QKINELLSCLKQHSDKPIVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRF
                     ADLLISPDTATVHIASGLSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDF
                     AAIKPEWLK"
     gene            1048..1938
                     /gene="ilvY"
                     /locus_tag="PXD41_000931"
     CDS             1048..1938
                     /gene="ilvY"
                     /locus_tag="PXD41_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL6288479.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2072..4474)
                     /gene="lon"
                     /locus_tag="PXD41_000932"
     CDS             complement(2072..4474)
                     /gene="lon"
                     /locus_tag="PXD41_000932"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL6288480.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      4678..4796
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4972..6069
                     /gene="ribD"
                     /locus_tag="PXD41_000933"
     CDS             4972..6069
                     /gene="ribD"
                     /locus_tag="PXD41_000933"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL6288481.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6286..6933
                     /gene="ribE"
                     /locus_tag="PXD41_000934"
     CDS             6286..6933
                     /gene="ribE"
                     /locus_tag="PXD41_000934"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL6288482.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            6952..8151
                     /locus_tag="PXD41_000935"
     CDS             6952..8151
                     /locus_tag="PXD41_000935"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL6288483.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8357..8821
                     /locus_tag="PXD41_000936"
     CDS             8357..8821
                     /locus_tag="PXD41_000936"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL6288484.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(8867..10375)
                     /gene="lnt"
                     /locus_tag="PXD41_000937"
     CDS             complement(8867..10375)
                     /gene="lnt"
                     /locus_tag="PXD41_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL6288485.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10434..11333)
                     /gene="corC"
                     /locus_tag="PXD41_000938"
     CDS             complement(10434..11333)
                     /gene="corC"
                     /locus_tag="PXD41_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL6288486.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11471..12079
                     /locus_tag="PXD41_000939"
     CDS             11471..12079
                     /locus_tag="PXD41_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL6288487.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12160..12543)
                     /locus_tag="PXD41_000940"
     CDS             complement(12160..12543)
                     /locus_tag="PXD41_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288488.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12573..13142)
                     /locus_tag="PXD41_000941"
     CDS             complement(12573..13142)
                     /locus_tag="PXD41_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL6288489.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            13201..14046
                     /gene="nfo"
                     /locus_tag="PXD41_000942"
     CDS             13201..14046
                     /gene="nfo"
                     /locus_tag="PXD41_000942"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL6288490.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14174..14746
                     /locus_tag="PXD41_000943"
     CDS             14174..14746
                     /locus_tag="PXD41_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6288491.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(14813..15271)
                     /locus_tag="PXD41_000944"
     CDS             complement(14813..15271)
                     /locus_tag="PXD41_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6288492.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15445..>15816)
                     /gene="grcA"
                     /locus_tag="PXD41_000945"
     CDS             complement(15445..>15816)
                     /gene="grcA"
                     /locus_tag="PXD41_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL6288493.1"
                     /translation="VQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVAISE
                     LGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGYAVR
                     FNSLTPEQQRDVITRTFTESL"
BASE COUNT         4705 a         3085 c         3341 g         4685 t
ORIGIN      
        1 tatagtaagt aaaaatgaat attaaagcaa cgttaagaaa agcaagattg gtgataggta
       61 aagccatttt agatagtaaa aatactgatc tgatattatc ggaaattccc aataaaattc
      121 tatttcttcg tcacgatggt aaaattggtg attatgtcgt tagttccttt gtcttccgtg
      181 aaataaaaaa acagtctccc caaacgcaaa taggcgtggt ttgctcacag aaaaaccgat
      241 atttatttga gaataatcct tatattgata agctctattt ggttaagaca aaaagtattc
      301 ctgattatat tcgtggtggc aaacaacttg caaaagagca gtatgatgtt gtaatcgatc
      361 cgactgttac tttacggaat cgtgatctct tatttttacg cactatatca gccaaacatt
      421 atgtaggtta tcagaaacaa aaatatcgat tatttgatct aaatgtagag gatagaaaac
      481 agcatttttc agagatttat caagatgcgt tagctttaat cgggtttgaa aatatagaaa
      541 ctcagtatga tgtgccacta aatgccacaa gcaaccaatc cataaagcat tatttatatg
      601 aaaaccaaat tagaaattat attgcgttaa atctttttgg tgcaggttcg gcaagacgtt
      661 ttagtgagca gaaaattaat gaactgctga gttgcttaaa acagcatagt gataaaccga
      721 tagtcttact tacttttcct gaagtaacgg caaaattgtg ttcctttact aagaagtata
      781 aaaatatatt tgtctatgag aaaaccaaaa gcgtttttga ttcaatagaa ctgattcgtt
      841 ttgcggactt attaatttca cctgatactg caaccgtgca tattgcctca ggcttgagta
      901 aaaagataat tgctttttac agtagcgatg aacagaattt tatacattgg catccgaata
      961 atcaggctga aacccatatt ctccgtttta gaaaaagcgt gaatgattta gattttgctg
     1021 caataaaacc ggagtggcta aaataatatg gacttccaaa gccttaaact tttcctagat
     1081 atagcccaaa gccgtagttt tattcgcagt gcggagaaga attatatgac ggcttccaca
     1141 cttacccgcc atattcagcg tatagaggag gagctcgggc agccgttgtt tctgcgtgat
     1201 aatcgacaag tgcgtttaac tgaagcaggg gaaaggtttt tggcgtttgc tcaacaaggt
     1261 tgggcagagt ggcagcagtt gcaaaaccag ttgtcgcctg ctcaaggtga tttagaagga
     1321 gagttgaaag tgttctgctc ggtaacggct tcttacagcc atttaccgcc gattttggga
     1381 aagtttcgcc aaaaatatcc gaaagtggat attaaactga gtaccggtga tccggctttg
     1441 gcattggaac aggttcagtc attggctgca gatatttcgg ttgcgggtaa gccggaattt
     1501 ctgccgaata atattgtgtt tcactatatt gatgatattc aactttcgat tattgcccct
     1561 cgtgtggcga gccaagccac tcaatttctg caacagtcgc cgatagattg gaaaaatatc
     1621 ccctttattt tgccggtgaa cggacctgta cgaaaacgga ttgaccgttg gtttaaagag
     1681 caaaaaatca aagacccgat tatttatgct accgtctccg gacacgaagc gattgtgccg
     1741 atggttgcac taggctttgg ggtcgcactg ctaccggata ttgtgattaa gcatagccca
     1801 atgaataatc aagtttctta tgtgaattta ccctcgccga tcactccgtt tgagctggga
     1861 atttgcgttc agcaaaaacg cttgcaagag ccgatcatca acgcattttg gcaattattg
     1921 tctgataatt cagcataaca agcggttaga ttttgctaaa tttttgcaaa aaatagagca
     1981 aaaccgaccg cttgtagata aaactttcag ataaaaaata aggtgcgtga ttgtgatctg
     2041 cgcaccttat gttgttttag attattgcac tttattgcac tgtggcttta gctcgcgatt
     2101 ttttcacctt gatctcggct tttgacaaga tttcaatccc cattggcggg ttttctagtg
     2161 ccagagctag tacctcgtca atggtttcta ctgcgtgaat gtccaacgct gcttttgcat
     2221 tttccggaat ttcctctaag tctttttcat tttctttcgg aataatcacc gtcgtaatac
     2281 caccacgatg ggctgccagt aatttctctt ttaagccgcc gattggcaat actttgccac
     2341 gcaagctgat ttcaccggtc atcgctactt ctttacgcac agggttacct gttaggctgg
     2401 aaattaatgc agtacacatt gcaatccctg cactcggacc atctttcggt gttgcaccgt
     2461 ccggcacgtg aacgtgaata tcccgttttt cgtggaagtc ttcagcaatg cctaattttt
     2521 ctgcacgaga gcgtacaacc accattgccg cttgaataga ctctttcatt acatcgccta
     2581 atgaaccggt gtaagagaat ttgcctttac ctgcaacaga agcggtttca atggttaata
     2641 aatcaccgcc aacttctgtc cacgctaaac cggtcacttc gccaatgcgg ttttggctat
     2701 ccattttgcc gtagtcaaaa cgttttacgc ctaagtattc ttcgatattt ttctcagaaa
     2761 ctgtaatgga ttttaatttc ttatccaata ctaaagcttt cacggcttta cggcagattt
     2821 tcgcaatttc acgctcaagg ctacgcacgc ctgcttcacg ggtgtagtag cggataatac
     2881 ttaaaattgc actgtcttca atggtcagct caccctcttt tagtccgtta ttttcttgct
     2941 gtttagccag taaatgacca cgagcaatgt gcattttctc atcttcggta tagcctgaaa
     3001 gacgaatcac ttccatacgg tcgagcaatg ctggcggaat gttcattgag tttgaggttg
     3061 ccacaaacat tacatcggat aaatcgtaat ccacctctaa ataatggtcg ttaaaggctt
     3121 tattttgctc aggatctaac acttcaagca gagcagaagc cgggtcgcca cgcatatctt
     3181 gagccatttt gtcgatttca tctaacaaga acagcggatt acgcacgccg actttcgcca
     3241 ttttcatcat taggctaccc ggcattgagc cgatgtaagt acggcgatgc ccacggattt
     3301 ccgcttcatc acgcacgcca cctaacgcca tacgcacata tttacgccct gtggcattgg
     3361 caatagattg ccctaatgag gttttaccaa cccccggcgg accaactaag cacaaaatcg
     3421 gaccttttaa tttatttaga cgactttgca ctgctaagta ttctacaatc cgctctttca
     3481 ctcgttctaa gccgtagtgg tctttatcca aaatctcttg agcttgggct aaatcttttt
     3541 tgaccgctga ttttttatgc cacggcattt gtaaaatcca gtcaatataa ccacgcacaa
     3601 cggtagcttc ggaagagctt tgcggcattg ctttgagctt tttgaactcc gtattcagct
     3661 tgtcttttac ctcggtcggt aattttgcag cgtcaatttt ctctttaagc ttatctaact
     3721 cgctttgttc aacgtcatcg ccattaccta actctttttg aatcgcttta atttgctcgt
     3781 tgaggtagta atcacgttgg tttttttcca tttgctgttt aacacgatta cgaatccgag
     3841 tttcggtttc aagcgtatcc atctcagttg ccatcgcaat taacaaggct tcaaaacggg
     3901 caatcagatt tggttgctcc aataattcct gttttttctt caccggagca attaagttag
     3961 aggcaatggt atccgccaag cggtcttcca acgtgatttt ttgcagttta gcaataattt
     4021 ccgccggaat tttcttgtta tttttaacgt aattttcaaa ttcggttaaa gtggttttag
     4081 caatcgcttt taactcttcg ttttcgtcat catattccga atatattggc tgaattgccg
     4141 cccagaagcc gttttcatca tcgtgaattt gctcgatttt ggcacgggtt tgtccttcta
     4201 ccagcacttt aactgtgccg tccggcaggt ttaacatttg aataatgttg gcaattacac
     4261 ctacgccata catatcttct gcattcggct cttctttatt tggatcttgc tgagtgacta
     4321 aaaacagttg tttattggaa tccatcgccg agcgtagggc ttgaattgat ttttcacgtc
     4381 ctacaaataa cggcataacc atataaggaa aaaccaccac atcacgcaat gggagtagtg
     4441 gtaattcaat cgctttcttt tttcttggtg ccataaattt gctctctcta tcaaaatata
     4501 atcccccatt atgagggcga atttgggaaa aacaagggaa aatttgattt atcttaaaaa
     4561 aactcgaata gtcaaaacag tagatgttgg cgatttaatc aattgttaaa atcagggtaa
     4621 ttagcttaat ttcccgcttg acatcaaatc gtaatgcgag caaaatcccc tgcatatttt
     4681 aatcttcagg gcagggtgaa attcccgatc ggcggtaaag tccgcgagcc gagcaatcgg
     4741 caggatttgg tgaaattcca aaaccgacag tatagtctgg atgaaagaag agtcaaaaac
     4801 cgcaaaaaat accgcacaag cggtcatttt ttgtgtcttt tttgcaagcc ttgagtcgtg
     4861 agatttcaag gcttcattgt tttgcaggcg gcgtttgcaa attttttact aaaaacgacc
     4921 gcttgtattg caataatcct ttcattacgc cctcaattta tcaaaatgta tatgacagat
     4981 gttcaatata tggcttatgc catcaccctt gccgaaaaag cacggggttg gacaagccct
     5041 aatccgctag ttggctgtgt gatcgtgaaa aacggcaaca ttatcgccga agggtatcac
     5101 caaaaagccg gtagttggca cgctgaacgc aatgcgattt taaactgcga ggaagatctg
     5161 acgggggcaa ccgcttatgt aaccttagag ccttgttgcc accacgggcg aaccccgcct
     5221 tgttccgaac tgctgattga acgtgggatc aaaaaagtgt ttatcggctc tcgagatccg
     5281 aacccacttg tttctggcaa aggagcggca cagcttagag ccgccggcat tgaggttgtg
     5341 gaagacttta tgcgaacgga gtgcgatgcg ctgaacccga ttttcttcca ttacattcaa
     5401 accaaacgcc cttatgtgtt gctgaaatat gggatgacgg cagatggtaa aattgcgact
     5461 tatacgggga attcgaaatg gatcaccggc gaggctgccc gagctaatgt acagaaaagc
     5521 cgccacgaat atagtgcgat tatggtcggg gtggaaacgg tgcttgccga tgacccaatg
     5581 ctcaacagcc gaatggaaaa tgctaaacag ccggtgcgga ttgtatgtga cagccaactg
     5641 cgtaccccat tggatagcca actagtccaa actgcacgcc aatatcgcac cattattgct
     5701 acgctcaata atgatgcaaa aaagcaggca gaatataccg cttgcggtgt tgaaatttta
     5761 gtgacaggcg aacgtgacaa gcgggtggat ttagccgatc ttttgcaaaa gctgggcgaa
     5821 ctcgggatcg acagcttatt gattgaaggt ggttcgcaac tcaatttcag cgtgctggaa
     5881 caggggttag tcaatcgagt acattgctat attgccccga aactgattgg cggcaaagcg
     5941 gcaaaaaccc cgattggtgg caaggggatt ggcgagttag cacaagcggt taaattacgt
     6001 ctaaaatcca ccgaattgct cggagaagat attttgttgg attatgaagt ggacttgctt
     6061 cgtaattaaa ttgaaatttc cttactctcg cccgtttacg ggagagagac agcataaaat
     6121 ttcgttcaga aattttatgc agagagaggg gaaaatgagt gtaatcttcc ctctccctcc
     6181 gaaaatccta cggattttct cttccctctc ccgtaaacgg gagaggggaa tagtaagata
     6241 agcagttctc agactaaatt ggaagtaaat cggagaaaaa tttaaatgtt cacaggcatt
     6301 atcgaagaag ttggccagat agcccaaatt aagaaacaag gcgagtttgt ggtggtaacg
     6361 gttaaagcaa aaaagattct gaccgatgta catttagggg atagcattgc ggtaaatggc
     6421 gtgtgtttaa ccgtgacttc atttacgcag gagcaattta ctgctgatgt tatgtcagaa
     6481 accttaaaac gtacatcact tggcgaatta agtatcaaca gctcggttaa tcttgagcgg
     6541 gcaatggcgg caaacgggcg ttttggtggg catattgtgt caggtcatat tgatggcacg
     6601 ggtgtggttg cagagattac accagcagat aattcaactt ggtatcgcat taaagccgaa
     6661 cctaagttaa tgcgttacat cattgaaaaa ggctcaatta ctattgatgg cattagttta
     6721 acggtggtgg atgttgatgc ggaatctttc cgggtatcga ttattccgca taccattaag
     6781 gaaaccgacc tcggtacgaa aaaaatcggt agtttggtga atttagaaaa tgacattgtc
     6841 ggcaaatata tcgaacagtt tttattgaaa aaagagcctg aaaatccgca aagtaaaatt
     6901 actgcggact ttcttaaaaa tgcagggttt taaccaaata aaggacaaat aatgtttaag
     6961 ttttcaacgg tagaagaagc aattcaagca attgcacaag ggaaaattat tttagtcagc
     7021 gatgatgccg accgtgaaaa tgaaggggac ttcatttgtg cagcggaatt tgcgacaccg
     7081 gaaaatatca actttatggc gaaatatggt aaagggttga tttgtacgcc gatttcgaca
     7141 gaaattgcca aaaaattaaa ttttcacccg atggtgctag agaacgaaga taatcatcaa
     7201 accgcattta ccgtttctgt tgaccatatt caaaccggca ccggtatttc cgcttttgag
     7261 cgttcattaa cttgcctgaa aatgcttgat gaaaatgcta agccggaaga ttttagacgt
     7321 ccggggcatg ttttcccatt agtggcaaaa gacggaggcg tattagtgcg taacggtcat
     7381 accgaagcaa ctgtggattt agctcgtttg gcgggcttga aaccggcagg gctttgctgt
     7441 gaaattatgg cagaagacgg cacgatgatg cagatgccgg aattacaggc atttgcacaa
     7501 gcacacaata tgccgtttat tactattcag cagttacaag agtatcgtag aaaacacgac
     7561 agcttggtga atgtggtttc ggtggtaaaa atgccgacca aatacggtga gttcaaagca
     7621 cacagtttcg ttgaaactat ttcaggcaaa gaacacgtcg ctttagttaa aggtgatatt
     7681 ggtgatggcg aaaatgtatt atgccgtatc cattccgaat gtttaaccgg cgatgccttt
     7741 ggctcacaac gttgcgattg tggtcagcag ttcgcagcgg caatgaacca agtggagcaa
     7801 gagggcagag gcgtggtgct ttatttacgc caagaaggac gtggcatcgg tttaattaat
     7861 aaactgcgtg cttacgaatt gcaagataga ggaatggaca cggttgaagc caacctggca
     7921 ttaggtttca aagatgatga gcgtgaatat tatatcgccg ctcaaatgtt tgaaaaatta
     7981 ggcgtaaaat cgattcgttt gttaaccaat aatccggcaa aaattgaagg actcattgag
     8041 caaggtttaa acgtagtggc tcgtgagccg attatggttg agccaaacga acacgatttg
     8101 gaatacctta aagttaaaca gcacaaaatg cgacatatgt ttaatttcta atccaatact
     8161 ctctcccctt gtgggagaga gacagaaaaa tacttcgttc agaagtattt ttcagagaga
     8221 gggtatattt tttagaaaaa gtttgcaatt tcccctctcc ctgatttttc ttctgaacga
     8281 agaaaaatct atccctctcc cacaagggga gagggttatt gagtatcaaa tttattttaa
     8341 agaaggaaaa caaacaatgg caacatttca aggaaactac atcgcaactg gtttaaaatt
     8401 cggtattgtg gcaactaact ggcacaagat ttttatcgat caactgttaa acggtgcaac
     8461 cgataaatta ttgcgtcacg gcgtagaaga aaaaaatatc gacaccgtat gggtgccggg
     8521 tgcattagaa atctcaattg cagcgaaaaa aatggcacaa agcggtcgtt atgatgcgat
     8581 tatctgctta ggtgcggtcg tgcgtggagc aaccagccac tatgatgtgg tagtgaacga
     8641 gtcagcaaaa ggcatcagct cttctgcttt agaaaccggc gtgccgatta ttaacggtat
     8701 tttaacggtg gaaaatttag agcaagcgat tgagcgttca ggcactaaag ccggtaataa
     8761 aggcgaagag tgtgcaatgg tagcgattga aatggcgaac ctattaaaag ccttagcgta
     8821 atcagcgata aaatcccctt agacccaaga gcctaagggg atttttttat tttctgcgta
     8881 gtaacaggct ggcaatgaca caaaataggc tgaaactgta aattaaccag tgacctaatt
     8941 gtttaaacgg cgtatcgcct ttggttggca caatggtggc agttagtgca tcagcagtaa
     9001 attgcggtag ttgttcaatt acttttccgt tggcatcaac aatggcggta ataccggtat
     9061 tcgcagctcg aagcaatggt ttgccaagtt ctaacgctcg cattcttgcc atttggaaat
     9121 gttgccaagg cccgatggaa gaaccaaacc acgcatcatt ggtgatagtt aataaataat
     9181 ctgaattttg gcttttttgg ttttgttgta actgatcacc aaaaataatt tcatagcaaa
     9241 tcgccatatt aaatcggttg tttttcgcca agaatgatgg ttgaacgaaa ctgccttgtg
     9301 aaagattaat tggtagaata aacacttccc gcatccaatc cagcaccgag ccaaacggca
     9361 catattcgcc aaacggcaca aggtgatgtt tgttgtagcg agggttgctg tgcagggcat
     9421 attccctctc tttttcgcct aatagcacgc tactgttaaa cagttcctct tgctcatttt
     9481 gatagagtgt gccgataata atttcacttc cgtgttggcg agctaagtga tcgagcgagc
     9541 caagcagcgg gctgatttga ttttcaagtg ccggaatggc ggattcaggc aaaataatca
     9601 gttcactgtt acctaatagg ggcagaatga gctgttcgta ggttcgtacg ctgtggttga
     9661 aatgttgcgg atcccacttc attttttgct caatattccc ttgtactaaa ctcactacaa
     9721 gcggttgttt ttctgtatca atttgcacaa attggagaaa gcgagtggca aaacttaagc
     9781 caaaaatgac cgctagtacc atcaatgatg gcacagtttt gttctcttgc tgaataattt
     9841 tcactagata gctacttgca actattacca agaaagtcaa accttcaacg cccaaaatcg
     9901 gcgcaatacc agcaaagggg ctgtctatta agctatagcc gaattgtagc cacggaaaac
     9961 cggtaaatac cacgcctcgt aaatattcgg taaaggtaaa aatcgcagcc aatgcaaacg
    10021 gattattcag tttgagcctg tgtgaaacta cactaaacag cagattataa atagcgagat
    10081 agcacgccaa caggaatact gctatgtagc ttactatggt aggaacacca ccaaattggg
    10141 tcatactcac agaaacccag tttacaccgg tgcagaagta gccgatagac caagcaaagg
    10201 ttgcccataa tgcggttttt ctgtttgcca gagtggctga ccaaaccaag ccggctgcgg
    10261 aagcaaaggc aagaatccaa atatcaaaag gcgaataggc gaaagtgccg attgcaccca
    10321 gtatgattgc aaggagacaa gcggttaaaa aaggcggatt ttttgcaaaa ttcataataa
    10381 ctcactaaat aaatgaggca cgccgaaacg tgccttgatt gaaactcact atattattct
    10441 tcttcgttag gagaggtttt ttccattttc tctaactgtt catcggaaag tgtgactcgt
    10501 agctgaatca attggcggct attagctgag gtgactttaa aatcaattcc gtttaactca
    10561 atttgctcat ctcgtttcgg gaaataaccg aaagcctgca tcactaaacc accaatggta
    10621 tccacctctt cgtcattaaa gtcggtagca aaaaattcat tgaatttttt gatgtcggtg
    10681 agcggtaata ccgcataagt atgtcttgaa agctggcgaa ttggtttgac ctcttcttca
    10741 tcaaactcat cttcaatatc acccacaatt tgttcaagaa tgtcttcaat ggtgactaag
    10801 cctgaaaccg caccaaattc atcaaccact actgccatat ggaagcgttc tgaacggaac
    10861 tcttttagca ttcggtctag gcgtttgctt tccggtacaa taaccgcagg gcgtaatacc
    10921 tgttgcagat taaagggttc agagtcagaa cgtaaatatt tcaataaatc tttagagtga
    10981 agaatacctt cgatagtatc tttctcaccc cgaatcaccg gaaaacgaga gtgtgcggat
    11041 tcaataatta aatcaataca gacatctaaa ggttcattgg catcaataaa cacaatttgc
    11101 gcacggggaa tcataatatc ccgcactcgt aattccgaga tttccattac tccttcgatc
    11161 atctctttgg tgtcgctgtc gatcaattca ttttcaacag agtctcgaat cacttcgact
    11221 agatcttcac ggtttttagg ctcgttttga aaaagcccgc taaatagaga gtgtaaaatc
    11281 gatttttttt ctgatttttc ggtggtgttt acactttgct gttcatcact catagtttgt
    11341 tccacttaaa taaagtacgc ttataataag caaattcagt cacaaagcaa ataaaacatt
    11401 gctattttca ctcaaattag cataggataa gcaaaaatct ttttatttct tcatatttta
    11461 ggagtttgaa atgaaattaa ccaaaatagc attaagttta acagccttag ttgtcagttc
    11521 gatgagtgtg gccgggacgt taagtacatc atcaatggtg gacattttag cctttgacgg
    11581 gcaacgtgtt aaatccggca cgacttcggt tcaaatgagt gagaataaaa cgcatcaagt
    11641 ggtagtggaa gtcggtggga cagttgaagg ggattttttc acctctgatc aaatcatttt
    11701 gactttccaa ggcagtgcgg aaaatgcaaa attagaaacg ccaagattaa attcaaagtt
    11761 agatcttcgt aaattccaag agaatcagac tgtggcaatt aaaaccgatt caggtaaggt
    11821 tatttcacat aaacaagatt tcttaaaagg ggaaggtttc cttgcgaaaa caagagttga
    11881 agataattta acgaaatata acttagcgaa aaaaacagct tcagttgaac agtttgcgac
    11941 ggcacctctt gaagcaaaag gacaaattgt ggtggataca aataaagttt cacaagaaga
    12001 attacagctt ttatttagaa aggcagataa agacacccaa aaacgtttct tagaatgggc
    12061 gaagaaaaat ataaaataaa cctatatcaa ttaataagcg gtcatttctc gccaattttt
    12121 tgcaaggtgt taaaaaaatg accgctcata caatgagatt taccagcaat aatagcagta
    12181 acgccagcct ctatacatat agtctctatc gtaattccaa cgaatttctt caagttctac
    12241 ttgtgccttg taattttgcc aagcaagctt ataacaggct tggaacattg gggcattgac
    12301 tttttcggca tagcgtttct taaatgcttt ctcttcttgt tcggtttggc taagcggcgg
    12361 attaaattgt tggtacatta actccgccgt ttctacatca cattgtttgg cgagctgaac
    12421 ttgcaaatct tgttctgccc gaatttgctt cgctttacgt tcagcttgtt gctctggagt
    12481 taaagtacag ctacttaaca taagtgcgag tgaaaaaatg cagcctaatt tgagtgtttt
    12541 cattgctgaa tcctctagtt gaaattggtg atttattcta ccgcttctaa ctcactttct
    12601 tcaagttcat cagccatagc actaagggca tcacggctaa gttgtgcgag ggctttataa
    12661 aaaccattgt cgaaagcttc tatttttcct aagaatttgc ctgcacaagg tagtaaaaat
    12721 tgttcgaata atattttttg agctaaggca gaatcgagat tatcttcgat ccaagatgcc
    12781 gtgagaaata gtaacccaat gtgatcggca ttttctaatt caggcattgc ccgctcttgt
    12841 ctaaaagcta caaaattatt aactgataat ccataggctg aaattgttgg agaaatagcc
    12901 ccattttcag caaaaagcgc ttgatagctt gctgctaatt gcgtagggtt agcattcttt
    12961 tgtaagagag tcagcgcatt ttcactttgg ctatccgtat ttaatgccca gacttggcgt
    13021 aatcctcctt gggcaagcca gttaaatgtg ccagctaaaa tagggtcggt agggtgacga
    13081 taaaataagt tgccaaacaa acggcaaagc agggaaaaat cgttaatggt agtttcgttc
    13141 ataatttgaa atagatagaa aaaagaattg ttagtatagc agaacacaag agaggactga
    13201 atgaaatata taggcgcaca cgttagtgct tcaggtgggg tggaaaatgc agttttgcgt
    13261 tccgtagaaa ttggtgctaa tgcatttgcg ttatttacta agaatcaacg tcaatggcag
    13321 gcaccggcat taaaagccga aactatcgaa aaatttaagc gtttttgtaa agtgcatcat
    13381 ttttcagcag agcaaatctt accacacgat agctatttga ttaatttagg aaatccggaa
    13441 gcggaggcat tggagaaatc tcgtgtagca tttattgatg agatgtctcg agcaaatcaa
    13501 ttaggtttaa aattgttgaa ttttcacccg ggggcgcatt taaagcaaat ttccgagcaa
    13561 gattgtttgg ctagaattgc agaatcgatc aatattgcag ttgaaaaagt accgaatgtt
    13621 attgccgtga ttgaaaatac ggcaggacag ggttctaatt taggttggca tttcgatcat
    13681 ttggcaacta ttattgagca agttgaggat aaaagccgag tgggggtgtg tttagatact
    13741 tgtcacttat tttctgccgg ctatgatatt agttcttatg aaaagagcga ggcagtattt
    13801 aatgatttta accaaacggt tggttttcat tatttaaggg gaatgcactt aaatggttca
    13861 aaaacaccat taggcagcag agtggatcgt catcatacct taagagaagg cacaatagga
    13921 accgaagtgt ttgcatttat tatgcaaaat atgcatttta accatattcc tatgatttta
    13981 gagacaattt cgcctgaaat ttgggcagat gaaataaaat ttctacgcac attggaacta
    14041 aaataggtta tactggtctg agtagtgggt ctagcagagt ctagacctta ttttgttatc
    14101 ttttttaatc ttttagaaga tttagttaag gaatttaccg ctgtaattgt tctggcgaga
    14161 cgagacataa attatgaaaa aaaatctttt tgcaacaacc ttcaagcccg tatttattgc
    14221 ttctattttg tctgtttttg gagggtattc ttccattgct gtagcaagtt taagttctaa
    14281 accggccaca ccaaatcaaa tcattgcaag taaagcagaa agattagcta agtcttcttc
    14341 agtatttacc aatcgagcaa atcttccaac ttcttccgct catacagcga attatagtgg
    14401 tcgtattaat agtgtttatc ataattgggt agggacacgc tatcgtttag gcggcacaac
    14461 aaaagcagga attgattgtt ccgcctttgt gcgtgaagta atgggcaaag catttagtaa
    14521 agatatgcct cgttcaactg cagaacaacg ccatgtcggg cattccattt caaaatctga
    14581 tttacgccca ggtgatttag tctttttccg taagaataac catgtagggg tttatattgg
    14641 taatggtaaa tttgtacacg ctagttcaag tagaggggta accaccagct cattgtcaga
    14701 aagctactgg tcaagaaact acacacaatc tcgccgtgta atttaataaa ttacaattcc
    14761 aagatgaaaa gaacactcac ttttgcgagt gttctttttt aattaaaaaa gtttatgcta
    14821 cgcgttgctt agcttgtgta aatgctccac gagtacgcat ttgatgaacc acattagtaa
    14881 ttacacctgc tatttttact tcagcccaat cagtaattct aagatttgat tcgctcacat
    14941 ctaatgaaaa taaaattttt tcagcaatac cttccccatt ctgaatttca ttaaagaatt
    15001 gatagaattt atattcccca tctttttcaa gcaccaatag atcattaact aaatattggt
    15061 tggtctgttc tacaatcaat aaatcgtcta gttcaattcc ccacgcgatt aaatttgggt
    15121 ttttcacgtg gataaaaaaa gtgtctcttg ggcgtttgat acaaagtgag ttaagatcga
    15181 gctttacaga gcggctgcta ttgaaatccc gataaagcgg aatcggctga taagctgccg
    15241 tttgatctga aatttgtcta attgaagcca tagtaaaatc ctctatctgt ttttttatac
    15301 agggtatttt actggctaaa ataccagtgt caaccattat tttggaattt tttgtaaatt
    15361 taaccagtgt tttgaccgct tgttatcctt taaaaagcaa taaaaaagca cccatagggt
    15421 gcttcttatg cttaaaagct gttattatag gctttcagtg aatgtacgag taataacatc
    15481 gcgttgttgc tcaggggtta atgagttgaa acgaactgca taacctgaaa cacggatcgt
    15541 taattgagga tatttctcag ggttttgaat cgcatcttct aatgtttcac ggcgtaaaac
    15601 gtttacgttt aagtgctgac caccttcaac tttaatcgtt ggtgcaacat taacgggtac
    15661 ttcacggtat gcgatatcac ctaattcgct gatagcaaca acttgatctt cttcaaatcc
    15721 tgcttttgca gctaaacaac gagcttcatt tttagcttcg tctaataacc agaaagagtt
    15781 taataagttg ctgtttgatg attctgtgat ttgtac
//
LOCUS       DANLXB010000047        15478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLXB010000047 DANLXB010000000
VERSION     DANLXB010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            63..590
                     /locus_tag="PXD41_000946"
     CDS             63..590
                     /locus_tag="PXD41_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288494.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            657..1235
                     /gene="ruvC"
                     /locus_tag="PXD41_000947"
     CDS             657..1235
                     /gene="ruvC"
                     /locus_tag="PXD41_000947"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL6288495.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(1301..2581)
                     /gene="murA"
                     /locus_tag="PXD41_000948"
     CDS             complement(1301..2581)
                     /gene="murA"
                     /locus_tag="PXD41_000948"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL6288496.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(2691..2951)
                     /locus_tag="PXD41_000949"
     CDS             complement(2691..2951)
                     /locus_tag="PXD41_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6288497.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(2984..3307)
                     /locus_tag="PXD41_000950"
     CDS             complement(2984..3307)
                     /locus_tag="PXD41_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL6288498.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(3319..3954)
                     /gene="mlaC"
                     /locus_tag="PXD41_000951"
     CDS             complement(3319..3954)
                     /gene="mlaC"
                     /locus_tag="PXD41_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL6288499.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(4000..4524)
                     /gene="mlaD"
                     /locus_tag="PXD41_000952"
     CDS             complement(4000..4524)
                     /gene="mlaD"
                     /locus_tag="PXD41_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL6288500.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(4545..5321)
                     /gene="mlaE"
                     /locus_tag="PXD41_000953"
     CDS             complement(4545..5321)
                     /gene="mlaE"
                     /locus_tag="PXD41_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL6288501.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(5314..6117)
                     /gene="mlaF"
                     /locus_tag="PXD41_000954"
     CDS             complement(5314..6117)
                     /gene="mlaF"
                     /locus_tag="PXD41_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL6288502.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            6342..7736
                     /locus_tag="PXD41_000955"
     CDS             6342..7736
                     /locus_tag="PXD41_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL6288503.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(7788..8549)
                     /locus_tag="PXD41_000956"
     CDS             complement(7788..8549)
                     /locus_tag="PXD41_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL6288504.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(8536..8988)
                     /gene="nrfF"
                     /locus_tag="PXD41_000957"
     CDS             complement(8536..8988)
                     /gene="nrfF"
                     /locus_tag="PXD41_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL6288505.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(8978..9511)
                     /locus_tag="PXD41_000958"
     CDS             complement(8978..9511)
                     /locus_tag="PXD41_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL6288506.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(9508..11412)
                     /gene="nrfE"
                     /locus_tag="PXD41_000959"
     CDS             complement(9508..11412)
                     /gene="nrfE"
                     /locus_tag="PXD41_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL6288507.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(11682..12629)
                     /gene="nrfD"
                     /locus_tag="PXD41_000960"
     CDS             complement(11682..12629)
                     /gene="nrfD"
                     /locus_tag="PXD41_000960"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL6288508.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(12629..13306)
                     /gene="nrfC"
                     /locus_tag="PXD41_000961"
     CDS             complement(12629..13306)
                     /gene="nrfC"
                     /locus_tag="PXD41_000961"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL6288509.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(13306..13962)
                     /gene="nrfB"
                     /locus_tag="PXD41_000962"
     CDS             complement(13306..13962)
                     /gene="nrfB"
                     /locus_tag="PXD41_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL6288510.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(13981..15456)
                     /gene="nrfA"
                     /locus_tag="PXD41_000963"
     CDS             complement(13981..15456)
                     /gene="nrfA"
                     /locus_tag="PXD41_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL6288511.1"
                     /translation="MATISILGCLQTALAEEAKTESLTDKAVKHEKLGVKIESANHLF
                     AEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGHFYAVTDVRD
                     ILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGAEIVNSIGCA
                     DCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCANCHVEYYFK
                     NKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEVWSQGTHGKN
                     GVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEKRVKEYKHEV
                     KEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSAAGHGNHFHA
                     PDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLAIGLDIPKEQ
                     AAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         4596 a         3476 c         3042 g         4364 t
ORIGIN      
        1 tactgactaa cctaatgtag tttatatgct actactttac tataacattt taaggagagt
       61 ctatgaaatt agtgaaattt gtccctgccc tagcagcaac tttagtatta gccgcttgct
      121 ctaatgcaaa cacacaatct gctcctcagc aagctcagga cgctgtgact aaagtggctg
      181 aacaagcaac acagcaagtg aatgaaattg caggtaatgc acctcgtgca agtggtgcag
      241 taaaagtaga aaaagcaact gatggtgcaa aatcaattgt atatcgttgc caaagtggta
      301 aacgtgtaac tgcgaattat gtcttccaag gagaagaggc aaaagcagta aatctattag
      361 tccaaagcgg cggtaaaaca caaaagatcc caacattaac tcgtgatgcc tcaaaccaag
      421 attctacttc attcaaaacg gataaatatt cttgggattt agacacaggc tttaccttat
      481 catctaatgg ccagtcaggt atgctaacca agtatggtgc taaaacagat accatcgttg
      541 ctaaattatg tgatgtagat aaagcattaa cctcaaaatt aaataaataa tctttcttga
      601 ttttactact cataagcgag aagataatat cttctcgctt attttattgc acaaagatgg
      661 ctattatttt aggaattgac cccggctcaa gggtaacagg ttacggtgtg attcgccaaa
      721 acgggcgaca gctggaatat ttaggaagtg gggctattcg aaccacggct gaagatctgc
      781 ctacccgctt aaaacggatt tatgcaggcg tgagtgaaat catcactcaa tttcaaccaa
      841 atatgttcgc tatagagcag gtatttatgg caaaaaaccc tgattctgcc ttaaagctcg
      901 ggcaggctcg aggaacagcg attgtagcag cggttaatca cgatttacct gtgtttgaat
      961 atgccgcccg attagtcaaa caaaccgtta cgggaattgg ttctgctgat aaagtacaag
     1021 tgcaagatat ggtaacccgt atgcttaaac tctccgccaa accacaagcc gatgcggctg
     1081 atgcattagc cattgcgatt acccacgctc attcaatcca acattcactg attgttgcta
     1141 agcaaagcca gcagaatgtg agtagtgaga aagagcaaat tttagcacta atgaaaaccc
     1201 gttatagccg gggaaggttt aggttaaaag gctaactcaa tataaaatga ccgcttggaa
     1261 ctaatgtttc aagcggtcat tttttgagaa aattttacaa ttactcgcct tcaaaaggag
     1321 ctgagaaacg ttcaattctc gccccaatct gacgtaattt ttcttcgatg tgttcatagc
     1381 cacggtctat gtggtaaatt ctatccacaa tcgtttcacc cgttgcaata cagcctgcca
     1441 acactaagct gatggaagca cgcaagtcag ttgccattac ttctgctgat tttaactgct
     1501 ctacaccata gcaaattgca atattacctt caatttccgc tttggcaccc atacgaatca
     1561 gctcaggaat atgcataaaa cggttttcaa aaatcgtttc tgtaatacgg cttgtgcctt
     1621 ctgcaactgt atttaataag gtaaattgag cttgcatatc agttgggaaa cctgggtgtg
     1681 gcatagtgcg aatgttcact gctttcgggc gacgacctag agaatcaagc gtgatagtat
     1741 tttccgtcac atcaacctgc attccagctt cacgtaattt ttcgatcact gcatcaagag
     1801 tgtctgcttt ggtgttacgg caagtaattc gaccaccgga aatagccgct gccactaaaa
     1861 atgtaccggt ttcaatacga tccggcacta cgctgtgttc gcaaccgcct aaatgctcaa
     1921 ccccttcaat ggtaatcata tcggtacctg caccagaaat tttagctccc atcgcattta
     1981 agaaatcggc agtatctaca atttcaggct cacgagcagc attttcaata acagtagtac
     2041 cttttgctag agtacctgcc atcatcaccg ataaagttgc tcctacgctc actttatcca
     2101 tatagattct tgcaccgttt aaacgaccgt ttgaagttgc tttgacatag ccttcatcaa
     2161 gctcgatttt cgcccccatt ttttcaagac cggaaatgtg catatctacc ggtcttgccc
     2221 cgatagtaca accgcccggt aaagaaactt gcccaagttg gaaccgggca actaatggag
     2281 ctaacgccca aattgaagca cgcattgttt tcactaattc gtaaggtgca acgtaattat
     2341 tgatcttact cgcatcaata tgtaccacgc ctttatcgct acctttttca accgttaccc
     2401 ctaattggcg taagatttta aaagtggtgt ccacatcttt taaatcaggc acatttttta
     2461 acgtaactgt tttttcagcc aaaatagcgg caaataaaat agggagtgcg gcatttttcg
     2521 cacctgaaat atcgacagta ccatttaaag aaaatggacc atacacacga aatttttcca
     2581 tttgggagat cctaaaaaat aataatttgt aggggcgaaa aatttttcgc ccaattttcc
     2641 aacgtttaca aaagagtttg ggcgaatagt gattcgcccc tacatttcat ctatccaacc
     2701 atatttagca aacgctcagt tttccatttt tccacgctga atactttaat ggttaaagcg
     2761 tgaatcgcat tagtagtgaa atactcagct aaaggggcat aaacagcttg ctgttgtttt
     2821 acttttgaaa gagaagcaat gctgtcactt actacaataa cgccaaagtg ggcattctcg
     2881 ccttgagcgt ggacttctgt tgcatcagat aatgcttgtt ttaaaatttc ttcaatttgt
     2941 gatggattca ttctgacttc ctaaaatatg attggtaact cactcaaata ataaattgct
     3001 caaaccaacc gtctaaatcg tataatgcag ccaaagttct gacagaatct ggcgtattaa
     3061 tcaaactgtt tggtatgatt ttatggtaat gattcagtaa ttcagcaagt aaggtaaaac
     3121 cggcagaatc aatccgagtg atttctttta aatcccaata taggctttgt ttccctgttg
     3181 gagataaaaa agaagcacgt tgcttccata aagggagcaa cgtgttacga gttaattcgc
     3241 ctgatagttt cacaaaaaga ctttcgttat tttgctgaat gtcccattgt aatgtttttt
     3301 gaggcataac taaactactt attttaaagt gataggctgt tttgcagatt gtgccacttg
     3361 tgcaattaag gcatcaatcc ctttttgacg aatcacaccc gcccattcgt tttgcttggt
     3421 tgcaaccata cttactcctt cagcggccat atcgtatgct tgccattcac ctgttttgct
     3481 gtttttacgc catttaaaat ctaatttgat cggctgtgca gcacctttac ctgacacgtt
     3541 tacacgaatg cttacgatag atttaccatc caccgatttc gggctttcaa tttgcacact
     3601 ttgatcttga tactgggtta acacctgagc ataagactgc tcaacaaatt gaccaaaagc
     3661 attaaagaat gcctcttttt gtgcatcagt cgcagccgat aagtttttcc ctaacactaa
     3721 ttggcctgca tatttcacgt gaacgtgtgg cattaaatcg ttacgcacaa tggtacgcaa
     3781 atattcaggg tttgatttaa ttttcgcttg atttgcttta atatcgccaa ataatttatc
     3841 tgcggtttgt tgcattaata cataagggct agtttcagca aatgcggtgg ttgaaaataa
     3901 tgcagaaact gccactaagc ctgttacgat aattttttta atgtttttta acattattga
     3961 tgctctccaa aactctaaat tagaggttgt tgtacttaat tactctgctt ttggttcagc
     4021 agaatcactt gctttttcat cttcagtttt atctgacttt ttatcaccat ataagaactg
     4081 accgattaaa tcttctaaca ccattgcaga attggtatct acaaaagtat caccttcttt
     4141 catcattgca gtttcacctt cgattacgaa gccaacattt aacgcaacgt attgctcgcc
     4201 taataagcct gaggttttaa ttgagagcga gctggtatcg ggaatttgat taaaactttc
     4261 atttaccgct aatgccactt tcggggtgta ggttttgtta tcaagtgaaa tatcagccac
     4321 tcggccaact accacaccgc caactttaat aggcgcacga acctttagtc caccaatatt
     4381 atcaaaagtt gcatacaggg tgtaagtttt ctcatttgag aagccctgca catttgctac
     4441 tcttaagcct aaaaagacaa gagctgcaag cccaagtagt acaaataagc ctacccaaaa
     4501 ttcatattta attgattgac gcattgtctg ttcctttcaa aaaatcaacc gccgaacatt
     4561 atcgcagtta aaataaaatc caatcctaaa atcaccagtg aagcatttac caccgttctt
     4621 gtggtcgctt ggctgattcc ttctgaagtc ggtacgcaat cgtagccgtt aaataaggca
     4681 atccagacca ccgcaaaggc aaaaatcaca cttttaataa agccgttaat taaatcgctg
     4741 gtatttaccg agttttgcat taccgaccaa aaactgccac catcaacgcc tttccaatct
     4801 accccgacta atgagccgcc ccaaattccg atagcggtaa aaatagcagc taacaccggc
     4861 attgaaatca cgcctgccca aaagcgagga gcgatgatac gtctaagcgg atcaaccgcc
     4921 atcatttcaa gactggaaag ttgctctgtg gctttcatca gcccgatttc tgcggtcaat
     4981 gccgaaccgg ctcgccctgc aaataataat gcagtaacta caggaccaag ttctcgtaaa
     5041 agcgagagtg aaaccaaagt tcccaagcta ctttcggcgg caaaatcgac caataccaca
     5101 tagccttgta agcctaacac cattccgata aataagcccg acagcataat aattaagagc
     5161 gattgcactc ctaacacata aagctgttta atcagtaacg gggtatgttt tctaaattca
     5221 ggtttaccga ttaatgctcc ccataacata aaagcggaac gccctaatgt acggataaaa
     5281 ttaatcacca ccgccccgat agagctaata aaattaacca ttaaatagct cctccgtata
     5341 atcttttgct ggataatgga accgcaccgg accatcagct ttaccggcta agaattgtac
     5401 cacttgcgga tcttcgcttg cctgtaaaat ttccggtgta ccttcagcaa tcactcgttt
     5461 atctgccaca atataagcat aatcggcaat acttaatact tctttcacat cgtgagacac
     5521 cacaatggag gtcaaattca atgcctgatt taactcttta atcagctcga caatcacacc
     5581 catactaatc ggatcttgcc cggtaaacgg ctcatcatac ataatcagat ccggatctaa
     5641 cgcaatcgct cgagcaaggg cggcacgtct tgccataccg ccggaaagtt cggacggcat
     5701 taaatttgcc gcacctcgca acccaaccgc ctcgagcttc aataacacca atttgcgaat
     5761 tagctcttcg ggtaaacggg tatgctcccg aatcgggaaa gccacattat cgaaggtaga
     5821 aatatcggta aataacgccc ccgattgaaa caacatcccc attcgttggc gaatttcata
     5881 caactctttg ttattggctt tgcaaatatc tctgccatca aataaaattt cgcccgattc
     5941 aggtaaaatc tgcccaccga ttagcctcaa cagggtggtt ttaccaatcc cagaaggccc
     6001 cataatggca gtcactttac ctttctgcac ttgcagattc aggttatcgt aaatcactcg
     6061 ctcccctcgc ttgaaggtca agttttttac ttcaaccaaa ttttccgttt ttgtcatcaa
     6121 ataggactca aattaataaa agtgatattt atggtctatc aaatttgcca gaatgtcaaa
     6181 aaacttttaa taatctgaca aaaatctgcc tttacaagcg gtcagatttg ctaaattttt
     6241 tgcaaaccgg ctgaactgaa aaagaaaggt cttgtcttag ccaatacgag cgttttcact
     6301 cgtagattat aaaaacatag gatatgagga acattcacaa tatgaacaaa acaatgaaaa
     6361 aatcattttt aactgcattc attttaggct caaccattgc cgcaatgccg gcgtatgcag
     6421 aagcaacatt acccacagcc gtaaatgggc aagctgtgcc aagccttgca ccaatgctgg
     6481 aaaaagttcg cccggcggtg gtgagtattg cagtagaagg taaaaccaaa ggcgatagcc
     6541 gccgcagtcg tgaaattccg gaagaatttg aatttttctt cggtcctcac gccgatttat
     6601 tcggcaaccg ctcatcagct ccacgcaatt tccgtggcgt tggatcaggt gcagtcatca
     6661 atgccgaaaa aggttatgtg attaccaata accacgtgat cgacaatgcc gataaaatta
     6721 ccgtaaaact tgaagacgga cgtgaattta aagctaaatt agttggtgct gatccccttt
     6781 cagatgtggc gttaattcaa gttgaagatc caaaaaactt aactgaaatt aaattcgccg
     6841 attccgataa attacaagtg ggcgatttta cagttgcaat cggtaacccg tttggcttag
     6901 gacaaactgt tacttcaggc atcatctcgg cacttggtcg ttcaaccggt caatccgatg
     6961 aaggctatga aaactatatt caaaccgatg cggcagttaa ccaaggtaac tctggcggcc
     7021 cgttaattaa cttaaacggc gaattaatcg gaattaacac cgctattatt tctccaagtg
     7081 gtggcaatgc cggtatcgcc tttgcgattc caagtaatat ggcaaacagc ttggtgactc
     7141 aaattattga gtttggtgaa gtaaaacgtg gaatgttagg cattaaaggc ggtgaattga
     7201 atgctgacct tgctaaagag ttcaatattt ccacccaaca aggggcattt gtaagcgaag
     7261 tcttaccgga ttctgctgct gctaaagccg gctttaaagc aggtgatgtg attactgaaa
     7321 tcaacggtca aaaaatccgt agtttcagcg aattacgagc aaaagtagct acttcaggtg
     7381 taggtaaaga gattgaactt acttacctgc gtgacggcaa agaagccaaa gcaaaagtga
     7441 ccttacaatc ggattctgaa gccaaagtta ctgcttcaaa cctcattccg gcattaaaag
     7501 gggcagattt taacaactac aatgccaaag gcattaaagg ggttgaaatt tctaacgtag
     7561 aaaaaggctc gattgctgaa atgcgaagcc tcaaaaaagg cgatattatc atcggcgtga
     7621 accgccactc ggtagaaaac attgccgatt tacgcaaaat attagaaacc aagccatctg
     7681 tggttgcact caatattgtg cgtgacggtg caaatttcta tgtgattttg caataaacct
     7741 tttgatccac tcaaacaaaa gccgatgaca aaaatcatcg gcttttgtta ttgctgggaa
     7801 tttaacatct gtcgtgccat ttccatactt tggataatcg ctctgcggtt gatagaatca
     7861 ttattgctat ctaacacttt acgccaatta tcgagagctt gttgaaaatt gttatttaaa
     7921 aagctgtcgg aggctagcag gagtaaactg gcattttcat ttttatccaa ctgtagggct
     7981 tgctcgataa tggcttgaat ttcaacggtc attttctgcc cgttatcgta ataacgagcg
     8041 gtggcaatcg cccccaaaat agccgctcgt tttccgagta gcttctcggc attatcgtag
     8101 caaaccagtg ccgaatcaaa atcattgctt aacgcataag cctgccctag ttcgtaccat
     8161 aaatcaccgt tattcgggtt ttctcgaagc tggttttgca gactcaaaat atagcgttca
     8221 tttttcgatg tgccgtgtgc atcgctcatc tgttgttgaa aatcttgatg ttgttgcaaa
     8281 cctgattgca ccacttgata acgtccggaa agcccatagt aagtcattgc taacaacaaa
     8341 atcgccacgc aactcaggct tgcgatttta gcaagcggtc gattttgagc attattttgc
     8401 aaaacgctct gttcaaattg cgttcgttca aattggtaac gttgctctgc ctcacgctca
     8461 aactcttgtc tgacgtcatc tgcaaaatgt tgggcaaatt taaccgcttg ttggtagttt
     8521 tcttggctta attgctcacg cgttttcatt tttgttgcct ttatttttgc gagttcgcca
     8581 caaaatagct agaaataaca ggctaaacaa gccaaccggc aagccccata atacccatgt
     8641 ctgtggcgtg aatggtggat cgtaattcac aaaactgccg aaacgctcgg tcataatgcg
     8701 gataatttcc tcattacttt tcccttgatt caccatttca tacacttcaa ttcgcatatt
     8761 gtaagccgcc gtcgcattgg attcgaccaa attttggttc tgacattgca aacatcgcaa
     8821 cgaacgagcc agtgaaatcg cccgtacccg atccgcctca ttttgaaatt gaaaggtgtc
     8881 caccatttca gcttgaaccg tgccgacaaa tagcaacaag ccaaatacaa gcggtaatat
     8941 tttgcggatt ttttgcaaaa agccgatgga aattatgcta tttctcattt ctgagagcct
     9001 ctaatttggg taggaaatcc tgtgcaaaat cagggttgta acccttttgt tggtaacgca
     9061 ctacaccgtg tttatcaatc aaataactgg aaggtgcaga agagactttc agggtttgga
     9121 tcaaaaagcc tttttcgtaa tcatcaataa ttaaactaaa cggatttccc cagtttttca
     9181 atgcgttgag ggcatcattt gggcggtcgc tataagttaa gccgacaatc ggcacgcctt
     9241 tttgttttag ttccaacaaa atcgggaact ctttaatgca ccaagtacac cagctcaccc
     9301 acacattgag aatataaggc tctttcggca agctgttgtt atttaaatgc gcgttactat
     9361 caagtaagtt cttgcctaca aactctggaa acggcttgcc ctgccaatct tcagtgggag
     9421 caagggcatc tttattcatt aacggcacag tcaaaaagcc aacaataact acaagtaaca
     9481 ggagcggaat aagtaacagg atttttttca ttttttgttt tctctacgat aaccgaataa
     9541 tgccaacagg gcggccatta ccatcatcat accacctaac cataaggctt gcacataagg
     9601 cttatagtgc aaacggaagg catattctaa attgccgaac ttatccccca tcacaatata
     9661 aatatcgtct aaattgtggt ggaaaagccc tacttctgcc attgtcatcg ttcttacatc
     9721 ataatagcgt ctttccggtg tgacggttgc cagcaactgt tcatctcggc tgatagaaaa
     9781 aacggcttgc tcggcggtgt agttcggacc gatgagatcg tgataatctt catatttaaa
     9841 ggtataaccg gcaagttccg ctgcttgatt cggctttaac cgcacgccga tttcatcgcc
     9901 gtaataactg ttcatcattg ccccaatcac gcaaaccgca aagccgatat gggctaaccg
     9961 catcgcaagc ggtcgaattt gccacatttt ttgcgaatag ggcaaatgag tgagaataat
    10021 ccagatcgca aggctgataa atatggtggg taacggctgc aaagcaaaat gctctctttg
    10081 cgagatggag gcataaatca accctaacgc taaaccgact gcaatcggca gcaaccaaag
    10141 ttttaccaat atctgcttat ttgaaatctg tttccagccc agcaccaccg caaagcccat
    10201 tactatcatt aacagtaacg ctagtggcgt gaatacgcta ttgaaatagg gggcccccac
    10261 tgaaatcgat ccccaattca tcactgtgaa gatcatcggg tagaaagtcc ccagcaatac
    10321 cacagaagca gccacactaa ataagccgtt aatcaataaa aatgccgttt ctttagaaag
    10381 taagttgaaa cgcactttgc cttgccagag attcgctcgg aatgcaaaca gagcaagggc
    10441 aatgaaactt aagccgaaga ataagatcag cagtgccatt cctctgtcgg gatcgaccgc
    10501 aaaggcatga accgaggtca gtacacccga acgaacaata aacgtgccta ataggcttaa
    10561 agcaaaggcg aaaatggcaa gtagaatcgt ccaataatag aaaatgccac gctgttggct
    10621 cacaattaaa ctatgcacca atgcggtgcc aagtagccaa ggcattaggg aggcattttc
    10681 caccggatcc caaaaccacc agccacccca gccgagttcg taatatgccc accacgcccc
    10741 taaaataatg ccggcggtga gaaatcccca cgaaatcatc gtccacggac gaagccaacg
    10801 cataatcgca gcgtccattc cgcctgaaac gagggcggcg acaatcattg caaagctcac
    10861 cgcaaagccg acatagccca agtagagcaa aggcgggtga aagatgagcc caatatcttg
    10921 caacattggg ttgagatctc gcccttcagg tggtggtgga aagccacgtt caaatgggct
    10981 ggaaaccaat agaatgaaaa gtagaaaacc tagtgcaatt agccctaaca tcgctaaggt
    11041 tcggttggca aacaagcggt caattttttg cgaaaatttg caaaataccg cagaccaaat
    11101 cacaagagcg gtgagccaaa acagcattga gccttcgtgt ccgccccaag tggcggcaaa
    11161 tttaaaaaaa tcggggagct ggctgttgga atgagcggca acgtagataa ccgaaaaatc
    11221 atcggttaga aaagcataag ctaaggtaga aaaggaaaat gtggtaaaag cagcttgcaa
    11281 ataagtgaaa agcggagcca atgccagcca atgatattgc ttgcgaactt cgcctagaag
    11341 tgcaaaacca acttgaaaaa tggcactaat tgcagccaat aaaagtgaaa aatagccgag
    11401 ttccggtagc ataaaaaatc caaaaaatga ccgcttgtga atgtaaaaaa agccctctcc
    11461 acttgtggga gagggacaga tttttcttcg ttcagaagaa aaatcaggga gaggggaatt
    11521 aaataatttt gctaaaaata acaatactcc ctctctctga aaaatatttc tgaacgaaat
    11581 atttttcggt ctcaatactc gctacgctcg ctccttcgga gccgttggca aagccaacgt
    11641 tcaaatgtaa acatttgtcc cacaagggga gagagtatat cctaacttgc aaccgttagt
    11701 tgccctgcat aaaggataaa gtaacgcaag cagagtacac cgattaagtc gaaaacggaa
    11761 attaagataa taaatttcac gttatgtttc aagcggtggc taccaaaaat attggcaaca
    11821 agcggaatcg caataccgat taacattacg cctatccaga acacattccc ccagaagccg
    11881 ttaagtgcat gggttaaagc gagcgattta tctgctccac cgaagtgtaa gcccacaaag
    11941 aacgctacaa ttaagcctaa ttcggttacc ataatcggca cttcaaattt gtgcataaag
    12001 tggacttcgt ggctttcacc ggataacttg cctgcgagta aaatcactag gaaagttgct
    12061 gcaatacctg acgatgcccc tgatgccaag aacaatgccg gtaacacagg gttattcagc
    12121 attggataac tcactaacgc cgagagtaag aaaccggtgt aagcaccaag tacagcagcc
    12181 aatacgaata agataaattc aattggtttt aacagcttcg cttcggcaaa atcgatcaaa
    12241 ccagagacca caggtagata ccgaacaatc caatctttaa acattatggc gatccaaacc
    12301 accaatactg ccatataaag ttggaataac attaccccca tcgacattac tgaggtaaag
    12361 ttatagttga acattaattt ccagaatgtc caaggtttgg ttaagtggaa aatcagtaac
    12421 agtaagccga taatggttgg taatgtgcca agaatagccg cactacgaat aatccagttt
    12481 tggcttggtt tttccatttt gacaccgcta ttacggtaag caatcgctaa ctgaaccgca
    12541 cctgatgaaa taccaagtag gaataagtaa atagcgatag tgccatccca aacaaggttt
    12601 ggggtttgga aaggtacata ttcattcatt atctatgttc tcctttacca aatggaatgt
    12661 gatataaatt cggctccgtg cctaatgccg ttttggtgcg ataaaccgga ttatttttca
    12721 ctttatggaa aatatcgcta cttggatcat tcatatcacc aaaggttaaa gctttagtcg
    12781 gacaagcctc tacacaagca ggctgtttgc cttctgcaag attggtatct cggcaaaagt
    12841 tacatttatc cgccgatttt ttctcagggt gaataaaacg tacacgatac gggcaaaccg
    12901 caatacagta ttggcaaccg acacacaaat ctgagtgtac atcaataatc ccggtttcag
    12961 gatcgataaa tgaagcaccg gtcgggcaaa cactcacaca aggtgcattg gtacagtgtt
    13021 ggcaagattg gcggaaaaac tcatattgta cgttcggaaa ctcaccgaaa ggctcactac
    13081 ggataatttc taaacgagaa accccttccg gcactttgtt ggtggtgcga caagcgtcca
    13141 tacaagccgt acagccgata caggcagttt catcatgaac catcgcatag cggattttct
    13201 tttgttcttt ctcagtagca agagttatgg aggtggcaag ccctgtactt gccacaactg
    13261 cgatagcacc tgcccctgag acgaaatctc tacgggtgca agtcattatt ttgttccttt
    13321 tgcttctgtg gctttcattt caggattttt aaattcgcct gaatgaattt tggtatgaca
    13381 atccgtacaa agtttaatgc gatctttttc aggaatgtct ttcatcggat ctttttccgg
    13441 gtgaatttca tgacagttgg tacaagcaat tttagttgcg tgcgtgtcgt gagcccagaa
    13501 tttttcacgc aatttctctg ccgtatggca agcaaaacag acttgatttt gctcatttac
    13561 cgaacgttca agtgatgggt tacttgcttt accgtgtggg ttaaaacgca ttacgtcttt
    13621 tgcccctttg cggtggcttt cagaaatatt accgtggcaa cttatacaag tgagtggctc
    13681 tccattattc gggcttttca catctttttg gaaatgtttg cctgcgtgat ggaaaggctt
    13741 acctgttgcg tttgccgatt cgtgacattg agtacaatat ttatttggat cacggcgtgc
    13801 atcttgagct acttttgcat catcagccgt ttctgattgc caaagaggtt ttggctgctc
    13861 aggcattaac gcattcgcac tggaaattgc aaaaaaacct gcaaatacga ccgcttgtat
    13921 gagggcgact gctcgtcctg cttttgagat taattttttc atagttcacc tcaagctaca
    13981 ttattttgct tctgcttttg gtgctgctac cggtttgtct gcttcttctg cgggtaataa
    14041 acctttagca cgagcttctt tttcccattg aggaaccaca gtttttaaga actcatcttt
    14101 tgctgcttgc tctttaggaa tatctaaacc aatagcaagt tgtgctttct ctttagttga
    14161 gatgtccgga atcgccactg gcgttgttac accgtgtttc gctaacacta cacctaattt
    14221 agcacgggca tctgctgcac ggtcgatacc tgttgcgatg gtacgtaaca ttacatcagg
    14281 tgcgtggaag tggttaccgt gacctgccgc agagtaatcc caacgccatt gagcgtgacg
    14341 aattgccatt aagatctctt tcatctcttc ttgagttgct ccagcttccc aagcagcttt
    14401 cgcttcaaag tgagctttca ctaattgatc ttctaagcga atcattgcct cttttacttc
    14461 gtgtttatac tcttttacac gtttttccaa tgtttctttg ctttgttcat gacaagtttt
    14521 acaagtcgct tcaaattggt caaacggatt accgattttg tggtcagtat aaactttgcc
    14581 gtctttgtct ttcacttttg gcatatggca atcaatacag gttacaccat ttttcccatg
    14641 tgtaccttgt gaccaaactt caaaatctgg gtgctgcgtt tttagcatcg gagctttcga
    14701 taaagcatga gtccagtctg taaaattgat ttcatcgtag tatttttcaa tgctatctac
    14761 atctacacct ttatcccaag ggaaagttac atctgtttta tttttgaaat agtactccac
    14821 atggcagtta gcgcacacag cagggcgttt accatgttta tctaaatcct caaacttcca
    14881 accaaccgta ttcaatgcac gtaatacgtg aggacgtgca acacgtagtg caggtttacc
    14941 ttgtttaaac tcttctgatg tcgtgtcatg gcagtctgca caacctattg agtttacaat
    15001 ttcagcacca tatttcgccc atttaggatc aaaatatcct cgctcacctt tctcctcaat
    15061 taagcgtgga acatcagggc ctttacatgt ccaacaagcc ataggttgtg gaccatcatt
    15121 ttcatcttta ggcgcgccgg tgcgcaaaat atcacgcaca tcggtaactg cataaaagtg
    15181 acctcgtggt ttattataat ctttcgcaaa agcatagcct gcccacaaaa taacataacg
    15241 agggtcagcc tctaacgcac ttcctcgatc tgtggatttt gcagttgact tccaagaatc
    15301 gtattgtagc ggatattttt ctgcaaatag gtggtttgca gactcaattt tcacgcctaa
    15361 tttttcatgc ttaactgctt tatctgttaa tgattcagtt ttcgcctctt cagctaaagc
    15421 agtttgtaaa caccccaata ttgaaattgt tgccacagct aggcttttta ttaaaaat
//
LOCUS       DANLXB010000048        15385 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLXB010000048 DANLXB010000000
VERSION     DANLXB010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15385
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            43..858
                     /locus_tag="PXD41_000964"
     CDS             43..858
                     /locus_tag="PXD41_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6288512.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
     gene            complement(920..1564)
                     /gene="adk"
                     /locus_tag="PXD41_000965"
     CDS             complement(920..1564)
                     /gene="adk"
                     /locus_tag="PXD41_000965"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL6288513.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(1676..3379)
                     /locus_tag="PXD41_000966"
     CDS             complement(1676..3379)
                     /locus_tag="PXD41_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6288514.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            complement(3414..3812)
                     /locus_tag="PXD41_000967"
     CDS             complement(3414..3812)
                     /locus_tag="PXD41_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6288515.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            complement(3840..4976)
                     /locus_tag="PXD41_000968"
     CDS             complement(3840..4976)
                     /locus_tag="PXD41_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6288516.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            complement(4973..5788)
                     /locus_tag="PXD41_000969"
     CDS             complement(4973..5788)
                     /locus_tag="PXD41_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6288517.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            complement(5788..6669)
                     /locus_tag="PXD41_000970"
     CDS             complement(5788..6669)
                     /locus_tag="PXD41_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288518.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            complement(6666..7334)
                     /locus_tag="PXD41_000971"
     CDS             complement(6666..7334)
                     /locus_tag="PXD41_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6288519.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            complement(7678..8961)
                     /locus_tag="PXD41_000972"
     CDS             complement(7678..8961)
                     /locus_tag="PXD41_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288520.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            9127..12843
                     /gene="metH"
                     /locus_tag="PXD41_000973"
     CDS             9127..12843
                     /gene="metH"
                     /locus_tag="PXD41_000973"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6288521.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            12951..14954
                     /locus_tag="PXD41_000974"
     CDS             12951..14954
                     /locus_tag="PXD41_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL6288522.1"
                     /translation="MIEKQNYHLVQLLKDSNYQLTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            15053..>15385
                     /locus_tag="PXD41_000975"
     CDS             15053..>15385
                     /locus_tag="PXD41_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6288523.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKA"
BASE COUNT         4807 a         3091 c         3279 g         4208 t
ORIGIN      
        1 ataataatga gtaggaattt tagatttaag gacacaaaaa taatgagcta taaagtggtc
       61 ttttcgctgt tgttttctct atttttatca acagcaaatg caaattggac aaaaattaat
      121 gatgtgaatt atacgtgggg gccatttaat atttaccata ttacgctttt tactgagagc
      181 ggtacttatg tagaaggtac acgtccttta atgcttactc tacaatataa aaaaccgtgg
      241 gaggggcgtg attttgcggt ttctttagca agaacttgga ataatttagg cattaagcta
      301 cctgaaaaag agttagatga ggttattacc cacctgagaa aaactttccc agatattaag
      361 cctgaagata cattgcacta tattgcatta gaagatagag gttattttat tttaaatgat
      421 aaagtagtct ctgatgtgtt taataaagct ttcaatgatg ctattgtagc aatttggctt
      481 gatccgaaaa tggatattag ccatcaatta cttgatccat cttataaacc gagagcagag
      541 gcagaaagta ttaagccaca agtagaggaa agagtagcgg aaaacttaca agaacctatc
      601 gtaaatactg aagtttctaa agagctgaaa gcggattctc aagcagtaga gcaagcacca
      661 aacaaaatag atatacctgt agcagataaa actcaagcta gtgtggtaaa tgaagcgact
      721 caaccggtag agaataaaga taagaaagag ccagaaaagc tagaagaaaa accaaaggag
      781 atgaagattg aaaatccgga agtgtttatt tcaccgattt atgatgatat cttaatgctc
      841 accaaatatt gtgtttaagc aaagaacaag cggtaatatt ctcgaaaaat attaccgctt
      901 gttcatttta ataatccatt taagataaaa ttttcgctaa ctcagcactt acttcttcca
      961 ctggttttgt tccatctaaa cgctcataac gagtgttgcc ggcttctgct tctgcggtgt
     1021 agtaggcgat taacggtttg gtttgtttgt ggtaaatcgc taaacgctct aataccgttt
     1081 caggtttgtc atcttggcgg ataattaaat cctcaccagt cacatcatct ttgccttcca
     1141 ctttcggtgg attgtacacc acgtggtaag tacgccctga aggttggtga acacgacgac
     1201 cactcatacg ctcaacaatg acttcatcag ctacatcaaa ctctaacact aaatcaattt
     1261 ttacacctga ctcttttaac gcatcagctt gcggaatggt gcgtgggaaa ccgtctaata
     1321 agaagccatt agcacaatcc ggttgagcaa tacgatcttt tactaaggcg accgttaatt
     1381 catccggcac taacttgcct tcgtccatca atgcttttgc ttgtttacca agctcagtgc
     1441 tttctttaat cgctgcacgg aacatatcgc cggttgaaat ttgcggaata ccgaatttgt
     1501 tcataataaa ctgagcttgc gtacctttgc ccgcacccgg cgcacctaat aaaatcactt
     1561 tcatttgaaa acctcaatta aactaaaaat aataaaatca cttaggcagt aaccttaccg
     1621 attactgcct aaaattgcaa atttttttaa ttttttgacc gcttgttata cggaattaga
     1681 attcatagcg taaatttaag cgtgtataga atggctcacc gtagctatat tggctaaagc
     1741 tgagggcgtt acgatatttt ttatcgaata agttatcaat gttaagctgt gctgagaagt
     1801 tgtcattaaa ttgataacga gccatcaaat tcactaaagt gtaagctttt tgaccatatt
     1861 cgccataagt agcgtgtttg gtataaattc tgctttgcca gtttacacct gctcctaccg
     1921 ttaaaccttg cactaaacgg ttcatatcgt aagttgcaaa gagtttaaat tgtttgcgtg
     1981 gttgagttgt gttaattggg ttacctgaag catcatcgcc tttccactga gtatatcctg
     2041 cactgagttt taatttttca gttacatttc cagatgcttc tacttcaaag cctcgaactt
     2101 tcgcaccttt agaggctgtg tagtaggcta ataatgtatt agggttaata ccggcagatt
     2161 gagctagatt atcttgtctt gtttcaaata cgctaatttg agtttgcaag ttgtcattga
     2221 aataactccc tttccaacct gcttcgtagg tttcgcccgt aacaggagag agtagtttgt
     2281 tattgatgtc cacttgactt tgtggtttga aaatatcggt ataacttaca taaacggtat
     2341 tttgtggatt aatatcaaag gttaatcctg cataaggtgt ccaaacatcg ttagcgtgga
     2401 agttttgtgt tgaaccatag aaagtgcctt ctgtgcggta cgatgaaata cgagaaccta
     2461 gaagcataga aagtctatct gtaagatgta aacgggtaga aacatacacc ccgaactctt
     2521 ttaagttttg gtagtatttt tcagacatac ttccccagtt tggtctagca taaatgccat
     2581 tccaattatt aaagtcgaaa gctccgtcaa aggtgctatt atcggcagcg taggaattac
     2641 gatgtgctcg attgtattga ataccgattg ccgcatcgtg ttctaatccc caagcagaga
     2701 atgaaccggt aagatcaagc tgcacattag attgtgtatt atcattttta aatttacccg
     2761 gccaaggcga ccaacctaat ccatcttggc gattaagtga tgagccgctg aaatagaaaa
     2821 gttctgaatt atgtttgcct acacggtaat tgccttttaa tgcaagttcc catttttcgc
     2881 ctagtttttg tgtaatatcg gcaaaatagt ttacggattc attatcccag taagcccatt
     2941 ccggactggc atttttgctt ctgctccagt tagtttcacc accgtcgcta tagaatgcgg
     3001 gtaaaccacc ccaaagtgct gcatcacgtt tttctttttg atagcttaca cctaacccaa
     3061 gtttggtagt gtcagttaag tctgcttcaa tattgccata aagcgtggtg taacgttctt
     3121 tttcattttt aatgaacgta ttaccgtttt tatgctctgc aataaagcgg cctcttactg
     3181 atcctgaatt attcaatgct tggctatggt caatcattgt attgaaatca gcataacgcc
     3241 cgattccagc ttctaaaata gtataacggg aaatgctatt ggctcgttta cgaacaagat
     3301 taacacttgc agaaggatcg cctgccccag tagttaagcc tgtagcacca cgcacaactt
     3361 ctactcggtc gtataacacg ctgttgcctg tattttcgcc cgttgtccat tggttattta
     3421 cttactttga gatccatacc atctaccttg actttatcaa tcccaaaacc acgagcactg
     3481 aaagaatagc gtcctctgtc aagtaaagaa acagaaacac cgtgagttgc ttcaagtgct
     3541 ttggcaatcg tattaagatt ttgatctctg atttgttgat gcgttacagc cgttacgctt
     3601 tgtggcgtgt ctttcgcact caatgccatt ccattagagc ctttggcttt tttctgtgca
     3661 taacgtccag tttcttccga tgaggcattt ggcgtttcgg cacttacttc tacggtatca
     3721 agatgagtaa ctgtttcagc gtaagctgtt gagataaacc ctataccaga actgtataag
     3781 gcaagtttta tcgctttaga tagcgtgttc ataatttctc ctaagtaatg aataaaaaat
     3841 tatttatgtt gtttgagtaa cagtaagaaa tagatacccc cgagaataga ggcaataatg
     3901 cctgccccaa tctcataagg gaaaattaga taacgcccga gccaatcggc aatgagcatt
     3961 agcattgccc ctaataatgc cgatataggg atctgtttct ccggtgtaat tgcacctaaa
     4021 tttttagcta aatgaggggt cattagccca atgaagctca ttggccctac cgcaagtgta
     4081 gaggcggcac tcattagggc aattaaaagt aatacaatca tttgtacttt tttaacctct
     4141 aaccctaaat ggtaagaaac ggtctcgcca agtgagatca aacgtaaagg tttgataaac
     4201 agtaaagtgg cactgataag taggattgca acagataata aaatccaaac tgtattcgga
     4261 ttagcgtaat aggttgagcc agacagccaa ctaataactg ccgttaaacg agggctgccg
     4321 cttagttgaa taatagccat taagccactg actaaagctc caatagcaac acctgtaatc
     4381 attaacgctg atggttgtaa tttacgagag agccacataa taagagcgag aacagtcaaa
     4441 ctccctaata caccaaataa caagaagcta atgctagata atgttgggaa aagtaagaat
     4501 gacagtactg cagcaatagt tgcccctgaa ctcacaccta atacttcagg gcttgccatt
     4561 gggtttctcg ttaagatttg taataggcta ccacttaccg caagcattgc ccctgttgct
     4621 atcgcactta gactacgagg caagcggtag gaactcatca ggttttcatc aatgctaata
     4681 gcccagccat tcattgttgg agcaatgatt tgtaatagac aaaataggat aactccagcg
     4741 cataacaaca atattggcag tttccacgaa ttgaggcgtt taacggggaa gtatgctgta
     4801 ttgcttgctt caaattgtgc tttacgttgg cgtaatacca agaaaattaa taatggtgcg
     4861 cctagtgttg cggtaaatgc accaacaggt agtagagtgt cgtaaattct gctaacaatg
     4921 ccgatgagat tattggtaaa aaagagtaaa aatccgcccg ctagaaaagc aatcaagagg
     4981 cgaagtaata aatgtcgtat tttggcaaaa tgagccaaac ttgcactgca aatccaataa
     5041 agccaatcac acctattttg cttacaacca atgctgtaat ggcggcacaa acaaaaataa
     5101 ctaagtagcg tagtaaatta acaggcgcgc ctaagcggcg agcttgttca tcatctaaac
     5161 ttaaaattgt gagtggacga gagagtaaga caaagataaa aaatgcaact actaccgtta
     5221 tcgctaaggt aatagaagtt gcccaaccat cttgtaaaag tgagccactt ccccaaacca
     5281 tcacgccaaa taaaaaatca aagtagaaaa gggtcagtaa agaggcaata gctccaaaca
     5341 aaatattaac aatcaatccc cctaaaataa gggtaagggg attgagctta gaggctttag
     5401 caataaataa aaccagtacg atagcagcta aagagccaag taacgcaatc cagaaactag
     5461 aaaaaagctc ggcggctggg aaaaagataa ccgcaatcat caatgcaagt tgagccccgc
     5521 tactgacggc aagtgtgcta tctgacgcta aattatttct gacaatatgt tgtaagccac
     5581 tgctggctat agccaataaa ccgcctgcta aaaatgacgt tgtcatttca ggtaaaagag
     5641 ctgcttttac cgcagcttga ttaattggca ataaatcaac atttatgagt agtaactgcc
     5701 attcccactc ccagaccata tttaaacgga taacagctgt tactaaggat aaaagaatac
     5761 agccaatcaa taagaatgat gatttcatta ctctttttct ccttgtgtca ttgcattgtg
     5821 taaaaactca gcaaagtgcg agatggaatc agccccacca aagagccaaa caggcggtaa
     5881 tactttcata caacggtttt taccaaatcc taaacgttgc caaatgtagc tattttctaa
     5941 atctgcttgc gtcattttag aaaaaggtga gatgacaatt aaacaggtgc gttcgggtaa
     6001 tttagctaaa tcactcacag gaataagttt atttccccag cgatctccca cacctaaatc
     6061 agcttgtttt aagcccatca aatcaaaggc tacacggaac attgaattag acgcatatat
     6121 gcgtaactct ctcggagagc caaattgaac aacagagtag taatcaatat ctggattact
     6181 gttaaggatt tctttccccc attgagccaa cgtttgttca gttttcgtta aatatgcttc
     6241 tgccgcatta gggtttttaa tctctgttcc aatcatacga gtggcttttt ggtaagtatg
     6301 ccaatgttgc tgaggttcag tattgccacc atcaaatagc acgtctattt gtggaatttc
     6361 tttcgggtaa acagaagcca agtgagcgta gaaaaagttt gatagcacca attcaacagg
     6421 aagctgtgct aataattcgc gattaggctg ataacgcgct ccaatatcta acacgctatt
     6481 aggctgaata gggcggtgcg accatagcgg ataaattcgc ttatccccca tcgcaatggg
     6541 cggatttccc atttcagtaa gggcagaggc aatagaccaa tctggtgtaa aaatattagg
     6601 ttgagcaaat gcggtagaaa tttgcaaaat aaagagaaaa atgaaccgct tgtattgcct
     6661 aaacatcata ataccgccac tttatgtaag cctgcagggt ggttaaacaa gtgcagtttt
     6721 agcccgaaga tctcaagtaa tttctgttct tgcataattt catcaacaga accttgaata
     6781 cagagttcgc cttgctttaa cgcaataatt tcatcacaaa attgggaggc aagattaata
     6841 tcgtgaataa tgataatgac agttagacct tgttcattca ctagcttgcg aataagctgc
     6901 attacttcaa cttgataaac aatatcaagg gcagccaatg gctcatctag cagtaaatag
     6961 ggtgtttgtt gggctaagca catagcaagc caaactcgtt gtttttctcc gcctgataga
     7021 ctatttacag gctgtttagc aaactgagta acggaggtgc tttccattgc ttgctcaaca
     7081 atttgaacat caaattctgt tggtttttgt agccattttt gatatggaaa tcgccctaaa
     7141 gcaaccagtt cctgcactaa gaaatccgcc gcttcaggta aacgttgtgg taaataggca
     7201 atatgttttg ccgcttcttt ggtagaaagc tgatgaagtg gtaatccatc gactaaaatt
     7261 gaaccgctgg taggcgttat atctccgctt agtaaacgca ttaacgttga tttacccgag
     7321 ccgttatgcg ccatataaac gccccttgct taaattgagg gaaatattgc ttagcagttt
     7381 acggttttgt tcaacagagt agctaatgga atttatttga atcatagtgt tgtgttttaa
     7441 gagcataaaa aaggtgggat taccccacca aatcaatcaa aatgaaaatg agtagatgaa
     7501 aatctattat gaaaacggtg ctaaatatat ttttattata aatgaaagtc aatatcattt
     7561 agttttaggt gagggtaaat tttaggataa ataaaaaata accgactaaa ttactaggta
     7621 attcaatcgg ttataagtgg tcggatattt aataaaaaat cttattttta tgaatagcta
     7681 ttcagcttgt ccccaaggag caaccttaaa caacattagc attcccggaa taccaataaa
     7741 gaaacagagc cagaagaatt ggtaatagcc catcatttcc actaaatgcc ctgtgtatgc
     7801 ccctaacatt ttgcttggta gggcagcaag gctggtgaaa atggcgagct gcattgcagt
     7861 gtaagcggga ttagtttcac gagccataaa ggcaacgaaa gccgctgtgc ctaaacccac
     7921 gcccagatat tcacctgcca tcactaagcc taatttccaa agctcggcag ctccaatgct
     7981 ttcggtaggg aaatgctcaa aactggcaag gtaagcgaag cctaaaatag taattaattg
     8041 tacaaatccg aacagccata aggctcggtt aacgcccaat ttcaacattg ccacgccacc
     8101 aataataccg ccgccaatgc tgcaccaaag tgaagttatt ttcacaatgc cggcaatgtg
     8161 cgatttagta aaacccatat ccaaaataaa tttggtttgt agcgtagttg caagggaatc
     8221 gcctaattta tataggaaaa taaatagaat cagcccaatc gctcctgcca cgcctttacg
     8281 ggtgaaaaac tctttgaacg gatcgacaaa cgccatataa aacggcttag aacggtcgat
     8341 tggcttatga ttcggctcgg cagcgattat tagcgtaacg aataagcaag gcactaaaaa
     8401 agcagcggta atcagaaata cggtatccca cgcatagtga tcggctaaaa ataatgaaag
     8461 cccacccgga atcagccctg caatacgata agcattaacg tggatagagt tacctaaccc
     8521 gagttcgtta tccgataaaa tttcacgccg aaaggcatcc accacaatgt cttgcgtggc
     8581 ggaaagaaaa gctaatagca cagaaagagt aacaataatt gaaatatctt gcactgggtt
     8641 gaacaagcca aagctggcta aaatcaccaa tagcccgatt tgtgaaatga aaatccagct
     8701 tttgcgtctg cctaaaaaag gtggaaagta gcgatctaac aatgcagccc acaggaattt
     8761 ccacgtgtag ggcaaagagg tcagggtgaa ggcggcaata gttttaatat ctaaattggc
     8821 actggttagc caagccggca ttagctgaat taacacaaac aacggtaaac cggaacaaaa
     8881 gccggtgtaa acacaaagca acatattttt agtaaaaatc tgttgccaga tagagcgttt
     8941 gggttcgtga caagcggtca tatttttcct acattttgca aaataaaaag gggaagaact
     9001 gagccaatat agcataattt taaaggcgac tctaaccctt tccatttcgt cacagataag
     9061 gtttgacagc cttgcgacat atttctatta ttccttttaa tcaaactaaa aaactggaag
     9121 cagagtatga acacgcagca tagaaccgaa ttacttcaaa atgcccttac cgaacgcatt
     9181 cttatcttag acggtgcgat gggaacgatg atccaaaaat ataaactaac cgaatctgat
     9241 ttccgaggtg aacgttttaa aaacagtacc atcgatctta aaggcaataa cgacctactc
     9301 acactcaccc agccactcct gatttctgct attcacgaga aatatttagc cgccggtgcg
     9361 gatattatcg aaactaatac ctttagtgcg acgaccattg ctcaagcaga ttatgaactt
     9421 gaaagtattg cttatgagct gaatcttgtg ggggcaaaac ttgcccgtct tgccgccgat
     9481 aaattctcca tccctgaaaa acctcgtttt gttgccggta ttcttgggcc gactaaccgt
     9541 acttgttcga tttcccctga tgttaatgac cccggtttcc gtaacattac ctttatgcaa
     9601 ctggtggaag cctatgccga ggcaacccgt ggtttgattg aaggtggggc ggatctgatt
     9661 atgatcgaaa ccattttcga taccctgaat gccaaagcgg cggtgtttgc aattgaaacg
     9721 gtgtttgatg aactgggcgt gaaattgccg ataatgatct ccggcaccat taccgatgcc
     9781 tcagggcgaa cgctgtcagg gcagaccacg gaggcgtttt ataactcgct ccgccacgcc
     9841 aaaccgctga cgttcggctt gaactgtgcg ctcgggccga aggaactccg cccttatgta
     9901 gagatgatgt cgaaaatcag tgagactttt gtttcggttc acccgaatgc cggcttgcca
     9961 aacgcttttg gcgggtacga tttaggggcg gaagagatgg cgacttacat caaagagtgg
    10021 gcagaactcg gctggctgaa tattgtcggc ggctgttgtg gcaccacgcc ggagcatatc
    10081 caagcctttg ccgaagcaac caaaggcgtt gcgcctcgta aattacctga aattccaacc
    10141 gctatgcgtt tgtcgggctt agaaccgctg acgattgacg ataattcgct gtttgtgaat
    10201 gtgggcgaac gcaataacgt caccggttcg gcaaaattta agaagctgat taaagaagaa
    10261 aaatttgcgg aagcgattga aattgccatc agccaagtgg aaaacggggc gcaggtgatt
    10321 gacgtgaata tggacgaggc gttgctcgat tccaaaaaat gtatgacccg tttcctcaac
    10381 attcttgcta ccgaacctga ggcggcaaaa gtgccgatta tgattgactc ctcgaaatgg
    10441 gaggtgatcg aggcgggctt gcaaacggtg cagggcaagc cgatagtgaa ctccatttca
    10501 ctcaaagagg gcgaagagaa atttattcac caagccaaac tctgccgccg ctatggggct
    10561 gcggtggtgg tgatggcatt tgacgaagtc gggcaagcgg ataccgaaga acgcaaggta
    10621 gaaatttgta cccgagctta tcggattttg gttgatcagc tcggcttccc accggaagac
    10681 attattttcg acccgaacat ttttgcgatt gccaccggta ttgaagaaca caataactac
    10741 ggcgtggatt ttatccaagc ctgtgagcgg attaaacgag acttgccaca cgccaaaatt
    10801 tccggcgggg tgtcgaatgt ctctttctct ttccgaggca acaatgtggt gcgtgaggct
    10861 attcacgccg tgttcctcta ctatgcgatc aaagccggaa tggatatggg gatcgtgaac
    10921 gcagggcagt tggcgattta tgacgacctc gaccctgaac tgcgagaggc gattgaagat
    10981 gcggtgctga accaccgtca tgacactacc gaccgcctgt tggaaatttc cgaaaaatat
    11041 cggggcgtaa aagtagaaag tgccgatgaa agtgccgccg agtggcgaaa tttacctgtg
    11101 gcagagcgtt taaaacacgc cctcgtaaaa ggcataacga cctacattat tgaagatacc
    11161 gaagaggctc gccagcaatt tgcctctccg ctggaagtga ttgaagggcc gctcatggcg
    11221 ggtatggacg tggtgggcga cctgttcgga gacggcaaaa tgttcctgcc gcaagtggtg
    11281 aaatcggctc gggtaatgaa acagtccgtt gcctatttag agccgtacat caacgccacc
    11341 aagcagaaag gatcgagcaa cggcaaaatg gtgatcgcca ccgtgaaagg tgatgtacac
    11401 gacatcggca aaaacatcgt tagcgtggtg ttgcagtgca ataactttga agtgatagac
    11461 ttaggcgtga tggtgcctgc cgatgtaatt atcgaaactg ctattcggga gaaagccgat
    11521 ctcattgggt taagcggact aattacccca tcgctggacg aaatggagta ttttttaggt
    11581 gaaatgaacc gcttgaagct cgatattccg gtgctgattg gcggcgcaac gacctcaaaa
    11641 gagcatacgg cgatcaaact ttatccgaaa tataactacc ccgtagtcta taccgccaac
    11701 gcttcacgtt gcgtaaccgt ctgtgcgacc ttgatgaacc ctgaggcaaa agccgaattt
    11761 tgggaaaaaa ccaaagccga atacgaagaa attcagcgta aatttgccgt tcgcaaacca
    11821 cttcgcaacg gtttatctat tgaggaggct cgagccaatc gttttgacgg atttagtggc
    11881 gaatgggcag actatgtgcc gccaacgcca aaacagaccg gcattatcga gtacaaaaat
    11941 gtaccgattg ccaccctacg caaatttatc gactggtcgc cgttctttat gctctggggc
    12001 ttaatgggcg gttatcctga tgcctttgat tatccggaag gcggcgaaga ggcacgccgt
    12061 gtctataacg atgcccaacg ggtgctggac gaatttgagc aaaacggcaa gctcaaccca
    12121 agtgggatta tgggcatttt ccctgccgtg cgtgagggcg atgatattgc aattttaaac
    12181 gaagatcgca ccgcttgtat cggcaaatcc taccacctcc gccaacaatc cgaacgaggc
    12241 aaaaacagca aaagcccgta caacctctgt ttaagcgatt ttatcgccga ccgagaaagc
    12301 ggacaacaag actggttcgg aatgttcgcc gtttgtgccg gcattgaaga acactattta
    12361 gttgaaagct acaaagcggc aggcgatgac tacaacgcca ttttgctcca agccgttggc
    12421 gaccgcttgg cagaagcaat ggcggaatac ctacactttg agctacgtac caaagtctgg
    12481 ggctacaccg tggaagacga agacaacgga cgcttaatcc gtgaagaata catcggcatc
    12541 cgccctgcgc ccggctaccc aagctgcccg gaacacaccg agaaacagat aatttgggac
    12601 ttgttagagg tggaacaacg catcggcatg aaactcaccg aaagctatgc catgtggccg
    12661 gcagcaagtg tctgcggctg gtacttcacc caccctacca gcaactactt cactctcggc
    12721 aagattgatg aagatcaggt gttggattac gccaaacgca aaggctggga cgaactcacg
    12781 gcgaagaaat ggttaagtgt ggcgatgaaa caagatgtca agtcgcaggc tgaaaacatt
    12841 taatgtagtg gcgggtttta acccgcctgt tacaagcggt tggttttgag ataaaatatg
    12901 caaaatttat ctctctttta tgcaaagaag ttatcatcga gaacaaaaca atgattgaaa
    12961 aacaaaatta tcacttagta caacttttaa aagacagtaa ttatcaatta actcaatttt
    13021 ctcctgcgta tataaaaaaa ttagaggaat ctattttcct caaatcaggg aaaaatggag
    13081 atattcctca tattcaatgt cttgttcgta aaaaggatat taagctcaca cctgaagaag
    13141 cagtacgcca actctattta atgaatttgc attatgaata tgattatcca tttgaacgaa
    13201 tggaattaga atattctgtt gtattcgggc gtgagaagaa acgagcggat attgtcatct
    13261 ttgatagaga taatcctaac gctgtctata ttatggtgga gctgaaaaag ccgaaattaa
    13321 aagatggtaa agaacaatta aaatcttatt gtaatgcgac tggagcacct attggtgtat
    13381 ggacaaatgg cgaaagtatt tcttactata atcgccgtga tcctaattat tttaaagata
    13441 ttcccgatat tccgaatgct caacaaaaac tttctgattt attacaagaa cgttggacta
    13501 ttcaagatct gatagataat gacaaaattg ccaaacaacg taaatcattg aaagatcttg
    13561 ttattgaaat ggaagatgag gtactggcga atgctggagt tgatgttttt gaagagttat
    13621 ttcaacttat ttttactaaa ctctatgatg aaatggaaag tacacgcaat aaaagtcgtt
    13681 atttagagtt tcgtaactat ggtgataccg aaagtgaatt aaaggcaaaa attcaatctc
    13741 tatttgatcg tgcaaaaaat aaatgggaag gcgtatttgc tgaaagtgcc aaaatcaacc
    13801 tttccccttc gcatttggcg atttgtgtat cttcattgga agaagtaaag ctgtttaatt
    13861 ctaaccttga tgtagtggat gaagcatttg agtacttaat taataaatcc agtaaaggag
    13921 agaaaggaca atactttacg cctcgttacg tcattgatat gtgcgtaaaa atgctcgatc
    13981 caaaacctga agaaacagtc attgataccg cagcaggaag ctgtggtttt ccagttcatt
    14041 ctatttttca cgtttgggaa aaacaactta aagcgagagg attagaacgc tcacacttat
    14101 ttactgctga agaaaaattg cctgaacaaa cagattatgt gaaagaaaaa gtctttgcga
    14161 ttgatttcga tgaaaaggca gtacgtgttg ctcgtaccct aaacttaatc gcaggagatg
    14221 ggcaaaccaa cgtactacat ttaaatacct tagattatga acgttgggaa gattttacta
    14281 aggaagaaga atggaatgat gtatatggag aaggctggaa aaaattaaga aaattacgta
    14341 aaactaaaaa tgaaaatcga gatttccaat ttgatgtgct aatggcaaat ccgccttttg
    14401 ccggtgatat taaagaaact cgtatattag ctcgctatga attaggcaaa aatagcaaag
    14461 gaaaacagca atccaaagtc ggacgagata ttttatttat tgaacgcaat ttagatttct
    14521 taaaagacgg tggacgaatg gcgattgtgc taccacaagg gcgttttaac aattccagcg
    14581 ataaatatat tcgtgatttt attgcagagc gttgccgcat tttagctgtt gtgggcttac
    14641 acggaaatgt gtttaaacca cataccggca caaaaacttc cgtactattt gtgcaaaaat
    14701 ggcacgatga actttgcccg aaagtagagg attacccgat tttctttgcc acaatgcaga
    14761 aatccagcaa agataattca ggcgataaaa tctatgttaa aaacgctgat ggcacactca
    14821 aattagacaa ccatcaacac ctaattgtgg agcacgatct atttaatcac gataatagta
    14881 cccaagacgg cattgcagaa gcctttattg aatttgctaa aaaagaaaag ctctcttttg
    14941 tgggaaagga ttaagcccat ttgaccctgc taaatatcag gcattgttag atgggctaga
    15001 ggtgagcgag gtttatttga gtaaggttcg ttctgcaagt tattcggaac gaatggatag
    15061 tactttcttt ttgaaaaaat acttaaacca tccgagtttt aattttccat tatcgctgaa
    15121 tgaggtttct ctgattaaaa gtggtacaac accaacagat cgagatgata acttaaaaga
    15181 gggggttgtc ttattaaaaa ccaatgatat taggaataat ctattaaata agtactcttc
    15241 ggtagattat tttattagcg aagatatcaa tgagaaaatg atttcatcac aactgaaaga
    15301 aggggatgtt ttagtaaata tcgttggtgc aactttggag gttgttggtc gggtagctta
    15361 tgttagtagc acttttccaa aagca
//
LOCUS       DANLXB010000049        15376 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLXB010000049 DANLXB010000000
VERSION     DANLXB010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15376
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            62..910
                     /locus_tag="PXD41_000976"
     CDS             62..910
                     /locus_tag="PXD41_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6288524.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            998..1816
                     /locus_tag="PXD41_000977"
     CDS             998..1816
                     /locus_tag="PXD41_000977"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL6288525.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            1819..3510
                     /gene="narQ"
                     /locus_tag="PXD41_000978"
     CDS             1819..3510
                     /gene="narQ"
                     /locus_tag="PXD41_000978"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL6288526.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            3561..4079
                     /locus_tag="PXD41_000979"
     CDS             3561..4079
                     /locus_tag="PXD41_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6288527.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            4122..4721
                     /gene="rdgB"
                     /locus_tag="PXD41_000980"
     CDS             4122..4721
                     /gene="rdgB"
                     /locus_tag="PXD41_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL6288528.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            4718..5038
                     /locus_tag="PXD41_000981"
     CDS             4718..5038
                     /locus_tag="PXD41_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL6288529.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            5042..5494
                     /locus_tag="PXD41_000982"
     CDS             5042..5494
                     /locus_tag="PXD41_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL6288530.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(5535..6116)
                     /gene="lpcA"
                     /locus_tag="PXD41_000983"
     CDS             complement(5535..6116)
                     /gene="lpcA"
                     /locus_tag="PXD41_000983"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL6288531.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            6425..7384
                     /locus_tag="PXD41_000984"
     CDS             6425..7384
                     /locus_tag="PXD41_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL6288532.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            7377..9128
                     /locus_tag="PXD41_000985"
     CDS             7377..9128
                     /locus_tag="PXD41_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288533.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            9131..10096
                     /locus_tag="PXD41_000986"
     CDS             9131..10096
                     /locus_tag="PXD41_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6288534.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            10083..10976
                     /locus_tag="PXD41_000987"
     CDS             10083..10976
                     /locus_tag="PXD41_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6288535.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            11047..12099
                     /locus_tag="PXD41_000988"
     CDS             11047..12099
                     /locus_tag="PXD41_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6288536.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(12108..12338)
                     /locus_tag="PXD41_000989"
     CDS             complement(12108..12338)
                     /locus_tag="PXD41_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL6288537.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            12468..13550
                     /gene="leuB"
                     /locus_tag="PXD41_000990"
     CDS             12468..13550
                     /gene="leuB"
                     /locus_tag="PXD41_000990"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL6288538.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(13637..14032)
                     /gene="msrB"
                     /locus_tag="PXD41_000991"
     CDS             complement(13637..14032)
                     /gene="msrB"
                     /locus_tag="PXD41_000991"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL6288539.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            14257..15261
                     /gene="gap"
                     /locus_tag="PXD41_000992"
     CDS             14257..15261
                     /gene="gap"
                     /locus_tag="PXD41_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL6288540.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         4838 a         2631 c         3277 g         4630 t
ORIGIN      
        1 ctttaatagg ttgtgaagct atttttttat acagattact ataaggaaac ttaatatgaa
       61 aatggaaaaa aaagcccttt tccgtggatt tttattatcg acagtggcat tagcagtggc
      121 tgcttgtggt aacttaagta aagtgagtga tgaaggaaca actgaaaacc cggtattccc
      181 gaaaatctca gaatctgaat ttaaccacga tggttcacaa tttggttcat ggccaaactg
      241 ggaaaacgtt cgtcaaattg aaaaagggat gaacaaagat caattatata atctaattgg
      301 tcgtcctcat tttgaagaag gcttatatgg tgttcgtgaa tgggactatg cattcaatta
      361 ccgtgaaaat ggcgtacata aaatttgcca atttaaaatt ttattcgata aaaatatgaa
      421 tgcacaaagt ttcttctggt atccaaatgg atgtaatgga aactcatcat ttgctttaac
      481 tggcgatttc ttattcgatt tcgataaagc gactttaact acaaaaggta aagaagttgt
      541 tgataatgtt gctcaacaat taaaagcatc taaagcacaa caagttaaag tagcaggcta
      601 tacagaccgt ttaggctctg ctgcttataa cttagactta tcacagcgtc gttctaatac
      661 agttaaagct cgtttagtac aacaaggcgt tacagcacaa attgaagcgg taggttatgg
      721 taaagcgaat caagtaaaag cttgtgatgg tgaaactggt caagcattaa aagattgttt
      781 acgccctaac cgtcgtgttg aaatttctgc aaattgtggt gtaatgaaac aaaatgaagg
      841 tggcaatgtt gcaggtccta atggtccggc tccactttat caaaccccag catatgatgg
      901 cagtaaataa tttctagttt tgactaactt agagtagaat attaaggcaa ccaaatggtt
      961 gccttttctt ttatctattt atttataggg gaatactatg aactaccaag ctattgcatt
     1021 tgatttagac ggaacactac tttcatcgaa cgcaacaatt ttagaatcca gtaaagaggc
     1081 tattaaaaag gtaagagaaa agggaattaa agtctacttt gttaccggta ggcaccatac
     1141 tgcggttcgc ccttattatg tagaactagg gctggatacg ccagttgtgt gttgcaatgg
     1201 cacttatgtg tatgatttta aaaatgaaaa agtattaagc ggtaatccgt tatcagcaga
     1261 aattgcttca aaattagtta atgatgcaca agctcaaggg attcatactg cggtttattt
     1321 tgaagatgca atgacttatg agtctttgaa tattcacttc actaaattcc aaaaatgggt
     1381 tgagtcttgc gcaccagaag ttcgtccgaa tgtttatcag gtagaaaatt tccaacaaga
     1441 aattgataaa ggtgtaaccg tatggaaagt gcttattagc gatccagatc ttgccaaaat
     1501 gcaaaaattt gttgaaaaat taccgcctga tcaagtaagc ccggaatggt cttgggttga
     1561 tagggttgat attaccagtg ttggtaacag caaaggggca agattagcgg aagtattaaa
     1621 aacagaaggt attgatttac aaaaggtgat tgcctttggc gataatttca atgatgtttc
     1681 tatgctagaa accgttggat taggcattgc aatgggaaat tcagaaccag atattcagca
     1741 aaaagcgaag aaaactatag gttcaaataa tgaagatagt attgctaatg aattgaaagc
     1801 tcaatttaat ctttaattat gataaaagca aaatactcta ttgctaggcg gataggactc
     1861 tattttttaa ttatgatcgg atttgcttcg attatcagtg gaatctcact tggtattatg
     1921 tggagcaata aatctgatgc gagcctgatt aatgtttcag gctcacttcg tatgcaaagt
     1981 tatcgattgt tatcagaaat ggattcaaaa aaagcgctgc tacctgagcg attgttggaa
     2041 tatcatcgaa cgctacatgc tacagagctt agttcattaa agcaaagtgt tttattgcca
     2101 gatagcgtga tagaaagcta tcaacaatta cttaaagatt ggtatgaaat gcaatcttat
     2161 gtcgctcagg gagataaagt taattatgct tcgcacattg aagattatgt gcagagagtt
     2221 gatgattttg ttttccgctt acaagagttc gctgagttaa aattaaagat tgcaacaggc
     2281 gtgattgcga ttgcaatgtt actgattatt gcccttgctt atattggcgt ttggtatact
     2341 cgaaaaaaga ttattggacc tttaaggcaa ttggtaaaag cgagttggca aattcaaaat
     2401 aaagattttg accacgtaaa attagcggtt aatgaaccca atgaattagg gctactttcc
     2461 tctactttta ctgagatgtc taatgaatta ttaaaattat atacttcatt agaagataaa
     2521 gttcaggata aaacacgtcg tttattggcg gtaaatcgtt ctttactggt attatatcaa
     2581 tgctctcaat tattaactgc taagccgatt aataaagaag tgttaaatca agtacttaaa
     2641 acggtatttg ataatgaaca tttgctaggg attgatttac aagtatatgg ggctgaatat
     2701 tggaatgtat caatagacaa taaaccaagt ttagattggg tttctgctga aattgcaata
     2761 gaaaatgaaa aattgggtat cttaagctgg aaaccctcac tggtttgtcc tggtgaacga
     2821 ttgatccaaa atgtgtcgga aatgattggt cgtagccttt atgtagtgca gatgcaaaag
     2881 caacagcaac aattggtact catggaggag cgtgcaatta ttgctcgtga gttacacgat
     2941 tccttagccc aatctcttac gtttttcaaa attcaggtta gcctgcttaa gcttgctaaa
     3001 acagatgaaa agcgtaatga aattttaact gtatttgaaa aagcgttaaa tgatgcttac
     3061 agccaattaa gggagctgtt gacgacgttt aggctaacga ttcaagaagc gaatttacaa
     3121 caagcgttag aaaaaatttt agaaagctta agaccgaaaa cctcagcaca gattcgctta
     3181 agttgcaaat taccttcgca tatgtttaat gctcagcagc aagttcacgt attgcaaatt
     3241 gtacgagaag ctgtgattaa tgctattaag cattcgcaag ccactgaaat taatgtgatt
     3301 gctgaaacaa atgatgatgg tgaacattgt ttgactattc aagataatgg cgtagggctt
     3361 gctgcccata cgcaaccaga agggcattat ggactgacga ttatgcaaga acgggcggct
     3421 gaactcaaag ccgaattttc gattgaaaat gtggaaagtg gcggagtaaa agtacaggtt
     3481 ttattgccga gtatgattag caagcggtaa taaaatatta attttttgcg tattattggc
     3541 aacgaataaa aggataacaa atgcaattcc gaaaagcagt agaagcggat tttgagacaa
     3601 tattggcaat ttataatcaa gcaattccca ctcaccaaat taccgccgat ttagaactgg
     3661 caactacgca aaatcggcgg aagtggttcg attttcacct tgaaacagcc caatatccta
     3721 tttgggtggt cgaagatgaa aaaggcattg ctggctggtt tagtttttca ccattttatg
     3781 aaagaccggc atttttacat acttcggaaa tcagtatcta tttagaccgc tattccaaag
     3841 gaaaaggcta tggctcaaaa attattgagt ttatgcaagc tgaaatgctt aatcacaata
     3901 ttcatacgtt gatggcgtat gtgtttgaat taaatacagt gagccaaaat ctaatgagaa
     3961 aacacggctt tgaacaatgg ggaagatttc cgaatattgc taatatggga aaagatgaga
     4021 aaggtgagga taaatggcga acgttgctga tgatgtctta ccaaaaaggt atcgaataac
     4081 aagcggtgat tttttagaat atttttgcaa ataaggacaa tatggaaaag acaaaaattg
     4141 tacttgcaac aagtaatgca gataaagtta aagaaatggc agatgtactc tcacaatttg
     4201 gttttgaggt ggtggctcaa agtgaatttg ggattgaatc accggaagaa accggtttga
     4261 cttttgttga aaatgcgctg attaaagcac gatttgctgc taaaatgaca ggtttaccgg
     4321 cgattgccga tgattcaggt ttatcggtta tggcacttgg tggtgaaccg gggctatatt
     4381 ctgcacgtta tgccggagag caggcaaccg atgccgataa tcgccaaaaa ttactagcca
     4441 aaatgcaagg gcaagagaat cgtctggcga aatttgtcag ttgtatcgtg tttttaaaac
     4501 acgaaactga cccaacacct tatattgcgt cgggtgaatg tttcggtgaa attttgacgg
     4561 aagaaagagg tgaaaatggt ttcggctacg attccctgtt tttctaccca ccgaaagctt
     4621 gcacttttgc cgaattagaa accaaagaga aaaaagcgat ttcacaccgt gcaatcgcac
     4681 tagagcaatt aaaacagcaa ttagcaggag agaataaatg attattacaa ctacacctac
     4741 gatagagggt aaacaaattg tagaatacaa agggttagta tttggcgaag tagtttctgg
     4801 ggctaatttt atccgtgatt tcttagccgg tatcaccgat attattggcg gacgttcagg
     4861 tgcttatgaa agcaaattaa acggtgcaag aaaagaggca ttagctgaat tagctaagga
     4921 ggcacaaaaa gtgggggcaa atgcggtggt tggcgtttct atggagtatc aatcaatggg
     4981 cggcgataaa ggaatgttca tcgtggtagc gactggtact gcggttgtaa tacgttaatt
     5041 tatgcagttt gaacaacact ttgaagcaaa tttctggcag aacaaatcgc tacttgaaat
     5101 gaatgatgct gaatgggaag cattatgtga cggttgtggt aagtgctgct accggaaata
     5161 tattcaggga agagggcggc gtgaacggct ttactatacc tcggttgcct gtaatttatt
     5221 agatgtgaat acaggccgtt gtatgaatta ctcgaaccgt tttaaaattg agtcggattg
     5281 tacaaaatta actaaaaaga acttacctga ttttggctgg ttgccaaaaa cctgtgctta
     5341 tcgtttactt tatgaaggaa agcctctttt tgattggcac cctttaatct ctaaagatcc
     5401 tgattctgta aaaaatgccg gaatgctgat tgctaacggt attcacgaaa aagatgtgat
     5461 tgattggttt gagtttgtta ttgatgaagt atgagaaaaa ggcgtttggt gcaaacgcct
     5521 ttttgttata gagattaggc tttttccatc tcaaattcaa ttaacatcat caaaatatga
     5581 atcactttaa tgtgaatttc ttggatgcgg tctgcgtaac ggaaatgagg tactcggatt
     5641 tccacatcgg ctaatcctgc catttgcccg ccatctttgc cggtcattgc aattactttc
     5701 atgccttttt ctttggcaac tttgatcgca tttaacacat ttttagagtt accagaggtt
     5761 gatagaccaa agagtacatc gcctttttgc ccaacggcct ctagataacg agagaagaca
     5821 tattcataac cgaagtcatt acttacacag cttaaatggc tgacatcgga aatagcgatt
     5881 gccgggtatc cgggacggtt ttcacggtaa cgacctgtta attcttcggc aaagtgcatc
     5941 gcatcacagt gcgaaccgcc attaccgcaa gaaatcacct taccaccttg cttgaaacta
     6001 tttgcaatca gcatggcggc atcttgaatt aatttaatat ttttttcatc agacataaat
     6061 ttgtctaata catctgcagc ttcttgaagc tcagctttaa tttgttctaa atacatcatt
     6121 tgctcctttg tttgcaaaac gcttaccttt aaacatcggc tttaccaatg ggggtagcga
     6181 gtaaaaaatt cgttttttat gaccgcttga ggcataaaaa gtgcaataag tttagaagat
     6241 ctatgctgta ttgtaaacct aataacttaa ataatctgaa tagggttgta aacaaaagtt
     6301 tccaaaagag aaaaatagcg gtatgatcgc ctcacaatcc ctctcgcatt gttaactcta
     6361 gtagctaata tcaggcttta agcgtattaa acaatgcaca aatttgctat ttataggaga
     6421 ctatatggtc gtaaatccag aatcttttga acagataatt ggacaatctg taaagataaa
     6481 agaggttgtt gaacaagcaa aaaaatttgc caaccttgat gcaccattat tgattcaagg
     6541 tgagacggga acaggaaaag atttatttgc caaatcttgt caccattttg gatctcgtcg
     6601 aatgcaaaaa tttattgccg tgaactgtgc cggtttaccg gctgaagaag cagaatcgga
     6661 aatgttcgga catcgtggca atggcgttga gtccgtcggt ttctttgaat atgctcacgg
     6721 tggtacagta ttattagact ctatttctga gttatcgctg gaaatgcaag ccaaattatt
     6781 gcgcttttta aatgatggct cttttcgtcg agtgggcgaa gatcaagaga ttcaagtcaa
     6841 tgttagggtg atctgtactt cattacagcc tttgtcatta ttagttgaaa aaggcaaagt
     6901 aagagaagat ctgtttcatc gtttaaatgt tctcacttta aatttaccac ctttgcgaga
     6961 tcgaaaagag gatattccat tattagctga ttactttatc gcccaaatta gcaatcagtt
     7021 gggggtgagc aaattagagt atgataatgt ttttttgcaa gcattgcaga attatcactg
     7081 gcgaggcaac ttaagagagc tttataacgc actttatcga gcttgtacac tttcgcatag
     7141 ctaccgttta gcggtaaaag atcttcattt acccagagat atggaggcga tgattgaagt
     7201 acgtgaggag gcgacacttg aggaaatgat gagccagtat gaagcccaat tattgcacca
     7261 attttatgca gaatatccga gtacccgaaa attagcacaa cggctcggac tttcacatac
     7321 tgcggtggca aacaaattgc gtcaatatgg gttaacaaaa aatggaaaca gtaaagatga
     7381 ataaactagc ggtcattttt tcagtatgtt ttgcaaattt agggctaaat tcgaccgctt
     7441 acgcagcgcc aagtattcct caagagctac ttgaaaatag ccttgtgtat tgcactactt
     7501 catcgggatt ctcttttaac ccacaaaaat ccgatgtgag ttcgaatatg aatgtggtaa
     7561 cagagcagat ctacgataaa ttagttgagt ttaatccgaa aaaaaatcga ctagagcctg
     7621 ctttagctga aagttattca atcagcgacg atggtttagt gattacatta cgtttaagaa
     7681 aaaatgtcgc ttttcataca actccatggt ttactccgag tcgtaaatta aacgcagaag
     7741 atgtggtgtt ttcgctaaaa cgaatgattg gtaaagaaag tgatttacct gaagtgaaaa
     7801 gtgagcctga aagtgtatta caccaccagc gacaaagcta tatttaccaa aaaacagcgg
     7861 ggcagattta ttttccttat tttgaaagtg ttgatttagc gaataaaatt gccagcattc
     7921 attctccgtc aaatgacatt gtaaaaattg aattagtccg tcctgattca gcattgttgg
     7981 cgcatttagc cagccaatat gcagttattc tgtctaaaga atatgcttta cagctcaatg
     8041 cagatgataa cttagttcaa ctggatttat taccggtagg aacaggcgta tatcaacttg
     8101 aaagttatga aaataatgat tatgtgcgtt taaaaccaaa tatgaattac tggggcaaaa
     8161 aagcatatat tcaaaatatg gtcgtagatt tttccacaga agcgaccggc aggatggcaa
     8221 aatttttaaa taatgaatgt gatgtggttg cttttccgga acctagccaa ttatcagtgt
     8281 taaataatcg gcagcttatt agtagtaaag gtgctaattt ggtttattta gcattcaata
     8341 tgcaacgggg tattgggcag gatttggcat tacgccaacg tattgcacgc ggcataaatc
     8401 gcaaacgtat tgcagagaaa ttattttatg gtacaggtga agtagcggat aacctattac
     8461 caacagcttt gtggtcgaaa aaaaataatg gaagctaccc ttatcaacca caccaaaatt
     8521 caggtgagca agcggttgaa atgcatgaca gtattataaa tcggtcttta gatagcaaaa
     8581 cagagaccga agaagtaaac caaaaacagc gcttaaaact gtgggtaatt gatgaaaaac
     8641 gagtttataa tcaacaccca ttaaaaatgg cagaaatgat acgtgctgat ttagctacgc
     8701 aaaatttaga ggtcgaaatt cgcgcagtaa gtcgagctta tttggtgcaa cagcttgcta
     8761 ataaaagtgc ggattatgat ttgattttag gtggttggtt agcaaataat cttgatccta
     8821 acagtttttt ggaggcctta ctcagttgta aagctgcgga aacggtgact aatttatcaa
     8881 attggtgcaa tgaagatttt gatttttggt tacaaacagc ccgtctaagt gatgatccgg
     8941 catcagctaa tttattgtat gaatttgcac aaaaattatt agaagagcaa ttgcctattc
     9001 tccctttaat gaatgctaat cgtgtattag tcataaaaga tggagtgaaa caggcagata
     9061 tttccccttt cggccaggta aaattatcag agttacgttt gggcttgggg cataaaaaag
     9121 gaaactaatt atgctgattg tcttttttcg aaaaattttt ctaaccttga ttacgttgat
     9181 ttttttgtca cttatcagtt ttaatattct gttacgagat ccattaaacc acttagccga
     9241 gttaggctgg tttgaggctt attgttatta tgtaaaatct ctgctaaatg gtgattttgg
     9301 tattagtttc agtaatggag aaccgctcac agcgcaaatt ttacaggtgt tcccggctac
     9361 aattacgctt tgtttatcgg ctctcattgt ttctttaatt attggtttgc ctcttggttt
     9421 ttttgcggct actcagcaaa aaaatatggt tgggcgatta ttaaatacac taggttcatt
     9481 gagtttagcc gtgccggtat tttggctggc attagtgcta atgtattacg cttctctcaa
     9541 tcagtgggaa gtgtcagcaa ttggagaaat ccattcgctt tatccgaaac agatggtaac
     9601 cggctttttg ctattagata tttggttatc tgatgtacct tataaattaa aaatgatgca
     9661 gagtgcttta catcacttag ctttgccgac attagtcttg gctgtgccag ctacattaga
     9721 agttatgcat attactcaag ctagagcagg ttatgtaatg aaacaaaatt acattaaaat
     9781 agcgaaaacg cgtggctgga caccgtttag agtttggaga acgcatatta tttgtaatac
     9841 tttacctgca ttattaccta tgattgcccg tacctttatt ttaatttttg ccttcggtat
     9901 gttaattgag aacatattta gctggggagg aattggacgt tggctgataa atgcccttgc
     9961 tattcaagac tataatgcga tttcagcggg agtagttgca atcggggtgt ttgtgttatt
    10021 agtagatatg gttacaggct ttgtgcgggt gatgttagac ccatcagata aaaaggattg
    10081 gtatggcagt tattaaagaa cccgagcaat ttagagaaac caacgcattt aaggcatttt
    10141 ggtttcattt ccgacaagat aaacttgcac ttggcagttt ttatcttttt ttgctattac
    10201 tggctctcat ttttgttggt agtttgcttg ctccttacaa ttataatgaa caatttgttg
    10261 gtttagaatt aatgcctccc tcttgggacg acaaaggtca aatcagccat tttttaggca
    10321 ctgacgattt aggacgggat attttaagcc gtattatgta tggtttttac tacacgcttg
    10381 gttccgcact gatgattacc ttattaattg cgattatcgg cggtatgatc gggatttatg
    10441 ccgggctgaa aaaaggacgt tcattttggt tgattagcca tttgttcgat acctttttat
    10501 ttatgccgat tttattgatt gcgatcatca ttgcaacctt aatggaagcg agtttggtca
    10561 atgcaatgtt ggcgattttc ttagcgatgt tgccgcattt tatccataaa atttatcaag
    10621 caaccgaaaa acaactcaaa aaagagtaca tcattacctt aaagctagac ggtgcaagct
    10681 gctggtattt aattcgagaa gtgattattc ctaatcttac cggcgtggca attaaagcac
    10741 tttcacatat ttttgtgatc gccatattag atattagtgc gttaagtttt attatgctgg
    10801 gggctaaaag cccgacccct gaatggggag cgatgattcg tgaatccatg gaactgattt
    10861 atatagctcc ttggacggtg atattacctg gcttagcaat tatttttagt atttttaccg
    10921 ttacaatact tggtacacgc ttaagcgtga tttttgaaaa ataccgtaaa gaatagtatt
    10981 taaataggat actgacacat aacaagcggt catttttaag taaaatttta cagattaagg
    11041 aatagtatgg cattacttga tattcgccat ttaagtattg aaattgatat gccaaaaggc
    11101 agagtaaaaa tggtggataa catcaacctg actgttgatg agggcgaaat ttgtggcttg
    11161 gtgggagaat ctggttcggg aaaaagcctc atagccaaag tgatttgcgg tatgattaaa
    11221 gatgaatgga ttgtgagtgc agatcgcttt cgctttgacg atattgaatt actgaaactt
    11281 tcgccagcgg aacgccgaaa attggtaggc gatcatattt caatggtatt ccaagatccg
    11341 cttactagcc ttgacccaag ccagcaaatt ggtaaacaac tgatgcaaac cattcaattt
    11401 agagggaagt ggtggcaacg atttgggtgg aaaaagaaaa aagcaatcga gctactacac
    11461 cgtgttggta ttcgtgatca tcaagatatt atgaaaagtt acccaagcga tattaccgaa
    11521 ggcgaagctc agaaagtgat gattgcaatg gcggtggcaa atcagccccg attattggtg
    11581 gcagatgagc cgactaatat tatggaatca accacgcagt tgcaggttta tcgcttgctt
    11641 tccagtatga atcagaattt gggaacctca atcttgctgg tgagtaatga catgcgtagc
    11701 attcaaaatt gggttgattc ttacaatgtg ctttattgtg gacaaaccgt tgaaattgcg
    11761 gataaagaga gcattcttga atcgtcttac cacccctata ctcgagtgtt actcaatagt
    11821 tcgccggact tttctcagcc tttagccttt aaaagtagct taaatacgct acgaggctca
    11881 gtcccgatgt tacaagaaat gccgattggt tgtcgtttag gccctcgttg cccttttgca
    11941 caaaaaaaat gtatcaacaa accgccatta gtgaaagtaa aacagcacga gtttgcctgc
    12001 cattttccga ttaactttag agaacaaaat ttgcttaaaa ataaaacgga aaatacgccg
    12061 tttgtggtgg ctgaaatagc ggaaaaagag gcgttttaat gtggttatta ttggctaagt
    12121 gtaacgggta acattaaagt atctaatacg aaactcaagg gtaaatcgat caccgcaagc
    12181 accgcgaata taccgccttc ttgcattact tggaaatctt ttattacgcc ggcataaaca
    12241 cggtaatcct gttcaaccaa gcttagtact gtgccacaag cggtgaggtt aaacatcaaa
    12301 tagagtagaa aaacgagttt acaagcggtc aatttcatca aaaaatctcc aaatacgctt
    12361 ttattttacg ctatttttat cgggttggcg taaaattcgt tttaaaaaca gctattttca
    12421 ggcagaatgt agccgaatcg acattaaata tactaagagg atcttatatg caaacttaca
    12481 acattgcagt gcttgccggt gacggcattg ggccggaagt gatggcagaa gctatcaaag
    12541 tgcttgaagc gactcaacaa aaatttggct ttaaactaaa ttttaatcaa tataacattg
    12601 gtggagcagc gattgatgct caaggtaaag cgttacccga aaatacctta aaaggctgtg
    12661 aagaggcaga tgcgattttg tttggctcgg taggtggccc gaaatggacg catttactac
    12721 ctgatgagca acctgaacga ggttcgctat taccactgcg taaacatttc tcgctattct
    12781 gtaatttacg ccctgctgca ttgtatcaag ggctggaaaa attctgccca ttacgtgccg
    12841 atattgctgc taaaggtttt gatatggtgg tggtgcgtga attaaccggc gggatttatt
    12901 ttggacagcc gaaaggccgt gatggtgaag gtgcgcaaac gagagcgttt gacaccgaag
    12961 tatactacaa atatgaaatc gagcgtatta cccgtgtggc gtttgaatct gcaatgaaac
    13021 gtaaaaaaca cgtaacctct gtggataaag ccaatgtgtt acaaagctcg attttatggc
    13081 gtgaaaccgt cacggaagta gctaaagagt tcccagaagt cacgcttgag catatgtata
    13141 ttgataatgc gacaatgcag ctaatcaaag cacctgaatc gttcgatatt ttattatgct
    13201 caaacatctt cggcgatatt atttccgatg aggctgcaat gattacaggt tctatgggca
    13261 tgttgccttc agccagcctc aatgagcaag gtttcggctt atatgaaccg gcaggcggtt
    13321 cagcaccgga tattgccggt aaaaatattg cgaatccgat tgcgcaaatt ttatcagccg
    13381 caatgatgtt gcgttatagc tttaacttag gtgatgctgc tgatgcgatt gaaacagcga
    13441 tccaaaaagc ccttgctgat ggctaccgta ccgctgattt agctgatgac agcaaaccgc
    13501 tttctacctc agaaatgggc gatattattg cgaaaaatat tctcgcttaa ggctagaagt
    13561 taaatagcac aagcggtcat tattcgccaa atttttgcaa attttccgct aataatgacc
    13621 gcttgtttat tactcgttag ccgtcaatct cttcgcctgt ttcttcccac ttaaaattca
    13681 atgccgcaga gttgaggcaa aaacgcaacc ctgttggtgg tgggccgtcc ggaaaaacgt
    13741 gtcccatatg cgaatcacaa ttcccacaac gaatttcgat acgatgacgt cctaaactgt
    13801 aatcatctaa gtaacgtagt gacgattctg aaatcgtttg gtaaaaactt ggccagccac
    13861 aaccggcatc aaatttagta tctgagtgaa ataaatcgtt atggcatctg gcacaacgat
    13921 aaattcctac ccgatgttca ttcaaaaatt ttccggtaaa cggacgttcc gtaccgtggt
    13981 tgattaaaat atcaacttgt tgttctgtca gggcgtgaat aggtttaatc atcagcaatt
    14041 ctcctaagat agtagcgaag tcattgtagc tttttttgac ctgaaaatcg ttataaattt
    14101 caaaatttga catagatcac aaaaaattta tctgttatat tggaagggtt cttttggctt
    14161 gtcaggaaag tgaaaagatg tgctataatt caagcatctt tagtgtagta cataaagaac
    14221 aaattttgtt taactttaat ataggtagaa aaatctatgg caattaaaat tggtattaac
    14281 ggctttggcc gtatcggtcg tatcgttttc cgtgcagcac aacaccgtga tgacatcgaa
    14341 gtggtaggta tcaacgactt aatcgatgtt gattatatgg cttatatgct gaaatatgat
    14401 tcaactcacg gtcgttttga cggtactgtt gaagttaaag acggtcaatt agtagttaac
    14461 ggtaaagcga tccgcgtaac agctgagcgt gacccggcta acttaaaatg gaatgagatc
    14521 ggtgttgata tcgcagttga agcaacaggt ttattcttag atgatgaaac tgctcgcaaa
    14581 cacatcaccg caggtgcgaa gaaagttgtt ttaaccggtc cgtctaaaga tgcaacacct
    14641 atgttcgtaa acggcgtaaa ctttgatact tacgcaggtc aagacatcgt gtctaacgct
    14701 tcttgtacaa ctaactgttt agcaccatta gcgaaagtta ttcacgaaaa attcggtatc
    14761 aaagaaggtt taatgacaac tgttcacgca actactgcaa cgcaaaaaac agtagatggt
    14821 ccatcagcga aagactggcg tggtggtcgt ggcgcgtcac aaaacatcat tccttcatca
    14881 acaggtgcag cgaaagcagt aggtaaggta ttacctgcat taaacggtaa attaaccggt
    14941 atggctttcc gtgttccaac cactaacgtt tctgttgttg atttaactgt aaacttagaa
    15001 aaaccagcaa cttatgcaga aatctgtgct gaaatcaaac gtgcttcaga aaacgaaatg
    15061 aaaggcgtat taggctacac agaagatgca gttgtttcaa cagacttcaa tggtgcaact
    15121 gaaacttcag tatttgatgc agcagcaggt atcgcattaa ctgatacttt cgttaaatta
    15181 gtatcttggt acgataacga agttggctac tcaaacaaag tattagactt agttgctcac
    15241 gtatataact acaaaggtta attgctaagt tatattttaa atatagagcc aaattctgaa
    15301 cggaatttgg ctcttttgct gcgaacaata aattgaatat agtcgcgttt tcccataaaa
    15361 tcaatttcct acaaac
//
LOCUS       DANLXB010000050        15374 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLXB010000050 DANLXB010000000
VERSION     DANLXB010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15374
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            172..1362
                     /gene="malE"
                     /locus_tag="PXD41_000993"
     CDS             172..1362
                     /gene="malE"
                     /locus_tag="PXD41_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL6288541.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1481..3019
                     /gene="malF"
                     /locus_tag="PXD41_000994"
     CDS             1481..3019
                     /gene="malF"
                     /locus_tag="PXD41_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL6288542.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3072..3962
                     /gene="malG"
                     /locus_tag="PXD41_000995"
     CDS             3072..3962
                     /gene="malG"
                     /locus_tag="PXD41_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL6288543.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4037..6094
                     /locus_tag="PXD41_000996"
     CDS             4037..6094
                     /locus_tag="PXD41_000996"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL6288544.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6208..8934)
                     /gene="malT"
                     /locus_tag="PXD41_000997"
     CDS             complement(6208..8934)
                     /gene="malT"
                     /locus_tag="PXD41_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL6288545.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNFVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9098..11467
                     /gene="malP"
                     /locus_tag="PXD41_000998"
     CDS             9098..11467
                     /gene="malP"
                     /locus_tag="PXD41_000998"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL6288546.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11549..13627
                     /gene="malQ"
                     /locus_tag="PXD41_000999"
     CDS             11549..13627
                     /gene="malQ"
                     /locus_tag="PXD41_000999"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6288547.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13692..15353)
                     /locus_tag="PXD41_001000"
     CDS             complement(13692..15353)
                     /locus_tag="PXD41_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL6288548.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         4728 a         3187 c         2977 g         4482 t
ORIGIN      
        1 tgtgaagcag atcacaaaat gataaaaaat gttacttaga tcatactttt agcttggggg
       61 gcgtagagca aagggtgatc tcaaatagat tgtatagccc ataatttgcc ataatttaat
      121 aaatgggttg tttcatatcc gtttctttta tttaacttca aggagttttt tatgaaaaac
      181 aaatgtgtca aattcacctt agctactctt gctaccttag ttctttcagg aacagtaatg
      241 gcaaaaatga cggaaggtaa actcgttatc tggattaacg gtgataaagg gtacaatggg
      301 cttgccgaag tcggtaagaa atttgaaaaa gataccggtg ttcaagtttt agttgaacac
      361 ccggatagac ttgaagaaaa atttgcacag gttgcctcaa ctggtgacgg tccggatatt
      421 atgttctggg ctcacgaccg ctttggtggt tatgcacaat ccggtttatt ggctgaagtg
      481 aatgtaagca aagaatttaa agataaattt gtcgattttg cttgggatgc tgaaacttac
      541 aacggcaaaa ttatcggtta tccggttgcg attgaagcga tttcattaat ttataataaa
      601 gatttagtga aagaagcacc aaaatcttgg gaagaaatta ttgagttaga taaaaaactc
      661 aaaaaagagg gcaaaaatgc cattatgtgg aacttatccg agccctattt cacgtggccg
      721 attgcggctt caaacggagc ttatgcattc aaatttgcta acggcaaata cgatccaaaa
      781 gatattggtg tgaacaatga aggggcagta aaagcactac aatttgtagt cgatatggtg
      841 aaaaataaac atattagtgc ggatatggac tatgccgttg ccgaagcctc ctttaataaa
      901 ggacaaagtg ccttaaccat caatggtcct tggtcttggg gcaatattga taaaagcggt
      961 attaaatatg gtgtaacttt actcccaaca ttaaacggtc aagcttctaa accattcgta
     1021 ggggtgttaa gtgccggtgt aaacagctca agcccaaata aagatttagc caaagaattc
     1081 ttagagaatt atttactcac cgacgacggt ttagatgcag tcaataaaga taaaccttta
     1141 ggtgcggtgg cgttaaaatc ttaccaagag aaattagcgg ctgatcctcg tattgctgca
     1201 acgatggcaa atgcgaaaaa cggtgaaatt atgccaaata ttccgcaaat gtcttctttc
     1261 tggtatgccg aaaaatctgc tatcaataat gcagtgaccg gtcgtcaatc ggtgaaagaa
     1321 gcattagatg atgcacattc acgcattcaa aaacaacaat aattcttcat cattctgagt
     1381 gggttattat gacccactct atttttagat tcaccctaaa tacaataaaa gtacagtaaa
     1441 agtaccgtaa caaaatgcag taaaaattcg aggtgctgtt atgctaactc aaactcaatc
     1501 caaatccact cattggctca aatatctctt agccggatta gtcttgctcc ttgacttcta
     1561 tcttgttgtc ttaatgtact cacaaggtga atatcttttt gctattttaa cgctgattat
     1621 tctaacttcc ggtgtctata tttttaccaa taaaaatacc tatgcttggc ggtatgttta
     1681 ccctggcatt accggaatgg caatttttat tttgtttccg ctggttgcga ctattgcaat
     1741 tgcgtttacc aactatagtg gttctaatca attatccttt gaacgagcgg tatccgtctt
     1801 aactgaacaa cgctattttg ccggagataa atatcaattc accctttatc cgcaagcaga
     1861 taataaatat caaattgcat taaccaatcc gacgacagag caaacttttg tgtcagagcc
     1921 gatttcattg gctaccggaa cgaatgtggt tgtaaccgag caaaacagac caactggcga
     1981 agtcgctccc cttaaagtga ttacgcaaaa tcgggccgca cttcaatcaa tgaaagtggt
     2041 tttaccgaat aataatgaac tgacaatgag ctcattacgt caattctccg agcaaaaacc
     2101 acgctatcaa tttgatgaag aaaataaaat attactcaat aatgagactg gcaaacgtta
     2161 tcaagcaaat gacgaaaccg gtttcttcca atcgattgat gaaaacggtc attggcaaag
     2221 cgaaacactt gaaccaggtt atactgtcac atcaggcttt aataacttca ttaaaatttt
     2281 taccgatgaa ggtattcaaa aaccttttgt ccaaatattt atttggacgg tgatcttctc
     2341 tttattaacc gttgtcttta ccgttattct cggtatggtt cttgcctgtt tggtacaatg
     2401 ggaggcatta aaaggtaaag cagtctatcg tgtcttattg attttacctt atgccgtacc
     2461 atcatttatt tcgattctga tttttaaagg actatttaac caaagttttg gtgagatcaa
     2521 tatgatttta aaccaactat tcggcatcag ccctgaatgg tttaacgatc cgctccttgc
     2581 caaagtgatg atcttaattg tcaatacgtg gttaggttat ccttatatga tgattttatg
     2641 tatggggtta ctcaaagcta ttccggctga tttatatgaa gcctccgcaa tggacggtgc
     2701 ttccacttgg caaaacttca gtaaaatcac tttcccatta ctgttaaaac cacttactcc
     2761 gttaatgatt gcttcgtttg catttaactt taataacttt gtattaattc aactattaac
     2821 aaacggtcgc ccggatatga ttggaacaac cactccagcc ggttataccg atttattagt
     2881 cagctacacc tatcgtattg cctttgaagg aagtggtacg caagatttcg gcttagcagc
     2941 cgccatcgca accattattt tcttattagt cggtggcttg gcactcttaa atatcaaagc
     3001 aaccaaaatg gaattataaa agcgggaggg atttaacaat cccgacccca aactaacttt
     3061 aggagttata tatggcaatt gttcaatcta aatctgtgcg ttatcgggta tgggcaaccc
     3121 atttcatctt aatctgtttc cttgccttaa ttattttccc tttattaatg gtgattggca
     3181 tttcgttacg accgggaaat ctggctatcg gtgatattat tccaagccaa atttcgtggg
     3241 aacattggca agccgctctt ggttttgatg ttacacacgc cgatggtaca gtcacaccgc
     3301 cgccattccc ggtgctacgc tggttatgga actccatcaa agtggcaaca attacctcta
     3361 tcggcattgt aaccttatct acgacctgtg cttatgcatt tgcccgaatg aaatttaaag
     3421 gcaaaaaaac cattctacaa ggtatgctga ttttccaaat gttcccggca gtgctttcct
     3481 tagttgcctt atatgcgttg tttgatcgtc ttgggcagta tgtaccgttt cttggtttaa
     3541 acacacacgg tggtgttatt tttgcctact taggcggaat tgccttacac gtttggacaa
     3601 tcaaaggcta ctttgaaacg attgatggtt cattggaaga agccgcttcc cttgatggtg
     3661 caaccccgtg gcaagcgttc cgattaatct tattaccgct ttcagtgccg attttggcgg
     3721 tagttttcat tctttcattt attgccgcca ttaccgaagt accggttgcc tcactcctat
     3781 tgcgtgatgt aaacagctac accctagccg ttggtatgca acaatacctc tatccgcaaa
     3841 actatttatg gggtgacttc gcagcagcgg cggtcttatc cgcaattccg attacgctgg
     3901 tcttcttatt ggcacaacgc tggttaatcg gtggtttaac tgccggcggc gtgaaaggct
     3961 agtttgcaaa aaattctcta aaaacgaccg cttgtcgagc tgatactgcg gtcgtcaatc
     4021 tttattaggg ctgtctatga aaaatgcgtt accttatctc tgcttattct atacctcaag
     4081 cctttttgcc caatcttggc aacattccca tttttctgat tttaacgatg atctcgaaaa
     4141 acattttttt caatcccaag ttcaattgga aaaagggagc tatccgctta ggttcaaatt
     4201 tggcgaacaa tgttatcaac cccaacaagc gataaaatta aatcaatcgg ttgcgttagt
     4261 cccttgtata aatgaagctc cacaactgcg gttgtttcgt caaggcaact atctggcaca
     4321 aattgatctg cgaagcggca ctccgacacc cacaatcagc gtagaacagc agctacagca
     4381 caatgaagcg atgtttcaaa gttgcccgaa ttgggataaa aaaccgattg aaattgatgt
     4441 ttcttccact tttgccgaag gcgaatcggt tagcgatttt tattcaggca acaccgctat
     4501 cgttaaaaac ggcaaagtca ccttaatgcc caatgaaaac gcaagcggtc tgattttgct
     4561 ggaaaaaagc aataccgaaa atacggcaac gtttgattgg aaaaatgcca ccgtctattt
     4621 tgtgctgacc gaccgctttt ataacggcga tccgaccaat gaccacagct accaccgcca
     4681 aaaagacgga atgcaagaaa tcggcacctt tcacggtggt gatttaaaag gattaaccga
     4741 aaagctcgat tacctacaac aacttggggt aaacgtattg tggattagct ctccgttaga
     4801 acaaatgcac ggctgggttg gcggcggtga taagggggat tttccgcatt atggctatca
     4861 cggttactat catttagatt ggacgaaatt agatgccaat atgggtactg aagacgattt
     4921 aagtcgcttt gttcaacaag cccaccagcg tggtattcgg gtgctatttg atgtggtgat
     4981 gaaccatacc ggctacgcga cgcttgccga tatgcaggag tttaactttg gcggatttta
     5041 cttaacaccg gacgaaatta gccgcacatt aggcgaaaaa tggacacact ggaagccgaa
     5101 atcaggacaa aattggcaca gtttcaatga tttcattcgc tttaacgata atcaggcttg
     5161 gcaaaattgg tggggaaaag aatgggttag agctgatatt gccgattacg acagccctaa
     5221 atttgatgat ttaaaaatgt cgctcgctgc ccttcctgat ctaaaaaccg agagcgaaca
     5281 agcggtcaaa ttacctgaat tttttgcaaa taaaaatacc aatgccaaaa cattaccaaa
     5341 cgccaaagtg cgtgattatt taattggttg gttatccgat tgggtcagaa aatatggcat
     5401 tgacggtttt cgggttgata ccgccaaaca cgttgaaaaa tccacgtggc tggtattaaa
     5461 acaatcggca caacaagcct taaacgaatg gcaaaaagcc aatccgaacg ccggttttaa
     5521 cgatcgcttt tggatgacag gagaagcgtg gggacacggc gtgttcaaaa gtgactatta
     5581 tcaaaacggt tttgatgcaa tgatcaattt cgattttcaa gatcaggcta aacaagggtt
     5641 aaattgcttt gcccatattg agccgattta tgccgaaatg aatcgcaaat taagcgactt
     5701 caatgtgttg agctatttat cttcacacga tactcgatta tttttccatt cggatagtga
     5761 acaaaatatc gaaaaacaca aaaccgccgc aaatttgctg ttgctttcac ccggtgcagt
     5821 gcaaatctat tatggtgatg aaagtgggcg gacatttggt gcgaccggtt cagacctgat
     5881 acaaggcacc cggtcggata tgaattggca agagttgcag caagatcctc agaaacaggc
     5941 attgcatcaa cattggcaaa aattgacaca attccgccaa cgccatccgg ctattggcgc
     6001 aggtgtccat caactcatca aaaatgatag ctactttgca tttaagcgtg tgttgaatga
     6061 agataaagtg atggtggttt gggccggaaa ttaaatctac tttagcttca agttttctct
     6121 cttctgggga aaacttgaag ccggttcggg gaaacaagtt gcaaaaaatt actaaaaata
     6181 gaccgcttgt tccccatgag cttgtgatca atgatacccc atcaacatca gcagttcttt
     6241 cgtatagctg attgcttcgt tacgattcgt cacaccgatt ttctgataaa gatttcggat
     6301 atgggtttta atcgtggttg cagccacttg caattcatct gaaatttgtt cattgctata
     6361 tccggagtaa atcaaaccca atacttgcca ttcccgctga gtgagcggac taatttttaa
     6421 gagttccggc actttcggat ttttcaataa ttgattcaca aagttttcat caaaatgggc
     6481 aaatttttgg cgataaaatt gattgatgtt gcgtaaaata aactgtgctt tgtgcaatac
     6541 cagttcatct agcacattaa gttgcaataa atggcggatc tgctgtgcca ttacatcccc
     6601 ttcaatcaca aacgcactga taaaattcgt ttggcgggtg agttttagtg cctgaattaa
     6661 atcttgctga gccaattctt tctcgccttg taaaaaataa agccggttac gaacaattaa
     6721 tgcgcgattt aaatcgctaa tcagagaaaa tttttcagcc gtttcaatta aattatctaa
     6781 aatggctttc gcctcgtgat attcctcaag caagattcga gaccgtgcaa tatttcgcca
     6841 ttgcacttgg gtaaaatgat ttttatctga aaccggtgag gggttttgaa ttaaccagtt
     6901 cctcaccgca gaaacgtcat tggtcatctg ccaataaaat atacgtacct gatcggcgtt
     6961 ggcaatccaa tcgtggtgat aagaatgaga atgttctaat tgttcgacct cgcctaataa
     7021 tcgggcagtg ttatccaaat tgcctcgagc caacgagatc ttcgtgagta aagttaagca
     7081 ttgtaactta tcttcaaatt tagataaggc attcattccg gcaactgcca ttgattcagc
     7141 tttatctaag ttataccatt cccataaaat cttgccttta gaacgtagca aaaattcata
     7201 catcggcact ttttgtagat ggttttcttt cacaaactcg cttgctttat ctaacatttc
     7261 ataggctgct tgtgaaaacc cttgggcaag caaaatttca gattgttgaa gctgtgacca
     7321 caaaatattg tggtaagtat gatgctgacg tgccatacgc tctgcttttt gcaacattgc
     7381 taatgcttct gccagattgc cgtggcaatg atgagcttcg ccaataatag acgttgcaac
     7441 aatatgagca taataggcat tttctgaaag atcgtttaac gcttcagacg ctaattgaag
     7501 tgcggtattc tcatcaccgg aattgatagc aacttgtgcc cgtagcacat taaattccgc
     7561 attggcagtt ttgctcaatt caattttatt ttcagttaat gcacgagaaa aatccgctaa
     7621 aataccacct acttcaatat ggcggtgctg gctttgtacc aaccaggctt tgagtaacac
     7681 aaaattagta tgttcggtta aatgggcgta atctaagcaa tttaagctct cttccaataa
     7741 tttgagttct ccttgatgaa acaccgtcca agcgtgtttg ctcaaaatat tgagtagtaa
     7801 tccggtatcc gataactgca ttgcgtgatg taaggcttct gtaacatagc ctaattgtaa
     7861 ccacgcattc gccgcctttt gatgcagttg cggtaattca gcatataact cattttggca
     7921 acataaattt aaaaaggaag caaaaagcgg atggaatttc caccagctat catcactact
     7981 ctgccactta ctgtttgcca tttgttgtaa aaacaaacct tgcttttcga gagactctaa
     8041 tttggtgcga ctgttttgct cccctgtaac agcctgcact aaagactcat tcattgaatg
     8101 caaaaccgaa caacgcaaaa taaacaaacg agtctcttca tcgactttat taagcacttc
     8161 atcggctaaa tattcgttaa tatgaaaatg gtttgatttg gctaaacgtt tggcaatatc
     8221 ttgcagtggt acttgtagcg tgtgtgattt attttttgca aaaaggctaa ttagctgaag
     8281 ggctgtgggc cacccttcaa cttcgttaca cagtgcgata acatcttgct gatttaactc
     8341 cgaacctaat cttgcttgaa aaaaagcggt actttcttgg tgatcaaaca ttaactggtt
     8401 aatatcaatt tccaataatt gttcttgcac tcttaaactg gcaatactta acgggggaat
     8461 tgatcgagaa atcaagataa gcgtcatatt agacggttga tgtttaatcc aatattttaa
     8521 tgcttcgtga atttcatcat tttcaataat atgataatca tcaatagcaa gataaaaatg
     8581 ctctgaaaat gccgcggctt taatcaataa ttgattaaat aaagctaata aattagcttt
     8641 acgattttcc tctaacaata cgtctatttc ttcattgatt gctgaatgca atgccgcact
     8701 aaaataagtg gcaaaacgat ctgaattatt atcgccttca tctaacgcat accagccgat
     8761 attcttttta ttttcaatcc attgggaaac cagagtggtt ttgccataac ctgccggtgc
     8821 atttatcaat acgaccggat aactgcaaga tttgtctaat tcttgaatta aacgttttcg
     8881 aggaatgctg ttttgtaatc gaaaagaaca aacaagtttt gatggtatta acataataaa
     8941 ttcaattttc tctcataaca aaatagggat gatatatcca ccatttgtgt tctcactact
     9001 tccttataat cataccatac aagatgatta ttgggatgat ttgattttat ttggatttta
     9061 cataatagcg acattcatct ttaaccgggg gtttcctatg acatttaatt ctattgtaga
     9121 aaaatactgt cgctactttg atgtgacaga tccaaaacac tttaccttac agcagtggta
     9181 tcaagttgtt gctgaaggtt cccttgagct aatttatagc cagcctgcaa ccaaaccgac
     9241 agaatcacgc cacgtgaact acctctcaat ggagttctta atcggtcggt taaccggcaa
     9301 taatttaatg aatttaggtt attacgaaca aattcgtgac tatcttaaac aatatcaagt
     9361 tgaattagta gatgttttag aacaagagcg tgatccggca ttgggtaatg gcggattagg
     9421 tcgtcttgct gcctgctttt tagattcgat ggcaactgtc ggacaaaatg caaccggcta
     9481 tgggcttcat tatcaatatg gtctgtttaa acaaagcttc aaagagggaa tgcagaaaga
     9541 agcagcggat acttgggctc gtgacagcta cccgtggcat cgttttaatc cgtctaaaac
     9601 ccgccatatc gggtttggtg gaaaaatcaa acatatccaa gccgatcaat atgaatggca
     9661 gcctaaattg accattcaag gcaaagcctt tgacttgccg attgtaggtt ataaaaacaa
     9721 catcattcaa ccattacgtt tatggcaagc agatagtgac caatcttttg attttgatgc
     9781 ctttaatgag ggtaaatttt taagtgccga taaaacgatt gtcaatgcag ccgcactaac
     9841 tcaagtgctg tatccaaacg acaaccatca agccggacaa aaattacgct taatgcagca
     9901 atacttccat tgtgcctgct cggttgccga tattttagat cgtcacatta gcgaaggtta
     9961 ttcgttagaa gatttagcaa aacgccaagt tattcaactc aatgataccc atccaacgct
    10021 cgctatacct gaattgatgc gtgtactgtt agatgaacat caattcactt gggagcaggc
    10081 ttgggatatt tgcagcaata cctttgctta cactaaccat accttattac ctgaagcact
    10141 tgaacaatgg gatcaacgcc tatttaagca gctattacct cgccattatc aaattgtgga
    10201 aaaaatcaat gatattttcc acgacaaagt acaggcagaa tttggtgatg atgcaaaaat
    10261 ttgggaaaaa ttagccgtgc tatttgatta ccgtgtgcgt atggcaaacc tctgcgttgt
    10321 cacctgcttc cgtgtaaacg gcgttgcgga aattcactcc gatctcttag tgaccgatct
    10381 attcccggaa taccacaaat tattcccaac aaaattctgc aatgttacta acggcatcac
    10441 acctcgccgc tggattcgac aagctaatcc acaattaagt gatttattgg atcgtacctt
    10501 aaaacaagat tggacacaca atctggaatt attaaaaggc gttgaacaat atgcggatga
    10561 caccggtttc cgtgaagaat atcaacgcat taaacgcaat aacaaagtgg ttttagccaa
    10621 tgaaatccat aaaacattag ggttaaatgt caatcctaat gcgatttttg atgtgcaaat
    10681 taagcgtttc cacgaatata aacgccaaca tttgaatttg ttaaacatta ttgcgaccta
    10741 tcaatcgcta aaagctaacc cgaaccaaga ctacacacca cgtctattcc tattctcggg
    10801 caaagctgca ccgggttatt atttagcaaa aaatattatt cacgctatta ataatgtggc
    10861 agatattatt aataacgaca agcaggtaaa tgatcgacta caagtggcat tcttaccgga
    10921 ttatcgagtc agtcttgcgg aaaaaattat tccagcagct gatgtatcag aacagatttc
    10981 aatggcaggt aaagaagcct ccggtaccgg taatatgaaa ttggcactca acggcgcatt
    11041 aaccttaggt acgctagacg gtgccaatgt tgaaattgct gatatggtcg gtgaggagaa
    11101 tgtctttatc ttcggtcaca ccgtagaaag cgtgagggaa ttattagcaa aaggctacca
    11161 accgaaagcc tactataacc aagatccgat tctgaaaaat gcggttgatt tcttagccac
    11221 aggaaaagcc tctaacggag ataaagaggc attcaagctg atgttagata gcctgttgga
    11281 acgagatcct ttcttagtct ttgccgactt tgatagctat cgccaagcac aagagaaaat
    11341 tggtgtagcc tatttagatc aagaaacttg gctgcgtagt gcaattttaa atactgctcg
    11401 tttgggtgca tttagctcag accgctcaat taaagattat caacaacgta tttggttgaa
    11461 tagataataa attcgggcga cttctacaat aaaggaagtc gcctattttc tgctgtattt
    11521 catatgtatt tatatatgga gagaaatgat gaaaataact gccaaacaat attatcgggc
    11581 tggaattatg ccctattttt tcgatgagcg tggtgtaaaa aaaacagcat ctgaaaaaat
    11641 aaaacattcg ttattcaaag cctttaacgg caatactcaa gcaagagaaa cacctatccc
    11701 tacggtcaac attttttacc agcaccaacc ctgtttttta ccttttcatt tagcggataa
    11761 aaaacatccg ttaaccggta cttggcagct acaactagaa aattcaaacc aaattatttc
    11821 cggcaaaatt aaagcaaggg gaattacatt acctcaagat ttgcccttag gttatcacca
    11881 attacagcta aaaacggtag ataaaacctt taattgcacc attattatcg ctccggaacg
    11941 ctgctaccaa ccacaagccg tcattgaaca aaaaagattg tggggaacct tcctacaact
    12001 atacacctta aaatcagccc acaactgggg gattggcgat tttggcgatt taaaagactt
    12061 cattcaacag attgcccctt accaagcaga ttttatcggc ttgaacccga ttcactcact
    12121 ttttccggca aacccgaatt ctgccagccc atacagtcca tcctctcgcc gatggctgaa
    12181 tattgcttac attgatatca atcagctagc ggaatttcaa caaagtgatg aagcacaaac
    12241 ttggtttcat tctgctgaaa tccaacaaca attatcagaa ttacgcactc aggattggtt
    12301 gaattacgag caaatcattc cgttgaaatt gaaagggcta cgctttgctt tcgcaaaatt
    12361 tcagcaaaat atgaccgctt gcgctgcccc tgcttttatc gaatttgtac aaaaaggtgg
    12421 tgaaagctta caagttcaag ccacatttga tgcccttcat cagcatctat cggcacaatt
    12481 tgccgaccaa tggggctggg atttctggga gaaagcctac caagactacc actccgcagc
    12541 cgtgcagcaa tttagagaaa cgcataaaac cgacatagaa ttttaccttt ggttacaatt
    12601 cgttgccgat caacagctag cagaatgtga tgctatctgc cgtcagcaaa atatgcgtat
    12661 tggtatgtat cgcgatctcg ccgttggcgt cagcccgaat ggtgcagaaa cgtggaatga
    12721 caaacaactt tattgcttaa atgcctctgt cggcgctccg cctgatgtat taggtccgca
    12781 aggacaaaac tggggcttaa ccccaatgaa tccgcatgta ttaaagcaac aagcctaccg
    12841 tccgtttatt gagttagtca gagctaatat gagtcattgc ggtgcattac gccttgacca
    12901 tattatgtct ttactccgtt tatggtggat ccccaaaggc gatagtgcgg ttaatggtgc
    12961 ttatattcgt tatccagttg atgatttaat cgcaattttg gcacttgaaa gccaacgcca
    13021 ccaatgccta attatcggtg aagatttagg tactgtgcca aaagaaattg tgagcaagct
    13081 caaaaatgcg gggattttat cttacaaaat tttctatttt gaatttgatg aacaagggaa
    13141 gagtcgagac ttacagcatt acccttacca agcaatgacc acattaagca cccacgattt
    13201 accgactatc aatggttatt ggcgtggcta tgattttgaa ttaggcgaaa aattcggcgt
    13261 ctatcctaat tcgaatattt tggcaatcct taagcaagat cgagtcaatg ccaaagccaa
    13321 aatcttacaa cgcttacaag aacataacgt agagatcgca cctgaaatta gcgagcaact
    13381 taattctccg gtgaataccg catttattca ctgtttacaa acctatgttg caaatgtaag
    13441 cagcggatta ttcggcttcc aacccgaaga ctggttgggt atgactgagc cggttaacat
    13501 tccgggaacc agtacacaat atgcaaactg gcgacgtcgg cttagtgtta acctcgagga
    13561 gatcttcaca gataaagata ttcaagcctt attaaaagaa gttaatttaa tccgtaaaaa
    13621 tcaataaaag ttagataaga aaaaaggcga ctttccgtcg ccttttgggc ttatatgctt
    13681 gatgtctatc tttatccacc tgaaacccac aacataatcg ctagcacttg aggtagcata
    13741 atacgcaaaa acattactag tgggtaaaca gttgcatagg ataacgctgc agcgccattt
    13801 ccctctttaa tttcattggc aaaagcaagc gctggaggat cagtcattga gccggcaagt
    13861 aatccacaaa tcgttaaata gtttactttg ttatacattc tggcaatcaa tcctgctatc
    13921 atcaatggaa caaaagtaat aatcgcccca tagcatatcc actcaacgcc ctcactgctt
    13981 aatagcgttt cgagaaatct accgccagat tttaaaccaa ctaccgctaa aaacagtaca
    14041 ataccgattt cacgcaatgc aagattggca cttggtggca taaaccagta gagtttactg
    14101 aaactaccaa ttcttgcaag aataagagca accaccagtg gtccaccagc caagcccagc
    14161 tttaacgcaa cagggaaacc cggtaaataa atcggtacag aaccaagtaa tactcccaaa
    14221 ccgatcccga taaatattgg caacatttgg acttgttgca actttgagtg cgcattgccg
    14281 ataatcgtca ttaccatttc aatatcagct tgccgcccta ctaaattgag aacatcacca
    14341 aattgtaacg tcatatcacc tgttggtact aattctacac cggctcgatt taaacgagaa
    14401 atgacaacat cgtatttgcc tttaagcatt agctgacgaa tttgtttccc gaagactttt
    14461 tcattcgtca ctacagcacg ttcagaacgg taaatcgtgc ctttggttga gacagataca
    14521 tctactgcct cacctaaaat aatctgcatt tttcgtaatg aggattcttc acctactaag
    14581 tgtaaaatat ctcctatctg tagaatcgta tctacacgtg gaatagaaag ctcattcccc
    14641 cgttttaagc gtgaataagc tacttcgtgc aaattaaaat caggaatttg tttcaacgtt
    14701 aaaccgtgaa tatttggatt agtcagacgg acatttaagg tactaagttg atctttactt
    14761 ctattttgct gtttgttaaa agcctctgct tccgcctcaa tattgattcg aaataaaatc
    14821 cgaatcagcc acattgaaag tagaattccg ataatgccga acgggtaagc aatcgcataa
    14881 ctcattccca taatttcagt tacactctca gcgcttaact cagccaatac ctgttgacct
    14941 gctcctaaag aaggggtatt ggttacagcc ccggagaaaa tgcctaaaat cacaggcaaa
    15001 ggaacattga agaatttatg aataagaata actaaaatac cgctaatcag tacaatcagt
    15061 accgcaaaac cattgagttt taagccagaa tgttttagtg aggcaaagaa tccaggtcct
    15121 acttgaattc caattgaata aacaaataaa atcagcccga actcttgaat aaaatgaagc
    15181 gtatgggcat cgagcttcac atcgaattgc gccataaaat gggagacaaa cagcccacca
    15241 aataacactc cccctatacc tagccccacg cctctgattt taatatggcc aatccataag
    15301 cctagaacgg ccactaaaga taataaactg acagtaagtg caatttcgct cattacagcc
    15361 tctctttaat atga
//
LOCUS       DANLXB010000051        15312 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLXB010000051 DANLXB010000000
VERSION     DANLXB010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15312
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(16..1242)
                     /locus_tag="PXD41_001001"
     CDS             complement(16..1242)
                     /locus_tag="PXD41_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6288549.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
     gene            complement(1239..2237)
                     /locus_tag="PXD41_001002"
     CDS             complement(1239..2237)
                     /locus_tag="PXD41_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL6288550.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(2248..3249)
                     /gene="pdxA"
                     /locus_tag="PXD41_001003"
     CDS             complement(2248..3249)
                     /gene="pdxA"
                     /locus_tag="PXD41_001003"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL6288551.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            3683..5047
                     /locus_tag="PXD41_001004"
     CDS             3683..5047
                     /locus_tag="PXD41_001004"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL6288552.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5137..6672
                     /gene="ddc"
                     /locus_tag="PXD41_001005"
     CDS             5137..6672
                     /gene="ddc"
                     /locus_tag="PXD41_001005"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL6288553.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            6775..7137
                     /locus_tag="PXD41_001006"
     CDS             6775..7137
                     /locus_tag="PXD41_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL6288554.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQVL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(7227..7814)
                     /locus_tag="PXD41_001007"
     CDS             complement(7227..7814)
                     /locus_tag="PXD41_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6288555.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            7990..8538
                     /gene="napF"
                     /locus_tag="PXD41_001008"
     CDS             7990..8538
                     /gene="napF"
                     /locus_tag="PXD41_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL6288556.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            8531..8797
                     /locus_tag="PXD41_001009"
     CDS             8531..8797
                     /locus_tag="PXD41_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL6288557.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            8836..11334
                     /gene="napA"
                     /locus_tag="PXD41_001010"
     CDS             8836..11334
                     /gene="napA"
                     /locus_tag="PXD41_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL6288558.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            11423..12328
                     /gene="napG"
                     /locus_tag="PXD41_001011"
     CDS             11423..12328
                     /gene="napG"
                     /locus_tag="PXD41_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL6288559.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            12328..13206
                     /gene="napH"
                     /locus_tag="PXD41_001012"
     CDS             12328..13206
                     /gene="napH"
                     /locus_tag="PXD41_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL6288560.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            13252..13680
                     /locus_tag="PXD41_001013"
     CDS             13252..13680
                     /locus_tag="PXD41_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL6288561.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            13691..14299
                     /locus_tag="PXD41_001014"
     CDS             13691..14299
                     /locus_tag="PXD41_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6288562.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(14361..15203)
                     /gene="cpdA"
                     /locus_tag="PXD41_001015"
     CDS             complement(14361..15203)
                     /gene="cpdA"
                     /locus_tag="PXD41_001015"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL6288563.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4547 a         3012 c         3370 g         4383 t
ORIGIN      
        1 ggttctttgt tgttactagt tcattatatt gcttaagagt gtgttgtttc caaatcctcc
       61 agatttagtc attacagtga tgcctgagta gttgcccttt tcaatggagc ataaaggaac
      121 gcccggtact accgcatatt gtacattcat ctctgttaca ttcatttgat ctaataatgc
      181 tgctgcacca tctccaccaa ataatataag gctatcaaat ttttcattat caaggcagaa
      241 tttacttaaa tcagctaaat gttgagaaat ttctttagaa gtttccgtga tattggcaga
      301 ttttgcattt acaacttttg cagggtttgc ccgaataata acatgatctc tactaaaacg
      361 tattagagcg tttaattgta gtttcagtga atgttctgat tgcgagtagt taatcaactg
      421 tgaaggcgaa ggattaaata caatagattt tcctcctaaa gttgaaatat attcatcaac
      481 ttgcagttgg cttgtttcgt gaattgaggt tacgacaatt aatgctctac ctaatttaag
      541 atttcgctct ggttgttgtt gattttggat atttttcaac ttctgtgcca atccggctga
      601 gccaacagga ataattttat tacctatgtg atttatgact tgggcaatca ttgagagatc
      661 ttcgtgcgtt ttagcatcaa taacgatctg tttatattca ctattttcaa tagatgcctg
      721 caaattatcg accgtatcac acgggattac ttgagcatca ggcaatagtt tttgcataga
      781 agatgaatgc acagggcaga taggatcttt tcctgaagca gtttcattta caggaacacc
      841 attaacatat aaatgaccag cttctatagt tcttcccatt tctggatatg caggacaaat
      901 aattgcttta acatcgggat ataaaccagc ccaagcttta atagcacctt caatctgata
      961 tttaacagag cctctcattg tggaatcaat tttaaggtaa atttgcccga tactattttg
     1021 aatagcattg ctaattgcaa tttgagtcag ctcttttgct ttctctccaa ttgctcttga
     1081 atctgtagaa acagaaatta cttgggcttt atcaggatga atttgggcta atgccgaaac
     1141 tttagttttt aagacagtgt caaatcctga ttcagcaaac ataaccgcgg tatcatttgc
     1201 accagtaagg tcatcagcaa taactaagag tgtctctttc atagattttc tccttttata
     1261 gtgtcttgtt ctaagccacc ttgacgtttt aaaacccacg ctgcaaataa tggagctaag
     1321 attgctgaaa ctaatacagc tgcggcaatc tgtgcagtcg cagtttgaac aaaaggtgct
     1381 aatgtagggt ctgcttgagc aacaatttca ggtgtaataa tggcatttcc agcagtagtt
     1441 cctgctgcaa acccgattcc tgattgatta ccacgtctta aaattgtttt gtaaccgata
     1501 aatacaagaa aacctgtaaa gagagaagct acgataccta aaataattcc tgttgctcct
     1561 ccagtaataa tagattgcag attgattcct gttcctaatg caaaagcaaa gaaaggaatg
     1621 actattgcac ctgttggttt cattaactct gtccatttag gatctaagtt accaataacc
     1681 ataccaataa taagaggaat aacagctgca agcattaatg aaagaggaat atctgctaat
     1741 cctgatacac ctaaaaatag taaaacaaag aaaggtccat cattaacagc cgaagcgaca
     1801 taagctcctt tatctctata atcaccatat ttccctgtaa acgctaacca aataccacca
     1861 tttgaatttg caacaacagt tagcatagct aataaagaaa cgcccataac accatcatta
     1921 cctacccata atcctaaaat cacaactaaa agagcgggaa taatagtttt aaatagtaat
     1981 acaacaccgg tatgggcaag tacaggtcca gaacttctca cggtaatttg catacctgta
     2041 gcgaaaatta atagtgcaat aagtggtcct gctgatgatt tgaataaagc cgtcgtaaat
     2101 gaacctaaat ttaaaaattc aggaaagaat gtaccaataa tagaaccaag aattagcggt
     2161 attaccattg caccgccagg aattttattc ataccatcat atatcgggac gatggattta
     2221 gatgtttgag tagacatatt aatctcctta gtgtgtcgca tatttgatat ttgccatttt
     2281 tgcacccaaa tagagtgctt cagtcatact acgactatct gctgttcctt tgcctgctat
     2341 tgggaaagca gttccgtgat cgacagatgt tcgaataaat ggaagaccga cagtaacgtt
     2401 tacacctgta tcaaagccta ataatttgat agggatatgc ccttgatcgt gatacatcac
     2461 aacaacaata tcgaattcat ttaggttagc tgcacggtga aataaagtat ccggagggac
     2521 aggccctgta acattaaacc ctttggcttg agcctcttga attgcgggaa caatttcttt
     2581 ttgatcttca tcgccaaaca ttccattttc acctgaatga ggatttaaac cagcgactgc
     2641 aatacgaggt tctttaaacc caagaatgcg agcattttct tctgctaaat caataactgt
     2701 agcaactcgt tctttggtaa ttaaatcaca ggctttacga agttggacgt gagtagtaac
     2761 gtgaataaca ttgagttttt cactggttag catcattgag taatctttag tattactgag
     2821 ggttgcaagg atctctgtat ggccaggaaa tggtttacca cctgcgtgta gggcttcttt
     2881 attcagtggt gctgtaacaa tagcgtggat ttttcctccc attgctaaat taactgcctc
     2941 ttcaatatat tcataagctg cttttccagc acgcggatca acttgagcaa aaggcaaatc
     3001 ttcaggcagg ttattcaaat ctaaaatatc aataacgcca tattcggcta caaagttatc
     3061 tagattattg agaattctta atttcaattc tgaatgaaca ataggtaagg ctcgttgtat
     3121 aatttttcga tcaccgatca caacagggtg tgctaactca taaatccgtt gattagctaa
     3181 tgctttaata ataacttctg gtccgatacc ggcggcatct cccatcgtaa ttcccaatat
     3241 aggtttcata tttactcctt gattgaaatt aatcattttg aacgaagtat agcttatatg
     3301 aaatcataaa agtgtgataa acatcacaaa agtgaacttt tttaatctta ttgatttaat
     3361 ttaatcaatt ttaaggtggt aaattggata gggtatgaaa gtgaaaggca tttattgcta
     3421 gataaaagct tcccttttca ataaaaaaga gtatcatacg ctctcttaaa cgtaacccta
     3481 catttaagtc tgtttccaac ctatcccaat ttctttattc cttaggggca tatagggtaa
     3541 aaacaaaaaa gctgaaacgc tttttttaat aagtagcgag tcaaatgccc catggcatct
     3601 attcttttag gaatagaaag cttaggcttt ccgcaaggca cccgacttat ttttttcacc
     3661 tcttgtagaa ggtttatttt caatgacaat taaaactcct attcaagccg ttcttgcttc
     3721 aaaccaatat tttttagatc gccaagatgc aatggaatca aacgtgcgta gctacccacg
     3781 taaattacct tttgcttacc aaaaagcaca aggcgtttgg gtaactgatg ttgaaggcaa
     3841 tgaatacctc gatttcctag caggtgcagg aacgcttgca ttaggtcata accaccctaa
     3901 attaatccaa gcagttaaag atgtattaga cagtggttta cctttacact cgttagatat
     3961 tacgactccg ttaaaagatg cttttacgga agaattactc tctttctttc caaaagataa
     4021 atatatcctc caatttactg gcccgtctgg tgcagatgct aacgaagcgg caattaaatt
     4081 agccaaaacc tacactggtc gtggcaacgt aattgctttc tccggtggtt tccacggaat
     4141 gacccatggt gcgttatcgc tcaccggtaa tttaagtgcg aaaaatgcag tacaaggctt
     4201 aatgccgggc gtacagttta tgccttatcc gcacgaatac cgctgtccgt ttggcattgg
     4261 tggcgaagcc ggtgcaaaag cagttgaaca ttattttgag aactttattg aagatgttga
     4321 aagtggtgtg gtaaaaccgg cagcggtgat ccttgaagcc attcaaggtg aaggcggtgt
     4381 ggttccggct ccaatcagct tcttacaaaa agtgcgtgaa gtcactcaaa aacacggcat
     4441 cttaatgatt gtggacgaag ttcaagctgg tttctgccgt tcagggaaaa tgtttgcctt
     4501 tgaacacgca ggcattgagc cggatatcgt agtaatgtca aaagcgattg gtggtagctt
     4561 accgcttgcg gtattagcga tcaaaaaaga gtttgacgct tggcaaccgg caggtcatac
     4621 cggtacattc cgtggtaacc aattagcaat ggcaaccggc tatgtatcgc ttaaaattat
     4681 gcgtgaagag aatttagcga aaaacgcaca agagcgtggc gaatacttaa ctaacgcatt
     4741 acgtgaatta agcaaagaat taccttgtat tggcaatgtg cgtggtaaag gcttaatgat
     4801 gggaattgat attgttgatg aacgtcagcc aaaagatgca acaggtgcat acccgcgtga
     4861 ttgcgattta gccgttgcaa ttcaaaaata ctgctttaaa aacaaattgt tattagagcg
     4921 tggcggacgt ggcggtaatg tggtgcgtgt tctttgtgcc gtgaatatta cccaagcaga
     4981 atgtgaagag tttattaaac gctttaaaca atctgttgct gaagcagtga aagcggtgcg
     5041 tggttaatag ttagaatggt aggagcgaaa catttttcgc cctaatgtaa aaaggggcga
     5101 atatttattc gcccctacac caataggata gaaataatgt caaacctaga aaaacacaga
     5161 caatccctgt tttgtagcga tccaaaatcg attgcggatt atgaatcggc aatgaataac
     5221 gctgtgaaag cggtttcaga ctggctgaaa gaagaaaaaa tgtacaccgg tggctcaatt
     5281 aaagagttgc gtgccaaaat caacggtttt aacccaaccc aagctggtgt gggcgtgcaa
     5341 aaatcactgg agcatttggt ggaaattttc ttaaagccaa gcctcaaagt tcaccaccct
     5401 cattctttgg cccacttaca ttgcccgaca atggtaacca gccaaattgc agaagtgtta
     5461 attaatgcca ccaaccaatc aatggactct tgggatcaaa gcccggcagg ttcgattatg
     5521 gaagagcatt taattgactg gctacgtcaa aaagtcggct atggcaaagg aacttcagga
     5581 gtctttacct caggtggtac gcaatcaaac ctgatgggcg tattattggc tcgtgactgg
     5641 gcgatagcga accattggaa aaaggcagac ggttcagagt ggtcggtgca agccgacggt
     5701 attcctgccg atgcaatgca aaaagtgaaa gtggtttgtt ccgaaaacgc tcacttctcg
     5761 gtgcagaaaa atatggcaat gatgggaatg ggtttccaat cggtagtgac tgtaccgtca
     5821 aatgccaatg cacaaatgga cgttgaagct cttgcgaaaa cgttggcgga tttaaaagcc
     5881 gaaggcaaaa ttgtggcttg tatcgtcgca accgcaggga cgaccgatgc cggtgcgatt
     5941 gatgatttaa aagcgatccg taaattagcc gatgaacatc aggcttgggt tcacgttgat
     6001 gctgcttggg gtggtgcatt attactgtcg aaagatttcc gccacttctt agacggcatt
     6061 gaattaaccg attccattac ccttgatttc cacaagcatt tcttccaatc aatttcgtgt
     6121 ggggcattct tgctaaaaga tgaagcgaat taccgcttta ttgattacaa ggcagactac
     6181 ctgaattcag aatatgacga agaacacggc gtgccgaatt tagtgtcaaa atcattgcaa
     6241 actacccgcc gttttgatgc gttaaaatta tggtttaccg ttgaagcctt gggtgaggag
     6301 ctatacgctt caatgatcga ccacggggtt tatctttcta aagaagtgga agcctacatt
     6361 aatgccaccg atggcttgga aatgttagtg ccggcacaat ttgcctcagt cttattccgt
     6421 gtcgtaccac aaggttaccc ggcagaattt gtggatacct taaaccaaaa tgtggcagat
     6481 gagttatttg ctcgtggcga agctaacatt ggtgtgacca aagtcggtga gcatcaatca
     6541 ctgaaaatga ctactttaag cccgattgca acgcttgaaa acgtaagagc attattagct
     6601 caggtgttgg cagaagcaga tcggattaaa gattcgattg taaatggaac ttatgttccg
     6661 ccaattgatt aaactgcgtt aaaaataaaa aggtgttttc gacatttatt tgtgttttaa
     6721 tgtttgcatt cggtagtctt tatcgaatgc aaattttttt aacaaggagt ttttatgaaa
     6781 aaagtcctgg gtttaacatt gatggcaatg gcgttatcgg cgtgtaattc aactgcttcc
     6841 aacggttctt cacaagcaaa tacaggtgtt gcaccggcga atgtgattag cgtgaaacag
     6901 gtgttagcgg cagcagatga cagctacgtg acggtagaag gcacactctt aaacaaagtc
     6961 ggtgacgaaa cttacttatt taaagatgcg acagggcaaa tccgtgttga gattgacgat
     7021 gaagtatggg caggtcagca cgttggtagc gaaggcaata aagtccgttt atacggagag
     7081 attgacaaag gtttcaataa aaccgagtta gatgttaaaa cactcactgt tctgtagaag
     7141 atcaaacctt aatttggttc cccgccttgt ttggcggggt ttttacgtta attaatcaaa
     7201 ccatcctttt gcaaaaaaac gcaaaattat accgcttgtt ccttcaatat tgtgctacaa
     7261 gatgctgtga tttgctgcaa aatagcggtg taatcagtct cttttaaacc aatattaccg
     7321 aaatagtgca tttttacatc acgaatccca cagaactcaa acagcccttt tcccagcgta
     7381 tgttcaaatg ctgctaaaaa gccttttcgt tcatattttt cattggaatt accgagcgtt
     7441 acaaattgtt gcattttttt gccggtcagc aagccgatac tttcaatttc cccgttacga
     7501 taggcaaaat cataacttaa caccctgtct aaatagcctt ttaaaattgc cggaaagccc
     7561 atccaccaaa gcgggtaaat taacgtaatc acatcagctt caagccaata ttgatgctca
     7621 attgccacat ctgcttcata gtgtttactg agtgtgcctt gaaattccgc ccagtctaat
     7681 atcggcttga agttgagttg gtagagatct cgtacaacca ccttatttgg aacggaagct
     7741 gctatcgttt tttccaaaat cgcatggtta aagctggagg gattcgggtg tgcgtaaata
     7801 atcaggtgat tcatagcgtt ttcctttact gtgtcgaggc agctactaga agattttagc
     7861 gaaactttct ttgatgaaaa tcaatatttt ggcgaatata ccggcaaata ccccgtttga
     7921 ggaatgaacg gttttaagtg aacattagat aatttagcct attatagtga tgagtaaaaa
     7981 ggtgttttct tgactgatta tcctaatcaa tcacttcctc gccgtagctt tttgcgaggg
     8041 caatttttag actcgttaaa aagccaaaaa gtcagtcagc aagggtatga gccgattcgt
     8101 ccgccttggg ctaatttagc aaatttttta gaaaaatgca ccgcttgcgg taactgcatt
     8161 caggcttgcg aaacccagat tattgtaaaa ggtgctgcgg gctaccctga aattgatttt
     8221 agccgtggtg aatgcacttt ttgtgaaaaa tgtgtgcatt cttgcgaggc agaggtattc
     8281 cgagcagttt cagaacagcc ttggagccat aaaattgaga ttcaagccgg ctgtttatta
     8341 aagctcggaa cggaatgccg aagctgtggc gatagctgtg agatgagagt gattcgtttc
     8401 cgcccgagtt taggtggcat tgccgaaatg gtattaaatt tggaaagctg taatggctgt
     8461 ggggcttgtt tgagcgtttg tccgacaagt gcgataaaaa ttcagccatt acaaacacag
     8521 gcaaacagag atgagtgaaa aattatccga acaggaaaac tggtatgtgt gcagtctcgt
     8581 ggtgcaagca aaaccggaaa aattggaaga agtaaaagcc gagattctga agattcctca
     8641 taccgaaatt cacggtgaga aaacagatga aggcaaattg gtcgtgacga ttgaaagcaa
     8701 tgtgcattta gccctttccg atcgaatcga tcaagtaaga gatattaaag gcgtgattgt
     8761 ggtgtcttta atttctaatt acattgatga acagtgatta atgattattt ttgaagccaa
     8821 acgtgggaca tagttatgga actcaatcgt agagatttta tgaaagcgaa cgccgctgtg
     8881 gcagctgctg cagccgcagg aattatgatt cctgtgaaaa acgttcaggc agatgacacc
     8941 ggtattcgtt gggataaagc cccttgtcgt tactgtggta caggttgtag cgtgctagtc
     9001 ggtactaaag acggtaaagt agtggcaacc caaggtgacc cggatgcaga agtaaaccgt
     9061 ggtttaaact gtattaaagg ttatttctta tccaaaatga tgtacggtgc agaccgtatg
     9121 caagagccaa tgttgcgtat gaaagacggt aagttcgaca agaacggcga tttcacgccg
     9181 gtttcttggg atcaagcctt tagcattatg gcggagaaga ttaaaaccac tattaaaaat
     9241 gacggcccga atgctgtagg tatgttctca tcaggtcaaa caaccatttt tgaaggttat
     9301 gcgaaagtga aactttggaa aggtggtttc cgttcaaata cgattgaccc gaatgcccgc
     9361 cactgtatgg cgtccgctgc ggttgccttt atgcgtacct ttggtatgga cgagccgatg
     9421 ggctgctata acgacatcga aaaaaccgat gcgttcgtgc tttggggttc aaatatggca
     9481 gaaatgcacc cgattttatg gtctcgtatt tctgatcgcc gtttatcaga caataaagtg
     9541 aaagtggtgg taatgtccac ttacgaacac cgttcgtttg aattagccga tacaccgatt
     9601 atcttcaaac cacactcaga tttagcaatt ttaaactaca ttgcgaacta cattatccaa
     9661 aacgataaag taaattggga ttttgttaac aaacacacca aatttaaacg gggtgaaacc
     9721 aatatcggtt acggtttacg tcctgaacac aaattacaac aaaataccaa tgcgaaaact
     9781 gccggtaaaa tgtatgacag cgattttgaa gagtttaaga aaatcgttgc cccttataca
     9841 ttagaagaag ctcaccgtat ttcaggcgtg ccgaaagatc agcttgaaac attagcgaaa
     9901 ttatatgcag atcctaacca aaaattagtg tcgttctgga cgatgggctt taaccaacat
     9961 acccgtggtg tgtgggtaaa ccatatgatg tacaacgtcc atttattaac cggtaagatc
    10021 gcattagaag gttgtgggcc gttctcactc acgggtcagc cgtccgcttg tggtactgcc
    10081 cgtgaagtgg gtacatttat tcaccgctta ccggcagata tggtggtcac aaatccgaaa
    10141 caccgtgaga ttgtagagaa ttcttggaaa ttaccggctg gagcaattcc tgatgtaccg
    10201 ggctttcacg ctacagctca aagccgtgcc ttaaaagacg gcaaaatgaa attcttatgg
    10261 cagatgtgta ccaacaatat gcagggcggc ccgaatatca atgaagagat cttcccgggc
    10321 tggcgtaatc ctgaaacctt tattgtggtt tcagatccgt acccatctgt ttcagcagtg
    10381 gctgctgact taattcttcc aacctgtatg tgggtggaaa aagaaggggc ttacggtaac
    10441 gcagaacgcc gtacccaatt ctggcgtcag caagttaaag ggccggcaaa tgcccgttca
    10501 gatacttggc agttagtaga gttctctaaa tacttcaaag tagaagaagt atggccggaa
    10561 gagttattag ctaaagcacc ggaattgcgt ggtaaaactc tatacgaaat cctttaccgc
    10621 aacggcaaag tagatagcta ccaagtgcca actaacattc cgggctatat gaatgacgaa
    10681 gcagatcact tcggttacta cattcaaaaa ggcttatttg aagagtatgc ggaatttggc
    10741 cgtggtcacg gtcacgattt agccgacttt gacacctacc acaaagtacg tggcttacgt
    10801 tggccggtgg taaaagacga gaaaaccggc gaatacaaag aaactttatg gcgttaccgt
    10861 gaaggctatg acccatacgt taaagccggt gaagaagtgg cattctatgg caatgcggac
    10921 aaaaaagcag tgattttagg tgtgccatac gaaccacctg cggaagcacc ggacgaagaa
    10981 tatgacttat ggttctgtac cggtcgtgta ctagaacatt ggcacaccgg tacgatgacc
    11041 cgccgtgtgc cggagttaca taaagcattc ccaaccaact tggtttggat gcacccgaat
    11101 gatgcgaaaa aacgaggctt acgtcacggt gataaagtga aagtgatttc acgccgtggt
    11161 gaatatgtat cgaacttaga tacccgtgga cgtaataaat gtccggaagg tttgatttac
    11221 tcgactttct tcgatgccgg tcagttaatc aacaaagtga cacttgatgc gactgatcca
    11281 atttcatttg aaaccgactt caaaaaatgt gcggttaaag tggtgaaagc ttaattgtag
    11341 gggcaaatta tttgcctcag acaagcggtc aaatttgcaa atttttttac aaaaacgacc
    11401 gcttacctaa gaggaaccca caatgaaaat ggatccaaat cgtcgccagt ttttaaaaaa
    11461 tgcaacccgt accgcagccg gtgtttgcgg tgtaggaatg attttagggc tacagcaaca
    11521 acaaagtttt gcccgtcaag gggtagcact acgcccaccg ggtgcattgc cggagcaaga
    11581 tttcctgagt gcttgcaccc gttgcggaca atgtgtgcag gcttgtcctt acgatatgtt
    11641 gcatttggca tcgcttattt caccagtgga agccggcacg ccatacttta ttgcacggga
    11701 taaaccttgc gaaatgtgct tggatattcc ctgtatgaat gcttgcccaa ccggggcatt
    11761 aagcgaagag ctaaaagaca ttgacgatgc acgaatgggg cttgcggtgt tgctcgacca
    11821 cgaaacttgt cttaactggc aaggcttgcg ttgtgacgtg tgttaccgtg tttgtccgtt
    11881 aatcgacaaa gcgattactc ttgagaaagt gcataacgac cgtacctcga ttcacgccaa
    11941 actgattccg accgtgcatt ctgatgcttg caccggttgc ggtaaatgtg aacaggcttg
    12001 cgtattggaa gaggcagcga tcaaagtgtt accgatggat ttagccaaag gcttgctcgg
    12061 tcgtcactat cgtttaggct ggcaagagaa acaaaatgcc ggtaaatcgc tgattgaaga
    12121 tgttcaccca gagggtttac gcccagctta tgatgccaga atgccggaag gcttacacga
    12181 gccggtgtat cagcatatgg aagtaaaacc tgatgtgaaa gtggctacgc caagtcgggc
    12241 gacacaaaac tatgtgccga actctacgac ggtggaagct ccggagcatt tccctgattt
    12301 agacttgaat ctcaaggggg tgaaataatg gcagccaatt ctccaaaaaa tgcgggctta
    12361 gaggctcgtc agaaactagg ttggtggcac gcttaccgct ttttgatttt aagacgctta
    12421 agccaactca gcattatttt gatgttttta agcggcccac tttggaatgt ctggatttta
    12481 aaaggaaact acagcggtag cttattacta gataccgtgc cgatgacaga cccattaatg
    12541 accgctgaag tgctggcaac cggctatcgc cctgaatgga cggtattggt tggggcgtta
    12601 attatggtgg cgttttacgg cattgtcggc agcaagctgt tttgtagttg ggtctgcccg
    12661 atgaatatgg taacagatac tgctgcttgg ttaagacgca aactcggtat tcgccaaact
    12721 gctaaaattc cacgcaattt acgctatgtg attttggcgg tgattttagt cggtagtgcg
    12781 atttccggaa cactattgtg ggagtggatc aacccggttg cggctctcgg tcgggtgttt
    12841 gtattcggtt taggggcaac gctttggctg gttttagtgg tgttcttgtt tgacttattg
    12901 gtggcagaac atggctggtg tggtcatctt tgcccgattg gtgcaacgta tgccttaatt
    12961 ggggcgaaaa gcctgattaa agtcaaagtg gtagatcgta accgttgcga taattgtatg
    13021 gattgttaca acgtttgtcc ggaacctcaa gtgttgcgtg tgccgctaca cggtaaaccg
    13081 gaggaaagca cggttatctt atctaaagat tgcattacct gcggacgttg tattgacgtt
    13141 tgtgccgaaa atgtatttgc cttcggaatg cgttttcaag gcagtattga tgtgaaaaat
    13201 atttaatttt tatctttttg aaaacaagaa ttttaatgga gtgaacctca aatgagaaaa
    13261 tatctcgcct tcattttagc cgtgatgtcc ggctttgcaa tggcggaagc ccctaagtta
    13321 tccggatcaa ttgatgagac aaccgaaagt gttgcaccgg gatttcataa cccacaaaaa
    13381 gatgtgggca cgattccaac cactttccct ttccaaccac cgcttgttcc acatagtatt
    13441 cgtggcttac aagtgagcaa aaacgtaaac cattgtttag gttgccacgc tattgaacca
    13501 tctaaaacca caggtgcgac ccgtttaccg ccaagccatt ttaccgaccg tgatggcaag
    13561 gtgtacgaaa acgaatctcc tcgtcgttat ttctgtttgc aatgccacgt gcaacaaact
    13621 gatgtaaacc cgattattca aaataaattt gaatctgtac gtgaatctca agctaaataa
    13681 ggagtaagta atgttgagaa gattttgtaa ctggttacgt agcccaagca aaatggcaat
    13741 tggtgctgta atccttattt ctgcattagg tggtattttc gcttggagtg gttttaatgc
    13801 agggttagca atgacaaata ctgaagagtt ttgttcagat tgccatatga acgatgttgt
    13861 gccggaatac cgtgcctctg ctcactattc aaaccgcagc ggtgtgaaag cgatttgttc
    13921 agattgccac gtaccgcacg aattctttcc aaaatggcaa cgtaaaatca tagccgcaaa
    13981 agaagtttat gcacacttta ccggtaaagt agataccaaa gagaaatttg aagctcatcg
    14041 tggcgaaatg gcagaacgtg aatgggcacg tatgaaagcg aacagctctc aagagtgccg
    14101 taactgtcat aattttgatg atatggactt cactcaacaa aaaaacattg cgcagcaaat
    14161 gcacgcattg gcacaagagc aaggtaaaac ctgtattgac tgccacaaag ggattgcaca
    14221 caatctccca catatggaag cgatccagaa aaactttatc cctgatgatt tgctgaaaaa
    14281 agcagaagag aagaaataac ttaacgtgtt tcaatagaaa accctcaatt tccattgagg
    14341 gtttcttttt agtagccaag ttagtaacca atggcattga catttggtaa aaaatcgttg
    14401 gaatttaacc gcttgacgac cgtttctatc gtgccgtttt cgtgcaattc aatttcacgc
    14461 cagccttgtg gttgtaagtc taaggtaaac tggtcgcaat tcggcttaaa ttgaatgcaa
    14521 gtagatgggg tggcataaat cggaatacca tgccaaatat catcaacctg ctgatgaata
    14581 tgaccatgca caatcgcttt tacattctta aattttgcga aaatctcgga taattcattg
    14641 ctgtttttta agctatgctg atccagccac gctgagtttg tcggcaaaat attgtggtgc
    14701 agagcaacca aggtaaaccg ttgcggatat tgtgccaatt tttcttctaa ccatttaagc
    14761 tgtgagtaag agagttcgcc ataaggcata cctaccacct gggtatttag catcagaagc
    14821 tgccattgct caccgagtaa aatttgttta tggggaagga tatgtttata ttgcgccaaa
    14881 atttctgaca tactcggctg aacatcgtga ttcccctcta gccacactat cggcgagttt
    14941 agcgaattag ttatctgtgc aaaatagtga taaccagcaa tattgttatc ttgaatcaaa
    15001 tcacctgtgg caagaactag atcaaaatat tgcttcgctt gtttgtttat ttgctcaata
    15061 actgccgaaa aactttttac tgttttgaca ttaagtagag tttcctccgg attggagaaa
    15121 aggtgagggt cagttatttg taataactta attacccctg ttacgggtaa cttaatatat
    15181 tcgtgcattc gttttgcatc cattcaaatt ctagtaattt ttaactggtg agattctatc
    15241 agtaagctaa aagtaaaaat gtggactatg ccgcattttt gaaaaaaagt gagattaatc
    15301 aaaaaaaatt ta
//
LOCUS       DANLXB010000052        15154 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLXB010000052 DANLXB010000000
VERSION     DANLXB010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15154
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            12..284
                     /locus_tag="PXD41_001016"
     CDS             12..284
                     /locus_tag="PXD41_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL6288564.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            293..418
                     /gene="ykgO"
                     /locus_tag="PXD41_001017"
     CDS             293..418
                     /gene="ykgO"
                     /locus_tag="PXD41_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL6288565.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            598..1371
                     /locus_tag="PXD41_001018"
     CDS             598..1371
                     /locus_tag="PXD41_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6288566.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            1454..2170
                     /locus_tag="PXD41_001019"
     CDS             1454..2170
                     /locus_tag="PXD41_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL6288567.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            2180..2932
                     /locus_tag="PXD41_001020"
     CDS             2180..2932
                     /locus_tag="PXD41_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL6288568.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(3148..3681)
                     /locus_tag="PXD41_001021"
     CDS             complement(3148..3681)
                     /locus_tag="PXD41_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL6288569.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3787..4128)
                     /locus_tag="PXD41_001022"
     CDS             complement(3787..4128)
                     /locus_tag="PXD41_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL6288570.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(4152..4901)
                     /gene="trmB"
                     /locus_tag="PXD41_001023"
     CDS             complement(4152..4901)
                     /gene="trmB"
                     /locus_tag="PXD41_001023"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL6288571.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4911..5861)
                     /locus_tag="PXD41_001024"
     CDS             complement(4911..5861)
                     /locus_tag="PXD41_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL6288572.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(6007..7026)
                     /gene="hemB"
                     /locus_tag="PXD41_001025"
     CDS             complement(6007..7026)
                     /gene="hemB"
                     /locus_tag="PXD41_001025"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL6288573.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(7107..7862)
                     /gene="tatC"
                     /locus_tag="PXD41_001026"
     CDS             complement(7107..7862)
                     /gene="tatC"
                     /locus_tag="PXD41_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL6288574.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7849..8493)
                     /gene="tatB"
                     /locus_tag="PXD41_001027"
     CDS             complement(7849..8493)
                     /gene="tatB"
                     /locus_tag="PXD41_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL6288575.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(8497..8718)
                     /gene="tatA"
                     /locus_tag="PXD41_001028"
     CDS             complement(8497..8718)
                     /gene="tatA"
                     /locus_tag="PXD41_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL6288576.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8829..10466)
                     /gene="ubiB"
                     /locus_tag="PXD41_001029"
     CDS             complement(8829..10466)
                     /gene="ubiB"
                     /locus_tag="PXD41_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL6288577.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(10540..11517)
                     /locus_tag="PXD41_001030"
     CDS             complement(10540..11517)
                     /locus_tag="PXD41_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6288578.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11678..12325)
                     /locus_tag="PXD41_001031"
     CDS             complement(11678..12325)
                     /locus_tag="PXD41_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL6288579.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(12516..13268)
                     /gene="ubiE"
                     /locus_tag="PXD41_001032"
     CDS             complement(12516..13268)
                     /gene="ubiE"
                     /locus_tag="PXD41_001032"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL6288580.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13613..14566
                     /gene="corA"
                     /locus_tag="PXD41_001033"
     CDS             13613..14566
                     /gene="corA"
                     /locus_tag="PXD41_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL6288581.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
     gene            14719..>15154
                     /locus_tag="PXD41_001034"
     CDS             14719..>15154
                     /locus_tag="PXD41_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL6288582.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLS"
BASE COUNT         4330 a         3361 c         2931 g         4532 t
ORIGIN      
        1 ctggagaaaa tatgaaaaaa gggattcatc ctgaaaatta tcgtgaagtg ttgttctatg
       61 atgcctcagt gcaacaaggc tgggttatcc gttcttgtgc ggcaaccaac aaaacaatgg
      121 tatgggaaga tggcaaagaa tacccacttt acaccttaga tacctcatcg gcgtctcacc
      181 ctgtttacac aggtaaacgc cgtgaagtga atacagaagg tcgtgcaagt caatttaaag
      241 atagatttaa aggctttgct tcaacgcttt caaatcaaaa atagaggata aaatgaaaat
      301 cttaaactca cttaaaaccg caaaatcacg ccacccggat tgccaaattg tcagacgcaa
      361 aggcaaactt tatgtgattt gcaaaaccaa cccgagattt aaagctcgtc agcgttaaaa
      421 accagcacct taataagcta atttattaag gtgtttttta tttcatcttc tcaatattac
      481 ctattttaac cacatcaacg attttattat ttcttattcc atttagttat ttgcaagcgg
      541 tcaattttcc ccttaaattt gcaaaaaatt tattttacca attaaaagga aatgattatg
      601 ttgaaaaaat tatcaattgc tgcattagct cttacccttt ctgtttctgc atttgctaaa
      661 gagagcctac ttgagcgtat aaacaacaaa gggactatta ctgtgggtac ggaaggaact
      721 tatgcccctt acacctatca cgatgcgagc ggtaaattaa ccggttacga tgtagaagta
      781 acccgtgcgg tggctgaaaa attagacgta aaagtggaat ttaaagagac acaatgggac
      841 gctatgttag ccggtttaaa aggtgagcgt tttgacttag tggcaaacca agtggcttta
      901 accagcccgg aacgtcgagc gacatttgat aaatccgaat cttacagctg ggacggtgcc
      961 gccttattag tgcgtgaaga tgaaactaaa atcaaaaccc ctgctgatgt aaaaggcgtg
     1021 aaaactgccc aaaccttgag ctcaaactat ggcgagattg cccgtgaaaa cggtgcagac
     1081 atcgtgccaa ttgacggtat ggctcaaggc ttactgttaa ttcaacaaaa acgcgccgat
     1141 gcaactttca atagccactt atcgctatta gattacttga aaaagaaccc gaattccggc
     1201 ttaaaaattg tgtgggaaaa agaagaaaaa gtgggtgcag gcttaattgc gaataaaggc
     1261 aatgacgaag cattagcgaa aatcagcaaa gcaatcgtag aattacgtga agacggcacg
     1321 ttaaaaaaat tgggcgagca gttcttcggt aaagatatta gtgtacaata atccatattg
     1381 gattaggctt ggggcgaatt cgcccctttt atttttaaat ctccctcaaa acgggagatt
     1441 ttaggttttt cagatgttaa acgatctact tctctcaatc ccctttatga cccaagctcg
     1501 ggtcgattta gtgctaagcg gtttttggcc gatggtacaa gcggcatttt tagtctctat
     1561 tccgctggca atcgcctcat ttattatcgg tatgttaatt gccgttgcag ttgcattagt
     1621 gcgaattagc cctgcaacag gcttttttca ccgcttgcta ctgtggctgg taaaaggtta
     1681 tatctcgatt attcgcggca cgccgatgtt ggttcagatc tgtattgtgt tttatggttt
     1741 gcctgcaatc ggcattttta tcgatccgat tccggcggca attatcgggt tttcactcaa
     1801 tatcggggct tatggctcgg aaacgatccg tgctgcgatc tcctccgtgc caaaaggaca
     1861 atgggaagcc ggttatacta tcggtatgac ttatatgcaa acttttcgcc gtatcattgc
     1921 cccgcaagcg tttcgagttg ctgttccgcc acttagcaac acctttatcg gtctgtttaa
     1981 agatacctct cttgcctccg ttgttaccgt aaccgaaatg ttccgggttg ctcaacaggt
     2041 agcaaatatg tcttatgact tcctacctgt ttatattgaa gccggtttga tttattggtg
     2101 cttctgctgg gtgctatttt taattcaggc gagattggaa gtccgcttta accgatttgt
     2161 ggcgaaataa ggaggaattg tgcttaaaat tcgcaatatt cataaaacct ttggcaacaa
     2221 cgctattcta cgcggcattg atttagatat tcaaaaaggg caagtggtag taattttagg
     2281 cccttccggt tcaggcaaaa ccacctttct tcgttgctta aatgcactgg aaatgcccga
     2341 gcaaggcaca ttggaattta gtggtaatgc tccgctgaaa attgattttg ccgtaaaaca
     2401 gagcaaaaaa gagattttag cgctacgccg caaatccggt atggtgttcc aaaactacaa
     2461 cctgttcccg cataaaaccg cattggaaaa tgtgatggaa ggaccggtat ttgtgcaaca
     2521 acaagcggtc gaaattgctc aaaaaaatgc aaaagccctg ttagaaaaag tcggactggc
     2581 ggataaagca gaactctacc cgtttcaact gtcaggcggg caacagcaac gggttggcat
     2641 tgcacgagca ttagcaattc agccggagct gatgttattt gatgaaccaa cttcggcact
     2701 tgatcctgag ttagtgcaag acgtgctaaa tacgatgaaa gaactggcaa atgaaggctg
     2761 gacaatggtc gtggttactc acgaaatcaa atttgccctt gatgttgccg atgtagtggt
     2821 ggtaatggac ggcggtgaaa tcgttgaaca aggctcgcca cagcaactgt ttaaccaccc
     2881 acaacacgaa cgaactaaac gttttttaaa tcaaatcaga gcggataaat aagaaacgat
     2941 agcgctagcg tccacgctag tgctatctaa taaatggtac aagcggttaa ttatgtataa
     3001 attgttatac tgttttggca cgagcgtgga cgctcgcgcc atcgtacagt aaaatcagct
     3061 aacaaggttc cccataaagg ataaataaga caaggctcct taatctttta gattaaggag
     3121 cttattttta gattttagaa atccgattta agccgcagcc catagtccac caaaaatttg
     3181 gtagaacaag ctatttagta gcaataagcc gaaacctagc accattaccg agaaatctaa
     3241 cattcccgtt cttggcagga gcttgcggat aaaacctaac accggttcgg taatttgtgc
     3301 taccgtgtag tctaatgggt ggttgccttg agtgacccag ctcattaatg cacgaatcaa
     3361 ggtggtgaaa aatagaattt gtccgaaggt tttgaccaca cttaataagc cgattaatac
     3421 tgctctgggt aaatctacgc caaacagaat aaactgtaac gttaccaaag cggcggcaat
     3481 taatagtgcc ggaaagcaaa tatttttaac ggttggaatc agcttgccaa ccggtgaaac
     3541 catcggttcg gtaattttaa gtaaggtttg tgaaatcggt aaacgaggat caacccgaca
     3601 aaattgcagc caagttctta gcaccagcac aaaacttaaa aagccaacaa taagcgaaat
     3661 aacaggagct aaaaattcca tctctttttc tctttctata caaaacaagc ggtcgttttt
     3721 tagaaaaaat ttgcaaattt tcagtaaaat ctgaccgctt gtatcttatt aaattaacta
     3781 ggcaaattaa gcttgtgctg ggtagtccca ccaaatatca aataattcgc tcacttgaac
     3841 ctcttttaag ccgttagttt ctaaccaagt tttcactaat tggcggtgag attcatcaca
     3901 tttgcctaat ttttctaagc agactaaacc ttcccagttt aagtagccgt tcgcttcaag
     3961 ggctaaaccg tttggtcgaa tcacttcatc gataaaacga tctacggttt catcaatttg
     4021 gtcaatgcct gtgccttcag caaaggtgaa tttaattaag aaacctaatt cttggtattc
     4081 acctaagtgc atttttttac gttggcgtgc gttacgttga atagccattt tttctctcct
     4141 ctatgaataa atcatttctt tgtaaaatat aaatcccaca ccccgtgtcc taaacgatgc
     4201 cctcgctctt caaatttggt tagcgggcgg aaattcggac gtggaataaa atcattagtt
     4261 gctgatgtat tttgcaactc gctctcaaat tggcgtaata cttcaagcat atgttctgcg
     4321 taattttccc agtcggtggc aaaatgaata aagccgttag ggcttaattt tctgatcaca
     4381 cggctgataa attcaggctg cacaatacgg cgtttgtggt gttttgcttt ttgccaaggg
     4441 tctgggaagt aaagctgtaa gccacctaat gtaccgtcag caatgctgtc tcgcaaaatt
     4501 tcggtggcat cgtggcaaat tactcttaaa ttcttcacgc ctttttctaa cgcataagcg
     4561 atacaagccc ccaccccggg cgtgtgcacc tcaatgccga tatagttgcg attcgggttt
     4621 tgctctgcca tttccaccag cgattttccc attccgaagc cgatttctaa cactaccggg
     4681 ttgttattgc cgaaaatctg ctcaaaatta aagggcattg gctggtaatc taagcctaaa
     4741 tttgcccagt tgttgttcat catatcacgt tgataatcgc tcaaacgacc ggtacgcaat
     4801 acaaaactcc gcacttttcg taaataacgc ccatcttcgg taaactcggc ttgctcaacg
     4861 gttttacgtt ttttatctgc aaaagtctgt ttttctgaca ttttcttgcc ttaaaacttc
     4921 actaataccg aaccccaagt ccagccaccg ccgaatgctt caaggagtag taattgccca
     4981 cgttgaattc gcccgtcacg caccgcttca tctaatgcca ccggcactgt tgctccactg
     5041 gtattggcat atttatcaag ggtaaccacc acttgatcca tttccatctc taattttttc
     5101 gccgttgcgg tgataatgcg taaattcgct tggtgcggaa tcagccaatc taaatcggat
     5161 ttttgtagat tattcgcttc taaggtttct tctaccacgc ttgaaagttg gtttactgca
     5221 attttaaagg tggcattgcc ctgcatttca ataaagccgg aacgctcttc gccacgcttt
     5281 tggcttctta aggttaagtt attttctaaa tccggtgagg cgtgcaagtg ggttgaaata
     5341 atacccagct cttcactcgc ctctaaaatc accgccccag ctccgtcacc aaataatact
     5401 actgtgctgc ggtcggtttc gtctaacatt ctggaattga tgtctgaacc aataaccaat
     5461 gcctttttca cttgcccgtt acgcacgaat tgatcggcaa cagttaaagc atacacaaat
     5521 cctgtacaag ccgctgccac atcaaaagca atcgcgtctt caatctgaag caagccttga
     5581 atttggcaag ctgcacttgg gtaagcgtgg gagttggtag ttgttcccac cacaattaaa
     5641 tcaatgtcat ttgcctcaat tcctgccatt tccagtgctt gttgagcggc ttttgccccc
     5701 attgttgcca ctgtttcgtc aggctcggca atacggcgtt cacgaatgcc ggaacgggtt
     5761 acgatccatt catcagaggt atcgaccatt ttttctaaat cagcattggt acgcaccttt
     5821 gtcggtaaat agcttcccgt tgctaaaatt ctactattca tatttttatt attctcaatc
     5881 aattaaatga taatccgtta ttatagcttg aaaaccaaca aatatatagg ctttacaagc
     5941 ggtcattttt agcaaaaaag ttgcattcac gaacgatttt gcactagaac caccgcttgc
     6001 tagtatttat ttcgcttgag cctcttcgta tagccacttc gctactcgct tggcgaaata
     6061 agttagaata ccgtctgctc ctgcccgttt aaagcagagt aatccctcca taatgcactc
     6121 acgctctttc agccagccgt tttggattgc cgccatatgc atcgcgtatt cgcccgaaac
     6181 ttggtaggcg aaggttggca cgccaaaatt ctctttcaca cgccacacca tatccaaata
     6241 aggcataccc ggtttcacca tcaccatatc tgccccttct tgaatatcca tcgccacttc
     6301 gtgcaagcct tcgttgccgt tagccggatc gacttggtaa gtgtatttat taccgccttt
     6361 taagttgccg gcagaaccta ctgcatcacg gaacggtccg taataattag acgcatattt
     6421 agccgaatac gccataattt gcgtattgat aaaaccgttt tgctcaaggg cttcacgaat
     6481 tttgccgatt cgaccgtcca tcatatcgct cggggcaaca atatccgccc ccgcttctgc
     6541 gtgcgataac gcctgtttta ccaatacttc agtagtcaca tcattcagta catagcctgt
     6601 ttcatcaata atgccgtctt gtccgtgcgt ggtaaacggg tctaacgcca catcagtaat
     6661 cacgcctaat tccggaaatt gagcttttaa agctcgcacg gcacgctgtg ccaacccttg
     6721 cgggttatag gcctcttctg ccatcagtga ttttttcaca tcacccacca cagggaaaag
     6781 agccaccgca ggcacgccat atttaaccag ttctgcggct tcaactaaaa gctggtcgat
     6841 agttaaacgc tctacacccg gcatagaagg cacttgtact cgctgatttt ccccttcgat
     6901 gacaaaaaca gggtaaatca aatcattaac ggtaagttga ttttctgcca ctaagcggcg
     6961 gctgaaatcg tgcttgcgta aacgacgcat acggcgtaaa ggatattggg attgaattac
     7021 ttgcattttt aatttcctaa ttcttaaaat acctattctt gaaataagaa aggcatagca
     7081 aacaggtgct atgccttttc aaaatattac tgtgcaacct gctctgatgg ttcatcatca
     7141 tctttggggc gataaaaccg agcaaatagc acaccaactt caaacaataa acacattgga
     7201 attgccaata atgtttgcga gaaaatatct ggtggggtga gcaacatacc aattacaaat
     7261 gctgccacaa taatataagg gcgttttgcc tttaaatctt cgggtgtggt tacgcctgcc
     7321 caacataaca agataatcgc aaccggcact tcaaagcaga tcccgaatgc cataaaaatg
     7381 gttaaaacga aatcaagata gctactaata tccgttgcca ttgttacccc ttccggagcg
     7441 gtagaggtta aaaagccaaa tacaagcgga aatacaacat aataggcaaa agcgacacca
     7501 caataaaaca gcaatgtgct agataccaat aatgggtaaa ccaaacgctt ttcctgcttg
     7561 tataaagcag gggcgacaaa cgcccaaatt tggtacaaaa taaaaggaac tgataaaaac
     7621 accgaaacca caatggttaa tttaattggg gtaaaaaacg gagtggctac attggttgca
     7681 atcattgttg caccgtctgg taaattgtcc gttaaaggtg ttgccaataa ggtgtaaata
     7741 tcattggccc agtaaaccaa tccgcaaaac accaagagca cacagataaa actacgcagt
     7801 aatcggtttc tcagctcaat taaatgtgta atcagaggtt gagactcatc aacttgcgac
     7861 attatttgcc tccgatttct gcgctgattc tgatgattga ggcgtagcta aatcatcatc
     7921 tggcggatag taagattcca acgttaaaag cgattcgtcc atttctgctt gttcagccag
     7981 ctcatcagcc gaaagtggct tttctgtccg cgtaacatta agttgctcag ataaactatc
     8041 cacttcaagc ggtttatttt gcgcattttt ttgcaattct tgcgcctcta acacctggct
     8101 ttcttgctcg attttttgct gaatttctgc gacttgctca tcggttaatt taggaattgt
     8161 gctgctttcc gcagccgttt tttccaactc attttttgca gaattaagcg aatcttgcaa
     8221 ctgggtggct gacattttca gatcttccac cgttttattt aattctggcg aaagggagct
     8281 taaattcaac tcttctgcct ttttaatgct ctcttttaat tcttgcagtt tcagctcttg
     8341 agccagttca ttttgtacgt ttgcggctaa acctcgaatt gtactcaccc agcccattac
     8401 ggtacgaatc gcaatcggca tacgtttcgg gcctagcacc accaagccca caatcataat
     8461 cagtactaat tcagaaaaac ctatatcaaa cacggattaa gcctgctctt tctcttttgc
     8521 tttctgctct gctgaaattg catcttttgc ttccactttt tcaaattcag catctttttt
     8581 ctcatctgcc attgcttttt tgaagccttt tacagattcg cccaaatccg aacctaaagt
     8641 acgtaatttc ttcgtaccga aaagtaatac gatgattgca accacaatca gaagctgcca
     8701 aatactaata ccgcccataa aaactccttt catttaatag ggaatagata aaataaaacg
     8761 ctgtttatta tatgttactt tgacatataa aaaagtaatt ttgcaaaaaa tttgtcaaaa
     8821 acaaccgctt atttgcgttg actcaaaatc aataccagtg gaaataaagt taataacggc
     8881 acacttagcc atatcggcaa agattcaaat ttccaaaatg cgccacagat cacaatcgct
     8941 gaaattgaca gcacaagaaa acggctattt gcgtttgaat tctgtgcttt taaactttcg
     9001 ttaatttccg ctaaacggaa attaatttgc ttttgctctt gtaaggcttt aaacaatgcc
     9061 tccggaaact ccgcaaaatg ctcccgatat tgcggtaaac gttgcttaat gtctcgaacc
     9121 atcgctttca cacctacctg ctcattcagc cagttttgta aaaacggttt tgcggtttgc
     9181 cataaatcca actgtggata aacctgcctg cccaaacctt caatataaag aagtgttttt
     9241 tgcaacaaca ccaactgcgg ctgcacttcc atattaaatt ctcttgccac attaaacagg
     9301 ttgagcaaaa cgtgtccgaa tgaaatttcc gataacggct tagcaaaaat cggctcacat
     9361 acctcacgaa aggcttgctc aaatttatca atatcggtat ccggcggcgt ccagcccgat
     9421 tccacgtgca ttaaggcaac acggcggtaa tctcggttga aaaatgcgac aaaactttcg
     9481 gctaaatagc gtttgtcatt gtggttcaac gtgccgacaa tcccgcagtc aatgccgata
     9541 tattgcggat tttccgggtg ttctctgttc acaaaaatat tgccggcgtg catatcggcg
     9601 tggaaaaaac tgtcacggaa tacttgggta aaaaatacct gcacaccacg ctctgccagc
     9661 aatttcatat cggtgctgtt cgcttccaac tcggcaatgt tagacactgg aatgccataa
     9721 atccgctcca tcgcaatcaa gtttttatgg caaaaatctt gatacatttc aggcacatac
     9781 agcatttcgc tattttcaaa attcgcccga agccgaatgg cattgtgcat ttctttgcgt
     9841 aaatccagct cgtctaaaat agttttttcg tactctcgca ccacttcaac cgcccgtagc
     9901 cgtttgccgt cattcgataa tttcgggata aagtgagcaa tttcatacat caactctaaa
     9961 tccgccttaa tcaccggctc aatgcccggg cgaatcactt ttaacaccac atctttgcct
    10021 gcaagcggtt gattttggtt aaattttgcc gtgtgaacct gtgcaatcga agcagaagct
    10081 aaggcagttt catcaaagtt ttcaaaccaa gtttcaagct ttccgcccaa agcctgctcg
    10141 ataatttgac gagcgatttt gccgtcaaac ggttcaacat tatcttgtag caaggcgagc
    10201 tggtcggcaa gctccggtgc aaacagatca cgtctggtag ctaacatttg cccgagcttg
    10261 atccaaaccg gtccaagctc ttgcaaagcc aaacgtaaac gtacaccgta aggtttgtct
    10321 gaatgttgat tcttcaccca aaacaaagcc ttacgcccta gctttatttt gcgggtaatt
    10381 ggcagattcg gaatggcttc atcaatacca tagcgaagaa aagtgcggat aatatggtaa
    10441 aagcggttga gatttttgat gttcattgaa atatatattt aatggtaatt aggaagattt
    10501 tagcaaaatt ctgtaaaaat ttaaccgctt gttgggctac tatgggtatt tctgctcaaa
    10561 attctcaatt tctttctgta cttccgcaat aagtgtttgt tcagagggga ggtaaagttg
    10621 gtattggctg gcaaaaattt tattctgatt ttccggtagc gaaaatttta ccaccgcatc
    10681 atttttatcg gcacaaagca agacaccaat agtggcattt tcgtgcggca gtttttcaac
    10741 tcggtcaaaa taattgacgt acatctgtaa ttgccccaaa tcttgatggg tgagcttgtg
    10801 ggttttaatt tcaaaaatca caaaacattg aagtaaacgg ttgtaacaaa ccaaatcgac
    10861 aaaaaaatca tcaccgtcta ggtgcaaacg cttttggcgt gcgataaacg agaaaccgtt
    10921 acccaattct agtagaaaat cctgcaaatg cgtaatgatg gcttgctcta aatccttttc
    10981 gtaataagca ctttcccgtt ttagtccgag aaattccaat accatcgggt ctttaatgag
    11041 ctgtttcgga tcaaccggct gctgctcatt tctggcaaca gcaagcacac tttccttatc
    11101 attactgagc aataatcgct cgtatagact actattaatt tgccgttcca gctggcgtga
    11161 actccaatta ttcttacaac tttcagccaa ataaaattcc cttttgtcag aatcggagat
    11221 ttgaattaga cgacgatatt gtgtccaatt caattgcgac cgcagtgcgg tcgcaattgg
    11281 aaacgcacga taaaactggc gataacgctc taattgacgg ctacaaaaac cacttccaaa
    11341 ttctggctca agctcttttg cgagcatttt aatcaggtat gttccataat cagcacgctc
    11401 ttgcccttgt tgctcctgtt caaaaatccg ttttccgatg tgccaataca tcagcacacg
    11461 ttggaaatct accgcacgaa ccgcattttc acgagcttga gcaataattt gtttaatatc
    11521 ttagatcatc gttgtttcta ttaacataaa agcctccgtt ttggattaag tttatgctta
    11581 atctatccgg aggcaatttc tttcactcaa cttttcgagt catatcacaa ttttattttg
    11641 ttaaatttaa ttttgcacaa acgcttgcgt ttgaacatca gctttgctga tggctcgaag
    11701 agcgaacgta gtgagtaaat ttttgctcta atttgagcgc ttgttgggca agttcttcga
    11761 cttggtcata gaaatgcacc gcctgtaaac gatgcaccaa caccggtctt tcttggatta
    11821 aattctcaac caaatgttga ttattttgct caaattgagc ttttacttta cctagcaatt
    11881 ttttagcaag atcggtgcta gtttgagcca ctacatcgcc aacaaaaggg gaaagcagtt
    11941 cggcagggtc tttttcgagc tgttcaagta atgcagtgaa atgttgcaac acttgaatat
    12001 cgcccgtcag caccaacgat ttattattaa tcagctcggt taatttttgc ttatccgcta
    12061 gtttcggcag ggtgtcaaat gccagttgca ccgtacaatc tgcttccccc tcgtagttgc
    12121 caagccaatc ggttcggctt tcgctaaaca acacaaaaaa gtcgatttta ggcgaagtta
    12181 gggcgatttt tagcactttt ccggacaatt tacgcaaatt cggctcaata tgaggcgagc
    12241 gtttaagtaa cgcattaaaa gcggtttcaa tcagaccaaa ggtaaattgc gggagcatta
    12301 attgttgttt tacattattt aacattcgta cctacttacc ctcttcactt ttgggagaag
    12361 gatagattgt tcttcattaa gaagcaaaat cagggagagg ggtatttgca aaatattgaa
    12421 taaatatgac cgcttgcccc ctctctctgc ttatttcgct aaacgctcat aagcggtctc
    12481 tctcccacaa agggagagag tcatttaaga gaaaactaaa atttataacc tctgtgtaat
    12541 gccacaatgc cggcacttaa gttgtagtaa ttcacgcttt caaagccagt ttgttccatc
    12601 attgctttta gctcgtcttg tttcgggtgc attcggatcg attcagctaa atagcggtaa
    12661 ctttcggcgt catttaccac cacttcgccc actttcggca aaatattgaa tgagtagaaa
    12721 ttataaagct ggctgattgg gtcgataatc ggttttgaga attccaacac aagtaagcga
    12781 ccgcccggtt ttagcacgcg gaacattgaa cgtagggctt tgtctttgtc ggtaacatta
    12841 cgcaagccaa aactaatcac aatacaatca aaagtgttat cagcaaaagg caagcattcg
    12901 gcattcgctt gaacgtagct cacatttcca accacgccta aattgcgtaa tttttcccgc
    12961 ccgacttcca acattgagct gttaatatcg gctaaaatca cctcaccact ttcaccaaca
    13021 atgcgagaga attttgcggt aaaatcaccc gtgccgccgg caagatccag cactttttgc
    13081 cctttacgca cgccactgca atcaatggta aagcgtttcc acactcgatg aatgccgaaa
    13141 gaaagcaaat cgttcattag gtcatatttg cctgccaccg agtgaaacac atttgcgacc
    13201 agttgctgtt tttcttcttt cgctacggtt ttaaacccaa agtgggtggt ttctgccgat
    13261 tgttgcactt cttgttgcac ttcatcttta ggtgctaatt gttctacatc gctcattttc
    13321 ttgtctctag ttgcaaaatt taggcgtaac catagcaaaa aagcggtcgt ttttctttaa
    13381 ctttttgcaa attttcttaa gtaaataacc gctttcttga ctagaaaagc caaattctgt
    13441 aacattcgca cactattttt tcttgaggat tacacatttt ggacagtcat agtcgatact
    13501 tacccgttta acctatcttg tctaacctca atgttaccga caaggtcggt aatgctcgcc
    13561 tagtatcttt gttccttttt gttccaagcc tcctaactat ttggagctaa acatgatccg
    13621 tgcttttgga ctagataacg catgtttaat cagcgttgat gaaactaacc caactttatt
    13681 aaatgatgcg atttggattg atctcatcga tccatcagaa gctgaacgaa ccgtattaga
    13741 aaaccgctta gaccaaacac tcgctgaaga acgtgaattg gaagacttag aggcgtctgc
    13801 ccgtttcttt gaagatgaag acggtttgca cctgcactcg ttcttttact gcttagatga
    13861 tgacgattac gccgatattg ccactgtcgc cttcactatt cgtgacgggc gtttgtttac
    13921 cttgcgtgat cgggatttac ccgcatttcg cttgtatcga atgcgttccc gccgtgagaa
    13981 attgattgac agcaacgcct atgaactctt actcgattta tttgagacca aaatcgagca
    14041 gcttgcagac gtaattgaag aagtctatgc tgacttagaa aaattaagtc gggttattct
    14101 aaacggtcag caagaaaatg agaatttcaa tgatgccctt tctcgcttaa ctgaatttga
    14161 agatgcaagt tcaaaagtgc gtttatgttt gatggatacg caacgggcgt taagtttctt
    14221 actgcgtaaa acccgtttgc cgaataatca gctagaacaa gcccgtgaca ttatgcgaga
    14281 tattgaatct ctgcaaccgc acaatgaatc cttgttccaa aaagtgaatt ttttaatgca
    14341 agcggcaatg ggttatatca atattgagca gaaccgaatt atgaaattct tctcggtggt
    14401 gtcagtgatg ttcctacctg ctacgctggt tgcttctact tacggtatga actttgaatt
    14461 tatgccggaa cttcatttcc aatatggcta ccctatggcg attggtttaa tgattgttgc
    14521 cgcctccgcc ccttatcttt attttaaacg taaaggttgg ttataattta tttttaaagc
    14581 ctatagttga ataacttagg ctttcttatt ttaatgaata tgttcacctc taaaaacaaa
    14641 taaagattaa aactgtttac ctattattta ttcacatata tactgtgaga tattcttttc
    14701 ataggcagga gatctattat gctaagtaag ctacaacgct ttaccttaat gataaaaagc
    14761 accatcatta agcatccact ggaaatttta ttcgttactt acgtcacgat tttacttatc
    14821 aataatgtga gcgactacga attaatcaaa cgctttcaaa atctaattgc tctttttcct
    14881 atttgcttta ttttgcttta cctgatacgc gataccaaag cttattggct attcgctccg
    14941 attccgatag caatcgtctt tttctttggt caaattaatt taacattatt ggaagattct
    15001 cgttattggg ctaccatatt ttgtgtattc ctttgtttga tcagtcaata ttggtacaaa
    15061 aacaaccatt attttgtagc cggaacaact aataaattag ttaacattgt ctttgctaca
    15121 gttttatctg gcattatttt tgcaacatta agcg
//
LOCUS       DANLXB010000053        14940 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLXB010000053 DANLXB010000000
VERSION     DANLXB010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14940
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            160..888
                     /gene="fabG"
                     /locus_tag="PXD41_001035"
     CDS             160..888
                     /gene="fabG"
                     /locus_tag="PXD41_001035"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6288583.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            951..2096
                     /locus_tag="PXD41_001036"
     CDS             951..2096
                     /locus_tag="PXD41_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL6288584.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            2110..3015
                     /locus_tag="PXD41_001037"
                     /pseudo
     CDS             2110..3015
                     /locus_tag="PXD41_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            3038..4180
                     /locus_tag="PXD41_001038"
     CDS             3038..4180
                     /locus_tag="PXD41_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL6288585.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            4229..4444
                     /locus_tag="PXD41_001039"
     CDS             4229..4444
                     /locus_tag="PXD41_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6288586.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            4725..5216
                     /gene="rplJ"
                     /locus_tag="PXD41_001040"
     CDS             4725..5216
                     /gene="rplJ"
                     /locus_tag="PXD41_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL6288587.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            5275..5643
                     /gene="rplL"
                     /locus_tag="PXD41_001041"
     CDS             5275..5643
                     /gene="rplL"
                     /locus_tag="PXD41_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL6288588.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(5750..6580)
                     /locus_tag="PXD41_001042"
     CDS             complement(5750..6580)
                     /locus_tag="PXD41_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6288589.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            6806..8347
                     /locus_tag="PXD41_001043"
     CDS             6806..8347
                     /locus_tag="PXD41_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL6288590.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            8350..9138
                     /locus_tag="PXD41_001044"
     CDS             8350..9138
                     /locus_tag="PXD41_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL6288591.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            9151..10408
                     /locus_tag="PXD41_001045"
                     /pseudo
     CDS             9151..10408
                     /locus_tag="PXD41_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(10487..12496)
                     /locus_tag="PXD41_001046"
     CDS             complement(10487..12496)
                     /locus_tag="PXD41_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6288592.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(12506..13843)
                     /gene="rimO"
                     /locus_tag="PXD41_001047"
     CDS             complement(12506..13843)
                     /gene="rimO"
                     /locus_tag="PXD41_001047"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL6288593.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(13998..14690)
                     /gene="mtnN"
                     /locus_tag="PXD41_001048"
     CDS             complement(13998..14690)
                     /gene="mtnN"
                     /locus_tag="PXD41_001048"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL6288594.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(14748..14939)
                     /locus_tag="PXD41_001049"
     CDS             complement(14748..14939)
                     /locus_tag="PXD41_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL6288595.1"
                     /translation="MTELETKVAFQELIIEELNQALIEQQFAIDKLQTQIRHIAEKLK
                     GAQLSQVASQAEETPPPHY"
BASE COUNT         4280 a         3087 c         3340 g         4233 t
ORIGIN      
        1 ttactgtaaa gattgctagt gagatattag atcggagtaa agaattatct cgtagaatat
       61 taaaaagttt agaacaaaaa aatattctca cttggcacgg cttaagtcca aaagatccaa
      121 cccaatacta cacactcaag aaatagtagg aaatataaga tgaataatac agttctcatc
      181 accggctcaa gccgtggtat cggtaaagcg attgctttaa cccttgcaca acaagggttt
      241 gatattgtgg tacattgccg ttctcgtgtg gaagaagcgg aagcggtggc acaagcggtc
      301 agaaatctcg gaaaaaatgc cagagtgtta cagtttgatg tggcggatcg tgaaaaagtg
      361 cggtcgattt tagaggcaga tgtggaacaa catggtgcct attacggcgt ggtgctaaat
      421 gcagggctta cccgtgataa cgcctttcct gctttaaccg atgaggattg ggatagcgtg
      481 ttgcgtacca atttagacgg tttttataat gtcctgcacc cgattatgat gccgatgatc
      541 cgtcgccgta aagcaggcag gattgtctgt atcacctcgg tttccggctt gatcggcaac
      601 cgtgggcagg tcaattacag cgcttcaaaa gccggcatta ttggtgcggc aaaagcactc
      661 gccatcgagc ttgccaaacg taaaatcacg gtaaactgcg tggcgcccgg cttgattgat
      721 accgatattc tggacgaaaa cgtcccaatc gaagaaattc tcaaaatgat ccccgcagga
      781 cgaatgggcg atcctgatga agtggcacac gccgttgcgt ttttaatgga tgaaaaagcc
      841 acttacatca cacgccaagt catcgctgtg aatggtgggt tgtgttaact ttaggataat
      901 aattcgtagg ggcggatcca gtacccgccc gaagccaaaa agagataaat atgaaacgag
      961 tcgtcatcac cggaattggt gtggttaccg cttttggtaa agagtgggcg gaaattcacg
     1021 gctatcaacc gccgaaacat tggaaccgca agcagttgcg cagccttggg cgagtgtcgc
     1081 aatttgtggt ggaggccagc gagcgggctt tagcacaggc cggtttgttg gacgaaaacg
     1141 gcgtgatttt cgactggcta aaagacaggc gaatgggcgt ggcgtgtggc tcgtccacag
     1201 gctctaccaa tgacatcaaa gatgccgccg aattgctgat gaccggcaaa tcggacggtt
     1261 tcaatgccaa cacctatgtg cgaatgatgc cccacaccac cgctgccaat attggcattt
     1321 tcttcgggct gacagggcgg attatcccga cttccagcgc ttgctcctcg ggcagccaag
     1381 gtatcggtta cgcttacgaa gccattaaat acggtatgat cccgatgatg cttgccggcg
     1441 gtggagaaga attttgtgcc tccaaagtct atgtcttcga cagcctctat gctgccagcc
     1501 gccgcaacga caacccaaaa ggcacgccac gcccctatga caaagaccga gacggcttag
     1561 tgatcggcga gggagcggga atgttcgtat tggaagagct ggaacacgcg ttagcacgag
     1621 gggcaaacat tatcgccgaa gtggtgggct acggtgcaaa cagtgacggt tcccacgtca
     1681 cccgcccaca agccaccaca atgcaacgct gtatggaact tgcccttaaa gatgccggta
     1741 ttcaaccgaa ccaagtcggc tatgtaaacg gacacggcac ggccaccgag cagggcgaca
     1801 ttgccgaaac tcaagccacc acagcggtgt tcggcaaaat tccgctcagc tcgcaaaaaa
     1861 gctacttagg gcatacgctc ggtgcgtgtg gtgcattgga aagctggttc agcattgaaa
     1921 tgatgcgaga cggctggttc gccccaacac tgaatttaga aaatgtcgat gaacgctgtg
     1981 gcgacttgga ttaccttcaa ggtgacggac gggaaatcca caccgattat gtgatgaaca
     2041 acaatttcgc cttcggcggt gtgaatacct cattgatttt taaacgttgg aaataaccgt
     2101 tttcaaataa tgaaaaagat attattagtt tattactccc aaaccgggca actcacccat
     2161 ttggcagaaa attttgtaca atcgcttgaa caagcgggcg tttttgtgga aaaactcgca
     2221 atcaaaccgc aacaggaata cccgtttccg tggcggttta tgcgtttttt taacaccttc
     2281 cccgaaaccg tccacctcac accgccgccg attgagcctc tgccctttca gcacgaaata
     2341 tacgatttgg tgatcatcgc ctattccgtg tggtttctct cccccagcca gccgattacc
     2401 gcttttttac agagtgaaca ggcaaaaaag tgttgaagga tacgcccgtc atcacgctga
     2461 tcggctgtcg caatatgtgg ctgatggcgc aggaaaaagt gaaaaaactg cttgccgaga
     2521 gtgaggcgaa gctcattggc aacgtggtca aagtggatca atctaacgac tgggcgagtt
     2581 ttatcaccac accgctttgg atgctgaccg gcaagaaaaa aaatcggcaa gctgccgagc
     2641 gctggcattg ccgaaagcga aatggaagat gtaaaacgct tcggggcaaa acttttgcac
     2701 atttttagcc aaaaccaacc gcttgacagc acccttttcc gccaaatgca agcggtcaaa
     2761 attgacgaaa aattgatgat gagcgaaaaa gtcggtgcga gaagtttcca cctttggggc
     2821 aaattactga tcaagtgcgg tcaaatttca ccgcacttac gccaagcggt actctatttt
     2881 tacatcctct ttttagtgac gttaatttta accgtcgtcc cgatttcaac ggtgattaaa
     2941 cggctattac gcccactgct gaaagaaaaa ttagaaaaac aaaaacggta ttttgccgag
     3001 ccttcgggcg agtaaacgta ccctacacgg aaactttatg ctatctaacg tctatatcac
     3061 caacacctcc gcctttttac ccaacgcccc tgtgtccaac gatgcaatgg aagcggtgtt
     3121 gggaatggtg ggggaaacgc cttcccgagt gcggaagatg attttgcgtt ctaacggtat
     3181 tcaacatcgt tattatgcca ttgacccgat aacccgccaa gcgactcaca gcagtaccga
     3241 gttggcggtg caagcggtca aaaaattggg aaattctgca acatcagcga cttgcttggc
     3301 ggtggggaca tcttaccccg accaaattat gccggggcag ggggtgatgg tacacggctt
     3361 gcttgatgcc gaaccgatgg aagtgctgac cactgccggt gtgtgcgtgg cgggaatggc
     3421 agcgatgaag cacgcctata atgccgtacg catcggtgag catcgtgctg cgattgcaac
     3481 ggcttccgaa accgcctccg ccattatgcg cagtgaacat ttccgtgccg aaatcgatca
     3541 taaaaaactg gacgatgctc gccctgagat cggttttgag aaagatttcc tgcgttggat
     3601 gctctcagac ggtgcagggg cggtattgct tgccaatcag ccgaacgaaa aagggttgag
     3661 cctcaaaatt cactggatcg atctggtctc ttacgctaac gaaatgccgg tttgtatgta
     3721 cgccggtgcg gaatttattg acggcaacta caccggctgg aaagcaatga gcgaagccca
     3781 acgtgccgaa tgctcggcaa tggcggtgaa acaagatgtc aaactgctca acgaaaacat
     3841 cgtcaaatac acggtggaaa aagcattgga gcggattatc ccgaaataca agctcaacgc
     3901 tgaagagatt gactacttcc tgccgcacta ctcgtccggt tccttccgag ataaattatt
     3961 ggaaggttta cagcggatca atttcctgat cccacaggaa aaatggttca ccaacctgac
     4021 taccaaaggc aacactgggt cagcctcgat ctacattatg ctcgatgaat ttatccgcac
     4081 ccacgatctc aaacagggac aaaaaatcct ctgctatgtg ccggaaagcg gacgtttttc
     4141 gtcttgtttt atgcttttgg aagcggtggt aaattcgtaa aatcgtaggg acgggggcta
     4201 ttcccgtcca acaatcatcg gaaaacgtat ggacatcaat gacattcccc aagacaacag
     4261 caaaatcttc aacggcgaac gcaaagtgat ctacgcccgc aatccgcaac cagaaatccg
     4321 ccaaatgatc tcctctattc tcgcttgcta cgcttgggac gaaaacaacc cgtttgtagc
     4381 gaagtctgat gcacggttga aggcattggc ggaagttgtt ggtaaagcag aaattggcga
     4441 ttaagtttga ttttgtgctt tacagggtcg cagattatct gtataatttg cgaccttaac
     4501 ttgcgagagc aagctgatgg tgcttagcct atctaagccc cgtctaagac tgtaggggtg
     4561 aaaacttaat aatcctacat agatggtgaa cagacagaat tctctgcttc tggacacctt
     4621 aggctcaaag aagattgcag tttgtagcaa tgcaagcggt aatatttttg ggattttttg
     4681 taaattctgc ttgaaaaggc agagtgtatc aggagctaaa accaatggca ttaaatcttc
     4741 aagacaaaca agcgattgtt gctgaagtaa acgaagctgc caaaggtgca ctttcagctg
     4801 ttgttgcgga ttctcgcggt gtaacagttg aaaaaatgac tgagttacgt aaagcagctc
     4861 gtgaagctgg tgtgacaatg caagttgtac gtaatacttt attacgtcgt gcagtggaag
     4921 gcaccgagtt cgagtgctta acagatacgt ttaccggtcc aactcttatc gcattctcaa
     4981 atgaacaccc aggtgcagca gcacgtttat tcactgaatt tgcgaaaaca aacaaagagt
     5041 ttgaacttaa aggtgcagcc tttgaaggta aaaaacaaga tgttgcattc ttagcaacct
     5101 taccaactta cgaagaagca attgcacgtt taatgggcac aatgaaagaa gctgcggcag
     5161 gcaaacttgt tcgcactctt gcagcattac gcgatcaaat ggaagcagca gcttaatttt
     5221 aagcactctt ctttattcgt ttaacaactt attttacttt aggaatcgat tgttatgtca
     5281 ttaactaacg aacaaatcat tgaagcgatt gcttctaaat cagtatcaga aatcgttgaa
     5341 ttaatcactg cgatggaaga aaaattcggt gtttcagcag cggcagcagt agcagcagct
     5401 ccagcagcag gcgcagcggc agcagaagag aaaactgagt ttgatgtagt attagcagaa
     5461 gctggtgcaa acaaagttgc tgtaatcaaa gcagtacgtg gtgcaacagg tttaggctta
     5521 aaagaagcta aagacttagt agaatcagct ccagctgcat taaaagaagg catctctaaa
     5581 gcagaagctg aagcacttaa gaaagaatta gaagaagctg gcgcgaaagt agaaatcaaa
     5641 taatttttga tttattttgt cagaacttca agttcaacaa accccgatgg aaacatcggg
     5701 gttttgtttt ttcagaattg tgtaatgtag atatgattac ctttatccat tacttgcgca
     5761 gcagtgaaaa atgtaaaaat tccacaaagt gatctgccca gtgcatttcg tggtggattt
     5821 catttgccat aatccgcagg cggatattgt ctaacggcac gccaatccga atcagtgctt
     5881 ggtagtaatt gagcgaacaa tcaatatagg tttggttcgt attagagata aagtgcgaat
     5941 cgatttcatc gccttcgtta gtgccaacct gaataaacac tttggtattg ggttgtaacg
     6001 gatattggtg cgtaaaacgc agaaaatccg gctcactaaa ccaagaggca agcgaaaaca
     6061 cccctaaatg cccgaaaata tgtgggtagc ggctgcccat ataagcggtg ataatgccac
     6121 ccattgaact gcctgccaat aaggtatgtt cttgctgagg cttggtgcga tagtgaatat
     6181 caataaaggg tttaaccgtt tccaccaccc atttggcata ttcctcccct aagcctccgg
     6241 catttcgggt ttcaggggtt gagccggtgg ttgttttcca cgggccgtat tcatttaagc
     6301 gattagctcc tgcgttatca atgccgacaa taatcatctt cggtaattct tggtgtgatt
     6361 taatggttgg aataattttc caagaatgcc ccgaataaga ctctttgctg taaaacacat
     6421 tttgcccgtc gtgcatatat aacaccggat aacgttccca accttcgttg tgataatcct
     6481 tcggcaatag tacccgaatg cggcggtgat ggtgtaaata gggaacatat aaaaaatgct
     6541 cctgcatttc taaatagtgg ttaagtggtt tttgtaccat cagtctgtcc ttttgcttaa
     6601 attgtggcgt attttacacc ttaatcagtc tgagttaaaa caagcggtca gaaaaagtca
     6661 aaaatttgca aattgctgtt acctaacgca atcggttgcc ttatgctttt gaggaatata
     6721 aaagagaaac tgtgatctaa gtcacagcaa tttttattcg gtttgactaa aatccgaact
     6781 atcacttaat agagaggaaa atgttatgca ggcttcatta caagatattc ttgaggtagt
     6841 aaaagcaaaa aatctcactt atcagcaaaa attgatgagt ttaggcaata ttgctgagcg
     6901 gttatttaac ccgattgaac tacttggcta cactgaagaa gagtgggaac acattgaaaa
     6961 tcagatgatt tgcgatttaa atgaaggtta tgcgatttat cgcccacgtt atattttgcc
     7021 tgattataat gtgtatatgc aaaaaggttg ccaattctta gatttacctc cgccaaccaa
     7081 tttagatgaa gccttagacg gcttgttaat tctgtattca cacgttccgt ccattactac
     7141 ttttccggtg tatatcgggc gtttagacca actgttagaa ccgtttataa ccgatgaaga
     7201 gcaagattac attaaaatca agcgtttctt aaatcatatc gataaaacca tttccgattc
     7261 tttctgccac gctaacatcg ggccgaatga caccaaagcc ggtcgtttaa tcttaaaagc
     7321 ggtgattgag cttgaaaaca ttacaccgaa tatgacgatt cgttatgata aaaccaaaac
     7381 atcgcgtgaa tttgccgaac tggcggcgaa agcgtgcttg ttggtgtcca aaccgtcttt
     7441 tgctaatgat gcctactaca ttcaagattt aggcgaagaa tacggaattg caagctgtta
     7501 taacgcctta ccggaatgtg gcggtgctta cactctgacc cgcctgcgtt taggtactat
     7561 cgggcgtgct tgtgcgagtg ttgaacaaat ggtcaatgag atgctgccga aagtggcaaa
     7621 actcgccctt tccacgatgg ataaacggca taaattcttg gtggaagaaa gcaatttctt
     7681 tgaaagtagc ttcttggttc aggagggctt tatcaaacgt actaacttca caagtatgat
     7741 tgcgattgta ggtcttgctg atgcggtgaa tcatttactc aagcaagaag gtttaaatga
     7801 aacctttggg caaagcaaac gtggcgatga aattgcgacg ctgattatgg ataagctcca
     7861 agcagtaaat gacgctcata aagggctgta tgttgaacga accaataacc aatatctgtt
     7921 acacgctcaa gtgggggcaa ataaccacgc tgaagacaaa atgaacacgc cggcacaccg
     7981 cattcgtgtg ggcgaagagc caaccttatt ggcacactta aaacagtctg ctcctttcca
     8041 taaatatttc ccatccggta cgggggattt attcgccttt gaccaaacct acactgatca
     8101 tttagatgcg gtggtggata ttattgacgg ctcgttcgcc caaggttatc gctacattac
     8161 cacttacctg aaaaatactg atttgattcg agtgacaggc tacttggtga aaaaaagcga
     8221 ggttgaacgt tatcgcaaag gcgaagcggt attgcgtgat accacttggt atggttcagg
     8281 caccgatgat tgtgcgaaag tgttcgaccg ccagctgcgt gatgaagaaa atgtgaatgc
     8341 agggtaacaa tggctgcact ttctgagatt tttgtgccgt tacaccgcat tatccccttc
     8401 tcgaatgtag aagggcaggg caatcgtacc agcatttttc tacaaggttg caagctgaat
     8461 tgcctgtatt gccataaccc ggaaaccatt ccacgttata gcaaggaagc aaaacaggtt
     8521 agcttgcaat acttgtacga tcaagtgatg gaggcagttc cctttattcg aggagtcact
     8581 atttcgggtg gagagccaac cattcatcat aaaaaattag tgccactgtt cgaggcgttg
     8641 cgtgagcaag ggctaacctg ttatttagac agcagcggct tttttgattt tgaggcaaca
     8701 gagccgttaa ttaatgttac cgataaattt ctgttcgatc tcaaaggaga tggggcgggc
     8761 ttacaaacgc tatgctttga tcggaaaaac caagccggca aagtgcctga acaggctctt
     8821 ccaaacgtga atcatattaa acctgaaaac ttggctcgca atttgcaaaa tttagccaaa
     8881 ttattaccgc ttgataaggt ggaagaagta cgtttggttt acctcaatga gttttataac
     8941 gcccaccatt tgctcgaaaa agtggctgac ctacttaaac cttacccaga tgtactactt
     9001 aaaattattc gggtacacac caaaggagcg agagatgaaa caggcttggc tcgttttgta
     9061 cccactatcg agcaaaccga tgaactggca gcatttgcaa aacggcacgg tattcaaaaa
     9121 gttattacta tttactaatg gagacttacg atggatatac taattagcat aattggtgtt
     9181 tttgtgttat taggcttagg tgttttatta tcaaataatc gcaaagccat taaatttcgc
     9241 acaattttgg gcgctttggc gattcaaatt ggttttgccg ctcttattct ttactttcca
     9301 gcgggaagaa atgcattgct agctactgca aattgtgtga gcaatattat taattatggt
     9361 aacgaaggta ttagctttgt gtttggcaat ttagcgaatc cgagtaatag cagcattggt
     9421 tttgtgtttg cggttaaagt attgcctatt attatcttct tctctgcgtt aatttcaatg
     9481 ctttactacc ttggtgtgat gcaatgggtg attaaaatta ttggtggagc attacaaaaa
     9541 acactaggca cttccaaggc agaatcaatg tcagcggcag ctaattattt ttgttggtca
     9601 gacagaagct cctctagttg taaaaccata cattagccgt atgacagagt cagaattatt
     9661 tgccattatg gttggtggaa ctgcttcaat tgctggttcc gttatggctg gttatgccgg
     9721 aatgggcgtt cctttaactt atcttattgc ggcctccttt atggctgcac cagctgggtt
     9781 actatttgct aaattaatgt atcctcaaac ggaaaccttg gagagtaaag cagatgacaa
     9841 tgttgaagtt gaaaagccaa ataacgtggt tgaggcccta gctaatggtg ctagtgcagg
     9901 tgttactttg gctattaatg tcggtgctat gttaatagca tttattgcag tgatcgcttt
     9961 attaaatggc tttattggtg gcattggtaa ttggtttggt tatgaggggc taaccttaca
    10021 aattttatta ggttatttat tccaaccact tgctttctta atcggtgtgc cgtggcaaga
    10081 tgccgatatt gcaggtcaaa tgataggtat gaaacttgct gttaatgaat ttgtcggata
    10141 tcttgagttt gctaaatatc tacagcctga tgctgtggtg caattaagcg ataaaactaa
    10201 ggcaataatt acttttgctt tatgtggttt tgcaaacttt agagcaattg cggtattgat
    10261 tagtggtatc ggaagtatgg caccaagtcg gcgttcagat attgctcgtt taggtttaaa
    10321 agcagtgatt ggcggcacat tggcgaactt aatgagtgca actatagcgg gtttctttat
    10381 tggtttaagt ggtgccacat taggttgata caagcggtta aattgactca cttttttgca
    10441 aaaagcccaa gtaagttaaa tgactacttg ggctttgttt aatgaactag ctcttagttt
    10501 cggtttttgc tgtgttatcc ttttccgctt tggctgtctg tgttttcgaa gttgtctgtt
    10561 tttttgcgga ttggctagca gtagctgctt ttcttacttt ctttgtttta acttctactt
    10621 ccgcattttt agagttttta tccgctaacc atgcctgcac tttagctaag aatatttgtc
    10681 ccatcgggcg aggatcgcca gaaaataatg tttgtaattt attattttca ataatgtcgc
    10741 gtctaattgc taagcgttct tcgtggtttt ccgctaaacg aatagcttga gtaacgtatt
    10801 cctctgctgt ttgggtaatt aaccaattag gtagcccgag gcgcttaaat aaaccttcat
    10861 caatatgttc atgaacttca gggcctgttt tacagacacc aactaaacca agcgtaacca
    10921 tatcgataat gccgtttgta tttccaaatg ggaatggatt tagcatcata tcgcaattat
    10981 gtagaatatt tagatattca tcatatggcg aatgtgggtg tgcggttgca tcatttccta
    11041 aatagctttt gataaaacgt tccacataag gatgcgtaat tccactagat tgccctaatg
    11101 caaaatggaa atgagttttt accttcgccc tatcacgaat ggcttttaat gcctctaaga
    11161 aatatgggtt taatttcata gtggttgatg caattccgat atggataacc tctggatttt
    11221 cacgtaggtt atagaccaca ttttgaggcg ctaatgcgga aggcacatag ggtagcgcat
    11281 cttttggaag acgtaataat tgttcactaa agcagctttc ggaaccaaca tagtcatctt
    11341 ctacgatgac atattcaata aaatcagagt gtgtagttgc cggatgacct agcgcaacag
    11401 cttgaattgg tgctaggcga gtgttactag cgaaaatagt ggttaaatcc attccaatgc
    11461 taggcatata gaatacggct ggattatttt tatcacagat atcttttaaa aagcttaagc
    11521 ggtcaaatag tgagccatct tgtggtaata aatgaaattc gtcgaatacc tgttgcccca
    11581 tttcatctac agcatcactg cctagcccaa taagatggaa atgttcgcgt gcagcaacca
    11641 ttgaggttga atgagtacga taaatagaat gtgatgaatg gaaatgctcc aataatacta
    11701 ccatgacagg tttattattt ctggtaccaa gctgttcaat ttttctatct tcccaaccga
    11761 cagaaagtaa atgacgacga attacagcat ttaacgaccg ttttacatta tgtttatttg
    11821 cttcaatatc ataactgcaa tgcatataaa catcgtgtga aatggcgctc ggtagcttgt
    11881 tcaagttttc aatttgcgct aatttttctg ggaaccattg caaaatagcc gcgcgttttg
    11941 caaaagcaga ggatgtacca ataaatctag gtgattggag tgcaaaacaa agtgatgcgg
    12001 tgagatctga tgaagcattc catgcagcat ctagattcaa taaaatatta gattccggta
    12061 agtataaaat acagaactta attagtgctt gtaatgtggc atctaaatca accgtatttg
    12121 gattagcaga ttctttattt ctattgtaag tacgcaagat atggtctgcg tttacgtatg
    12181 gagaactggc aaaaattaat gctatccagc gttgtaatgt cagaaaacgc atagcaccgt
    12241 gttcggagat ctctaatgca ggatcttcaa acaagcgagt aatcgctacc gccattcgag
    12301 tacagaaata gatagcttta tcattttcta aattttcaat ctgctctggc atattcaatt
    12361 caatattgga aatgccacca aaattactat ctaattttga aaggatagac agtagctcgg
    12421 tacaagccga ttcataatct tttttcgcga ccgcctgctc aaaacggatg acgctaggca
    12481 tattttctgc tgacataatg tatccttagt tgtttaaaat tccccacaga tcatactcat
    12541 ctgcatgtgt aatggttact gaaataattt gccctactgt cactaattgg tttgaaggat
    12601 tatctacata gactacaccg tcaatttccg gtgcatctgc cattgagcga ccgataatgc
    12661 cttcttcgtc aatgtcatca ataattactt gtacggtttt gccgattttt gcttgtaagc
    12721 gagcagcgga aatttcttgt tgtagttgca taaaacggtg gaaacgttcc tcttttactt
    12781 cttccggaac ttgatccggc atatcggtag caacagcacc ttccactggg ctgaatttaa
    12841 agcaaccaac acgatctaat tgtgcttctt ttaagaaatc gagtaatagt tggaaatctt
    12901 cttctgtttc ccctgggaag ccgacaataa aggtagaacg cagagttaat tcagggcaaa
    12961 tttcacgcca ttttttaatg cgttctaagg ttctttcgat tgaacccggg cgtttcatcg
    13021 cttttaagat tttcgggctg gcgtgttgga gtggaatatc caaatacggc aaaattttgc
    13081 cggcagccat aagcggaatt aaatcatcta cgtgtgggta tgggtaaaca tagtgcaaac
    13141 gcacccacac gcccattgag cctaattgct cacatagcgt aattaaatta cttttaatcg
    13201 gcataccgtt ccagaaaacg gttttggttg cttcttcttt tttgcgatct aacgaatagg
    13261 ctgaggtgtc ttgtgagacg attaacagct cttttacccc ggcatcaact aggcgttttg
    13321 cttcatctaa tacttgcacg atagaacggc ttgctaaatc gccacgcatt gaaggaataa
    13381 tgcagaaagt gcagcgatga tcgcagcctt cggaaatttt caaataagcg taatgcttcg
    13441 gtgttaattt aatcccttgt tttggcacta agctggtgta agggttaaat tccggttttg
    13501 gcacatattt atggacgtgg ttcattaccg cctcatagct atgtggccct gtaatttcca
    13561 atactttagg gtgtacctca cgaatttggt tttcttttgc ccctaaacag ccggtgacaa
    13621 ttacttttcc gttagcttct aacgcttcac caatgctttc aagagattct tgtactgcgg
    13681 aatcaataaa accgcaggtg tttacaatca caagatccgc attttcataa ctagggatga
    13741 tgttataacc atccgcacgc agttcggtca aaatacgttc ggaatcaact aaatttttag
    13801 ggcagcctaa gctgataaaa ccaatatttg gtgaagcact catataactc tcaataacta
    13861 aaaagaaaaa tgcctacaat ttttgtctgt aggcaaaaaa ctaacaagat tctacaaaat
    13921 cttgcccaaa atagcgataa caagcggtca atttttaata aacatttaca aacttgaaat
    13981 ttcgctaaca attaaaatta atcgatatta tttagcattg ctaatacaat cgtggaagat
    14041 ttttctgcgg ctaatggcag aaattcttca aaagaaaggt gggattcttt gtccgctaca
    14101 tccgatactg ctcttacgat tacaaatgga aggttaaaac cgtgacaaac ctgcgcaatg
    14161 gctgctgctt ccatttcgac tgcaacgaca ttcgggaaat tctgacgaat ttgattaatc
    14221 ttatcattac cgttaataaa ggcatcgccg ctacagatta agcctgaaac cacattgtaa
    14281 ccggcttttt tcgcttcctt ttgagctaat tcgactaatt gctcgtttgg cgaaaatgtt
    14341 ggcgggtttg ccggtagttg cccgatttca taaccaaagg cggtcacatc aacatcgtga
    14401 taacgaactt cggttgaaat caaaatatca cctacgttta aatctggatc taatccaccg
    14461 gcagagcctg tattaataat catatccggc tgggtgagct gtatcagtaa ggtagtgccg
    14521 atggcggcag caactttgcc gatacccgat tgtaataatg ccacacgggt attgttaatt
    14581 ttgccttcaa aaattttaca acctgctaat tcagtgactt taggttcaac cattacttgg
    14641 cgtaaaatct caatttcttg tgccatcgca ccaataatac caattttcat tactttcctt
    14701 ctctaatgta ttgtttattt tttgaaaaaa acgctatttt aacagcatta atagtgagga
    14761 gggggtgttt cttctgcttg tgaagcaact tggcttagtt gagccccttt caatttctca
    14821 gcaatatggc gaatctgagt ttgtaactta tcaattgcaa attgttgctc aataagtgct
    14881 tgatttaact cttcaataat cagctcttgg aaagcaactt tagtctccaa ttcggtaatt
//
LOCUS       DANLXB010000054        14854 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLXB010000054 DANLXB010000000
VERSION     DANLXB010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14854
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            19..2454
                     /gene="plsB"
                     /locus_tag="PXD41_001050"
     CDS             19..2454
                     /gene="plsB"
                     /locus_tag="PXD41_001050"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL6288596.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(2559..3122)
                     /locus_tag="PXD41_001051"
     CDS             complement(2559..3122)
                     /locus_tag="PXD41_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL6288597.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(3320..4216)
                     /locus_tag="PXD41_001052"
     CDS             complement(3320..4216)
                     /locus_tag="PXD41_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6288598.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            4352..4693
                     /locus_tag="PXD41_001053"
     CDS             4352..4693
                     /locus_tag="PXD41_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6288599.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            4704..5057
                     /locus_tag="PXD41_001054"
     CDS             4704..5057
                     /locus_tag="PXD41_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6288600.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            5117..5755
                     /locus_tag="PXD41_001055"
     CDS             5117..5755
                     /locus_tag="PXD41_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL6288601.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            5890..7071
                     /gene="purT"
                     /locus_tag="PXD41_001056"
     CDS             5890..7071
                     /gene="purT"
                     /locus_tag="PXD41_001056"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL6288602.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(7163..8656)
                     /locus_tag="PXD41_001057"
     CDS             complement(7163..8656)
                     /locus_tag="PXD41_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6288603.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            8857..10704
                     /gene="ilvD"
                     /locus_tag="PXD41_001058"
     CDS             8857..10704
                     /gene="ilvD"
                     /locus_tag="PXD41_001058"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL6288604.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(10838..11188)
                     /locus_tag="PXD41_001059"
     CDS             complement(10838..11188)
                     /locus_tag="PXD41_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL6288605.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(11217..11882)
                     /locus_tag="PXD41_001060"
     CDS             complement(11217..11882)
                     /locus_tag="PXD41_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL6288606.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            12088..12636
                     /gene="pgsA"
                     /locus_tag="PXD41_001061"
     CDS             12088..12636
                     /gene="pgsA"
                     /locus_tag="PXD41_001061"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL6288607.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            12714..14552
                     /gene="uvrC"
                     /locus_tag="PXD41_001062"
     CDS             12714..14552
                     /gene="uvrC"
                     /locus_tag="PXD41_001062"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL6288608.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(14557..14832)
                     /locus_tag="PXD41_001063"
     CDS             complement(14557..14832)
                     /locus_tag="PXD41_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288609.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
BASE COUNT         4374 a         2796 c         3347 g         4337 t
ORIGIN      
        1 ttctaaaagg atatttatat gtctggctta ttaaattttt atcgagcttt cctaaactta
       61 ccactttcac ttttagtaaa atctcgctct attccgactc atccggtggc tgaactggaa
      121 ctaaatcttg aacagccgat tgtctatgtt ctaccttata cctcgcaaac cgatttatta
      181 attttacaaa aaaactgctt ggctttgaat ttgcccgatc cgttgcaaga aaatgtgatt
      241 gaagggcaaa cattgcttcg ttttgtattt ttagatgaag gtcgccgttt ttttaaatct
      301 aaaggggcga aaagtgagac agagtcgatt ttttatcgtt atttagattt acatcgtgct
      361 aatgctgaat tagacgtcca attagtgccg gtttcggtat tatgggggcg ggctccgggc
      421 aaagaagatg cccgccattt acaggtgctt acctcattcc aacgtttttt atccatggtt
      481 tggtttgggc gtgataattt tgtacgtttc tcccctgcag tatcgttacg ctatatggta
      541 actgaatatg gtgcagatga aaaaatcgct caaaaaatcg cgcgtgtggc gaaaatgcac
      601 tttgcaaaat tgcgttattc agcaatgggg cctcgtttac caaatcgtga tgcgatgttt
      661 aataaaatcc tgaattcaga ggtgattcaa gctgcgattg cggaagaagc gaagaaatca
      721 tcgcctgaaa aggctcgcaa agaagccgag aaaatcatta atgaaattgc cgctgatgta
      781 aaacacgaga gtttgcgtgt agcagatcga gttctgagct ggctttggaa taagctttat
      841 caagggatca acgtgcaaaa tgcagaccgt gtgcgtaaat tggcattaga aggtcacgag
      901 atcgtttatg tgccttgcca ccgtagccat atggactatt tgctcctatc ttatctactt
      961 taccatcaag gattagtacc gccacatatt gccgctggga tcaatttaaa tttctggccg
     1021 gcaggcccga ttttccgtag ttggggagca tttttcattc gccgtacctt taaaggaaat
     1081 cgcctctatt ccaccatttt ccgtgaatat ttagcggaat tattctatcg tggttattcg
     1141 gtcgaatatt ttattgaagg cgggcgttca cgcacaggtc gtttattaga gcctaaaacc
     1201 ggtatgatgt cgatgagcct acaagcctta cagcgagggc tgaatagatc tttaagtatt
     1261 gtgcctgttt atatcggtta tgaacacgtc ttagaagtcg atacttacgc taaagagttg
     1321 agaggtgcgg caaaagagaa agaaaatgcg ggcttggtgc tacgagtgct gaaaaaactg
     1381 aaaaatttag gtcaaggata tgtgaatttc ggtgagccaa ttttggtgaa taattactta
     1441 aatcaatatt tccctgagtg gaaagagcct tccgaagatg gacgacctaa gtggttaaat
     1501 gaagccgtgg ataatatttc acatcaagta atggtgaata tcaataaagc ggcagcagtt
     1561 aatgcgaaaa acttagtggg gtcagcatta ttggcatctc gccagcgtgc attaacccgt
     1621 gaacaactca ttgaacaact tggaagttat attcagttat ttcgtaatgt accttattct
     1681 aaagatatga cattaccaac tgaaagtgca gaagtgatgt tgaatcatgt tattcattta
     1741 cctcgttcgg gcgttttaat tgaaaaagat aattttggtg aactggttcg tttagaacga
     1801 gaatctgctg tgttaatgac atattacaga aataatgtgc agcatttatt tgtgttgcct
     1861 tcacttgttg caagtatggt acttcatcat gaggctgttt cgaaagatgt tgtgattaag
     1921 tcggttaatc gtatttatcc attcttgcaa gcagagttat tcttacactt taagcaagaa
     1981 gaattaaaag cacatattga agcaattatt gcggaactaa gtcggcaggg ggtgattaaa
     2041 aacgaaagtg atatgttaat gatcaatcgc tcacatattc gtaccttgca attacattca
     2101 gctggtgtgc gtgaaatcct tcaacgttat tatattagcc taagtgtctt gttggagcag
     2161 ccaaatatta gtcgtggcta tttagaaaaa gagagtagtt caattgctca gcgtttatca
     2221 gtcttgcatg gtattaatgc gccggagttt tttgataagg cgattttctc tacctttaca
     2281 tcaagtctaa aagcacaagg gtattttgat ggtgatgata atttagcgat tgcaaaagtt
     2341 aaagaaacgg aatcgttgtt acgtagtttg atttcgattg aagttcaaca gaccattcaa
     2401 ggtgcgatgg ctaaagtcgc agaatctgta gagaatccta atatcgcagg ataataaatc
     2461 aaagaagggc gctaacaagc gctcgtttct tgcaattttg ttgccaaaaa taaaagctga
     2521 atgcgcgacc acattcagct tttttacttc ctatataatt attttggttc accgattggt
     2581 aaaacagtct taccaaaact ttcattaata atatccgcag cggctaagta gaacgctaag
     2641 aatgcggtta ataaaccgaa gttaccacca atgttagtta gggtggtgtt atgggtaaaa
     2701 tcacctgcgg ctaaaaggta gaaagtaatg gttaaactta agaaaatagc ttgtaatgca
     2761 cgggcttttg ctagtgtgcc gatgaacatc ataagtgtga atgttcccca agctactaag
     2821 taccaaccaa cgaattctgc cgatacattc gcagcaaaga acactttaaa taatgcaaaa
     2881 gaccaccaga atgcaccata gctggtaaac gcagtaaagc cgaacgtgtt acctttagca
     2941 aattcaaaca tacctgcaat catttgtgat gtgccaccga aagcaaatcc cattgctaaa
     3001 actaaaccta cgttttcacc gctgaatgta ccgttattga ttaggcttag taaaaatgta
     3061 gtaagtgcaa aaccgcataa accgagcgga gccgggttag ttcctgaatt tggagctgac
     3121 attgaaaacc tctgttatat tgttacacca taagtgtggt aattgtttat ttacgccgat
     3181 aaatcagacg ttatgtgcct aaaatttagg gcgataaagt atagcgattt tgcagtaaat
     3241 tgactagaaa tttccgagac aagcggtgag atttttgcaa aattttgcca aaaaatgacc
     3301 gcttgttgtt gtcatttagc tatggattta actgccgata ttggctgggt gttacgcaat
     3361 attgcttttt aaaggcggta ataaaatgcg actcggattg gaagccgcaa gataaggcga
     3421 tacttaatac cgacccagct tggcttttga gcagcattgc tgctttttgt agcctaattt
     3481 tgtgtacaaa agcatgtggg ctaatacata aatgtttgtt aaataagcgg actaactggg
     3541 cacgagaaag gtggataaat gccgccatat catcgacttg ccattcgtgt tcgggattaa
     3601 gcaaaatagc tttgatcaaa ggtcttaagt gtaagtcttg ccaacctttt aaaataccga
     3661 ataactgatt gttatggtta actagatgtt ctcgtaagat catagttaaa ataacaacag
     3721 caagcgagtt aaccacagat tttacggcta aattaggtgt ttctgcttct tgttttagaa
     3781 tatctaacat tgcttttaat ggtgtctcgg caacttgaaa tacgatcatt tcaggtaagc
     3841 tttccattaa ttcggcttga tggtcataat aaaaatggag gcagaacata tcgcattctg
     3901 attgagaaag tcctgcttgg gtgagtgtaa atgcacccaa ttgttcaggg tttaccgcat
     3961 ttttgctggt caaaggctgt atttgactac gtaatgtatg atcggcaaat ctggggaaaa
     4021 atacaatatc tccctgttta aggtgatggg ttttcccatt atgttgtaga taagcttgcc
     4081 catagctgat gatatgagcg attgcttgtc cggtttgatg cggattctca agttgccaat
     4141 ctccctgtaa ctgacatttc acactgattc cggctgagat ttgagcgaaa gctagaagcc
     4201 tatctaatat atccattgtt cattccttat atttccacct taaattgcga ttatttcatt
     4261 ataatatgag ctgatttgat aataaagttt atcagataaa cgcaataata aatgcgtttt
     4321 ttcatattat tcactttagg aggaaatcaa tatgtcttca ttccaaaatt ggacagaaca
     4381 cacagctcac gttaagcaat cttttggtaa attagggcaa aaacacccta aaatgcttga
     4441 agcttataaa gcattaggta cagcggccgc agcggaagca ttagatcaca aaactcgtga
     4501 attaattgca ttagcagtag cgattacaac acgttgtgaa agttgcatca gtgtacacgc
     4561 agaagaagcg gcaaaagcag gtgcaaccga aagcgaaatt gccggtgcat tagcgactgc
     4621 gattgcatta aatgccggtg cggcatatac ctatgcttta cgtgcattag aagcggtgga
     4681 agagcaaaaa taaggagcaa taaatgaaga aattggcttg gattttaggc tttgcagcta
     4741 tgatgccaat gatgtctagt gctaaacaag catcagttca gcaagtgcag gctgaaaaag
     4801 cagcgggcat ttggattgat gtacgttctg ctgaagaatt tcagcaaggg catttaaatg
     4861 gtgcaattaa tgtaacgcat actgaaattg cacaacgtat cgcagaagtt gctccagata
     4921 aaaatcagcc gattcatctt tattgccgct cgggtcatcg agctgaagcg gcgcttaatg
     4981 agctaaaaaa attaggttac agcaatgtaa ctaatcatgg tggttatgac gatctgatta
     5041 aagccgggtt gaaataactg ttttgagtgc caagcatttg cttggcactt ttcgtttata
     5101 tctgaggtta aaaattatga gtgcttttaa caattttgtt aattttgttg caaatattgt
     5161 tgctccaatg caacgccaat tcattaactt tgtacgtatt gccatttgta tcgtgatggt
     5221 ttggattggt ggtttaaaag tctgccaata tgaagcagac ggtattgccc attttgtgtc
     5281 taatagcccg ttctttagtt atatgtacaa aaaaggcccg aatttagttg atgacggcac
     5341 aggtaaaatg gtgatggaat atacccttca caaaaaccct gaaggtaaaa tggtggcaaa
     5401 aaacatcgaa tggcataaag aaaacggcac ttatactgca tcttatatca tcggtgcaac
     5461 cattgtgacg gttggtttat tgacgttatc cggtatttgg ttcccggttt ccggtatggc
     5521 ggggggctta ctcacctttg gtatgtcgat tgttacactc tcttttatga tcaccacccc
     5581 tgaaatttgg gtgccgaatt taggtgggga tatgccaacc ccagcgcatg gtttcccata
     5641 tctgtcagca gtcggtcgtt taattgtgaa agatgtgatt atgatggcag gcggcttggt
     5701 tgccgcagcg gaatgtgcaa atcgcatttt agccagacgt aaagcgattg cttaattgat
     5761 agtggtaatg caagcggtca ttttcttgta aaattttgca ataaaatgac cgcttgtttt
     5821 ttgtcaattt gccataattt caagtataat tcaattacgt aatcgtttgc ttttatggag
     5881 aggaataaaa tgacaacaat cggtacaccg ttaagaacga acgctacaaa agtgatgatg
     5941 ttaggttcgg gcgagttggg gaaagaagtg gtaatagagc tgcaacgctt aggcgtagaa
     6001 gtgattgcgg tggatcgtta tgacaatgca cctgcacagc aagtggctca ccgtgcttat
     6061 acgatttcga tgttagacgg gaatgcattg cgagatttgg tggagaaaga aaaaccggat
     6121 tttattgtgc ccgaagtaga agccatcgca actgcaacct tggttgagtt agagcaagag
     6181 ggatataacg taatcccaac ggcaaaagca acgcaattaa caatgaatcg agaaggcatt
     6241 cgccgattgg cggcagaaga gttgggctta aaaacgtcgc cttatcgttt tgtggataat
     6301 tttgaacagt tccagcaagc gattcaagaa atcggcattc cgtgtgtggt caaaccgatt
     6361 atgtcttctt ccggacacgg gcaatcagta attaaatctg aagcggatat tcaacaggct
     6421 tgggattatt cgcaacaggg cggacgtgcc ggcggtgggc gtgtgattgt agagggtttt
     6481 atcaaattcg attatgaaat tacccagctt accgttcgcc atattcacgg cacgtcgttt
     6541 ttagctccca tcgggcatat tcaggttgat ggcgattatc gtgaatcttg gcaaccgcag
     6601 caaatgtcgg acattgcatt gaaaaaagct caagaaaccg cagaaaaaat tacctctgca
     6661 ctgggcggaa gagggatttt cggcgtggaa ctttttgtct gtggcgatga gattattttt
     6721 aacgaagtct ccccacgtcc acacgatacc ggaatagtaa caatggcatc acaagagctt
     6781 tctcaatttg ctctgcacgc ccgtgcgatt ttgggcttac cgattccgga aatttaccgc
     6841 atcagcccgg cagcttctaa agcgattgtg gttgaaggga aatcggataa tgtgcgtttt
     6901 ggcggtgtag ataaggtatt agccgaaatc gggacgaata tccgcttatt cggtaaaggc
     6961 gaagtaaacg gacaccgccg attaggggta attcttgctc gtgatgaaaa tacagtgaga
     7021 gcattagaaa aagctcggcg agcttatgat aagttagata ttcaattata aagtcaggat
     7081 tttgatattc gttgatagta ggcattttat gcctactatc ctataggcct ctaatcaaat
     7141 tggatgaaaa agttgaagat tgttaatcct ctttgccgag aatttggttc acttcgctct
     7201 tatacaatac tgcttttgct ccaaatacgg cttgtacacc gccaccgact tccagcacgt
     7261 caatcgcacc gagttttttc agtgttgctt tatccacggc tttcacctct ttcactgcca
     7321 cacgcagacg ggtaatacaa gcatccacat tttcgatatt atttgcagag ccaagagcgg
     7381 cgataatttt atgggcattt tcagtcagtg agctggtttg ttgttcgact acctcttcac
     7441 tctcttccgc acgtcccggt gtcattacgt tgaatttttt gatcaggaat aggaacgaga
     7501 agtagtaaag tgccgcccac ggcaagccga ctatgatcac tcgaagccag ttagtgttct
     7561 cgttgccttg caaaatgcca aacagggtga agtcgatcac gccaccggag aaggtgttac
     7621 caatcgagat gttgagtaag tctgcaatgt agaacgacac gccgtctaaa aaagcgtgga
     7681 acacatagag ccacggggca acaaacagga acataaattc aatcggctcg gtaatgccgg
     7741 tgataaaaga ggtgagcgct gcacctaaga acagaccgct aatcgcacca cggcgggctt
     7801 tcggcacagc gtgatacatc gctaaacagg cggcaggtaa gccaaacatc atcgtatcga
     7861 aacgtccagc gaagaaacgt gtaccttcgg taaataagcc ttgatgggtt ggatcggcga
     7921 gttgggcgaa gaagattttt tgcgccccga taatggtttc accatttacc acttctgttc
     7981 cgcccaattc ggtgtaccaa aacagcgggt agatcatatg gtgtaagccg accgcaccgc
     8041 ttaaccgcat taagaaaccg tagaaaaagg tgccgatttc gcccatttcc gcaatccctt
     8101 gccctgctga aaccaaccac tgttggaaag ccggccagat caaaaagaac actgccccga
     8161 caaaaatcgc agcaaaggcg gtcacaatcg gcacaaaccg agagccgcca aagaagccga
     8221 gaatttgcgg cagctgaatg ttgtggtatt tgttatgcag tttcaccgta atcaagccca
     8281 ttaccagcga gccgatcaca ccggtatcaa tccctttggt ttcaggagga aacagcggaa
     8341 tgagggcaga aatcgtgcct gtcataatca aataaccgac cactgctgcc agtgccgcta
     8401 cgcctttatc tcgttttgct aatccaatgc ctaaaccgat acacagtaat aatgcaaggt
     8461 tgccaaacac cacactgcct gccgatgcca taatctggaa aatgccctgt aaagtcgggt
     8521 tatccagtat cgggtaggct tgcaccgttg ccttattcga caaagctccg ccaatcccta
     8581 acagcaaacc ggctgccggt aaaatcgcaa tcggcagcat aaaagctttt ccgacttgtt
     8641 gcagttgttt gaacataaaa tttctccttt tttatggttg tatttgatgg tttatagcat
     8701 actgaaattt agccgtatga ggtgtgatat aactcacaga tttgcaaaat ttttagcaaa
     8761 ttcgaccgct tgtaaaaaaa ttaccgcttg cggaaaaatt gaagtagaat taagcatttt
     8821 tttagcaaac acaacataaa aaatttggag aagattatgc ctattttacg ttcagcaact
     8881 tccactcagg gtcgtaatat ggcgggggct cgtgcattat ggcgtgcaac cggtatgaaa
     8941 gaaaatgatt ttggtaagcc gattattgca gtggtgaact cattcaccca atttgtgccg
     9001 gggcacgtcc acttaaaaga tatggggcag ttggttgcgg cagaaattga aaaagccggt
     9061 ggggtggcaa aagaattcaa caccattgcg gttgatgacg gcattgcaat gggacacggc
     9121 ggaatgcttt attctttacc aagccgtgat ttaattgcag acagtgtgga atatatggtg
     9181 aatgctcact gtgctgatgc gatggtgtgt atctctaact gcgataaaat caccccggga
     9241 atgttaatgg cagcaatgcg gttaaatatt ccgactattt ttgtctctgg tggcccgatg
     9301 gaagccggaa aaactaaact ttccgatcaa ttaattcgct tggatttagt cgatgcaatg
     9361 atcgaaagtg ccgacccgaa tgtgtctgat gaacgtattg atgcgattga acgtagtgct
     9421 tgcccgactt gtggttcttg ttcaggtatg ttcaccgcaa actcaatgaa ctgtttaact
     9481 gaagctttag gcttaagttt accgggcaat ggttcaatgt tggcaactca tgctgaccgt
     9541 aaagagcttt tcctaagagc aggtcgtgaa attgtggaac tttgccgtaa atattaccaa
     9601 caagacgatg agagcgtgtt acctcgctca atcgctacct tcgatgcatt tgaaaatgca
     9661 atgagccttg atattgcaat gggtggttca agtaataccg tgcttcattt actagcgact
     9721 gctcaagaag ccggcgttga ttttaaaatg gaagatattg accgcctctc tcgtgtcgtg
     9781 ccgtgcttaa gtaaaattgc cccgaatacc aataaatacc atatggaaga cgtacaccgt
     9841 gccggtggga ttatgggctt gctgggcgaa ttagatcgtg caggtttaat ccatcgccac
     9901 gttaaaacag tgctaggttt aacgatagaa gagcaactga atcaatacga tattattcgt
     9961 aataaagatg aagatttaca caaattcttc cgtgcaggtc cggcaggaat tcgtactact
    10021 aaggctttct cgcaagattg ccgttgggac actgttgatg atgaccgtgt aaacggctgt
    10081 attcgcaatg tggaaaatgc tgtgaccaaa gagggcgggt tagcggtatt atttgggaat
    10141 attgcagaag atggatgtat tgttaaaacc gcaggggtag atgagtctat ttggaaattc
    10201 actggcaccg caatcgtgtt tgaaagccaa gaagatgcgg tagcaggtat tttaggcgga
    10261 aaagtgaaag aagggcatat tgtgattatc cgctatgaag gtccgaaagg cggcccgggt
    10321 atgcaagaaa tgctttatcc aactagttat ttgaaatcaa tgggcttagg caaaaaatgt
    10381 gctttattaa ctgacggtcg tttctctggc ggtacctcag ggttatctat cggacacgct
    10441 tcaccggaag ccgcttcagg aggagcgatt gccttaatta atgatggcga tacggtggcg
    10501 attgatattc cgaatcgttc gattaactta atggtttcag atgaagaact tgctgctcgc
    10561 cgtgcagaaa tggaagcccg tggcgataaa gcgtggcagc cgctaaaacg tgagcgagaa
    10621 gtgtcgtttg cactaaaagt gtttggacat tttgccacct ctgctgataa aggtgcggtg
    10681 agggataaat cgctgttaaa gtaaataaat tagaaaaaag aagcatttca ataatatatt
    10741 gatctgctct ttattcagct gaatatttaa tctagctgaa tggagagcag atcgatagcc
    10801 taatttacat ctttttgttt tgatacaggg aaatgtatta caagcatttt gccggttttg
    10861 gcagacctgc aattttagtg gcttgttttg caggaccatc aggaaacaag cgttgtaaat
    10921 aacggctgtt gcctttttct tcaccgaatt tttgtgccat tgtctttacc agcattcgaa
    10981 ttgctggtga agttttgtat tcttggtaga aatcccgcac cagataaata atttcccaat
    11041 gttctgcggt taagctaatt tgctcttttt cggcgatttt ttctgctaat tctacagacc
    11101 aatcatttaa attagttaaa tagcctgaag catcggttgg gtattggata ttatttaatt
    11161 caatcgtcat caaataaaaa tgccacataa tgtggcattc ctcttaaact aaaacgctag
    11221 tcgtcactac ctagcacacc gaagatttgt aagaagctta caaataggtt gtagatagac
    11281 acatataaat caacggttgc acgaatgtag ttggtttcgc caccgtgaat aatgttgctg
    11341 gttgccagta aaatcgcacc gcttgagaaa atgacaaaca agctgcttag ggctaaactt
    11401 aatgccggaa ttgctaagaa gatattggca ataataccga ctaataatac cacaaacagg
    11461 gcaaccatca ttccgctgat aaagctcata tcttttttgg tggttaatac ataagctgaa
    11521 caagcgaaga aaaccaatgc ggttgcaccg aatgcaaggg cgacaatatc ccctaaaccc
    11581 gcaccgatgt aacggtttaa aataggacct aaggtatagc ctaagaagcc ggttaaagca
    11641 aatacgctta agatacccgc actgctgttt gaggtggcat tcgtcaagaa aagtaagccg
    11701 taaaagccga ccaataatcc ccaccacggc atagccggtg cgttcatttg aattgcaaca
    11761 aaagcaacaa ctgcggagaa agtcagggtc attgccaata acatataggt attgcgaagc
    11821 actttgtggg tgctaattag agattcacca gttgaatagc tgtgagctaa acgattttcc
    11881 ataaaaattc cttctgtttt tgtgtttaaa tcggaacatc cgatggatta atatctatgg
    11941 ataaatttcc ataaatcaag aagtaaggta gccgtaattt attgtaaagt caatgcgatt
    12001 ttgtaacaga agagtaaaaa aaaacattta gttgtgttac acttaatacc actctacttt
    12061 atattccttt tcatcgatga attcgctatg aagctcaatt tcccaactta tttaacctta
    12121 tttcgggtag gattaacccc actttttatt gtggcttttt atctgccgac aaaatatgcg
    12181 cctgaaattt caacacttat tttttttatt gcatcgatta ccgatgcctt tgacggctat
    12241 ttagcacgca aatggaatca aaccacccga cttggtgcat ttttagatcc tgttgcggat
    12301 aaagtcttgg tagctgttgc gtttgtctgc gtggcggagt attaccatac ttggtggatt
    12361 actattccaa tctgcattat gattgcccgt gaaattatta tttcggcttt gcgtgaatgg
    12421 atggcggagc ttggggaaag ggccagtgtt gccgtttcga tttgggggaa agtaaaaacg
    12481 actgctcaaa tgctcgcatt aggtggaatg ttatggagac agaaccaact aatggagatt
    12541 ttagccttta ttctgcttta tattgcagtg ggtttaacga tctggtctat gatgcagtat
    12601 ttaaatgctt caaagaatag tctattgaag tcataagcgg tcatattttt attctttttt
    12661 gcaatttgta gagtggaaat atcgctctac aattttcaat tttatcaact ctaatgtctg
    12721 aatttaacgc taaatccttc ctgttaaatg tgcctcacca accgggtgtt tatcgtatgt
    12781 atgatagtaa aggcacgata atctatgtgg gtaaagccaa agatttaaaa aagcgtttag
    12841 ccagctattt tcgtagccaa ctttccagta aaaaaacgga agccttggtg gcaaatcttg
    12901 ctaatattga aacgacgatc actcattctg aaacagaggc gttactcctt gaacataatt
    12961 atattaagga aaatcagccg aaatataatg tgttgctcag agatgacaaa tcttatcctt
    13021 atattctgtt aactaaacat aagcatcctc gtttaacagc atttcgtggt agtaaaaaga
    13081 tcgccggtga atattttggg ccttatccga atgttacggc agttcgggaa acactgaatt
    13141 tattgcaaaa aatttttcct attcgtcagt gtgaagatac ttattataaa aaccgttcac
    13201 gaccttgctt acagtatcag atcggacgct gtttagcccc ttgtgtagag ggctgttatt
    13261 cacccgttga atacgatcag caggttaatt tggttcgttt gtttttacag ggaaaagatc
    13321 accaagtagt cgagcatctg gtacagaaaa tggaagatgc ggcggaggct ttggattttg
    13381 aaggtgcggc acgttttcgg gatcaaattc aatcagtaag agcggtgcaa gaaaaacaat
    13441 tcgtctctaa tgataggcta gatgatcttg atattatctc gatcgtttat caaaatggga
    13501 ttgcctgtgt gcatatctta tttgttaggc aaggtaaggt actaggcaat cgttcttact
    13561 ttccaaaagt gccaagtaat acagatttaa ccgagctcgc agataccttt gtcggtcagt
    13621 tttatttaca aatgaaccag caccgcacca tacctaacca aattgtaatt gatcatcaat
    13681 taagtgaatc taaggcactc agtgaaattt taagtgagca agcagggcat aaagtcagca
    13741 ttttagataa tgccatcaga ggtgataaac agcgttattt agctttagcg agaactaatg
    13801 caatggcagc attagtttta caacttaagc aagaatccca tattcaaagc cgttatcagg
    13861 cattgaaaga aatgttgaaa atgtcagaga ttaaaagaat ggagtgcttt gacatcagtc
    13921 atacaatggg caaccaaaca gtggcttctt gcgtggtgtt tgatgaaaat gggccgctaa
    13981 aatcggatta ccgccgtttt aacattgagg ggattaccgg aggtgatgat tatgcagcaa
    14041 tggagcaggc tctcttgaaa cgctataatc gagaattacc gccagaaaag atccctgata
    14101 ttatttttat tgatggtggc aaagggcagt tgaaccgagc gttagatgtc ttcgctaaac
    14161 ttgatgtgga atgggataaa tcgaaaccgc ttttaattgg tgtggcaaaa ggcgtagaac
    14221 gtaaagctgg gctggaaact ttaattatca gcaaatggga taaagaaatt cacttaccgc
    14281 cagatagtct tgccttgcat ttaattcagc atattcgaga tgaatcccac cagcatgcca
    14341 ttagtgggca tcgtaaaaaa cgccaaaagg cctttaccga aagtggatta gaatctattg
    14401 ccggtgtcgg tgcaaaacgc cgacaagcgt tgctaaaata tttaggcgga atgcaggggg
    14461 tgaagtctgc aaccttggaa gagattcaat cagttccggg aatttctaaa gcgttggcag
    14521 aggttatttt tgatacatta aaaaatagtt aaattatcaa tagcgatatc gcttccagcc
    14581 gtaatggtag cccactccta tgcttgggta aattataggg tgaattggca gatttatgct
    14641 ttctgagcgt ttatcgcttt ggtttaatgg ctcatcatgt tgctttgtat ttttatcaac
    14701 agtttgctta ttgattactc gttgatggta atcctgaact gcttgcatat ccattggtac
    14761 tgtgctttgt tgttggggtg tcgaacaggc ggttagtgca acgctcaatc cgagtaaaat
    14821 taattttttc atatcatttc cttatattgc aaaa
//
LOCUS       DANLXB010000055        14539 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLXB010000055 DANLXB010000000
VERSION     DANLXB010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14539
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(18..506)
                     /gene="sixA"
                     /locus_tag="PXD41_001064"
     CDS             complement(18..506)
                     /gene="sixA"
                     /locus_tag="PXD41_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL6288610.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
     gene            633..2072
                     /gene="pyk"
                     /locus_tag="PXD41_001065"
     CDS             633..2072
                     /gene="pyk"
                     /locus_tag="PXD41_001065"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL6288611.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            2168..3205
                     /locus_tag="PXD41_001066"
     CDS             2168..3205
                     /locus_tag="PXD41_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6288612.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            3245..4303
                     /locus_tag="PXD41_001067"
     CDS             3245..4303
                     /locus_tag="PXD41_001067"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL6288613.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            4358..5479
                     /gene="tyrA"
                     /locus_tag="PXD41_001068"
     CDS             4358..5479
                     /gene="tyrA"
                     /locus_tag="PXD41_001068"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL6288614.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(5670..6755)
                     /gene="recF"
                     /locus_tag="PXD41_001069"
     CDS             complement(5670..6755)
                     /gene="recF"
                     /locus_tag="PXD41_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL6288615.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            6895..7224
                     /locus_tag="PXD41_001070"
     CDS             6895..7224
                     /locus_tag="PXD41_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL6288616.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            7232..7837
                     /gene="recR"
                     /locus_tag="PXD41_001071"
     CDS             7232..7837
                     /gene="recR"
                     /locus_tag="PXD41_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL6288617.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            7909..8235
                     /gene="grxD"
                     /locus_tag="PXD41_001072"
     CDS             7909..8235
                     /gene="grxD"
                     /locus_tag="PXD41_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL6288618.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            8377..9414
                     /locus_tag="PXD41_001073"
     CDS             8377..9414
                     /locus_tag="PXD41_001073"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL6288619.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            9441..9989
                     /locus_tag="PXD41_001074"
     CDS             9441..9989
                     /locus_tag="PXD41_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL6288620.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            9998..10342
                     /locus_tag="PXD41_001075"
     CDS             9998..10342
                     /locus_tag="PXD41_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6288621.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(10375..12153)
                     /locus_tag="PXD41_001076"
     CDS             complement(10375..12153)
                     /locus_tag="PXD41_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL6288622.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(12379..12948)
                     /locus_tag="PXD41_001077"
     CDS             complement(12379..12948)
                     /locus_tag="PXD41_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL6288623.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            complement(12958..>14539)
                     /locus_tag="PXD41_001078"
     CDS             complement(12958..>14539)
                     /locus_tag="PXD41_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL6288624.1"
                     /translation="EIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKVPFK
                     EIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENFAKT
                     DNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIVIGN
                     KQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVFILL
                     ACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLSGAL
                     LYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFVMLA
                     LPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIAAKP
                     WADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACKEFE
                     KYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEMSQS
                     RVTGFLDAEQFLAWLNKL"
BASE COUNT         4362 a         2821 c         3161 g         4195 t
ORIGIN      
        1 ttctaaaaat gaaagaatta agtatgcttt actcgaatta gctcagcttt tgtctttacc
       61 caattaattt ctgctatggt tgaagttgga aattgtacat tgctttggtt attcgttaaa
      121 atttggacga gatcgaacac aagtgggaga tgtgaaatca gaagaatatt ttttgcgcct
      181 tcctctctta aaaaatgtag atagctttct actgtatgcg ggtttccgtc aggcgtaacc
      241 tcgtcccaac tttcaatgag gttggtaaaa tgttggggaa aattgaccgc ttgcatacca
      301 ataagcacat tttcaagcgt ttgttgcgcc ctaaggtatg ggctgacgag aattttatct
      361 aattgaattt gttggttggc taaatgttct cctaaccatt ttccctgtga aatggtgttt
      421 tttataccat tgtcggttaa acagcgagca gcatcactcg aagcattaaa gcctgcttcc
      481 ccatggcgca taatccaaat attcataaca ttctccttta gttgtattta aactctcttg
      541 atttaggcgt ataatgaccc tcgtttaacg cataatcaag atgcttagaa agattttaac
      601 ttaattttta aatttattga tggagtcaaa taatgtctag aaaactcaga agaacgaaga
      661 tcgtttgtac aatgggacct gcaacagatc gtggcaatac gttggaaaaa atcattgctg
      721 ccggtgcaaa tatggttcgt atgaatttct ctcacggtat tcctgaagat cacatcgaac
      781 gtgcgaataa agtgcgtgaa attgctgcaa gattaggtcg ccacgttgcg attttaggcg
      841 atttgcaagg tcctaaaatt cgtgtttcga catttaaaga cggtaaaatt ttcttaaata
      901 ttggtgataa attcacctta gacgcagatt taccgcgtgg agaaggccat caagaagctg
      961 taggtttaga ttacaaaaac ttaccaaatg atgtagtacc tggtgatatt ctattgttag
     1021 atgacggtaa tgttcaactg aaagtgttgg aagtggaagg cgttaaagtt catactgaag
     1081 tgacagttgg tggcccgtta tcaaacaata aagggattaa caaattaggt ggtggtttat
     1141 cagctcctgc attaaccgac aaagataaag aagacattaa attagcggcg aaaatcggtg
     1201 tggattacct agcggtttca ttccctcaat caagtgcaga tttacattat gcacgtgaat
     1261 tagcaaaaga agcaggctta gaagcgaaaa ttgtagcgaa ggttgaacgt gccgaaactg
     1321 ttgcgactga agaagcaatg gacgacatca ttttaggtgc ggacgttgtg atggttgctc
     1381 gtggtgactt aggggttgaa attggtgatg cggctttagt gggtgtgcaa aaacgtttaa
     1441 tccgccgtgc tcgtaagcta aatcgtgtgg taattaccgc aacccaaatg atggaatcga
     1501 tgattaaaaa accaatgccg acccgtgctg aagtgatgga tgttgcaaat gctgtgttag
     1561 atggtactga tgcggtaatg ctttccggcg aaactgcaaa cggtgactac cctgttgaaa
     1621 cggtaaaatc aatggcagaa gtgtgcttag gtgctgaaac aatgccaagc attaacattt
     1681 ctcgccaccg tatggaaggt acgtttaaat ctatcgaaga agctgtggca atgtctgcaa
     1741 tgtacaccgc aaaccattta gaaggtgtat cggcaattat ttcattaact cattcaggcg
     1801 aaacggctaa attaaccagc cgtatcagct caggtttacc gatttatgcg atgtctcgta
     1861 accaaaaagc attaaacctt tgtgcgttat atcgtggtgt aacaccggta tattacaatg
     1921 aagacagccg cacaatggaa ggggcgaaaa aagccattgc tcaattaaaa gaacaaggct
     1981 atttattaac cggcgaatta gtgcttttaa ctcacggaga tgaattaaaa gctggcggta
     2041 caaatacttg tcgtatctta agagttgaat aatctaaacg attaacgcaa aagccacata
     2101 aaacacttta tgtggctttt tttctgtctt aatatagctt aatgtaatct gaactattga
     2161 tattattatg cacaataaac ttctttctat ctgtattctc cgcctttctg ccattggcga
     2221 cgtttgccat accttagcgg ttattcaagc tattcaacga aaatatccta gtgctgaaat
     2281 tacttggatt atcggcaaaa cggaagcgta tttaatgaaa gatattccga atgttcactt
     2341 aattccttat gataaaaaaa tagggtggaa aggtatcttt acactttggc aaaaactttc
     2401 tcacaagcgg tttgattttt tattaaattt acaaacggca ttccgagctt caattctatc
     2461 gcttgggatt aaagcaaaga aaaaaatcgg ctttaatcaa gacagagcaa gggaaatgca
     2521 atggttgttt accaaccaga aagtagaaat gacagactct cctcacgtgc ttgacgggca
     2581 aatgatgttt gccaaagcca ttgggataat ggatttatcg gcacaatgga atttacctgt
     2641 gagtgatgaa gatttagctt atggcaaaca atttattgat tttacaagga aaaatatact
     2701 cattgctcct tgttcaagca agaaagagaa agattggttg ccggaacgct atgcagaaat
     2761 tgctaactgg ctaagtaagc aaaatatcaa tgtattaatt gcaggttctc catcgcaata
     2821 tgaaatggaa accgcagcca aaattcaaca acttgccccg aattgtacga gtattgccgg
     2881 taaaaccacg ctaaaacagc ttgcaggtgt tattcgtcag gttgatttgg tgatctcttc
     2941 agattcaggt cctgcccata tcgccactac gcaaaatacg ccggtgattg ggttgtatgc
     3001 gattcataat ccaagacgga caggccctta caatgactta gacaaagtgg tttcggtata
     3061 tgatgaagcg attttgcaat cttatggtaa accttggcag caattagctt gggcaactaa
     3121 agctaaaggc aaaaattgga tggaaaaaat cacggtggag agtgtgaaac aaaaagtagt
     3181 tgaaacttta aaaattacgt tgtaaagttt gtgtattaaa agatttacac aaaaggaaat
     3241 taaaatgaac acagtgttta atcaagatag cgtgcataac gtaaatatcc aagatgaaaa
     3301 ggtattactg accccacaag agttaaaaca agaatttccg ttgccggaac atttacgcaa
     3361 tcaaattgaa cgttcacgca aaacgatttc cgatattatt cacagacgag ataaacgcca
     3421 actgattgtg attggacctt gttcgattca cgacccagtt gctgcccttg aatatggtaa
     3481 aaaattaaaa gctctttcgg agcaagtgag tgataagttg tatattgtga tgcgggttta
     3541 ttttgaaaag ccccgcacta ctgtaggttg gaaagggctg attaacgatc cgaaaatgga
     3601 cggctctttt gatgtcgaaa ccggcttacg tatcgcacga aaactctgtt tggatttagc
     3661 cgaacttggc ttgccgttag cgaccgaagc cttagatccg atgacaccac aatatttagc
     3721 ggatttgttc agctggtcgg caattggagc aagaacaact gagtctcaaa ctcaccgtga
     3781 attagcctca ggtttgtcaa tggcggtagg ctttaaaaat ggtacagatg gtgatttagc
     3841 cgttgcactt aatgcgatgc aatcttccgc tcaaagccat agctttatcg gcattaacca
     3901 acaggggcaa gttactttac tcaaaacaaa aggtaatgca gacggacata ttattttacg
     3961 tggcggtaaa accccaaatt atgaaaagca atatgttgat gattgtgaat gggtgctaaa
     4021 acaagcaaac ttacctacag cgattatgat tgattgcagc cacggcaatt ccaataaaga
     4081 ttaccgccgc caaccgctgg tggcagaaaa tgtattagag cagctacttg ctggcaatac
     4141 ttcgattatc ggtttaatga ttgaaagcaa tttacacgca ggtaatcaat catcagaatt
     4201 gccgttcgag cagatgaaat acggtgtttc tattacggat gcttgtattg actggcaaac
     4261 tacagaagag cttttaactc actttgctga aaagttgcgt taaagataat ttgcaaaaaa
     4321 ttgcataaaa acgaccgctt gtaaattggt aacaaatatg aacccattag ccccattacg
     4381 agaacaaatt gatcaagttg atcaacaact tatcgcctta ctttctgaac gcttagctct
     4441 tgtggcagaa gttgggaaag tcaaatcaga acacggcatt cctgtttatg ctccggagcg
     4501 agaaaccgca atgatttccg cccgccgctc tgaagcggaa aaacaaggta ttccggcgga
     4561 tctcattgaa gatgtgctac gccgtataat gcgtgaatct tatgccaatg aaaacaaaca
     4621 cggcttcaaa agagttaatt cggacattca aaaaatcgtg attgttggtg gtaaagggaa
     4681 attaggtggg ctgtttggca attatttaac cctatccggc tataatgttg aggcattagg
     4741 acgtgatgat tgggacaatg ccgagcagat tttagccaat gcagatgtgg ttattgtgtg
     4801 tgtgccgatt gccaacaccc tagcaaccat cgagcgttta caatcttatt taaccgaaaa
     4861 tatgattttg gcggatttaa cctccgtcaa acatcagccg ttgcaaaaaa tgctggaagt
     4921 gcataatgga gcggtagtcg gtttacaccc gatgttcgga ccggatattg caagtcaggc
     4981 aaagcaagtg gtcgcttgct gccacgggcg tttccctgaa cgttatcaat ggttgcttga
     5041 gcaaatcaaa atttgggggg caaaaattga agagattgag gcagcagcac acgataatgc
     5101 aatgacctac attcaagccc tacgccactt ttccactttt gcattcgggc tacatctttc
     5161 tcgccagccg gtgcaactct ctcaattatt ggcactatct tcgccgattt accgcttaga
     5221 gttggcaatg attgggcgtt tatttgccca agacggcagc ttatatgccg atattattgc
     5281 cgataaaccg gaaaatttag ccaccatcga aaccttaaaa gagagttttg aacaagggct
     5341 agatttcttt aaacgcaacg acaaagccgg ttttatcaag gcttttgagg aagtgcatca
     5401 ctggtttggc gattattccg agcagttctt gaaagagagt agagtattgc tccaacaggc
     5461 tcacgattca agaaagtaaa ggtaggttga ggttttgctc tgatagcact agcgtccacg
     5521 ctagtgctat ttaatattct acaagcggtt aataaagagc tgttttttgc aaatttttat
     5581 gcaaaattat ccgcttgttt tggcacgagc gtggacgctc gcgccatcgg aagaaacatt
     5641 tttgtaaaat tgcccccaaa tctgaccgct tactgtggct gaatttctcc attttttacc
     5701 gtaaacaaac aatcatcgct tctgtcttgc cattgcattt gattgagctg atcttgagta
     5761 atggcggtaa cgaatacttg tgagccactt tctcttaaac gatgtgctaa aagctcacgt
     5821 ttggttgggt cgagttcgga ggcaaaatcg tcaattaaaa ataggcattg gcgttgtttt
     5881 tgggcgacca aatgttcgcc ttgagccagt cttaacgcac acatcaatag ctttaattgc
     5941 ccacgggaaa gcacatcttc caccggtaag ccgttcgctt taaaacggaa atcggctttt
     6001 tgagctccaa tcatcgtata gccaagagct ttatcccgct caaaaccttg tgccagaatc
     6061 tcggcataat ccgccccttt ttcccagcct tgatgaaagc tcaagccgat ttcgatttcc
     6121 ggcaggaaaa attggcaggt tttctcaatt tcggggcgta acgcttcggc gtattcggct
     6181 cgcatttcgc tcacggcata agtggttttc accaattcga tatcccacgc tttgagttct
     6241 tgataagagc ggacttgttg caaagccgaa ttacgttgct ttaataaacg gcgaagattg
     6301 ttccaatgag cgtagaaatc agggtgctgg tgaaataagc cccagtccaa aaaagcacgg
     6361 cgaaagctcg gaccaccgtt aagtaaggtt aagccttcgg gggtgatcac ttgcatcggc
     6421 aataaatggg ctaaatcggc aattttgttg ccgtcttcac cgttgatttt aagtgtcgtc
     6481 tcgccactgc gaaatttctg aatgccgacc gaccaactgt gctttgcctc gtcaatttta
     6541 ccgtgtagta cgaaatcgtc tttatcgtaa tggataatgc ggttgctgat atggcttttg
     6601 aatgaacgcc cgtgtccaag atagaaaatt gattccaaca aactggtttt gccacttccg
     6661 ttcgccccga ctaaaaaatt aaaatgcggg ctaaatgcta aatcggtatg ttggatattt
     6721 ctaaaatggt tgattaataa acgggttaaa gccatagtta aagtgcgagg aataaaaaga
     6781 gtagccattt tagcaaattt gcaaaatttt gggaaaaatt aaccgcttgc ggattagaaa
     6841 gtggttcagt agaataagcc gtttattttt tattgaaaat taagaggaaa aattatgttt
     6901 ggaaaaggtg gcttaggcgg cttaatgaaa caggctcagc aaatgcaaga gcgtatgcaa
     6961 aaaatgcaag aagagatcgc ccaattagaa gtaacaggcg agtctggtgc gggtttggta
     7021 aaagtcacta ttaacggggc tcacaattgc cgccgaattg aaattgatcc atcattaatg
     7081 gaagatgata aagagatggt ggaagattta gttgccgctg cctttaacga tgcggttcgc
     7141 cgtgcagaag aaatgcaaaa agagaaaatg gcaagtgtga ctgccggtat gcaactgccg
     7201 ccgggtatga aattcccatt ctaatttaag tatgcaaacc agtcctttac ttgaaaattt
     7261 gatggaagcc ttgcgtgcat tgcccggtgt cggaccgaaa tcggcacagc gaatggctta
     7321 ccatctgttg caacgtaatc gttccggcgg tgtggcgttg tcaaaagcct taaatgaggc
     7381 aatgagccat atcggacatt gcaaatcgtg ccgtactttt accgaagagg aagagtgtac
     7441 gatttgtaaa aatcctcgcc gtcagatgag cgggcaactt tgtgtggtag aaatgccgga
     7501 agacattcaa gcgattgagc aaaccgggca attttcaggg cgttattttg tgctgatggg
     7561 gcatttgtcg ccgattgatg gtataggccc tcgtgaaatc ggcttagatt tattgcaaca
     7621 acgcttggaa caggaatctt tccacgaagt gattttggcg actaatccga ccattgaagg
     7681 tgatgctacc gcaaactaca ttgctgaaat gtgcagaatg tataacgtga aagctactcg
     7741 tattgctcac ggtgtgccgg tcggtggttc attagaaatg gttgatggca caacgctttc
     7801 tcactctttt gcaggacggc gtgatattga tatttaaagc tatttctgtg ctaacttaat
     7861 tctgatataa ttactcaact attttaaatt attattttga ggctaaaaat ggaaactatt
     7921 gacaaaatca aacaacaaat cagcgaaaat ccgattctac tttatatgaa aggttcaccg
     7981 aaattcccat cttgtggttt ctccgctcgt gcggtggaag cggtaattaa ctgccaagtg
     8041 cctttcggtt atgtggatat tttaaccaat ccggatattc gtgcggaatt gccaaaattt
     8101 gcaaactggc cgactttccc acaattatgg gtagaaggtg aattagttgg cggttgtgac
     8161 atcgtattag aaatgctcca aaaaggcgaa cttcaaacct tattaaaaga aaccgcagca
     8221 aaacacgcag cataatttca aaccagtatg ttaaggctct tatgtttaag agccttaatt
     8281 ttttcttgcg atttaggctt aaacttctta cctcaagagc tattttgttt tagaatgtca
     8341 aaattatttc gtaacataaa aataaaagga cacaacatgg cattaaaaga gttagattgg
     8401 gcaaatttag gcttttctta tatcaaaacc gattaccgtt tcattgcaca ttggaaagac
     8461 ggaaaatgga atgaaggcga attaactcaa gacaatacac tgcatattca cgaaggctca
     8521 actgccctgc actatgggca acaatgtttt gaggggttaa aagcctatcg ctgtaaagat
     8581 ggctcaatta acttattccg cccggatcaa aatgccgagc gtatgcaacg caccgcagat
     8641 cgtttattaa tgccacgtgt gccaaccgag ctgtttattc gtgcctgtaa aaaagtggta
     8701 aaagccaatc aagattggtt agggccttac ggttcggggg caacccttta tttacgtccg
     8761 tttttaatcg gcgtgggcga aaatattggg gtgaaagctg cacctgaatt tattttttcc
     8821 gtattctgct gtccggtggg ggcatatttc aaaggtggct tagcaccctc aaacttcatt
     8881 acaaccgact atgaccgtgc agccccaatg ggaacaggtg gtgtgaaagt aggcggtaac
     8941 tacgctgcga gtttattacc gcacgaattg gcggttgagc aaagttcaac tacccgtaaa
     9001 tttgccgatg cgatttattt agatccgaaa acccatacca aaattgaaga agtgggggcg
     9061 gcgaacttct ttgggattac caaagacaac aaattcatca ccccgatttc agagtcgatt
     9121 ttgccaagta ttaccaaata ctcattgcta caccttgctc aagagcgttt aggtatggaa
     9181 gcgattgagg gagatgtgta tatcgaccag ttagaccaat ttgccgaagc cggtgcttgt
     9241 ggtacggctg cggtgattac gccggttggt ggtattcaac ataaagacaa attccacgtc
     9301 ttctattcag aaaccgaagt ggggcctgtc acccgccgtt tatacgcaga attaaccggt
     9361 attcaatttg gcgatgttga agcaccgcaa ggctggattg taaaagtaga gtaattttac
     9421 acaagtaaca agcggtcgaa ttggcaaaac tttttgcaaa ttcaaccgct tgtctttatt
     9481 tagagaatat gaaaaagtta atttttttag gtttatcagc acttgcatta gctggttgtt
     9541 cctcaacaat ttctaatcct aatcaactga ttgggcaatg gcaatgcact attgagtacg
     9601 atgattttaa tattcgtacg gtggataatt tacgattttc cacaaatggg actatgacca
     9661 atcaaggtgg tatatattac cctattcaaa agtcgatttt tgagtattca ttacaacaga
     9721 atgggcgctg gagtgtgaaa aacggggcta ttgtttatcg tatcgtctca gaatctgtac
     9781 agcgtagcca tcgttcacaa atatggtctg aattacaacg tgatgcggag ctacaacaat
     9841 ttgaagagaa tttatttagc tcactttctg atagtgataa taataaaaca gtggaactaa
     9901 tcatcactga ttttgatgaa aaagaaatgg atatcaagca agaaataaaa gggcataaag
     9961 cttataaagg gcaatgtata aaacagtaga ggtaaaaatg attcaacgtt ttgaagtagg
    10021 tagccgtttt tcggaaatgg caatacataa cggtgtggct tacttggcag ggcaagtgcc
    10081 gttagatgac accgccgatg cttacaccca aacccagcaa gtgcttgcag aaattgataa
    10141 atggctggca aaagccaaca gcgataaaag taaaattcta atggctacgg tttatttaaa
    10201 agagatggca gattatgcgg aaatgaaccg tgcgtgggac gaatgggttg ccccaaataa
    10261 cgctccacca agagcggcgg tggaggctaa attagccaat ccaaattgga aagtcgaaat
    10321 tgtggttacc gctgcggtat aaatgaaaag cagaaagacg atctctgttt ttcattatga
    10381 ttcgtacatt ttttcgattt gttgcttata gcgttctaga atgacctttc gtcttaattt
    10441 taatgtaggc gtaatttctt ccattttggt gctaaatgct tgcgaaagta gtgtaaactt
    10501 tttgatctgt tcaaaacttg caaggtcttt ttgtaattcg ttaatgcgtt gttcaaacat
    10561 tctgacaacc tcataatgtt taatgagttc taatctgtct tgatagcgaa tattgagctt
    10621 ttttgcatac tcttcgaggc tatcaaagca aggaactatc aacgcagaaa catatttttt
    10681 ggcatcagca atcaccgcaa tttgctcaat aaacttatct ttacctattt ttccttcaat
    10741 gtattgtggg gcaatatatt taccgtttga agttttcatt aattctttaa tacgatcggt
    10801 aatataaaga ttgccttccg aatccagttc accggcatct cccgttttta gaaaaccttc
    10861 agcagtaaag gcttgagcag tggcttccgg ttttttgtag taacctttca taaccaagcc
    10921 tccacgcact aaaatttcat tttcttcact aattttgacc tcaacatcag gcattaaggt
    10981 accggttgag ttgatattaa agcctttttc ctgccagcat gaaatagtgg cagtagtttc
    11041 ggtcattccg tatccaagtt ttacattgat gcctatactt tggaaaaata gcccgataga
    11101 cggatctaat ttagctcctc cacacggcat catacgaata cgaccgccta gtaaggctcg
    11161 taattttcct agcaccaatt tatctgccat aatgtactgc aagcggtgga aaaaggctga
    11221 ttttttacca aacagattgt cttcggcggt acggattgcc catttaaata acgctcggcg
    11281 atgtatcggt gcttgttgga ctttatccca caccgcagta tagatttttt catagaacct
    11341 tggtacggca cacattaatg taggtcgtac cgttgagagt gcttgacgta cctgttgagg
    11401 atcttccaga tagcaattta ctgcccctct gtatagcaca taagtgaccc aagcacgttc
    11461 aaagatatgc gataaaggta aaaatgaaag ggatatatca ttttcgtcaa tatgagggag
    11521 tgctttatta tgtgcctgaa gttgatgagc taaattagca taatctaaca taacaccttt
    11581 aggctcaccg gttgttcccg aggtataaat taaagtgaat aaatcctcta agcatttatc
    11641 atttaaacgt ttggttaatt cagcttcatc ttgattaacc ttaatgaaat cttgccaatg
    11701 ttgagcgata gggaaatcac gcagatctat tgagtctttc atcgcgacaa tttttattaa
    11761 tagcgaacag ttgttcgcta tttctatggc ttgatcatat tgttcctgat cgccaacaaa
    11821 gaggattttt atatccccgt cattcaggat atattcaagt tgtttggtgg tactggttgc
    11881 ataaatcggc actgctaccg cacgaatttg cattgcagca atatcggtaa ttgtccaacg
    11941 aggcatattt tgtgcaaaaa tagcgatttt ctcttgaacg gcaagaccgt ttgccagcaa
    12001 ggcataagaa agattattga cctgtttttg taattctaac caacttattt ctgaccattt
    12061 ttcatcttgc ataaaacgta aagctgggtg gtggctaaga gcctgaactt gctggtggaa
    12121 acggtggata aagtgaaaat ctaaagtgct cataatctta tttttacttt ctatttcagt
    12181 gaacagttgt acgctaatat aatagaaaat atgaaaaaaa gaaacagttg tactctgaaa
    12241 caaagggttt tggataggaa gtaatcaagg caatagaaat agataagtag ggtatcgttt
    12301 agtacaaatg caatattttt caaaaatgag accgcttgta tatgcaacaa gcggtctgtt
    12361 ttgttaaaaa ttttgcaact aaattcgttc aatatcaaat tgagctaaat caatcacatc
    12421 aggtgtaccg taaaaagcac agagggcttt acgcaaggtt tcagctcgtt tgggaaggta
    12481 gccacgttct gcatagagct tgacttggtc gtacactgct tgtttaaagg ctgaattatc
    12541 gccgggattg cccgagagat tgtcggcact agcaaaataa cgaaaaccgg cagcagttgc
    12601 taacacccat tcaatcgctt gcggtttgat ttccgcactt tcaaattcac gttggcgttc
    12661 ggcagagcgt ccgtccggct cgtaccaata gccaaaatct tcaagtttac gccgagcttc
    12721 tccagcaacg agccaatggg caatttcgtg caaggcactg ctgtaatagc cgtgagcaaa
    12781 taaaatcaca ttgtaagggc gttcgctcgg cacaccatct tcgtccataa attcgggcaa
    12841 gtaaatcgga taattacccc cccgctctag gcgagtgtta tattcatcag aaaagcattg
    12901 attaaaaatg cgaataatgt cttcaatttt atgattttct tgattcattt cttttcttta
    12961 taacttattc agccaagcta aaaattgctc ggcatccaaa aagccagtaa cacgagattg
    13021 gctcatttca ttgccgtttt catcaaaaaa cagaatcgtt ggcaaaccta atacattaaa
    13081 gtgtttcatc agctcgatat tttcagccga gtttttcgtc atatcgattt gcaacactac
    13141 catttcattc agtttgttct gaacattttg gtcactaaag gtgtattttt caaactcttt
    13201 gcaggcgaca caccagtcgg catagagatc gagcatcact tttttacctt tggaagcggt
    13261 caattttgtc tctaaatcgg caagtgattg aattttttct aacgctaagt gcggtgtagt
    13321 ttgctgttga gtggttgagc cgttccaagc taaatctgcc caaggtttag cggcaatggc
    13381 taaagcgagc aataataaga ctttgatgat ctttttcgtg attgaattag atggaatcgc
    13441 atccaccaac cagatcaaaa atgcaaccgc aagggccgac cataaaaacg gttcatagtg
    13501 gcttggcagc acacggctta ataagaacac cggtaaggca agcataacaa aaccgaatgc
    13561 agctttcact tttaacagcc attcgccgga ttttggcaga attttgttgc cgaataaggt
    13621 aatcaaaatc agcggtaagc ccattcccag tgcgagtaga tagagggcta agccaccggt
    13681 gactaaatcg ccactttgtg ccacataaag caacgcaccg gaaagtgggg cagaagtaca
    13741 aggggaagca attaagcctg cgatcatccc cattaaaaac acgctaccca acgcaccacc
    13801 ttgctgtttt tggctcattg cattgagttt ttgttgccag ctatttggta gctggatttc
    13861 gtataagcca aacattgagc aggcaagcag aataaagacg atagataaac caatcaacac
    13921 cggtgggctt tgtaaggcga tttggaaagg caagccgata gccgctacaa ttaagccaag
    13981 taaggtgtaa gtaactgcca ttccttgcac ataggcaata cttaacagca atgctttagc
    14041 ggtagaaggg cgttgcttat ttccaattac aatcgcagag agaagtggta gcatcggcag
    14101 tacgcaagga gtgaatgcta atccaacgcc taatacaaaa aaccaaaaaa tggaaaaacg
    14161 attgttagct aaattttcag ccagttgatc ttgctctgct tttgccacat tttcaggggg
    14221 cgccatattg tcggtttttg caaaattttc gctcttttcg accgcttgtg cttccagttg
    14281 cgccagttct tcaggtgtag cagagagaat actgtctaat ttaagctcaa cccgttccgg
    14341 tggatagcaa aagcctttgg tacacccttg atattccact acgattgagg cgttgtcttt
    14401 aatttcttta aacggtacct ttagccctaa gtggttgcga tagatttcca cctgcccgaa
    14461 aaattcatcg ttatattgct cggcagcggg aaaagtgatg tcgcctatct caatattctg
    14521 tggcgtgaca cggatttct
//
LOCUS       DANLXB010000056        14295 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLXB010000056 DANLXB010000000
VERSION     DANLXB010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14295
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(153..1700)
                     /locus_tag="PXD41_001079"
     CDS             complement(153..1700)
                     /locus_tag="PXD41_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL6288625.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            complement(1720..3087)
                     /locus_tag="PXD41_001080"
     CDS             complement(1720..3087)
                     /locus_tag="PXD41_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL6288626.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            complement(3134..3892)
                     /gene="tcdA"
                     /locus_tag="PXD41_001081"
     CDS             complement(3134..3892)
                     /gene="tcdA"
                     /locus_tag="PXD41_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL6288627.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            complement(3974..5938)
                     /locus_tag="PXD41_001082"
     CDS             complement(3974..5938)
                     /locus_tag="PXD41_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6288628.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            complement(6033..8729)
                     /gene="gyrA"
                     /locus_tag="PXD41_001083"
     CDS             complement(6033..8729)
                     /gene="gyrA"
                     /locus_tag="PXD41_001083"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL6288629.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            complement(8826..9206)
                     /locus_tag="PXD41_001084"
     CDS             complement(8826..9206)
                     /locus_tag="PXD41_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL6288630.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            9271..9984
                     /gene="ubiG"
                     /locus_tag="PXD41_001085"
     CDS             9271..9984
                     /gene="ubiG"
                     /locus_tag="PXD41_001085"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL6288631.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            10047..10985
                     /gene="ttcA"
                     /locus_tag="PXD41_001086"
     CDS             10047..10985
                     /gene="ttcA"
                     /locus_tag="PXD41_001086"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL6288632.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(10969..11616)
                     /locus_tag="PXD41_001087"
     CDS             complement(10969..11616)
                     /locus_tag="PXD41_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL6288633.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(11702..13360)
                     /locus_tag="PXD41_001088"
     CDS             complement(11702..13360)
                     /locus_tag="PXD41_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL6288634.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            complement(13360..13776)
                     /locus_tag="PXD41_001089"
     CDS             complement(13360..13776)
                     /locus_tag="PXD41_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL6288635.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            complement(13766..14062)
                     /locus_tag="PXD41_001090"
     CDS             complement(13766..14062)
                     /locus_tag="PXD41_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6288636.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
BASE COUNT         3763 a         3447 c         2973 g         4112 t
ORIGIN      
        1 aactaacccg atttttttat tccaaataag cataacgcat aaaataatag cttgcacttg
       61 aaataaatta gagttttgta tgattggttt tcatcacaag caaacaagcg gtcaaaattg
      121 gcaatttttt gtcaaattta accgcttgta ttctatactt tgtttatcaa tgccagcaca
      181 tctgcaaata attgtttaaa taaagttgga attgaatgct ctccccgttg ccccatctca
      241 ttggctaatg caatggctaa atcaggcttt gagcttcgtt gaatcgctcg tttaatgatg
      301 taggacaccg gatatttttc ttgtgaacgc caatttgcaa gctgtataaa cacattccgc
      361 aagcctgctt tgtagaaaaa atgttcgata tctttttgtg gcaacatcgt gagccggtga
      421 gcaaaatcct cttccatact ttttaccgta tctgcataac gtttgccgga atcgtcaccg
      481 tcagtcagca cataccattc gatccccatt gctctggcgt atttaattaa cggacgtaag
      541 ccacactgag caaattcaac gattttgatc ccttccattt ccaaatgaat atctaataat
      601 ctcgccagct cttgcaaaat ccaaacctcc gtttccccct caaccaaaat ccacgcttta
      661 gcaaacagtg ccaagccacg attatggtga atatgaaagg ttaattttcg caaatcttcc
      721 ttgcctaaac tgtggcgttc aagccaatag gcttgggtat gatcgtgatg acgcaccaaa
      781 cggcagattt cacgcagagg cacttgcgat aacaattcaa tagaattagt agtggtgatc
      841 cgttggctgg gtaaaaaacc gagcagttcc caaaaaatcg caatcattcg agggtgtagt
      901 tgagcattca gatcttcaaa taaaataatc ggcttttcta ttactgtaga tctaggatta
      961 aacaaaaata gagtagaaat atgctgctga gcagattcga ccaattccgg ctgctgtttt
     1021 aggcgtaaac agagggattt tactttttcc caccacaatg cggtgtcttg catactggtt
     1081 ttgatcaaat agcgactttg gctggttaga aaatagtatt tcagtagcga agagagggcg
     1141 tttaattcac gttgaaaatc gtcttcaagt tgagacgatc ctttaagtaa taattcatta
     1201 tgcaccctgt tattgagcct tgcatcacgc aggcgataaa cagggtgatg gtaaataaac
     1261 tgccgaatgg cgttttccgc ttgttctatc tggatcggtt ttaggctttg atccacaaat
     1321 tgatagtcgg tgctaatctg ctctccgtgt aattttccgg ttacggcaag cgaaacacag
     1381 cggtgattat caatataaaa cgcggcttgt gccaaataag cgggaaattg caccgctaaa
     1441 tcgtgctgat gctcttcaca aaaggtaaac accagttgaa tgtcccgcac ttggttgggg
     1501 gtatcggtgt attgaatatg gaaatctttg aactgaaatt gatacaacgc ctgctcaagg
     1561 ttaaaaatca ggcttaatgc atcaatcaga ctggatttcc cccacgcatt ttcgccaatc
     1621 aataccatat ttggtcgtag ctggagcgat aaatggttaa taccacgaaa gccactgatt
     1681 tcaatatgct ttaaatacat accttacccc ttgttagcat taccctttta caatttcata
     1741 gcaaggttgg tacgcctcac ccgttggaat tttcatacgg tgttgaacca caaaacgctc
     1801 caacagttta tctatatgct ccattaattt acgatcgccg tgtaatttaa acaccccata
     1861 tttctcaatt aaatcggagg tctccggctt aatattacct gcaacaatcc ctgaaaatgc
     1921 ccgtcttaaa ttcgcagcca gctgctcttt tggctgtgct aaacttaaat tcaggtttgc
     1981 catattttcg tgggttggaa taaatggcgt aataaaatct tcctcaattt ttaacgacca
     2041 gttgaaatta taagcatcgc cactttcata acggctgctt tttacctcaa tcatcgcttg
     2101 cttgacttta cgagccacca acaccgagtc atcaataata atttcataca aactgcgagc
     2161 ttcttcgcct aaagtttcgc caataaattg atcgatggca tagaaatagt ctgccgattc
     2221 tttcggggcg gttaaaatca gtggtaattg ctgagcatgg ttagccgggt ttaacttaat
     2281 accgataata tacagcaact cttccagcgt tcccggcccg cccgggaaaa ccacaatggc
     2341 gtgccctaaa cgcacaaagg cttccaaccg tttttcaata tccggcataa ttaccaattc
     2401 attcacaatc gggtttggcg gctcggaggc aataatagac ggctcggtaa tgccgataaa
     2461 acgcccgttt ttataacgtt gattggcgtg tccgatagcc gctcctttca tcggggcttc
     2521 catcacaccg gctccgcaac cggtcacaat attcagctca cgcaagccaa actcttgccc
     2581 gacggcacgg caatattggt attcggtttc attaatcgaa tgccctcccc agcacaccac
     2641 caaatttggg tcggtattca tttcaatcgc tttcgcattc cgcaaaatcg aaaatacggt
     2701 attcgtggtt aaggcttcta aagaagtctc ttcaagcggt ctaatcgcat tttttaacgc
     2761 attcacaaac acaatatccc gcagcaccgc aaaaaggtga tattgaatat tcaaaatcat
     2821 cttgccgtca acaaacgcag tttcgggtgg attatgcaat tcaagcgaca cgcctttttc
     2881 acgggttaat aagcggattt caaaatcagg gtattggctt aacaacgctc ggctgtcatc
     2941 ggtatgcaca ccggaattta gcaccgccaa agagcaatta cgataaagtt gatgcaaatt
     3001 accctgcgta ttctttgcca acaactccat ttccaaatgg gaaagctgtt ccatactccc
     3061 tttcgggttg actcgatgta ttgccattat ttactccttg atttgcaaaa aattcattta
     3121 atatgaccgc ttgttatttt aatagtttat caatcacccg actcaccgca aaaaagccga
     3181 acgttgccgt caccattgtc accgctccaa agccgttggc acagttcatt gttgccgaca
     3241 cctcacaggc ctcacccatt tgtgggaaaa tcagttgctg agtcgaagaa acgcactcca
     3301 cgccgaattt gtttttattg ctgaaaccgt actctttacg caacaggcta cgaacccttg
     3361 ccgccaacgg atcttgcacc gttttgctta aatcggtaat ttgaattttg gtcggatcgg
     3421 tctgcccgcc cgccccgccg gtggtgataa ttttgatctt attgcgttta caaaacgcaa
     3481 tcatcgccgc ttttacccgc aaactgtcaa tcgcatcgat cacatagtca tatcctcgat
     3541 tgaggtagtc tgcgagatta tcctgcgtta agaaatcatc aataatttcc accacacatt
     3601 cagggttgat ccgctcaatc cgctctttca tcgcttcggt tttcagttga gccaccgtgc
     3661 cactcattgc gtgaatttgg cggttgatat tggtcacgca aatatcgtcc atatcgatca
     3721 tcgtgatctt accgatacct gagcgagcca atgcctccac tgcccacgag ccaaccccgc
     3781 caatcccaat cacgcaaata tgcgaacggc gtagtttctc caatccttcc ggcgtataaa
     3841 ggcgaccaat gccaccaaaa cgttgttcgt agttatctaa tctttctgtc attttgcttc
     3901 acatttgtag gggcgaaaaa tttttcgccc aatcatttta tccatcaagg gcgaataatc
     3961 attcgcccct acattagata ttcccgtttt taatattttc caacgcttcc caccgctcaa
     4021 aggcttgctc taacgcggct tcggtatcgg caagtttttg tagctgggcg ttggtgtagc
     4081 ttggatcttt ggcgaagaat tcggcactat ttacttcggc ttgcagggct tcaatgtcgg
     4141 cttcaagctg ttccatttta gccggtaact cgtccagttc acgctgttct ttgtaggaaa
     4201 gtttggtttt cttcgtcggc tctgctttcg ttttttcctg atcggctttc tgtttctctt
     4261 gctccgcaag cggtgctttt tcctctattt tttgcaaatt tttactcgaa tttaaccgct
     4321 tgtcggcagt ggcggcgaag taattttcct gctgttgttt ggcatcgaaa tagccgccga
     4381 catatttatt caccacgcct tcgccctcga agaagtagca ttcggttacg gtattatcca
     4441 caaattgacg gtcgtggctc acaataatca gggtgccttg atagtcggtg agcatctctt
     4501 ccagcagttc gagggtttcc acgtccaaat cgttggtcgg ttcgtccaaa atcagcaagt
     4561 tgttcggttt gagtaacagt tttgccagca acaagcagtt gcgttcacca cccgagaggg
     4621 ctttcaccgg tgtcatcgcc cgttttggcg ggaacaggaa gtcttgcaga tagccaagaa
     4681 cgtggcgttt caccccgttt acttctacat cttgcttgcc gtctgccacg ttgtccatca
     4741 cggttttttc agggtcaaga tcgactcggt attggtcgaa gtacgccact tccaattttg
     4801 tgccacaacg cactgaacca gatgtcggct gaatttcgcc aagtaacagc ttgatcagcg
     4861 tggttttgcc gatcccgttc gctccaatca gggcaatttt atcgccacgc aaaatggtgg
     4921 tgctgaaatt tttcagcagg gttctgccgc cgatttcata gccggcattt tccacttcaa
     4981 acacaatttt gccgctgcgt gcggtgttgt cgatctgaat tttcgccgtg ccttgtacct
     5041 ctcggcggtt tctacgctct tcacgcaacg ctttcaacgc tcgcacacgc ccttcgtttc
     5101 gggtgcgtct tgccttaatc ccttgacgga tccagacttc ttcttgggcg agttttttgt
     5161 cgaacagctc attttgcaac gcttctactc gcagatcctc ggctttttct tccaagtatt
     5221 tatcgtaatt gcttgggtag gaaaccaatt tgcctcgatc taaatccaca atccgagtcg
     5281 ccattttgcg gataaaggca cggtcgtgcg agataaaaat aatactgcct ttgaaatcca
     5341 ataacagatt ttccagccac gcaatcgcct caatgtcgag gtggttggtc ggttcgtcca
     5401 acagcaatac atcaggatcg gcaaccaacg cccgagccaa tgccgcacgg cgtacccaac
     5461 cgcctgagag ttcgcacagg cgtttgtcgg gggcgagttc cagcagtttc aaggtgtctt
     5521 gaatgcggtt ttcaaactgc caaccgttag cgtgttctaa ttgcgattgc accgctgaaa
     5581 gtttggcgag cagttcatcg ctgtaatcgg tctgcatttg cagggaaatg tggtgatatt
     5641 gcttcaataa gtcggcaaga tgggcaatcc cctccgccac ataatcgaac accgtttctt
     5701 caatatggcg gggcggatct tgttcaagac gtgtaacgac aatgtctttt tcaaatacca
     5761 acttgccgtc atcaagctga acttcgcccg ccagaatttt catcagggtc gatttacccg
     5821 ccccgttacg ccccaccaaa caaacccgct cgccgggttc gatatgtaat tcagtatgat
     5881 ccaataaagg atgatcgcca aagcctaaat aggcgttgga aagattgata agtgccatag
     5941 tttttattat ctactgtatg atccaaaaac ggtcgaattt ccttctattt ttgcaaaaaa
     6001 ttgtgaaaat tcgaccgctt gtttagttaa gattattctt cagttgatgt ttctgctgtt
     6061 tcggcatttt ctaatgcgtc taggctttca ttttcatcgt cttcaggctc gcagactcgt
     6121 tcaaggctaa caacttgttc gtcttctgcg gtgcgaataa tacgtacgcc ttgggtgttt
     6181 cgtccaacga ggctgacttc tgccactcgg gtgcgaacca gcgtgccggc atcggtaatc
     6241 aacataattt ggtcggtttc ctctacttga actgccgcaa ccactttgcc gtttcgttca
     6301 ttcactttaa tcgaaacgac ccctttggtt gctcgggatt tcaccggata ttcgctaatc
     6361 accgtacgtt taccgtagcc gttttgggtg acggttaaaa tatcgccttc ggtgcgagga
     6421 atcactaaag aaaccacacg gtctttatca aggctgacgc tggaggaatc ttctgcctct
     6481 tcattgtcag tttcaataat ttcagcttct tcaatttctt cgcttgaaat ttcggtggta
     6541 gaaagtttaa tacctcgtac gccggtggcg gtacgtccca tcgcacgaac tgctgtttcg
     6601 gcaaagcgaa ctactcgccc ttgtgccgag aacaacataa tttcgctgtt accatcagta
     6661 atatctaccc cgatcagctc atcgccttca cgaagtttta acgcaatcag accgcttgca
     6721 cgcacgttgc taaaggcatc aagggaaact tttttcacta caccgctagc tgttgccata
     6781 aagataaact tatcggcact aaattcaccg tttggaatcg gtagaatcgc ggtaatacgt
     6841 tcgttttctt ctttcactaa cggcagaata ttcacaatcg gcgtgcctct tgccccacgg
     6901 cttgcttgcg gtaattgata cacttttaat tgatataaac gcccacggct tgagaagcaa
     6961 agaatggtgt cgtgggtgtt tgccaccaag agtttttcga tgaaatcatc ttctttcatc
     7021 ttggttgccg acttaccttt accgccacgg cgttgtgctt cgtagtcgga taacggctga
     7081 tatttcacat agccggcgtg agaaagcgta accaccacat cttcttgtgc gattaagtct
     7141 tcaatgttga tgtcgccaga ggctgcggta atttcagtac ggcgttcatc attaaaatcg
     7201 gtttttacac gttctaactc ttcacggatc acttccatta agcgttctgg gctggttaaa
     7261 atgtggatta attcgccaat ttcagttaag agttctttgt attcttcaac gattttctcg
     7321 tgttctaaac cggttaagcg gtgtaagcgt agctctaaaa tcgctctggc ttgagcttca
     7381 gataaatagt attcgccatc acgcactcct aagtgttcag gtaaatcttc cggtcgggaa
     7441 gcaccaacac cagcagcctc taacattggt gcaacattgc ctaatgccca agggcgagcc
     7501 aataagcctt cacgggcttc ttctgcggtt tttgaggctc gaattaattc aattaccggg
     7561 tcgatattcg ctaacgcaat cgccaaacct tctaaaatat gggcacgttc acgggcttta
     7621 cgcaattcaa aaatcgtacg gcgtgtgacc acttcacgac ggtgtttaac aaaggcttcg
     7681 atgatctggc gtaagttcag cacttttggc tgcccattat ctaacgccac catattgata
     7741 ccaaacgtga cctgcatttg ggttaaagaa taaaggtggt ttaacaccac ttcacccact
     7801 gcatcacgct tgacttcaat aacaatcgaa atcccttttt tatcggaata gtcatcaatt
     7861 ttgctgatgc cttcgatttt cttctcttta accagctcgg caattttttc aattaatttt
     7921 gccttattca cttggtatgg cagttcggtt acaacaattt gctcacgccc tttatcagtt
     7981 gtttccacgc tggctttcgc gcgcacatac accttgccac gaccggtgcg gtaagcctct
     8041 tcaatccctt tacgaccgtt gataatcgcc ccggtcggga aatccggccc cgggatataa
     8101 cgcattagct cttcaacact aatctgttca ttttcaatat acgccaagca accatctaat
     8161 acttcgccta aattatgagg tggaatattg gttgccatac cgaccgcaat ccctgaagaa
     8221 ccattgacta acagagccgg aattttggtt ggcaatacat caggaatcat ctctttgccg
     8281 tcatagttcg gtgagaaatc caccgtttct ttatcgagat cggttaataa ttcctgcgta
     8341 attttctgca tacgcacttc ggtataacgc attgctgccg gtgcatcgcc atcaatagaa
     8401 ccaaagttac cttgcccgtc caccaacata taacgtagtg agaacggttg agccatacgc
     8461 acaatagtgt tatacaccgc aaagtcaccg tgtgggtgat atttaccgat cacatcaccg
     8521 accacacggg cagatttaac gtgcggctta ttataggtgt tgctgttttg atccattgaa
     8581 aaaagcactc ggcggtgtac cggctttaaa ccgtctcgta catcaggcaa ggcacgccca
     8641 acaatcaccg acatcgcata gtcaaggtaa gaggttttta attcgtcctc aatacttacg
     8701 ggaataatat ctttggctaa ttcgctcatt gaaatttcct aattttatta gtaaaagagc
     8761 cttaaataag gcgaaaaaat tggcgagatt atagcataaa aagcaacaaa aaggcgtaca
     8821 agcggtcatt ttctttcgct aaaacgtgga tttgccggca ttcttaatgc aattcgctcc
     8881 cgatttacag tcagagcggt ttcagtcggc tgataatcta gccagagaga gggatcttgt
     8941 ggtaaatgtt ccgcccagaa atattgcacc ttaaaacctc ttgctaaaca ttcctcgtgt
     9001 aacgcatcgt aacgcttttt caaaaacgtg agtttattga agaaaaaccg aacgtgtccc
     9061 tcgcccagtt tgtaatcttc tggctgtcct tttaggctaa atttgccttt cgctaccgca
     9121 ttcggaatcc gagtaagttc acgatgttcg gcaagcagat gttgatcgca taattccgtt
     9181 ggcggaacaa ggttaattcg ggtcattctg attttccttt taggctaaat gcgttatagt
     9241 aatgccctaa atttaccata ggaacagttt atgcaaaacg tcgatcagca agaaatcaca
     9301 aaatttgaaa atatggctaa aacctggtgg gatccaaacg gcagtttcaa gccgattcat
     9361 ctgcttaatc cactgcgttt agcctatatt ttagaaaaat cgaacggttt atttggcaaa
     9421 aaggtgttag atgtcggctg tggtggcggt attttaagtg aggcaatggc aaaacaggga
     9481 gcgattgtta ccggcatcga tatgacctct caaccgcttg aagtggcaaa gcagcacgcc
     9541 aaagaaagtg ggttagagat tgattaccaa caaaccacga ttgaaaattt tttagcaaaa
     9601 atgaccgctt gtaatcaaga aaaattcgat gtgattactt gtatggaaat gctggaacac
     9661 gttcccgatc cgctttctat cattcaaagc tgtaaagccc tgctcaaacc tgacggcgtg
     9721 ctgtttttct ctaccatcaa ccgtactttt aaagcctata tgttggtaat tatcggggcg
     9781 gaatatgtgc tgaaaatgtt gccaaaaggc acgcacgaat ttgaaaaatt catcaagcct
     9841 gccgaattgt tagcttggtg cgatcaggct gatttacgtt gccaagagat gagaggctac
     9901 catttcaacc cattaaccga aaaattttgg ctcaataatg atgtgagttg taactatatc
     9961 gctacgctga agccgaataa ttaacttgca aaatagtgcg aaatctttac tatacaccgc
    10021 taatttctaa gcctagtaca actattatga cagacgatat tcaaaaatct gataaaaaaa
    10081 ttacttataa tttcaacaag ttacaaaaac gtttacgccg taatgtcggt aatgccattg
    10141 ccgattttgg tatgattgaa gagggcgacc gtgtaatggt ctgcctttcc ggcggtaaag
    10201 acagctatac gctgttagat attttgctca atttacagca aagtgcaccg gtgaatttta
    10261 gtgtggtagc ggtcaattta gaccaaaagc aaccgggatt tccggaagag gtattgcctc
    10321 gctatttaga aagcattggc gtggaataca aaattgtgga agaaaacacc tacggcatcg
    10381 taaaagagaa aattccggag ggcaaaacca cctgttcact ttgctcacga cttcgccgtg
    10441 ggattttata ccgcaccgcc accgaattgg gtgcaaccaa aattgcatta gggcatcacc
    10501 gtgacgatat gctggcgact ttattcttaa atatgttcta cggcggcaaa atgaaaagta
    10561 tgccacctaa actgatctct gatgacggca agcaaattgt gatccgccca ctcgcctatt
    10621 gtaaagaaaa agacattatc aaatatgccg aagccaagca gttcccgatt attccgtgta
    10681 atctgtgtgg ttctcagcct aatttacaac gccaagtggt gaaagaaatg ctgaatactt
    10741 gggatcgcca atacccgggg cgtttagaaa caatgttcag tgctttgcaa gatatcgtgc
    10801 catcccactt atgcgatccg aaattgtttg attttaaagg gattaaacac ggtcaaacca
    10861 ttgaaggcat agaaggcgac accgcttttg atgatgtcaa aattgaagcc aaaaccttct
    10921 tatacgaaga tgacgataac aattttgccg aagcgggaat gattcagttt aaagaagtaa
    10981 attaatacgg caaaagtcga aactaaaggt agcagagcaa tttccgctac ctttatattg
    11041 taactccccg atcatctgca ccagccccgc caaactctcc gcctgcattt tttccatcac
    11101 attggctcga tgtacttcca ccgtacgcac tgaaatcgct aatttatctg cgatctgttt
    11161 attggtgaaa ccttgcataa tcagtggcac aaggttacgc tctttttccg tcaatttggc
    11221 gtaattttgc gaaatttcac gaattttcac cgctttttca cttacttttt ccgcctgtgc
    11281 aatcgcctgt tttagctgtt caaaacttgc cggcttttgc agaaaatcca ctgcgccttt
    11341 tttcaattca gcgactgcca tcggcacatc accgtgggcg gtcataatca ccaccgccag
    11401 ggtcgattgt gcctctcgca gttgttgatg aacctgttgc ccgtctggca gcggcattcg
    11461 aatatctagt aacagcacgc cttgccggtg taaatccgcc tgtgccaaaa aatctaggct
    11521 ggattgccac gtttggattt ccaccccaag cggggcaagc aggaacgaca tagcgtctaa
    11581 aatgctttct tcgtcatcaa gaatgtgaat aatcattttt tcttttttcc gtaggggcgg
    11641 gtcctgtgcc cgccctgaat ttgataggat ttacgggcag gcacaggacc tgcccctaca
    11701 tttatatttg agggagtaaa agcactacct tcgccccgtt ctccccgttc gccaatacaa
    11761 tccgtccgtt gagcgattgc atcagccgtt ggcatagcac caagcctagc cctaagccgt
    11821 gtggtttgtc ggtgcgaaat ggcacaaacg gaaattcaag ctgggcaggg gaaaaaccgc
    11881 cgccgttgtc ttcgattgca atttccagcc cgttttcgac cgcttgtaac cgcaccgata
    11941 tctcgcttgc accggcttgc agggcgttga gcaggcagtt cgtcagtact tgttccagta
    12001 ccgtggcgtg taaattaagc cgaaaagtgc ggtcggcaat cagcgagatt tgtgcattct
    12061 ggcgattttc caccgccaca aactcgatca cattagtaat caattggttc aaaatgaccg
    12121 cttgcggttc accactcggg cggttttgcg cccagtcccg aatgctctgc atcgttttca
    12181 ctgcccgatc tacctgcgca atcagcttat ccaaaatccg ctgttgataa ggatcgctgt
    12241 tttggctttt cagcccctcg gcgtacattc gcaccgccga caacggctgt ttcagttcgt
    12301 gagcaaaacc ggttgtcatc tcgcccaaca aagcaaggcg gtcggctcgg gtcagttcct
    12361 gctgatactg ctgcattttg cagtgtgcct gctgtaacgc cttgcttttg cgatagacct
    12421 gataacgcag ggcgacaagg ttgagcaaaa tgaacaacac caccgccaac aagccgaatt
    12481 tattgagacg aacccaatcc agcaccgttg cccacaggct tttttgttgc gggtggcgat
    12541 acagttcacg cagaatgtga tcggcttggg cggaagaaaa cggcaacgtc cagcggggta
    12601 ggtcgggatt gtggctgttt agcaagcgtg tggcaagctg taccgccagc tcgtttggca
    12661 cattttccat tgccgccagc gaccagttcg gcaacaacgg cgtgctggca aggcaaccct
    12721 gcgcctgtgg gttttgcaaa attaagcgaa aatccgaccg cttgaacttg ccctctttct
    12781 ccaactcttc cagcaaacag accggtacaa tcgccgcttc cacctgtttt tccgccagca
    12841 aagccaacgc attttccacc ggaaaaccgc taaactgcac cgaaaaatcc cgattttgcc
    12901 gcattcctgc ttgatgaaac tgatacaacc caagcaaaaa accgccgaaa gcatcgttat
    12961 ccaccgcact gatagtctga tttttcagat cgcttaactg ctgataatgg ctgtcggcac
    13021 gcacccaaat gctactgccc accgcccctt gctcaccatt tgccgaaaac ggactgttga
    13081 gcgtggcaag ccatcgcaca ttttggttac tcaaatagaa aaactgagct tgattggtca
    13141 gcagaaaatc caactccgcc cggcggctcg cctcgttaat ccccaatgga accagctcaa
    13201 accgctcgtt gggaaactgc gaatttaacc aatccaccca aggctgccaa tgggtgcggg
    13261 tgtaggcttc cccacgctga gcgagaatgc cgatttggtg ggtttcggct aatgaaaaag
    13321 atgaaaaaag gagaagaaaa agagtgagaa accgtttcat tagcgagttt ccgctaaaaa
    13381 ttcgctgacg gaaataattt caacattccg ataagggttc atactgagga gatctttttt
    13441 atcgcccgtc actaaatact tcgcttttgc actgatcgcc acttctaaaa atttattatc
    13501 tttgggatct tggcaatctg taatcgtttc tttaatttcc acaaacttta ctgcatccaa
    13561 caaattggca ataaattctt ccctttcctg aatactgaaa tatttagcaa atttcggtct
    13621 agcggagact tctaaaaatt cgtcaaaagt cgcttgcgag acacaaatgg tatagcctaa
    13681 taaggctttt ttcactgcta aattgggatt tgattttggg aacaataaac cactaatcaa
    13741 aatattcgta tcaatcacta aataatcaga gtgcattacg ttcctcatca atcattttat
    13801 ccaactcttc aagcgtgatt tctgcaagag ctgccggcgg attcttatct cgctctgcaa
    13861 gcatttcaag caaacgctgt tttgctaata atcgccgagc ttcaaccgct tgatcgtaag
    13921 gaaaaagcac cattgtcggt ctgccatatt gggtaatcgc cacaggggtt ttgcctttta
    13981 cgatatcaac aattctgccg aactcagatt gaaattgctt agaagtcacc tcttcaaatt
    14041 gagggatagt aatcgctgtc atttttaagc tcctaatgtg agtgattttg gatatgttag
    14101 ctatgttttg tgtaaaaatc aatcgagcca attaagataa atttttgtag ttattgtaaa
    14161 ttcaataaca taaaaacttg aacaaacact tgattttcta ttttttatgg cttaatgtag
    14221 tagagcatat tatatgtagg ttctatctcc aggcctgcgg tcaggtatcc atacttgcct
    14281 tgaacaaaag agata
//
LOCUS       DANLXB010000057        14010 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLXB010000057 DANLXB010000000
VERSION     DANLXB010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14010
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..920)
                     /locus_tag="PXD41_001091"
     CDS             complement(<1..920)
                     /locus_tag="PXD41_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6288637.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGIT"
     gene            complement(1117..1524)
                     /locus_tag="PXD41_001092"
     CDS             complement(1117..1524)
                     /locus_tag="PXD41_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL6288638.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            complement(1524..2168)
                     /gene="sspA"
                     /locus_tag="PXD41_001093"
     CDS             complement(1524..2168)
                     /gene="sspA"
                     /locus_tag="PXD41_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL6288639.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            2342..2839
                     /gene="purE"
                     /locus_tag="PXD41_001094"
     CDS             2342..2839
                     /gene="purE"
                     /locus_tag="PXD41_001094"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL6288640.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            2854..3819
                     /locus_tag="PXD41_001095"
     CDS             2854..3819
                     /locus_tag="PXD41_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL6288641.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            3838..4926
                     /gene="purK"
                     /locus_tag="PXD41_001096"
     CDS             3838..4926
                     /gene="purK"
                     /locus_tag="PXD41_001096"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL6288642.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(5147..5557)
                     /locus_tag="PXD41_001097"
     CDS             complement(5147..5557)
                     /locus_tag="PXD41_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288643.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(5560..7578)
                     /gene="uvrB"
                     /locus_tag="PXD41_001098"
     CDS             complement(5560..7578)
                     /gene="uvrB"
                     /locus_tag="PXD41_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL6288644.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            complement(7817..8053)
                     /locus_tag="PXD41_001099"
     CDS             complement(7817..8053)
                     /locus_tag="PXD41_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6288645.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            8216..9061
                     /locus_tag="PXD41_001100"
     CDS             8216..9061
                     /locus_tag="PXD41_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL6288646.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            9072..10268
                     /gene="efeB"
                     /locus_tag="PXD41_001101"
     CDS             9072..10268
                     /gene="efeB"
                     /locus_tag="PXD41_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL6288647.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QLDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            10279..10898
                     /locus_tag="PXD41_001102"
                     /pseudo
     CDS             10279..10898
                     /locus_tag="PXD41_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(10934..11752)
                     /locus_tag="PXD41_001103"
     CDS             complement(10934..11752)
                     /locus_tag="PXD41_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL6288648.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(11764..12363)
                     /locus_tag="PXD41_001104"
     CDS             complement(11764..12363)
                     /locus_tag="PXD41_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL6288649.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            complement(12360..13907)
                     /gene="sbcB"
                     /locus_tag="PXD41_001105"
     CDS             complement(12360..13907)
                     /gene="sbcB"
                     /locus_tag="PXD41_001105"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL6288650.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
BASE COUNT         4102 a         3065 c         2832 g         4011 t
ORIGIN      
        1 atagtaatgc ccaattcttt tgccgtttta gtattaattg aaagctctaa tttgctgact
       61 tcttggattg gaattgtacc tgctttttcc ccttttaata cacgagcagc aactttaccg
      121 gttgccacac caatatcata ttgattaacc gcataagctg ccactgcacc acgttgtact
      181 gtatcacggt cagcagcaat caccggaatt tttgcttcta aagccgcttt atgtaaggct
      241 tcataagccg aaacaactgc attatcttca gaaatataaa tagcctgcac ttttccgttt
      301 aggctgcgag cagcagtgcc aatatcggca ctgcgttgaa cagcaaccgg cactatagta
      361 aagccctgtt tttgagcctc ttgttttaac tcttctaaca caatcgcaga attaacttca
      421 cctgcactat acacataacc aacagctttc aaatccggta ctaatgtttg aattaatttc
      481 acttgtggag ccatcgcttt gtggtctgaa atccccgtca cgttagtgcc acttggctcc
      541 cacgatttta ctaattttgc agcaaccggg tctgtcacgc ctgaaaacac aattgggata
      601 gaacgtgttg cagcaacaac aggttgtgcc gaaggtgtgg tgatcgggat aataatatct
      661 gctttatccc caacaaattt acgcgcaatt tgtgctgctg ttgcagtact accctgtgca
      721 gactgatagt cgattttaat gtttttacca tcaacaaacc cttctcgggc taattcttca
      781 atcacacctt tacgaattga atctaatgca gggtgttcca caatcgctgt aattgctaca
      841 ttttgaattt tatcttgagc taatgccgct acagaaagtg aacttaacaa agtcactaat
      901 aaggttttat ggaatttcat tttctctcct taagatcatt actgtactat cacaacagta
      961 caaacacaaa acaaagataa gcaattttta gtcggagtgc aagtggaatt tgattatttc
     1021 cgtcacaaaa caaacaagcg gttaaatttt gactgatatt tgcaaataat cagaaaaatt
     1081 taaccgcttg taatgtgttt tgatgaaata gatctcttat ttcaccaact ttaaggtaga
     1141 tgttttcttc gccttgattt ttttaggctg ctctactgct ctaactcgag cttgataagc
     1201 ctcttcagtg tagtaggctt cttcttggaa cataatacca tcaccggttt cttgcgcata
     1261 aatcgccacc attgccccaa aaggaatata aatatctctt aacattccct gaaaacgagc
     1321 gctaaagcta atgtattcat cagccacaat atactgcccg atggaacgag gcgaaatatt
     1381 taaaataatc ttcccttctt tgacaaactc taccggcaca tctacgtctg gaaattctgc
     1441 attcactaat aagtaaggcg tgttatcgct atcaataatc cagttatagt aggcattata
     1501 aagataaggt cttaatggtt tcattagtct ttatcgtcca ttaaatgttt tggcgcttcg
     1561 ccgccaacag actggataaa actatcacgt tggaatacac gggtcatata cgcattaatt
     1621 ggttttgccg ttgcaccgct gaatttaacg cctaagattt gcatacgcca taataacggt
     1681 gcaatatagc aatcaaccaa gctgaaatca tcgctcataa aataaggttt agcggcaaaa
     1741 ataggcgcta atgccaatac atcttcttta agctgtgcta acgctttctt gccttccgct
     1801 gattcaggat ctttattcac aatatcaatt tgcgaatacc aatcttgttc aatacgatac
     1861 atatttaaac ggcactgacc acgagaaaca gggtaaaccg gcattaatgg tgggtgaggg
     1921 aaacgctcat ctaaatattc cataataata cgagggttaa acagcactaa ttcacgatca
     1981 accaatgtag gaatattacc gtaaggattc aattctaata aatcttcaga aatactgcct
     2041 agcataacgt tctctatttc ataaggcacc cctttttctg ctaacacaat acgcacttgg
     2101 tggctgtaaa tatcattttt atccgaaaaa agagtcatta ccgaacgttt gtttatacta
     2161 ctcgtcattt atatctccga tgattaaatt tataaaaaat aaaatggttg tcgattatat
     2221 catattttaa ccagcagata acagccctaa aaattgcttt tcacttctta aatagctacg
     2281 caaacgtttg ctttgtatgc tatgattaca ctgttttaca ttagtatcat aaggatttaa
     2341 aatgccaaat aaagctgaaa ttgcgatcgt aatgggatct aagagtgatt gggctacaat
     2401 gtctgaagca acccaaatat tagaccagtt cggtttgagc tatcacgttg aagtcgtctc
     2461 agcacaccgc acaccggaca aactcttttc ttttgctgaa actgcagaga ctaacggcta
     2521 taaagtgatt attgccggag ccggcggtgc agctcacttg cccggaatga tcgctgctaa
     2581 aaccattgtg ccggtgttag gtgtgccggt aaaaagctca atgttaagtg gtgtagatag
     2641 cctctattcg attgtgcaaa tgccgaaagg tattccggtc ggtacgctcg caatcgggcc
     2701 ggcaggtgca gcaaatgcag gcttattagc cgctcaaatt ttagcagcct ttaaccctga
     2761 tattgcagag aaactgcgta ttttccgtca aacccaaact cagatggtat tagataatcc
     2821 tgatcctcgt gttgaataac tattgtataa aagatgtcta aaaaattatt aatcctccac
     2881 actggtggta ctatttcaat gaaagaaggg gaagacggta aggtctcccc ttccaatgaa
     2941 aatcctctct tggctgcctt agaacgttta aaccacccag caaaattggc gcaagaatcg
     3001 ttatttaata ttccctctcc gcatatcaat atcgagcatt ggcaacagtt aaaaatgcgg
     3061 attgaaaagg cagtgaatga ggagaatgtc gatggcgtag taatcaccca cggcacagat
     3121 accttggaag aaacctccta ttttctggat ttagccctca gcgtaaatat accggtagta
     3181 attaccggag caatgcgttc cagtaacgaa ctgggtgctg atggcttaat caatctacaa
     3241 agtgcgattt tagtggcgtt aaatgaagaa agccgagata aaggcgtgtt agtggtgatg
     3301 aatgatgaaa tccacaatgc taaatttgtg accaaaaccc acaccactaa tgtggcgact
     3361 ttccaaaccc caacctttgg gccttgtggc ttagtaacga aagaatctgt catttttttc
     3421 caaaaattga ccacttacga acgttatcca attcaacaag taactaaagc taacgtgcaa
     3481 ctactgaaag catacgccgg aatggatagt tttctgctgg aacaattagc gaaaagcaaa
     3541 tgcgatggtg ttgtgattga ggcattgggt gcaggtaatt taccccctag ttgtctggct
     3601 ggtattgagg ctttagtgaa tgccaatatt ccaattgtaa ttgtttctcg ggcattcaat
     3661 ggtattaccc aagatgtcta tgattatgta ggcggtggaa aacagttaaa gcaaaaaggc
     3721 attattttta ccaaaggctt aagtgggcaa aaagctcgca ttaaacttat ggtcttactc
     3781 agccaaacct tagacaaacc actatcagac tatttctaac ccattgagaa taccacgatg
     3841 caaaaaagtg caatctaccc acctgtgtat gtattaggca acggccagct cgggagaatg
     3901 ctacgctacg ccggagcacc acttgatatt gaagtcaaac cgctggcttt cgatgcccct
     3961 gtgtttgata ttgagccaaa cagcattatt accgcagaaa tcgaacgttg ggcagatacg
     4021 cctttaacgc aattactcgg taaccacccg aattttgtga acctgaatgt ttttgggaag
     4081 ttagccgatc gttttacgca aaaatcacta cttgatgaac tccatcttgc gacttcaaaa
     4141 tggcaactgc tagaaaatgc cgaacattgg caagatattt ttcagcatat tggcgaaaaa
     4201 gtagtggtta aacgccgaac cggaggatat gacggacgtg ggcaatggat tgtaacgcaa
     4261 gactcgattc atcaaattac acctgaatta tttggcgaag tgattgccga aaaatttatc
     4321 ccgtttgagg gggaaatttc cattgttggg gcgagattcc gtgacggctc aacccgtttc
     4381 taccctattt ctcacaattt acaacaaaac ggcattctac gttactccgt ctccgatgtg
     4441 aatttaccga accaagccct ctaccagcag caagccgaac agatgctcgc tacggtaatg
     4501 caaaaattag agtatgtcgg cgtaatggca atggaatgct ttgttgtggg cgacaagcta
     4561 ctcatcaacg agcttgcccc tcgagtgcat aacagcggac actggacaca actcggctgt
     4621 gccattagcc aatttgagtt acatttacgg gcattattag atctacctac gccagcactc
     4681 gaccaaattg ccccaagcgt gatggttaat ttaataggca ttgaacataa caagcagtgg
     4741 ctaagcctcc catttagcca actacattgg tatggcaaag aagtccgagc tggtagaaaa
     4801 gttgggcata tcaacctcac tcacaccgat aaaaacggct taattgaact actggaacaa
     4861 ctcagaccga gcctaacgga agatttccat tcgggattag attgggcaat caataagctc
     4921 aagtaagcgg tcggattttg taactttttt gcaaatctgt ttacccgatg gtgcgagctt
     4981 cctcgctcgt accaaacaag cggtcgactt agtgctaaaa tttgcaaaat aattcaacat
     5041 aatggctact tccggtcatc atcttgatct gaaaacccct cagggtggat atggctatca
     5101 aaaagcattt tcttcctccg agaaaacaga tttcttcaca agaatcttag agctgctctt
     5161 tatttgtttc cttaggcaat aacttcgagc aaatgataat agagagcata gccccaaatc
     5221 ctgcacctga aatcttcagt gatttatcat aaactgccgg ctcaaaataa ataaatccca
     5281 aaatccaaat taaaaagaac cccatataaa tccaaaacac tttatcttca tttttctggg
     5341 tataaccttt ataaacaata accgcactac ttaccatcat cggaataata aaagtcaaaa
     5401 acacattatt gaacagggta ccaaatcgtt caaacggatt actgtactcc cgcataatat
     5461 ggtgggcaat ccagataacc accataaaaa caagttgaga gaaaataaca attttggcaa
     5521 ataagattaa ttttgaaaat aatgaacgag aaatcatatt taaacctcca acaaatacgc
     5581 ctttaaatgc tgcaacttat cccttaccgc agccgctttt tcaaattcca gatctttcgc
     5641 aaaatcacgc atttgttgtt ccagcgtttt aagctctttt tccagttctt tacgggattt
     5701 cggcttgtag tcggttgcag aattttcggc ttttttgacc gcttgtttgc cccgttttgg
     5761 cttgtcggat tgtccgatgt cgagcaattc acccactttt ttgttcaacg cttgtggcgt
     5821 gatgccgtgt tcttcgttgt atttcatctg cttttcacgg cggcgttcgg tctcagtaat
     5881 tgctttttgc attgagttgg taatgcggtc gccgtataaa atcgcttttc cgttgaggtt
     5941 tcgggcggca cgtccgatgg tctgaattaa cgagcgttcg gaacgtaaaa atccctcttt
     6001 atccgcatca agaatggcaa ccagcgacac ttcgggcata tctaagccct cacgcaataa
     6061 gttgatcccc accagcacat caaacattcc cattcgtaaa tcgtggataa tttcgacccg
     6121 ttccaccgtg tcaatgtcgc tatgtagata acgaactcgt acgccatgtt cgtccaaata
     6181 atcggtgaga tcttccgcca tttttttggt gagtgttgtc accagcaccc gttcgtccac
     6241 cgccactcgt ttgtgaattt cagacagtaa atcgtccacc tgcgtagcaa cggggcgaac
     6301 ttcgataatc ggatcgagca agccggttgg acgaactact tgatccacca catcgggatt
     6361 tttctccaat tcatacgccc ccggtgtggc agaaacgtaa atcgtctgtg gtgaaagacg
     6421 ttcaaactct tcaaatctca acgggcggtt atccagtgca gacggcagac ggaaaccgta
     6481 ttgcaccaat gtttcttttc tcgctcggtc gcctcgatac attccgccaa tttgtggcac
     6541 agtaacgtgg ctttcatcaa tcaccaaaat accgtccgcc ggcatataat caaacagggt
     6601 cggaggggct tcgccctctt ttctgcccga gagatagcgt gagtagtttt caatgcccga
     6661 acagtagccc agctcgttca tcatctcaat atcaaactgc gtacgttggg cgatccgctg
     6721 ctcttccagc aatttattct ctttgatgaa ataggtgcga cggtcggcaa gctcgacctt
     6781 aatttgctcg attgcctcca aaatccgttc ccgaggggtc acatagtgag ttttcgggta
     6841 aatggtatag cgaggcacct tgcccaagct atgccctgta agcggatcaa acagcgacag
     6901 attttcgatt tcatcgtcaa acagctctac ccttaacgct acttcatcgc tttcggcagg
     6961 gtaaatatca atcacatcgc cccgcactcg gaaagtcgaa cgttggaacg cctgatcgtt
     7021 gcgagtatat tgcaattcgg caaggcgaga gagaatttca cgctgcccaa tcatcgcccc
     7081 cacttgcaaa tgcaacatca tctgcatata agcgtccaca tcacccaagc cgtaaatggc
     7141 agaaacggac gccactacaa tcgtatctcg gcgttccaaa aaggatttgg ttgcggaaag
     7201 tcgcatttgc tcgatctgct cattgataga ggcatctttc tcgataaagg tatcgcttgc
     7261 cggcacatag gcttcgggct ggtagtaatc atagtaagag acgaaatact ccaccgcatt
     7321 ttccggaaag aacgctttca tctcggcata aagctgggcg gcaagggttt tattcggggc
     7381 aagcaccatc gccgggcgat tgagcttggc aatcacatta gcaatggtaa aggttttccc
     7441 cgagccggtt acgccaagta aggtttgatg tgccaagccg tcatttaagc cttcggtcaa
     7501 tttggcaatc gcacttggtt ggtcgccgga gggcttgaaa ggagaatgga ggataaaggg
     7561 tttgccttgc ttgctcatag aaaatcctgt cttaaaaaat cggtttattt tagcacaagc
     7621 aagcggtcgt ttttatcggg atttttgcaa atttattgta actgcttata ttgatccatt
     7681 cttggatcta acaccctaac aataaagata ccttttggga ttggtttata ataaatagaa
     7741 tgtgagcggt ggtaatgaca gcgtaacaaa gggcgaataa agtaacgcta aatctcgctc
     7801 tgccctaaca gaaagtttat acattacgtt ttgccttgct gataatagat tgaacggttt
     7861 cctcagaaac accgctttct aagccttcat caattaaggc tcttagctga attagttgct
     7921 gttcttgtgc ttccaatatt tttaatgcgg cactgatgac ctcgttggtc gaaccataac
     7981 gcccactttc aaccatttgg ttcacaaatt ggcttaatgg ctcagctaaa gttacgctgg
     8041 ttgttctact cattactatt cctatcttat tgattattga gcagattgta atggctctaa
     8101 tttagataag caagcggtct atttttagca ataatttgca aaacaaaatg tgatttacat
     8161 cacaaaatca gcattatttt ttgcgaataa ttcgcaataa ggatattatg tcgcaatatt
     8221 tttattaaaa ggaaatttct atgcgtttaa ccaaacttgc ttttgcactt ttgcactttc
     8281 tggctttttt gtggctactc aagcggcagc tttagactta actaaggaaa ccgaggctta
     8341 taaacaattt gtggtagaac agattgacca actggttacc gatacggaaa aatttgtcgg
     8401 ctacttaaac aaaggcgatg tgcaaaaagc gaagaaaatt tacccgcttg caagaatgta
     8461 ttttgaacgt tctgaaccga ttgcagaaag ttttggcgat ttagaccctc gtattgatgc
     8521 ccgtctggca gatttagccg aagaaggtaa aaccgagaaa gattggtcag gtttccataa
     8581 aatcgagaaa gtattgtggc agaaaaacac cactaaaggc acaaaagcaa cggcagaaca
     8641 attattaaaa gatgtaaaag agctgcgtgc gaaaattccc actgcagaag ttacccctga
     8701 gccgatgatt accggtgcgg tagatttatt aaacgaagtt tctactacta aagtaaccgg
     8761 tgaagaagaa attttctcta aaaccgacct ttacgatttt aaagccaata ttgaaggtgc
     8821 agaaaaaatc tatgagattt ttaaaacgca attagagcaa attgatgcca aactctcaac
     8881 agaaatcggc tctcgttttg cggctgtcaa tgcgctgtta gcaaaacaca ataaatctaa
     8941 aaccggttat gattatgtgc cttataacaa actgtcaaaa gcggatatta aagcgttagc
     9001 agaggctgta aaccaattag gcgagccgtt agctcaactt ggcgtacttt taaataaata
     9061 gtggagcaaa aatgatggca gaaaccactt ctcgccgtga ttttttaaaa cataccgcat
     9121 tagtaggagc aggcttattg tctgctcctg ctttcgcttt ggaatcacga caaatatctg
     9181 aaaaatctca aaatcaatac gacttttacg gcaaacatca agctggtatt gttagccctg
     9241 cacaaaaaca tatctacttt ttagtgctgg atttagacac cactgacatt gccaaagtaa
     9301 aaacattgtt tcaaaactgg acggaatata gccgtaacct cacgcttggc aaaaatgtga
     9361 aaccttatag tgctaatgct tatgttccac cggcggatac cggtgaggca gatagccttt
     9421 cggcacagaa tctcactctt acttttggcg tcagtgccaa tttctttaca aagctcggca
     9481 ttgaaaaaca taagccgaaa gaactgaatg atttaccgca tttccctcgt gatcaactac
     9541 aagcagaata caccggtggc gatatttgca ttcaagcctg tgcagacgat ccgcaagtgg
     9601 ctttccacgc tgtgcgtaat ttggtgcgtg ttgcccgtgg tgaaatcaaa atgaaatggt
     9661 cgcaaatggg gtttaactcc tttgccaatc aagacacacc tcgtaactta ttcggtttta
     9721 aagacggcac tgccaacgca gaaagtttaa aagatcagga aaatacggta tgggtgcaac
     9781 aagagggctg gctcaaaggc ggttcttatt tagccgttcg ccgtgttaaa atgttcttgg
     9841 aaacttggga tcgcacccat ctccaatccc aagaagaaac cttcggtcgt caccgtgatt
     9901 ccggagccgg aatcgggcat cagcacgaat ttgataaatt agatttagcc aaaaaagacg
     9961 aaaaaggcaa tgcagtaatt ccggaagttt cacacgctca tcttgccaat aaaacggggc
    10021 tgaaaatcct acgccgttca ttctcctatt caagcggtat tgatgataaa gggcaacttg
    10081 attcagggtt gttgtttgtc tctttccaac aaagtccgga gcaatttatc aaaatccaga
    10141 acgctctcgg caatgtggat aaaatgaatg aatacatcac tcatatcggc agtggtttat
    10201 ttgcctgttt tgccggtgtg aaagatgaaa atgactacct tggcaaagcg ttgtttgatt
    10261 taatttaggg aaaaggaaat gaaattaaaa gcattagtgc taattccgtt actcttttcg
    10321 agtacaggat tgcttgccaa agtgaatgtc agccccttat ttgttcagct ttccgatgca
    10381 atggcagaga gtaaaaaagg ggaatttgca aaatccagcc aaaatttgac cgctttacag
    10441 cacgattttg agcagattag ccagcacgat tccctcgccg gagttgaagt acagaccgct
    10501 ctgaaaaaag cgattgaaac acccaatgct gaaaacttag agagcctttc taaaaactct
    10561 atgcgtttga aaaagaacaa aaccctagcg gttatgctga aaaacatcag gattttgtgg
    10621 caaaaatgac gccgctttat gcagaacttg ctcaaaccgt gccaactcaa gaaatcgcca
    10681 aaatcaaatg ggcggcttat cagtttggta agaattgggt aaaacaggaa aaagcagtac
    10741 gggaaatcag tcttccccat tatggcaaat ttgagcgtat tcttggttta atgcgaatta
    10801 atctgaacgc tgaaaagccg gatatggcaa aaatcagtga actggtttcc gaactaggtg
    10861 tggtaatggc agactttaag caagttaaag tgaaatagta aaaaatcggg gcaaattatt
    10921 tgccccgata acactaaaat aacgtccaaa tcggtttaca ttcttggggt aattccaaac
    10981 ttttaccgag ctcaatccag ccagttgggt agtggaaatc agaaccgacc gagccatata
    11041 aatcaaactc ttttgcccaa cgggcaagta attgccgttg atcaggtgtt tgtccgcagc
    11101 ctgatacttc aatgccatcg cctccggctt gtttgaaatc tgcgattaaa cggcgaatcc
    11161 aacgagcagt cattttatag cgtagcgggt gagcaatcga aatcacaccg cctgaggtgt
    11221 gggtaacatt caccgcgtct tctaaactac tccatctcgg tttcacatag gcaggtttcc
    11281 ccattcccag ataacgctta aaggcgtgtt caatattgcg gacatagcct tgttcataca
    11341 aaaaacgccc ataatgtgcc cgagttactt cccctgttgc caacgctttt gccccctcat
    11401 aggcatttgc aatcccgact tttgctaatt tttcaccaat ttcgaccgct ctctcttccc
    11461 ttaattgggc ttggttatcc aaaaacttca ccagctcctc gttgttttca tcaatattca
    11521 acgccgcaag atgaatactt ttttcttgcc ataaaatcga aatttccacc ccagagataa
    11581 gctcaagcgg ttgattttgg gcaaaatttt tcgcttcttg aatgcccgaa atcgtatcgt
    11641 gatcagttaa agctagcatt gttacccctt gctctaccgc acgttgtacc aattcagtgg
    11701 gagaaagtac gccatcagag gcggtactgt gggcgtgtaa atcatatttc attttattta
    11761 tccttaaatt aagccggcag tcctgaaaaa ttggcgatag gcttcggttt tgttggctaa
    11821 gctgagtgga taagccctcg acgtcgaagg caggcgatat aaataaagtt ctcttgtggc
    11881 ggaataagga tagaccaccc attcgttggt tttcggagct ttgtgttttt ccggcaataa
    11941 accgagcaac gtatcggttg ccaaaccacc tgtggtaaat agccatttca gtttgggtaa
    12001 tttgagcaac agttcgtcca tatcgatagg atcaacaatt tttaaatctt tatctgaagc
    12061 gtttcctttt aaacgaatcg ctgtttttgc cgaagaacag agcgcaacgc ccttttctcg
    12121 caaaaacgcc tcaatccgaa tcggatcaaa gcgtttttct tcaccaactc gaaaatagtt
    12181 agggtcagca taaaaaatat tgcccataat tcgccacata tcattttgaa aattcgggta
    12241 atgaaattcc atacaacgct tttccgatgt aggtggaaaa gtgccgacca ttaccaccgt
    12301 tgcttgttca ggtaaaatag ggtcaaacgg gtgctgttct agcggtaaat tatccattgt
    12361 catttaatca actcttttaa catcttgagc ttttcggttt tatctagggg ctgttccgct
    12421 actctgttaa gctcgctcag caatttttca tcttttgcaa cattttgacg ataaatgacc
    12481 gcttgttgtt gcgaaatctg ctcggcgtaa gcggtcaaat tttctaataa ttttaccttt
    12541 tccgggttgt cgtgatgttg ttggaacaag tcgtcaatcg attgggcgaa ctgcgctgct
    12601 tttgcctcaa tttgctggtt gcaatgtttc tgccatttga tctgctcggc tcgactgagt
    12661 gtttgtggat agtgccttgc tcggtaatgg aatagtaacg cctctactcg agggtcttca
    12721 aatttcaagc cgtggttggc taaatcttca ggcggtagcg tgcgtaaaat cgccatatta
    12781 tttttatccg caggcgagaa aaagccgtca tacaaagtgg tttctacatt ggtcgaaggc
    12841 tcaaacgtgc gttcttcatt aaaaatttca atcacttttt cccgaatcag cgatttctgt
    12901 gcttttaaag ttttcaaatt ttccaaacat aaagctctgt ctatgcctaa acgttctgca
    12961 ttttcaggca gtaaggtttt tgccggtgct aaaatcgggc atttattaat atgcactaat
    13021 tttaacggca caggtaactc attttcggct aattcatctc gtttggtgta taaacgctga
    13081 cgtaaaacct ctgcattttc agtcaataag ccattcatat cgcccgataa atcacacaca
    13141 attacggcat tttgattagt tgagtgccaa gccagtggca caacccaagc ggtatttcct
    13201 cgatagttgc ccagcatacc ggaaacgtgc acaagcggtg tcatttcacc agtgtcaatt
    13261 aacttctcta cttctttttt actgcgtaaa ttaaagaaaa aatcgaacaa ctttggctgt
    13321 ttttgcttaa ttaattttgc cattgcgatg gtggcataca catcagacat cgcatcgtgt
    13381 gcattttcat gggcaatgcc attggctttg gtgaggtttt ccaatttaaa acttggcata
    13441 ccggtttcat ctgttggcca ttcaatacca tcaggtctta acgcataaca ggcacggact
    13501 aaatctaaca agtcccaacg agaatttccg tttttccagc tatattcgta aggatcgtaa
    13561 aaattgcgga agaaggtata acgggtcatc tcatcatcat aacgaatatt gttataaccg
    13621 atagtacaag tattcgctcg gctaaattca gcgtgaattc gggctgcaaa ttccggctca
    13681 gatacacctt cagcgttaca ttgttgcggt gtaatcccgg taaccatcac cgcttcgggg
    13741 ctgggtaaat aatccggcgt ttgcttacaa aaaaacatta ccggttcacc gataatatta
    13801 aaatccgcat cggttcgaat accggcaaat tgtgccggac gatctaacgc cggactcacg
    13861 ccgaaacttt cataatcgta aaagaaaaaa gagaatttat cgctcattcg ttcaatttgt
    13921 tagaaaaaat tgggctgatt gtagcacagt aaggcagaaa ggagggaata caagcggtca
    13981 atttccgtta gaaatttgca aatgctaaaa
//
LOCUS       DANLXB010000058        14007 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLXB010000058 DANLXB010000000
VERSION     DANLXB010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14007
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(48..767)
                     /locus_tag="PXD41_001106"
     CDS             complement(48..767)
                     /locus_tag="PXD41_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL6288651.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(825..1562)
                     /gene="tsaA"
                     /locus_tag="PXD41_001107"
     CDS             complement(825..1562)
                     /gene="tsaA"
                     /locus_tag="PXD41_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL6288652.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            1742..2650
                     /locus_tag="PXD41_001108"
     CDS             1742..2650
                     /locus_tag="PXD41_001108"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL6288653.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(2726..3712)
                     /locus_tag="PXD41_001109"
     CDS             complement(2726..3712)
                     /locus_tag="PXD41_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL6288654.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(3806..5677)
                     /gene="rpoD"
                     /locus_tag="PXD41_001110"
     CDS             complement(3806..5677)
                     /gene="rpoD"
                     /locus_tag="PXD41_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL6288655.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(5936..7684)
                     /gene="dnaG"
                     /locus_tag="PXD41_001111"
     CDS             complement(5936..7684)
                     /gene="dnaG"
                     /locus_tag="PXD41_001111"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL6288656.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(7838..8053)
                     /gene="rpsU"
                     /locus_tag="PXD41_001112"
     CDS             complement(7838..8053)
                     /gene="rpsU"
                     /locus_tag="PXD41_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL6288657.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(8201..8797)
                     /locus_tag="PXD41_001113"
     CDS             complement(8201..8797)
                     /locus_tag="PXD41_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL6288658.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            8939..10195
                     /locus_tag="PXD41_001114"
     CDS             8939..10195
                     /locus_tag="PXD41_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL6288659.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQSGNI
                     AILLSLFSIAIAFYWLSKKRIKTGIAYLVFAMFGLFASILTGARGGWLAFIPICFFIL
                     FLNLRQLNKKAIFLILLALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSL
                     GARFDMWENALIGIREKPLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAF
                     VKRGVVGFMALMAILIIPFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLA
                     HNSGSLFYFFVLILLYHLVKQNEEII"
     gene            complement(10297..11304)
                     /gene="rfbB"
                     /locus_tag="PXD41_001115"
     CDS             complement(10297..11304)
                     /gene="rfbB"
                     /locus_tag="PXD41_001115"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL6288660.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(11301..11882)
                     /locus_tag="PXD41_001116"
     CDS             complement(11301..11882)
                     /locus_tag="PXD41_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL6288661.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
     gene            complement(11903..13174)
                     /locus_tag="PXD41_001117"
     CDS             complement(11903..13174)
                     /locus_tag="PXD41_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL6288662.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(13178..13986)
                     /locus_tag="PXD41_001118"
                     /pseudo
     CDS             complement(13178..13986)
                     /locus_tag="PXD41_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT         4075 a         2997 c         2485 g         4450 t
ORIGIN      
        1 tcctccaatt aaagtaaaaa tacaactcta tacaaatcta tacatttcta ttcaaattcc
       61 acacttcctg aagcggtagc tgaaattgtg gttttacctg cttctaacgg gatttcatcc
      121 atagatttgc tttgtgccat tgatgaaact gcatacattg ctctgtgttc ataatatggt
      181 ctaccaccat catttggagt ttgaatattg atattaacta gcttatatgt tttcgcccct
      241 aaggcttttt gaatcacatc ggctttatgc tgaaatttgc tgataatttc cagcgtcatt
      301 tcatcttcaa gggacgccat tttctctggc gatacactaa aatcaatgta acgaatcgcc
      361 acatctttac ctaaattttc caacaccgct gccattgcat caaaatcttt gcttttcaac
      421 tgaatgctac cagaggtatc ccaaccatca atattccctt tgttgttata attaacgtga
      481 ttagtcacac cttcagcttg tacttcaatc gatggatgtt tttttgcctc agccaataca
      541 cgattcaggt tttcagatac aaattttttc agctccggca aggagttacc tgatttttgg
      601 ctatacacac ttgcctgcat cacgtccttt tccaccgtgc gagagacttc ggttgagaaa
      661 ttaaaagaag ccggtttatc tttatgttcc acggtatgag tttccgctga agttaccgct
      721 gttgcgactg caagcggtag aatggtaaga aaatttttca atttcataat cagtccttaa
      781 aagggttaaa aatcatttct tagatctcac ttgcgtagga aagttcattc aatcgaaagc
      841 acaatcgcct gtgtatcatt ttcaatttgc cagcgaatat tgtagccggc aaggttcata
      901 ccataaactc gctcactagg tttcccttgt tgatacgccg ggcgagggtc ttgggcgatg
      961 acatcggcaa gaaaactaag cggctgttcg atgccaaatt ttgcaaaatt tcggcaaaat
     1021 tcgacagctt gttttgcctc ctcgctaaaa cgcaccgcta atcttgcttg tggtttttgc
     1081 tgagcaaaac cggaaaccgc ttgcggctcg ctatctgcaa atgcaatgta aggcttgatg
     1141 tcaaaaattg gtgtgccgtt aactaaatcc acgctgccta atttcaaata aacttcactc
     1201 ccccccgcca ctaccgcttc taacttcact ttcgataagc caagcggatt cggacgatgg
     1261 gtggcacggc tggcaaagac cccgacccgt tcgttcccgc ccaagcgagg cggtctgacg
     1321 gtggcgtgcc actctctttc gggaatgtga tggaattgga aaatcaacca aatatgacta
     1381 aatttctcca agcctctgac tgcatcgggg gtattgtaag gcggaattaa acgtagaatg
     1441 cctttcccct ccgctaccaa attcggctgg cgaggcacgg aaaatttttc atcatagggg
     1501 ctttccacaa aaccgatagg gtttaattga atcggggtta gttgatttga ggtagagttc
     1561 attacgcttt tttctgttaa aataatataa aatattggac ataatgatat gaaattgagg
     1621 atggtgcaag cgtccacgct tgtaccaatt cgttttacca tttaacacaa gagtggacgc
     1681 ttgcactatc gcttaaatcc ttaacatcat tgtaaatgaa attacgctaa gattattctc
     1741 tatgaacaaa aattctctct tttcgatttg gtttaccacc gctcgcccga aaactttacc
     1801 gctggcgtta gcttcaatta ttgtgggttc agcacttgct cattgggcag ggaaatttga
     1861 tgttgttacc accttactcg catttatcac caccattttg ttgcagatcc tgtctaactt
     1921 cgccaatgat tacggcgacc acgtcaaagg ctctgacacc aaagaacgaa tcggaccgct
     1981 acgggcgatt caacacggtg ttattggcgg tgaacaactt aagaaagccg tgattatctt
     2041 aagcctactc tcgtttgttt ccggtgttgc cttaagtgcc tatgcttttg aaacagtgca
     2101 ggatctgttt ttctttatcg ggcttggcat cgtctcaatt attgccgcca ttacttacac
     2161 cgtcggcaaa aaagcctacg gctatttggg gctgggcgat ctatttgtgc tgattttctt
     2221 tggctttgta gcggtaatcg gcgtgttcta cttgcaggct catagcctac ctataatgat
     2281 tctgctccct gctttcggtt gcggattgct gtctgtagca gtgttaaata tcaataactt
     2341 gcgtgatatt aaccaagacc gacaagctgg gaaaaacact ctcattgtac gaatcggtag
     2401 ccaaaacggg cgaaaatacc acgttgcatt gttagtgcta gcggtcattt cttatctgat
     2461 ttttgcaatt tctgaatttg aacattggta tagcttcatt tttttgctgt ctgtaccgtt
     2521 actggcaaaa cacgctcgtt ttgtctatca gcataaagac ccaaaagaac tctacccaat
     2581 tctagggcaa atggcagggc tggcgttgct cactaatcta ttatttagtt tgggcattgt
     2641 gttagggtaa gttgcaaaat tttaacaaaa ctaaaccgct tgtaataaag gattacaagc
     2701 ggttgttttt tatctaaatt tacaattagt tatctagttc ttcaaagaat ccatcttttt
     2761 cgccacgttg atactccgaa ttgagcaact tattaataat gtaccaatcc gcttcaacct
     2821 ctatatcgcc ttctgcataa gcacctaatt cgtatggcgg ataaacaaaa gcaatgccgt
     2881 gaggggtaaa gtagaattgg tcagaaatac ggaactcttt tttatcagca aatccattat
     2941 agttgccatt ttcatccaca cgcacgctac tgtaattttc ccaaagaatg tctttcagtt
     3001 gaacttgatt ttttgggctg attaaatcat ttaagccaat gattgctttt ttagctaaat
     3061 ctacattgat atattgcgta tagtgcatac cgtgagcccc acccatatag gtgtaatgca
     3121 tcatagtgaa tgtagcaata ttattgcgtt gcccgataaa agcactggaa atatgatcat
     3181 catagccaat agctggctcg gttttcacac tttctaccaa cccttgataa accgcttcac
     3241 gatgcttttt aaactcttct tcggttggat ttttcagctt tctgccttgt tcttcattgt
     3301 aatcataggc ctgattaatc aaaagctggt taagccaatc aaaattggtt tttggtagag
     3361 acacaaacgc acttactgta ctttcttcta ttgcaaattc ttgtttcgga tcaacttggt
     3421 gcttaatcac ctctttctta tcaaagattt tcacaatttc aacatttaac gctgtgtttt
     3481 gctgagcgtt ctctaactct gattttaatt tttcattttc tgctttcacc cctgaaagtt
     3541 ctgcaacttc agcctctttt tttgctaaat cagcctgagc attttttaat tctgtgccta
     3601 actgaacaat ttgtttttcg gcttctaata ccgtttgggt cattttgccg tcttcacaag
     3661 ctgaaatcag aaatactgag ccaattaaaa gtgctaatag tgattttttc atctctccct
     3721 cttttgtaaa aaatacggta aatatcaccg cttgttatac agattaaaac aaaatcccct
     3781 ataccatcag gcatagggga aatgattagt cgtctaagaa actgcgtaag gtttccgaac
     3841 ggctcgggtg gcgaagtttg cgcagtgctt tcgcctcaat ttggcggata cgttcacgag
     3901 ttacgtcaaa ttgtttacca acttcttcga gtgtgtggtc tgtgttcata tcaataccaa
     3961 aacgcatacg caacactttc gcttcacgcg gggttaagcc ctctaacact tcgttcgttg
     4021 ccatacgcag gctctccgca gtggcggaat ccaatggtaa ttcaaggctt tcgtcttgaa
     4081 tgaaatcacc taaatgtgaa tcgtcatcgt caccgattgg tgtttccatt gaaatcggct
     4141 ctttggcaat tttcaatact ttgcggattt tatcttccgg cattcccata cgttctgcca
     4201 gttcttccgg cgttgcctca cgccccattt cttgtaaaca ttggcgtgaa atacggttga
     4261 gtttgttgat agtttcaatc atatgcaccg gaatacgaat tgtacgggct tggtcagcaa
     4321 tcgaacgggt aatcgcttga cgaatccacc aagttgcata agtcgagaat ttataaccac
     4381 ggcggtattc aaatttatcc accgctttca ttaaaccgat gtttccttct tggattaaat
     4441 ctaagaactg caagccacgg ttagtgtatt ttttcgcaat cgaaatcacc aaacgtaagt
     4501 tagcttccac catctctttt ttcgcacggc gggcttttaa ctcaccattg gaaatacgcc
     4561 cgccaatttc acgaatttga gcaatggtta agcctgatgt ttgctctaaa ttctgtaagt
     4621 tagcaatatt gacacggata ttatccacat aattagctaa tttcggtgct gcatttttct
     4681 tggcattaat cgctttttca atccacgctt cgcttaattc gtgcccttgg aatgctttca
     4741 agaaatccgc ttttttcatg ccggcatatt ccactgcata gcgttgaatt tgacgttctt
     4801 cagtgcgaac ctgcttcatc agtttttgca tagaagcaac caataagtca aattgcttcg
     4861 gcaccaaacg gaattcacgg aaaatatgag ataaaatttc aatttgctct ttcgattttt
     4921 tactggttcg cccgtgtttt tgaatgacca ataacacttt ttcatgttgg ctgcgtaggg
     4981 cttcaaattt ttcacgggca agttccgggt caattgagct gtcatcactg ctgtctgaac
     5041 tgctatcacc gttttcatct tcgttttcgt catctacatc aggcacatca gaagattctt
     5101 catcttcacc taaagcagcc tcaatatcct ctaacggtgc ttcttctaaa atattaggat
     5161 cgacaaatgc tgtcactaaa tcagaaaggc gcatttcacc ggtttcgact tgagcatagc
     5221 aggctaacag gccacttaag gcttccggat attccgcaat cgcacattga acttcgttaa
     5281 tcccttcttc aatgcgttta gcgatatcaa tctcaccttc acgggttaaa agctcaactg
     5341 tccccatctc acgcatatac atacgcacag ggtcagtagt tctacctaac tctgattcta
     5401 cggttgaaag cactttggtg gcttcttcta ccacatcttc atcggcgata ttttcagcga
     5461 gtagtaaatc atccgcatca ggggcagcct ctaaaacttg gatacccata tcgttgatca
     5521 tctgaataat atcttcgatc tgctccgcat ccaccaactc ttccggtaag tggtcgtgca
     5581 cttcagaaag cgttaaatat ccctgttcac gcccttgact gatcagaagt tctaattgag
     5641 attgctgttc taattgttga tctgcttggt tttccatagt ctatccgttt attatgcgag
     5701 caaaaatagt agtggattat accactaaat ttggttcgac ttcataaatt cacaaaaaaa
     5761 ttctattttt ctaatttaca cattactttg atgcttatga gaacagagag gtgtagcaag
     5821 agagataaat aactttcttt ttagatagaa ttaattattt tcttcgttca tcacttctgc
     5881 caaatctccc ctaacccctc tttgctaaag aggggaatta ttcgagctta aaattctact
     5941 gaaacatcaa aagagcatac tcttttttct catcatcggt taagcccacg gttcggtctt
     6001 tggcaattag ctcttctttg cgtaattcca ctaatttggc gtagagaaaa tcgagagtgt
     6061 caataaatgt tcgttcgata ttttcgggta actctaaatg atcccaattt gcgagggctt
     6121 caacaatctt atattgggga tcttcccgat aatgttcaag tagcccgccc atactgatac
     6181 ctgcattttg ctgacaagtt gcgacaatat cggttaataa tgtaaagcca ggatctttca
     6241 aggaggctaa agcacttaca tcgggtacga atttcacaaa atacggattt tgaatcaata
     6301 acgcaatcaa cagccgcatt ggcgtacgtt tcattttgac cgcttgatgt aaaggcttct
     6361 ctgccgcttt tttcgtcggt aacagagctt ctatctgcgt tgggtctaaa atgcctaatt
     6421 tctgtcctaa aatattgcgt aaatacactc gcagcatctc gcccggaata cgattaatta
     6481 acggcacagc taaagcagcg agcttggatt ttccctcttt tgaagagaga tccacatccg
     6541 ccagcaaact gtcaaataag aaatcgctta atggcttggc attctgtgcc acgtactgct
     6601 caaatccttc tttaccttga gaacgaacaa aggtgtccgg gtcttcgcca tcgggcaaga
     6661 aaataaattt cagttggcga ccgtcttgca aataaggcaa cgcattttct aacgcccgcc
     6721 aagctgcatc tcgaccggct ctatcgccat cataacaaca gacaatttgc tcggtgcaac
     6781 gaaacatttg ctgaatttgt tcaccggtag ttgccgtgcc taaagaggcg actgcattgt
     6841 ccacgccgaa ttgggcaagg gcgaccacgt ccatatagcc ttccaccacg aacagataat
     6901 ccggcgtttc attgactttc agtgcttgat acaagccata taactcactg cctttatgat
     6961 aaatcaccgt ttcgggcgag ttcatatatt tcgccccttg ctcatcattc ggcaacaccc
     7021 gcccaccaaa ggcaattacc cgtccacgct tatctcgaat cggtaacatt acccgattgc
     7081 gaaatttatc gtaaattcga ccgctatcat ttttggttaa aacgcccgta tcgagcaatt
     7141 tctgaatatc ttcttgtgat tgcccaaaag tgcgtagggc tgcatcaaag gcattcggag
     7201 caaaaccaat ttcaaagcgt tcgataatct cttcagacaa acctcgttgc tgtaaatagc
     7261 tttgtggctc aatctggtgc gataaattct gctggtagaa cttcgccacc gcttccatca
     7321 attcataaag attacgctta gttttaaaat tagcttgagg cttgccgtca cgttgaatca
     7381 cattctctct cggtacttcc agcccgtgca tagctgccag ttcttcaatc gcttccggaa
     7441 attcgagttt gtcataatcc atcaaaaagg tgatgacatt gccgtgtacg ccacagccga
     7501 aacaatggta aaactgtttt gattggctta ccgaaaagga aggggttttc tcgtgatgaa
     7561 aaggacagca ggcttgataa tctcgcccag cctttttgag tttgacccga ctgttgatga
     7621 cctcaacaat atcggtgcga gcgataagat catcaataaa tgaacgtgga attgtgcctt
     7681 tcattgattt cctcctgctc tttgaatgat acaagcggag caattttgca aattttttgc
     7741 aaaaaacaac cgcttgaaat agaaacgtta aaaacaccaa aaccgtgagc ctaacggaat
     7801 cacggtttcg atatagtttg ctaaccagcc taactaatta gtataaacgt gtgttacgtg
     7861 cgttctcacg gaaattacgt ttagcgtgac gtttagcaag tgatgctttt tcacgtttac
     7921 gaattgtagt tggtttttcg tagaattcac gagcacgaac ttcagctaag atacccgctt
     7981 tttcgcaaga gcgtttgaaa cgacgtaatg ctacgtcaaa tgattcattt tcacgaactt
     8041 taattactgg catatgccat cacctcagaa aaatatgatt aaattaaacc gcacacaatt
     8101 ttggcggcat agaacaaaaa aggtagtgca ttctacctta agcactcaca taagtaaagt
     8161 agtattgtgg cataaaaccg ccgtattatg ttgcattttt ctacagttcg aataatttct
     8221 cggtcgaaaa acttaatgcc ggaaagacca ccgaagttgc cggttcatct tctgccaccg
     8281 gctgaatacc gatatattta ccgttttcca acacaaaaat ctgaatagtg cgggtttcgg
     8341 gagaaacaat ccaatactct ttcacccctt gttcctggta aagctcgtat ttatctttca
     8401 tctccctttt ggtattaccc ggagaaagga tttccaccac taaatccggt gcccctacac
     8461 agcctctttc atctaactta ctgacatcac aaattacaca aagatcaggc tgcactacag
     8521 ttttgacttt tccgttttca tcgggaaacc gaacgtcaaa aggcgcagaa taaatctggc
     8581 attggtgatt gtcaaaaacc tctaaaaatt ttgctgtcat cttcatagaa attcgctgat
     8641 gaaaacgagt aggagccgga gacatcgcca caattttccc tttgataatc tcaacccgct
     8701 ctttaaattt ccatagcaaa taatcagcgt aactgtaact tttttgtaag tccagttgat
     8761 ttaagctggt aatttcgttc attggtaata agctcatacc gcctccttta tcagaaatat
     8821 aaagatatta tgccgaataa tccctcaaat tcaacaaaac tttcgctaaa aagagataga
     8881 taacctttat acccttagta taaaatgaca gcaattttca ttgttttagg atatgtcgat
     8941 gcaccttaac ttcaaaaaaa tagacaactc acatattgct cttttctata atgtactagt
     9001 cgccacattt tttgtcactg ttttaacctt taagaaaggt tatagttatg tgccaatggc
     9061 attaggtatt atcgctacac ttagtttctt attttatcgt ttcaaattaa aacaaaagtg
     9121 gttacttgat aaagaggata aattttttat tttctcgctt attggctatt ttctaacgtt
     9181 tgcaatgtct gctattttta atggcgatgg cattcgtgaa attgataatc ctatccagat
     9241 tttattgctt atccctttaa tcatcctctt tagactttac ccgattaaaa aagaaactgt
     9301 attgcacttt ataccgattg gagcgttggt agctggttgt atagcaatat atcagaggtt
     9361 tatattaaat cttaaatttc ctttccctga aataatgcgt attcaatcgg ggaacatagc
     9421 aatattatta tcactattta gtatagcaat tgccttttat tggctttcaa aaaaaagaat
     9481 taaaactggc attgcctacc tggtttttgc catgtttggg ttatttgcca gtattctaac
     9541 aggagcaaga ggcggctggc ttgcattcat tcccatttgc ttttttatcc tatttttaaa
     9601 tttaagacag ctaaataaga aagctatttt cctgattcta ttagcactta tatcttcact
     9661 ctcatttttt atctccaaac cagaatttgg catacaaaaa cgatataatg cagctaagaa
     9721 tgatattatc gtatttttag aaaaaggaaa tagacattca tctctgggag ctcgttttga
     9781 tatgtgggaa aatgcgctta tcggaatccg tgaaaaaccg ctattaggac acggtagcac
     9841 aggctatgaa acattcaaaa agaaacagat tgaaacaaaa caaatggcaa aaacaacgct
     9901 taggtttaat agcttacaca accaatacct agaagccttt gtgaaaagag gtgtagttgg
     9961 ttttatggcg ctaatggcta ttttaattat tccatttgtt atttttgcca aacgattaaa
    10021 ggcaaaaaat agagaggtaa aatgtatggc gatattaggc attgtacata ttatttcgca
    10081 ttcattcttt ttcctaagcc aatcattttt agcccataat tcaggctcat tattctattt
    10141 ctttgtgtta attttactct accatttagt caaacagaac gaagagataa tatgataaaa
    10201 caatagaaga aagttgggaa tataaccgag gtggtaactt catcttctac cacaggataa
    10261 atgtcgggat atttcctctt tttctgcttc ttactactaa ttccgattag ccaaatacca
    10321 ttccactgtt ttacgcaagc cactttcaaa agtttctttc ggtttccagt cgagttcctt
    10381 ttcgattttt gaagtatcaa ttgcatagcg gaaatcgtgg ccagggcgat cttgcacata
    10441 agtaattaaa tcagcatatt gtcctacaac aagcgggtta tttggcacca tttcttgcaa
    10501 aatagaacag atagaacgaa ccacttcgat attggttttt tcattatgcc cgccaatatt
    10561 gtaggtttct ccgatttgcc ctttttgcaa caccaaatag agggcacgaa tatgatcttc
    10621 cacaaacagc caatctctga cctgcaagcc gttgccgtaa acaggtaggg atttaccttc
    10681 taaggcattt aaaatcatta acggaataag tttttcggga tattggtatg ccccataatt
    10741 attggaacag ttggtgatga cagtcggtaa accgtaggtg cgatgccaag cccgagccag
    10801 atgatcgctg gcagctttag atgccgaata ggggctactt ggattataag gggttttctc
    10861 ggtaaataat tcctcgcttt tggctaaatc accatagacc tcgtcggtcg agatatgtag
    10921 aaagcgaaac gccgatttcc ttggctcagg taacgtgtcc caataggctc tcgctgcctc
    10981 taataaagta taagtgccga caatattggt ttgaataaaa tctgctgccc cagaaataga
    11041 gcgatcaaca tggctttccg ctgctaagtg cattaccaca tcaggctgat atttgccaaa
    11101 aatctcagaa atttgaccgc ttgcacaaat atctgctttt tcaaaatggt agcgttcgtg
    11161 atgtgcgaca ctctccaatg aggctaaatt tcccgcatag gtgagcttat ccacattgat
    11221 aactgtgtgt ggagtatgtt caatcagata gcgaactaat gcagatccga taaaaccggc
    11281 tccgccagtg atgaggatga tcataaaggt gaatatgaaa tttgattcac gaaatttcgt
    11341 ttgtatttaa tatggctttg aatattcttt tcagcgtctt ttttatccca aatttgcaat
    11401 tcccaaggat aataaaagtt acttgaattc ttaaaataaa tatgaatacc cacatattca
    11461 tctttatctc tcaaatacca attttttagt ccatattttt cttgccaata atctaatgac
    11521 tccattactt gctgaatcac ttcactagaa acaataatac gagctccaaa aatatcgttg
    11581 agaatgctat ttactggata accttcacta cgctgtttaa aacgctcgat tttatctaaa
    11641 atcgattctg aggtttttac tcggtaaaaa taagaaattc cctctaaatc tgcacgatat
    11701 aaataatcat taatagattc gtgtaaatta agacgataag ctaaaatatg tggcgtaggc
    11761 actttggcaa aagtatgctt aagattcact ttttcaatct tacctgtttc aaagtagtct
    11821 ttcgaaaaag ctaagtgcaa cttgttgatt tcatcaatga gtttttctat tttctcaagc
    11881 atgctattca ctctctaatt tattatcttg ccccaaatcc agttagcatt gttttcaatg
    11941 ttttaaaaat aattaaaata tcaagccata aagaaaaatg cttaatatag tagaagtcat
    12001 gttctacttt tacttttgta tcatcaacat ctgccgcata accttggacg acctgagccc
    12061 aaccggaaat acccggttta acgatatggc gataattata gaatggaatt tcctcttcaa
    12121 atttatctac aaaggctgtc tgttctgggc gaggaccaat taagctcata tcacctttta
    12181 atacattaaa aaactgaggt agctcatcaa tacgagtttt acggataaat ttcccaatac
    12241 gagttaccct catatccgca ctcgaagcaa actgtgcatc atctttttcg gagtctttac
    12301 acatactacg aaatttataa atattaaact cctttccacc ttgcccaacg cgtttttgaa
    12361 taaacattgc tccaccttca ctttctaagc gaatagcaat agcggtgatt gtcataatag
    12421 gtaaagtaat gggaaacgta gcaacaatca atgcaatatc aatgatacgc ttcactaatg
    12481 agtaaattgg agaaggaagt aatgaaccta agtcattttc atacatatgg cgaattttga
    12541 cacgcccggt taaagattcc tcaagctggc gaacgttata tacaggaata ccattcaatg
    12601 tacatttcgc taaaaattta tgccattctg cggacaaatc aggatagtgt aaatctaccg
    12661 caatagagtt aattctcttt tcccccaata ttggttcact taattgaatc cactctacat
    12721 tctgaattcg gttcaaattg atagctcttc cgaatggaac caaagcgatt ttagggataa
    12781 tccaacttct tgaaagaaaa taaccaataa aacaaaatag aattgtgagt ataaagctcg
    12841 tacctagcaa tgtattagaa taatcaaatc taaatattgt taacacgatt aataaaaccg
    12901 cataccaaga aataacggtg gaaaaaacaa aacttgctga cttattacct ggatatttca
    12961 ttaacactct taagctgata gctatcatta caaaggcaag agaagtcgct ataatcgtat
    13021 tagaacgagt ttcaatagaa ttaaatttct ctccccaaaa atagatagcg ggtaagacac
    13081 ttgagaacat aacgcccaaa atactttgaa cagctgtact aaaaaagata cgttcatacc
    13141 aacgagagtg tcttttcttt tgctgaatgc tcataattta tccttttctt aatttcttat
    13201 aaagtcttcc taaaagagat ctaggcaata accgtggtaa ggctctaagt ataaaaaaca
    13261 tgcttgatga gattattgat tgtaatccca actctttttt caattttgct aattggtact
    13321 cactcttaat gtaattccac cctttacgcc gagcgtacat tgcagaacct gaacgaacat
    13381 ttaccagtac atctggtaaa ttatacacct catatttctg tgtaataact cgtaaccata
    13441 aattgtaatc ttccatataa agatgatgct gatagcctcc aacatgctcg atcacagatt
    13501 ttttataggc tactgccata tggttaaaag gatttcttag taatgctgaa atacgaattt
    13561 catcatcatt aatgggcact tgttttatac ccagagaatt agacattgtt tcgtcaaatt
    13621 cttcaacttg tccccccaat aaaaccacat caggattttt actaataaaa tcaatttgct
    13681 tttcaaatcg agatggtaag caaatatcat cagtatccat tctaaacacc cactcattag
    13741 agcagtgttt taagccttca tttaaggccg gcctaaaccc acattttgtg gtaaactaac
    13801 aacaacaagc ggtaattttt cagtaaaatg ttgcacaatt cgctctaaat ctccaggaat
    13861 tataccatca aaaaccacaa caatttcact tgctggtaaa gtttgggata ctaaagaatc
    13921 taaacacatc tctaaataag ctggtttttc tttataatac aaagatatta atatcgaaaa
    13981 cttcacaact acttttccca ctttttc
//
LOCUS       DANLXB010000059        13885 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLXB010000059 DANLXB010000000
VERSION     DANLXB010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13885
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..624)
                     /locus_tag="PXD41_001119"
     CDS             complement(<1..624)
                     /locus_tag="PXD41_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6288663.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTP"
     gene            complement(621..1046)
                     /locus_tag="PXD41_001120"
     CDS             complement(621..1046)
                     /locus_tag="PXD41_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288664.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(1053..1205)
                     /locus_tag="PXD41_001121"
     CDS             complement(1053..1205)
                     /locus_tag="PXD41_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288665.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            complement(1366..2052)
                     /locus_tag="PXD41_001122"
     CDS             complement(1366..2052)
                     /locus_tag="PXD41_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288666.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(2447..2770)
                     /locus_tag="PXD41_001123"
     CDS             complement(2447..2770)
                     /locus_tag="PXD41_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6288667.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(2883..3101)
                     /locus_tag="PXD41_001124"
     CDS             complement(2883..3101)
                     /locus_tag="PXD41_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL6288668.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            complement(3376..4602)
                     /locus_tag="PXD41_001125"
     CDS             complement(3376..4602)
                     /locus_tag="PXD41_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6288669.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            complement(4877..5243)
                     /gene="ssrA"
                     /locus_tag="PXD41_001126"
     tmRNA           complement(4877..5243)
                     /gene="ssrA"
                     /locus_tag="PXD41_001126"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            5409..6368
                     /gene="rpoH"
                     /locus_tag="PXD41_001127"
     CDS             5409..6368
                     /gene="rpoH"
                     /locus_tag="PXD41_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL6288670.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            6534..6827
                     /locus_tag="PXD41_001128"
     CDS             6534..6827
                     /locus_tag="PXD41_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL6288671.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(6845..7147)
                     /locus_tag="PXD41_001129"
     CDS             complement(6845..7147)
                     /locus_tag="PXD41_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6288672.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(7119..7409)
                     /locus_tag="PXD41_001130"
     CDS             complement(7119..7409)
                     /locus_tag="PXD41_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6288673.1"
                     /translation="MKIYTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNE
                     FRIQSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
     gene            complement(7547..8086)
                     /locus_tag="PXD41_001131"
     CDS             complement(7547..8086)
                     /locus_tag="PXD41_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL6288674.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
     gene            8157..8834
                     /locus_tag="PXD41_001132"
     CDS             8157..8834
                     /locus_tag="PXD41_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL6288675.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            9019..10866
                     /gene="typA"
                     /locus_tag="PXD41_001133"
     CDS             9019..10866
                     /gene="typA"
                     /locus_tag="PXD41_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL6288676.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(10915..11352)
                     /gene="rimI"
                     /locus_tag="PXD41_001134"
     CDS             complement(10915..11352)
                     /gene="rimI"
                     /locus_tag="PXD41_001134"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL6288677.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(11345..11767)
                     /locus_tag="PXD41_001135"
     CDS             complement(11345..11767)
                     /locus_tag="PXD41_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL6288678.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            11897..12886
                     /gene="rsmC"
                     /locus_tag="PXD41_001136"
     CDS             11897..12886
                     /gene="rsmC"
                     /locus_tag="PXD41_001136"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL6288679.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     misc_feature    13016..13138
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            13160..13537
                     /locus_tag="PXD41_001137"
     CDS             13160..13537
                     /locus_tag="PXD41_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL6288680.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     gene            13604..>13885
                     /locus_tag="PXD41_001138"
     CDS             13604..>13885
                     /locus_tag="PXD41_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6288681.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQG"
BASE COUNT         3911 a         2773 c         2950 g         4251 t
ORIGIN      
        1 aggcgttact gattttgacg atagtacgcc ttttagtatt tgttgatagg cttcatcatt
       61 aattagggct ttttgaatga aataaccggc ttctatattt gccttaatct catctaacga
      121 atcgattctt atatggcggt agaaaataaa gctgtcccgt gtgataaatt cgtgtgttcc
      181 tgcctttaaa atacaagttt catcaagtgc tttcccgtct ttaatgcttg agcagtttac
      241 acttaaaatc atatctcctt taccggtttc accatcaaag cacggatcgg taacctgctt
      301 atccagccct agcaacttcg ctttgcccat tgtggcttga gtcattgcgt tagggttttc
      361 tttctctctc gccagtatac gagcctcttc cagctccttt aaaaggtcat caacggttaa
      421 tttatggcgt tctgcgtgtt cggctttcag ttcctcaatc cttgccgtaa tcttgccgtt
      481 atccattagc tctttagctt ttcggtggac ggtttcggac ttcatatctt cggtttcata
      541 ggcttggcgg taggcttcgc tagcattgcc ggtttcaata taagcaaagc aaaaagcctc
      601 ttgttttggt gtgagttcgg tcattctttc ccctccgcca ttcgcttttc agcaaaggca
      661 taatcgattt tttctcggta ttctttgctc atctgctccc gtgtaatttc gttgccgtgt
      721 cggtcaataa atgggtttgt tcgttgtggg tgggggagct tgttgatttc actcaataag
      781 tcatcattca ctaatagcgg cgtggcggtt agctgttgat gataggcaat aatcgctaga
      841 gcctctaaaa agcccgtagc ccctgccatt tcaatattga tatgatcttc aaggtcaaga
      901 gaaagcacac cgataaaaaa cggtctgccg ttatcgtggt gcagtcgttc aattcggata
      961 tgcggaaaat ctaaaaagct caaggttgct ttgataggtt cattcattaa agcagtaata
     1021 cccgctaaat taagctcgtg tttcattttg gtttattcct ttattctttc cgccactttt
     1081 aacagttggc taagttgttt tcttaaaatg ccgagtgtga ttgaatcggt ttcgcttggc
     1141 attgcgttat gttgttgttc cagcttcgct attcggttgc ctagcacaat taaaagctcg
     1201 ggcaatgggt aagctcggtt tcagaataga ggcttaaaaa cgtgaatagt ctgctaaata
     1261 atcaggtgtt atctcagaaa aatcgagctt tttccctagt gctgcttcta attcttgttt
     1321 atttaaaagt aaattttgga aatcatttaa attcattgct gccacctaga acggaatatc
     1381 atcatcaaaa ttaaagctgc ttgattgttt ttcatatccg ttattaattg ctacaaaatc
     1441 aaaggctgct tttaaattag tattatcttt atcaatgctt ggacttattc cgccatattg
     1501 tcgataaagc tgtatatttt tatctttgag taagcggttt aaatcgttag ctgtttcact
     1561 aagacttgag taatgtttac ttgcccattc tatgaagtca taaacagaaa tataatcatt
     1621 ttgaatttgg ctaatctctg attgtgtttg cttggtggtt aatttatcta acaaggttgg
     1681 cgattgtgtt ttaatcagct gtgttatttc tcttgctgtt acgtaataag catttaaatg
     1741 ttcaacatca atagaatttt gagcaataac atcacttaaa acgcctttag gctgatcgaa
     1801 agcgtctttg aaatgtagtg ttttgggctc aatagcatag ctttcaccat cttcaaagag
     1861 agtgcaattt acaaaagcat tcgtatatat tccattttgc tgaaaggaaa aaatgaggct
     1921 tttcaattta tccgctatat gtgaaaaagg tttatttgta tagtttgata attcttgtat
     1981 cagttcttga aagctgattt tgggctcaat acgattttca agcctagaaa taaattgact
     2041 gtgatctgcc ataagcgccc ctttaacgta tccctttact gtgagagcgt ggaaagagaa
     2101 ataaagggct ttctcctttc gtgccggtta attactccgc cactatccac gctaatttga
     2161 ataaatccgt atagttacgg attgaacttg ataggttgta ttttgctaat tattcagata
     2221 aattacaagt aataagctgt gttttattac agtaaatcaa aataggctaa agatgggttt
     2281 ccggacgcta taaaaaagag cattcaagcg gtcatatttc attaaggttt tgcgaatagt
     2341 gcggaatttt cggagcagta cgcacgcaag gagcaaataa aaagccgtca atatccatca
     2401 acggctattt aaaagtgagg ttttgacagg tagcaagtga taagttttag ccatttttga
     2461 cttgtggaat aagcactaaa ttgaatgccc ctagaatttt ttgaatagtg tcaaagcgtg
     2521 gtttgctgcc tttggctagg gttttatata ggctctctct gcctagccct gtttgcttgg
     2581 ccagctccgc cattcctctt gctcttgcta catcgttcaa ggcttctaaa aattcgtctt
     2641 ggtcgccctc ttttaacact tccgctaaat aggcttgaat agttgcctca tcggttaaaa
     2701 actccgccac gtcaaaaggg cgtaaaccgt gcttttctgc tgcctgttca ttgatttgta
     2761 ttgtttccat tgctttctcc tgtagttttt aattcagccc ataatgcttt cgctttctct
     2821 atatcggctt gctgtgttga tttatcgccg ccgtgtaaca agatataaat tacatttcct
     2881 tgttatgcgt aataaattct atatccggct cctgttgcta tccgcatttc ataaagtccg
     2941 cctgtaccgg ctaaagattt atgatcgcca aagttgccat taatcgcatt ttttatccgt
     3001 cttgctaccg ttgcttttgc gatagggttc tttaaattct caagccattt tgaaaaatta
     3061 tcggtaataa taatttgatt agtggtttgc tctctcatca ttgccggctt cttattctat
     3121 ttattgctta ttgtatccat taagatacag tgagcaaggg tttttgccat ttacccactt
     3181 ttaacccact ttacccactg tcattttttc tttatttttc agttagttat aaaaaaataa
     3241 tagtgaaaag tgggtaaagt gggtaaaaat cgaaaagttt acagaatttt catcaagggg
     3301 aattacgggc ataaaaaagc cgtcaggcgg tttacctaac ggcattacaa gcggtcattt
     3361 ttggcggaaa atttactagg ctattttcaa atgatattgc ggtaagctac cttgcgaaca
     3421 ttcctctaca aaatccgccc acacttggag cagtttaaaa cgttgctcta ggcgttcgcc
     3481 tctatcatag gcggctttga ttcggtcgct gtttaaatgc gataaggcaa cctcgattaa
     3541 atcgctattg tagcctttct cattaagata agtggaggcg atggcccgca agccgtgagc
     3601 cactaatttg cccttgtagc ccattcgttt gatcgcaccg ttggcggttt gagtattgac
     3661 gtgcgtttgt gggttcttca cgctagggaa taaatacgtt ttaccgccac ttagcttttt
     3721 aatctctcgc aaaagtgcga ttgcttggcg tgagagtgtg attttatgct caatgcctcg
     3781 cttcatattt tccgccggta tcgtccacag tttggctttt tcgtctatat ccgcccattt
     3841 tgccttagcc gcttcattcg ggcgggtcat tgtgagtaac tgccacagaa ttaaatagcg
     3901 tgtctgtaaa tgaatttggg cgttttgtaa ggtgtataaa aactcgccta aatcttccgg
     3961 cttaatggtt ttgaaatgtt caaccgttgg gctatcaaac tctttcgcaa tattggcggt
     4021 agggttaaac ggtatcattt cacggtgtac ggcaaacatc ataatttcat tatgtttttg
     4081 aattgcccgt tttaacttct ctagtttgcc ctcgtcttgg tattgcttga atgccttgat
     4141 tgccattggt gcggttattt gtgtgatagg cattcttcca aagtgcggca agaggttatt
     4201 tttaattaag gcgattacat ctttttggta gttgtctgaa aaattcttct tggtcttgcg
     4261 gtgttccagc cacgcccacg ctacattttc ataagtgttg ctgatttcgt tggcctttgc
     4321 ctgttcctgt tgttggcggt gggtttgagg gtcgatattt tgagccaata atgccctata
     4381 ttcttctcta atttctctcg cttgtgctaa agaaatatca gggtaagccc caatgcttaa
     4441 atcattccgc ttttttgtga acggtctttc atacctaaac cgccacaatt tagaatttga
     4501 ggtaataaca agtagtaagc cgttaccgtc tcttaatggg ctgtcttccg gtttcgcttt
     4561 tcttatttgg gtatcgttta acggtgtgat ttttctagcc atagtaaacc tttaggagta
     4621 taaagcctaa atcttaggag tatgattttt tgtttgggag tacaaaacta aaagcgataa
     4681 agccttattt gaaaaggctc taaagtggtt ttaggagtac gaatttttgg gggtattccg
     4741 gcgtactcct aaatatactc ctaaaatctt cggatttgat tgtatcgtat aggtacgcaa
     4801 cggacaataa aaaagccttg aaacattgat tttcaaggct ttttaggtat cggttgaacc
     4861 gtataggatt ataatttggt ggagctgggg ggatttgaac ccccgtccga aatttctcta
     4921 ccttcagtac tacatgttta gtctagtctt taatttcgct tattcacagc ggacagacac
     4981 gcaatgaata aactagcttt atttaattta gtgtttcgat cctaaagcgg cggcgtccac
     5041 acgatctcgt tttgggtgac ttatctttgc cctcgtctta cgagcggaag ctgaggagat
     5101 aaggctttaa agcaggttat taagctgcta aagcgtattg ttcgtcgttt gcgactatta
     5161 ttttgcggtt tgtttacgag gcctaccgca cctcgacatg caccttgggc ttcgccaatc
     5221 ccgtcgaatc caaaatcagc cccaaaagta gcggtattct aaaggaaagc ggtcgaattt
     5281 gcaaaaagtt ttgcaagtgg cggaacttag cggtattgaa tagctcgaaa taaaatcata
     5341 caaatcccac accagataga tttaactctg ttataatgta aaccttgctg agagtgaaga
     5401 gaaatagaat gaaaaaattt aacgagaacg agattgaaga tgctgaaatt atagatgccg
     5461 agccgattga tgttgatgag atagacgaag aagaaacatc ggtagaagca atgcatccgg
     5521 ctttggtttc cggctcaatg cctgtgccgc agggcaattt ggatagctac atccgaatgg
     5581 caaatcagta tccgattctc accgccgagc aagaaaaaga actggcggag cgttattatt
     5641 atgatgaaga cgttgaggcg gcaaaacagc tgatcctttc ccatatgcgg tttgtgatcc
     5701 atattgctcg tggctatttg ggctatggtt taccgctggc agatctgatc caagagggta
     5761 atatcggctt gatgaaagcg gtaaaacggt ttgacccgaa tgtcggcgtg cggttggttt
     5821 cttttgcggt tcattgggtg aaagcggaaa ttcacgaata tgtgctgaaa aactggcgaa
     5881 ttgtgaaagt ggcaaccacc aaagctcaac gtaaattatt ctttaattta cgcaaaaata
     5941 aaaaccgctt ggcgtggttt aatgaagaag agatcaaaaa agttgccgat gatttagggg
     6001 tttcagtgga agaagtacga gaaatggaat ctcgaatgac cggacaagat ttaggttttg
     6061 acctgcctgc cggtgatgac gatgaagaca gctacgctcc ttctatgtat attgaagata
     6121 gcagctccaa tttcgccgat gacttggaag acgaacaaca taatgggcag gcaaccgctc
     6181 aacttgccta tgcgttagcc acccttgatg aacgtagcca agacatcatc aaaacccgct
     6241 ggttagatga caataaagcc acactgcaag atttagccga taaatataac atctcggcag
     6301 agcgggtaag acagcttgaa aatgccgcat tgaagaaaat caaggaagcg atttcattag
     6361 acggctagaa atgcctacaa gcggtgattt ttttactcgc tacgctcgca cttcgtgccg
     6421 tcggcagagc caacgttcaa acgcaagcgt ttgtgcaaaa ttttacgcaa aaagcaccgc
     6481 ttgtattttg actaaaaatg aggatactat gattaacatt accgataaac aaattgaccc
     6541 aactttctac cagcgtctac cagcgagcag acggctttat taacgttgcc aacgctcatt
     6601 taaaaaacat tgccccaaac caagtcagca atgcgatgtt gtttggttgt gccagattta
     6661 acgcctatgt tgcggcaagc aaggcggaat ataaacagca gttggccgat tccagagaag
     6721 aagttattca atattttgtg gagcaataca aagaaatgct cactgcaaat ttagatgaat
     6781 atatccaaaa cttcgagcga tatattgaag ggaaaaaggc ggattaaccg cctttgtttt
     6841 gtggtcaaac ttgttttaca aaatcactta aaacttgatt aattctactt tgccaacctt
     6901 tacctgaagc tctaaaggct tcaagaacgc ttttatcaag acgtaacgaa accaattctt
     6961 tctttgaacc agctggtctg ccacgttttt tcattgcaat tgaaaactct gatggcgtaa
     7021 ccgggcgttc atcgtcatct tttccgtccc aaataaaatc ttggcttgcc ggaatagctt
     7081 gaatagccat aagtagctgt tttttctcta aatttttatt attcaaagta ttgttgtaag
     7141 tattcataat atgcctctct ttctgcttta gatgctcgcc gaaagctaat tactctgatg
     7201 taatcttccc tttctgtata tgcaagtgat aatacgagta aacgtccaaa tgaatatgca
     7261 aaagattgta ttctaaattc attgttacga ataacttcaa catcaaatcg atagggcgat
     7321 gagagaactt catctgcatc ggcaaaatct aatccgtgct tggctaaatt gattttgcgt
     7381 ttagtttcgt cccaagtata aattttcata attattgtat atacataaaa taaatctaac
     7441 aagaactaaa tttaatttag caaacagtaa tttgaaaatc agattagaaa tacatttttt
     7501 cgatgcagat cgcaaaaata aaatgaaatt taactgcttg aagagtctac tgagccattt
     7561 tccccgctac cgttaaaaaa ccatctgcgg ttttaaaaat ttcaccgaat ccttgagcct
     7621 ccaaaatttg gtcggagact tcacgaaacg ccccttcacc accggctttt tgcaataccc
     7681 aatctgcttt ttctttgatg taatcgaggg cgttacgggt tgcaatcgca atgccacaca
     7741 cttcaaaagc cggtaaatct aaggtgtcat caccaatgta agccgtttgc tcaggggtaa
     7801 caccggcttg ctgcattagc tcaaagcagg cggagcgttt ttccattttg cctaacaaag
     7861 cgagatcaat tttcagcacc tctaaccgtt tgcggagcaa agccgtatcg ccgcccgaga
     7921 gtactgccac tttaatgcca caactttgta acatcttaac gcctaaacca tcgtgaacgt
     7981 ggaaacgttt cattacttcg ccttggtcgg tgtagtacat tccgccatcg gttagcacgc
     8041 cgtccacatc ggtaatcact aatttaatct tggtgagatc taacattttt ttgcctcaaa
     8101 tatggtatga ttttaccatt atagcttttt tacctccgtt taccaaagga accgaaatgt
     8161 cgattgccga gaatttatcg caaatccatc aacaaattca gcaaatttcc gaacaatatc
     8221 aacgagataa cgtgcgtttg ttagccgtct ccaaaactaa accagttgag gcgattcaag
     8281 cggcgattga ggcagggcag cgtgcatttg gcgaaaatta tgtgcaggaa gcggtcgaaa
     8341 aaatcgaatt ttttgcaaat cgccccgaat tagaatggca ttttattggg ccacttcaat
     8401 caaataaaac caaattggtc gctgcctatt ttgattggat tcaaacggtg gatagattaa
     8461 aaattgccga gcgtttaaac gaacaacgcc cagcggataa agccccgctc aacgtgctga
     8521 ttcaaattaa tatcagcgat gaagcctcga aatcgggcat tgaaccagat gaaatgctac
     8581 cacttgccca agcgatttct caattaccga atttgaaact gcggggctta atggccattc
     8641 ccaaaccaga aagcgagcca gagcaacaaa aagttgcctt tcgcaaaatg cagctacttt
     8701 ttaaccgctt gcaaacagaa tttgacgaca ttgataccct ttcaatgggg atgtcggacg
     8761 atatgcaagc ggcgattgaa tgtggctcga caatggtgcg gattgggact gcgatttttg
     8821 gggcgagacg ttagccagct gagtttttac ataaagctga tacaagcggt caaattcgcc
     8881 aaaaactttg caaattccac cgcttgtttt gtagccaaca gcggaaaaag tctgtataat
     8941 tacgcctcct aatttcttga ctctcgccag ttttgatggg cgagagtttt tattttgact
     9001 taacttaaag atattccaat gcaaaatgta gatatttcaa aattgcgtaa cattgcaatt
     9061 attgcccacg ttgaccacgg taaaaccacc ttggttgata aacttttaca acaatcaggc
     9121 acctttggtg aaactcgtgg tgacgttgat gagcgtgtaa tggattccaa cgatcttgaa
     9181 aaagagcgtg gcattaccat tcttgcaaaa aatacggcaa ttaactggaa tggttatcac
     9241 atcaatatcg tagatacccc agggcacgct gacttcggtg gtgaggttga gcgtgtactt
     9301 tcaatggtag attctgttct gttagtggtt gatgcctttg atggcccgat gccgcaaacc
     9361 cgtttcgtca cgcaaaaagc gttcgctcac ggtttaaaac caatcgtagt gatcaataaa
     9421 gttgaccgcc caggtgctcg ccctgattgg gtggtggatc aagtgttcga cttgtttgta
     9481 aatttaggtg caagtgatga gcagttagat ttcccaatta tctacgcttc agccttaaat
     9541 ggtgtagcag gcttagaaca cgaagaccta gcggcagata tgaccccact ttatgaagcg
     9601 attgtcaaac acgttcaacc accacaagtg gaattagatg caccattcca aatgcagatt
     9661 tcgcaattag actacaacaa ctatgtgggc gttatcggta ttggacgtat caaacgtggt
     9721 tcggtgaaac ctaaccaagc ggtaacgatt gtagatagcg aaggcaaaac tcgccaaggt
     9781 cgtatcggtc aggtgttggg gcatttaggt ttacaacgtt ttgaagcaac agaagccttt
     9841 gctggcgata ttgttgcgat tactggttta ggcgaattaa atatttcaga tactatttgt
     9901 gatattaacg cagtagaggc tttaccagca ttaagcgttg atgaaccaac ggtaacgatg
     9961 ttcttctgcg taaacacctc gccattctgc ggtcaagaag gtaaatttgt gacttcacgc
    10021 caaattcttg agcgtttaaa caaagaatta gtccacaacg tggcattgcg tgtggaagaa
    10081 acttcgaacc cagacgaatt ccgtgtgtca ggtcgtggcg aattacactt atcggtatta
    10141 atcgaaaata tgcgtcgtga aggttacgag ttagcagtgt ctcgcccgaa agtaatctac
    10201 cgcgaagaag acggcaaaaa acaagagccg tttgagcaag tgacgattga tatcgaagag
    10261 caacaccaag gttcagtgat ggaagcactt ggtatccgta aaggtgaagt gcgtgatatg
    10321 attccggacg gcaaaggtcg tacccgttta gagtatgtga tcccaagccg tggcttaatc
    10381 ggtttccgta acgaatttat gacgatgacc tcaggtactg gtttacttta ctctacattc
    10441 agccactatg atgacgtaaa accgggcgaa atcggtcagc gtaaaaacgg tgtgttaatt
    10501 tctaacgcaa cgggtaaggc attagcatac gcattatttg gcttacaaga gcgtggaaaa
    10561 ttaatgatcg accacggtgt tgatgtatat gaagggcaaa ttatcgggat tcacagccgt
    10621 tcaaacgatt taaccgtaaa ctgcttacag ggtaagaaat taaccaatat gcgtgcatca
    10681 ggtaaagacg atgccatcgt tttaaccaca ccggtgcgtt tcactctaga acaagcgtta
    10741 gagtttattg acgatgacga attagtggaa gtaacaccac aatcggtgcg tattcgtaaa
    10801 cgtttattaa ctgaaaacga ccggaaacgt gcaagccgta ctacaaccag taccagcacg
    10861 cactaactga taaaaaagag cgactgaggt cgctcttttg gttttaaatt ctccctacaa
    10921 atataacgcc attaccaccg cattttcttt gctaccgttt ggcgtggggt aatagttttt
    10981 gcgggtggta acttcattaa aaccgagtga atcgtagagt tttctggcag aatggttgga
    11041 ttctcgcact tccaaccaca gggtggtgag tttccgttgt tgcagttgca aaattaattc
    11101 ggaaagtaac cgcttgccaa tgcctttgcc ttgaaaatca ggagcaactg caatgttaaa
    11161 taaggttgct tcatctagca cgatatgact aatggcaaaa gccacaattt tgttttgctc
    11221 taccactttt aaattcaggt atttttcacc ctgattattt aataacgtcc cctttgacca
    11281 cggcactaaa tgggcttgtt gctcaatttc aaataactgc tcgaaatctt ccgcttgaat
    11341 ttgctcaatc acgctgttct ccaaattgtg ccgaaaaagt atcaatttgt tgccaaagtt
    11401 ggcgtttggt cgtagatttg gctaaatctt gccaagactc gtttttccaa gcggtctgat
    11461 tagtaaaact ttttgccatt ttgaccgctt gttcttccgc ttgaatcagc caaaagatcg
    11521 gcgaatgctc aaacaccaaa cgttgtgatt gttcgccagt cagccattga tattcgctgt
    11581 tttttaactt taaagcacgc agaatatcgg caaagagccg gctgtgttgg tgatcttcct
    11641 cacacactac caccaatttt accgcattgt ttaggcggat ttgagcatcg ccttttagca
    11701 cttggggatt ggttagcacc cattgcgaaa tacccatttc ctgtaacagt aaatcacgac
    11761 gattcattta aaacctcatc aaattttgca aatagtatca aaactccgct tgaacagaaa
    11821 cttttttcaa aaaattcaag atttctgtac ttaaattcgg tatattcacg ctaaattttt
    11881 tagataaggt aagaaaatgc tctctttaga aagcgaagta cttgaacgcc atttggcgtt
    11941 atttgaaaac aagtcggtgt tattatttgg cgatgtgcga gatgattttg cccgccagct
    12001 gcaatctcgt gcggaaaagg ttgcggtatt cagtagctat tttgattacg cacgccacca
    12061 tagtgaggtt gaatttggct tagaatgtgg tttgagtgcc gagttagcgg tgttttattg
    12121 gacgaagaac aagcaggaat gccaattcca actgctacaa tggctgtcgc aatgccaagc
    12181 agggcaagaa atgttgatta tcggcgaaaa ccgagctggt gttcgttcgg tagaaaaact
    12241 gctcgaaccg ttcggcaata ttgccaaaat cgactctgca cgccgttgtg gtttatacca
    12301 ttttgagcta cagaccgtgc cgacattcga ttgcaaaaaa ttctggaaat cctaccgctt
    12361 gcaagactta gatgtgttcg atctaccagc ggtttttagc tcggcggagc tggataacgg
    12421 caccaaatta ttgctttcaa ccttcgacaa agcagacagg ctaaaaggca aagtgttaga
    12481 tttaggctgt ggggctggcg tgattggggc aacgctcaaa caacaatttc cgaaaatcaa
    12541 actgacgatg agcgatattc acgcaatggc gttggaatcc ggcagacgta ctttggcgga
    12601 aaatcagtta gagggggaag tggtagcaag tgatgtgttc tctcacatta atgaacggtt
    12661 tgatttaatt gtctccaacc caccattcca cgacggggtc gataccgcct accgagcggt
    12721 ggaggagttg attttccaag ctaaaaatca cctaaccaaa ggcggtgagc tgcgaattgt
    12781 cgcaaacgca ttcttgcctt acccagattt gctcgataaa gccttcggca aacacgacgt
    12841 actggcaaaa tccaccaagt ttaaggtgta ttccgcaaga acataatagg cagaacaaac
    12901 ggttataaaa aagccggtat ttgcttaaaa aagtgcttga tatttctgcc ggcttgacgt
    12961 aaattctgtt catactgttt tggagtaatg caatgaattt aaactacact ttacatcacc
    13021 accacacttt aacctgatat ctttcgggca tttggtgtgt gcggaagata actcttccga
    13081 gcaagtgtag caaatcaata aagatctctc ggaaggcaac tttcgagaga tttttttata
    13141 gataaaattt gggaataata tgaaaaaccc gattgaaatt taccaaagcc aagacggcaa
    13201 aacccaagtt tccgtgcagt ttgataagga aacggtgtgg ctaagtttac agcaaatggc
    13261 agatattttt ggacgagata agtctgttat ttctcggcac ttacgaaata tctaccaaga
    13321 aggtgaactg gagcgtgagg caactgttgc aaaaaatgca acagttcaaa ttgaaggtgc
    13381 tagagaagtc gttcgcctaa aagactatct ggtgaaaggc tatgccctta acgaacgccg
    13441 tttgcaggaa cgaggtatcg agtttgagca ggtgattggt ttgctcagtc aatacactgg
    13501 ttgtcttagc cttgttggtg gcagaaagtt tgcctgaaca aaaagaactg atgattaaac
    13561 tgattgaaca ctttatttta ttaaaagcat aacaggaaaa aatatgagta ttaatatttc
    13621 gccgttagcc tccaaaaatc tcactgaatg gaaactattg tggcaacaat atttagattt
    13681 ttatcaagtg aatttagcag atgatattat tcaatcaact tggcagaaag tttcagagag
    13741 tgaaaatgta aagggatttg gggcttttgt tgataacaga atggttggtt ttgttcatat
    13801 tgtgattcac ccaaatactt ggaatttaac tgaatgctgt tatttggaag atttatttgt
    13861 tttagctgaa tatcgcaacc aaggc
//
LOCUS       DANLXB010000060        13751 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLXB010000060 DANLXB010000000
VERSION     DANLXB010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13751
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(51..767)
                     /gene="rph"
                     /locus_tag="PXD41_001139"
     CDS             complement(51..767)
                     /gene="rph"
                     /locus_tag="PXD41_001139"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL6288682.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1048..1911
                     /locus_tag="PXD41_001140"
     CDS             1048..1911
                     /locus_tag="PXD41_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL6288683.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            1920..2810
                     /locus_tag="PXD41_001141"
     CDS             1920..2810
                     /locus_tag="PXD41_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL6288684.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2842..3102)
                     /locus_tag="PXD41_001142"
     CDS             complement(2842..3102)
                     /locus_tag="PXD41_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL6288685.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3332..3751
                     /gene="rbsD"
                     /locus_tag="PXD41_001143"
     CDS             3332..3751
                     /gene="rbsD"
                     /locus_tag="PXD41_001143"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL6288686.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3761..5257
                     /gene="rbsA"
                     /locus_tag="PXD41_001144"
     CDS             3761..5257
                     /gene="rbsA"
                     /locus_tag="PXD41_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL6288687.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5267..6235
                     /gene="rbsC"
                     /locus_tag="PXD41_001145"
     CDS             5267..6235
                     /gene="rbsC"
                     /locus_tag="PXD41_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL6288688.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6258..7136
                     /gene="rbsB"
                     /locus_tag="PXD41_001146"
     CDS             6258..7136
                     /gene="rbsB"
                     /locus_tag="PXD41_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL6288689.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7257..8186
                     /gene="rbsK"
                     /locus_tag="PXD41_001147"
     CDS             7257..8186
                     /gene="rbsK"
                     /locus_tag="PXD41_001147"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL6288690.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8200..9210
                     /locus_tag="PXD41_001148"
     CDS             8200..9210
                     /locus_tag="PXD41_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6288691.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9246..9875)
                     /locus_tag="PXD41_001149"
     CDS             complement(9246..9875)
                     /locus_tag="PXD41_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6288692.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10073..12232
                     /gene="rlmKL"
                     /locus_tag="PXD41_001150"
     CDS             10073..12232
                     /gene="rlmKL"
                     /locus_tag="PXD41_001150"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL6288693.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12409..12888
                     /gene="trmL"
                     /locus_tag="PXD41_001151"
     CDS             12409..12888
                     /gene="trmL"
                     /locus_tag="PXD41_001151"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL6288694.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(12982..>13751)
                     /locus_tag="PXD41_001152"
     CDS             complement(12982..>13751)
                     /locus_tag="PXD41_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL6288695.1"
                     /translation="EEKDKWYFSIIDVIAILTESLDPSAYWRKLKQRLKAEGNETVTN
                     CHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQWLAKVGYERLQEINDPS
                     QSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSGVEQPQDFAFLTNVIHQE
                     WSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQIAESMQAVGVDENAQAG
                     KQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
BASE COUNT         3965 a         2700 c         3196 g         3890 t
ORIGIN      
        1 tttgtcagat gtagatttta tttaaaaaga aaatcaaaaa gagaagtgaa ttattcagct
       61 aacgctttac gttgagcttc aactagctgg ctaatgcctt gcttcgctaa atctagcaat
      121 gtcagtaatt cttggtgcga gaacggttcg ccttctgccg tgccttgtac ttccactaaa
      181 cgaccatctt cgaccatcac cacgttcata tcagtttcag cgttggaatc ttccagatat
      241 tctaaatcgc acaccgcttc gcctgctaca ataccgacag aaattgctgc gactaaacct
      301 ttcattgggt tagtttttag tgttccatta gctactaact tattcattgc atcgtacaat
      361 gctacgcacg caccggtaat tgaggcggtg cgagtgcctc catcggcttg aataacatca
      421 caatctacgg taacggtacg ttcgcctaag gcttttaaat ctaccaccgc acgcagagaa
      481 cgggcaatca agcgttggat ttccattgtg cgtccgcctt gtttgccttt tgccgcttca
      541 cgctgagtgc gagagtgggt ggctcgtggc aacataccat attctgcggt aacccaacct
      601 tgttgctgac cttttaaaaa gcgtggcacg ctttcttcta ccgtagcgtt acacaatact
      661 ttggtttcgc caaactcaat taataccgag ccttcggcat agcgagtgta gttacgggta
      721 attttaattt ctctaacttg gttgtttgct cgattatttg gacgcatttt cttttccttt
      781 tgctaaaatt tttaccattt tagcaaagaa cacagtaaaa tgtgattttt ctttagcaaa
      841 gaatttacat agccctcgcc ccttgtggga gagggacgga tttttcttcg ttcagaagaa
      901 aaatcaggga gaggggtaag cggttatttt tatctcaaat tttacaaatt cctccctctc
      961 tctgaaaaat atttctgaac gaaatatttt tcggtctctc tccctcaagg ggagagagct
     1021 ttacttataa aaacacaagg aataccaatg atttatagta tgacagcatt tgcccattta
     1081 gaaatgaaaa aagagtgggg caatgcggtg tgggaaattc gctcggtaaa tcaacgcttt
     1141 ttagaaacct attttcgttt gccggagcag tttcgcaacc tagaaatgac cttgcgtgag
     1201 cgtttacgtt ctgcacttac acgaggcaaa gtagagtgta gcttacgcat tgatttaagc
     1261 aaaacccaaa acagtgaaat tgcgttaaac aaagaatatg ccgcacaggt ggttcaatca
     1321 ttaaaatggt taaaagaaac cgcaaatgaa ggcgaaatca accttgttga tgtgctacgt
     1381 ttcccgggcg tggtggataa tgaaagccaa gatttagacc aaattgctca agatttatta
     1441 gccggctttg aacaaattct ggcagatttt atcgcaatgc gagccagaga gggcgagaac
     1501 gtgcaagccc tgatcttaca acgtttagaa gcaatttcag ttgaggctgc aaaggtacaa
     1561 gcccaaatgc cggaaattct gcaatggcag aaagatcgtt tacaacaacg gttcgatgaa
     1621 ctgaatttac agcttgatcc acaacgctta gaacaagaaa tggtgttact tgcccaacgt
     1681 gttgatgtgg cggaggaatt agaccgcttg caattacacg ttaaagaaac caccaatatc
     1741 ctgaaaaaag gcggtgcggt tgggcgtaaa ctggatttta tgatgcaaga actaaaccgt
     1801 gaatccaaca cgctcgcctc aaaatcgatt aatgcggacg tgaccaattc ggcggtggag
     1861 ctgaaagtgt tgatcgaaca gatgcgtgaa caaattcaga atttagaata ggacagatta
     1921 tggcaatgaa tttcaagcaa gtgagccaga gctatccaaa tctctgcgtg ccgctttctc
     1981 agtattgttt aattgaaatc gcaggggtag atgctgagaa atatcttcaa gggcaattaa
     2041 cctgcgatgt ggcaaaaatt tcggtgggcg aacatacgct aaccagccat tgtgatccga
     2101 aaggcaaaat gagtgcgtta ctgcgtttgt atcgtgcaga aaatgagaaa tttatggcga
     2161 tcattcaccg cagcttattg cctgaagccc tgacgcaact taaaaaatat gcggtttttt
     2221 caaaagtgac cttcacggaa ttagacaccc cactttatgg tatggcaggt gaagcagcat
     2281 ttgcaaaatt aagcgaaaat atgaccgctt tgcgtttaac cacaggacag cctcgggcca
     2341 ttgtttgggg cgaagagctt gaaacgactg ccgatgaaca gctctggaca ttaatggata
     2401 ttcaagacgg cattcctgtt ctcttgcaac aaaaccagtt tgagctgatt ccacaggcaa
     2461 ccaatttaca ggcacttgaa tctgcgattt cattcaccaa aggttgctac atcgggcaag
     2521 aaacggtagc gagagcgaaa tatcgtgggg cgaataaacg tgctttattt acccttgccg
     2581 gcaactttga aagcgaaatc agcttaccgg aagttgcttc tgcgattgaa atgcaactgg
     2641 gcgaaaattg gcgagcaacc ggcactgtgt tgaccagtgc gactgatgaa aataccctgt
     2701 gggtgcaagt ggtgctgaat aaagatgttg aacctaacac caagtttaga gccaatggtg
     2761 tagcgttgga aatggtcgag ttaccttata gtttggcaga aaatgagtaa aacgaacggt
     2821 catcagggta tgaccgtttt tttatatctg atcagggtga tgaatcatca caaaacgttc
     2881 ccacaactgc tcttcggttt cgatattatc aggatctttg ataatgcagt tggtaatcgg
     2941 gcaaactttc tggcaagtcg gcttttcata atgcccgaca cattcggtac ataacaccgg
     3001 atcgatgata taaatatcat cgcccaccga aatcgcctcg ttcgggcatt ccggcaagca
     3061 catatcacag ttggtacatt tgtgggtaat taataaagcc atagtttata ttgagaaaat
     3121 aaaaattaaa caagcggtcg attttgcaaa aaaatttgca aatcttaccg cttgtcacta
     3181 aatgctacct attataaagc aaaataattt gaactacttc acatttttgc aatttggttg
     3241 tttatccgat taagaaaatt ttttatgatg ccatcgaaac gtttcgatgg agtattttcc
     3301 aacgtgatgg agcgaaaata aaggggttag tatgaaaaaa acgctaaatc taaatgcaca
     3361 actttcgcac agtattgcga cactcgggca taccgatagt ttaacggttt gcgatgccgg
     3421 tttgccgatt ccaaacacaa tagagcggat cgatttggct ttaaccgccg gtgtgccaag
     3481 ttttttacaa acatttgatg tagtagttag tgaattattt gttgaacgag tgctacttgc
     3541 tgaagaaatt aaacataaaa atccgcaagt gttagcagct cttttggagc gtttaaccca
     3601 attagaacaa actcaacaga ataaaattca aattgattat gtgaaccacg aaatctttaa
     3661 agagcagaca cattacagta aagctgttgt gcgttcgggt gagtgttcac cgtatgccaa
     3721 tattatttta tattcgggcg tgccgtttta gggtggaatg atggaaacct tattaaaaat
     3781 gagcgggata gataaagaat ttcccggcgt gaaagccttg agcaatgcgt gcttatctgt
     3841 ttacggtggg cgagtaatgg cattaatggg cgaaaatggg gcaggtaaat ccaccttgat
     3901 gaaagtattg acggggattt atagcaaaga tgccggctct attagctatt taggcaaaga
     3961 agttaccttt aaaggcccga aagattcaca agaagccggt attagcatta ttcaccaaga
     4021 gctgaattta gtcggtaatt taaccattgc tgaaaatatt tttttgggcc gtgagtccaa
     4081 aaccgcttgg ggagctattg attggaaaaa aatgtatgcc gaggcggata aactgcttgc
     4141 ccgacttggg gtaaaacaca gtagccatca gctttgtgcg gagttatcca ttggcgagca
     4201 gcaaatggtg gaaattgcga aagccctgag ttttgagtct caagtaatta ttatggacga
     4261 accgaccgat gctttaaccg atacagaaac agcatcgttg tttaaagtta ttcgagagtt
     4321 aaaagcggaa aatcgaggca ttgtttatat ttcccatcgt ttaaaagaga tttttgaaat
     4381 ttgtgatgat gtgacggtgc taagagacgg gcaatttatc ggcgagcgag taattgccga
     4441 tattgatgaa gatcagttaa ttgaaatgat ggttggtcgc cgtttggaag agcaatatcc
     4501 gcatttacac caagagcgtg gcgagttatt acttgaagtg aagaatttaa gtggaagtgg
     4561 ggtgaataat gtgtcattcc aattacacaa aggtgaaatt gtgggtattt ccggcttaat
     4621 gggggcaggg cgtacagaat taatgaaggt gctttatggt gcattgccga aaacagccgg
     4681 ctcgatagag ttaaatggaa aagcgatttc caaccattgt ccgcaagatg ggttgaataa
     4741 cggcattgtg tatatttcag aagatcgtaa aggcgatggt ctgattttgg gaatgtcggt
     4801 aaaagaaaat atgtctttga cctctctcga tcatttctcc aaagccggca gtattcgcca
     4861 cgatgcagaa aaattggcgg tcgatgattt tattgagatg tttaacatta aaaccccaag
     4921 tcgggagcaa caaatcgggc tgctttccgg tggtaatcag caaaaagtgg cgatcgctaa
     4981 agggttgatg acccgcccga atgtgctgat tttagacgag ccgacacggg gtgttgatgt
     5041 gggggcgaaa aaagagatct atcaattaat taatgaattt aaaaaagatg ggcttagtat
     5101 tttgatggtt tcgtccgata tgccggaagt gttgggaatg agcgaccgca ttttagtgat
     5161 gcacgaaggg caaatcagtg cagaattttc acgagcagaa gcgacacaag aaaagctact
     5221 ggcagcagct attggcaaaa gtacaggatt aaattaaggt gtgtttatgg caactcaaac
     5281 aaagcagttt caacttggca gatttttaat cgagcaacgt tcttttgtag cgttatttat
     5341 tttaattgtc agtgtttcaa tgattaaccc tgattttttc agcgtggata atattttaaa
     5401 tattctacgc caaacctcgg tgaatgcgat tattgcggtc ggaatgacct ttgtgatttt
     5461 aattgcaggc attgatttat cggtcggttc ggttttagcc ttaaccggtg cggttgcagc
     5521 gaccttagtc ggttctgaat tgccgatttt gttggtgatt ccgctggttt tattattagg
     5581 gacggcattt ggtggtatta gtggggcgat tgttgctaaa ggtaaagtgc aggcatttat
     5641 tgcgactttg gtcacaatga ccttattgcg tgggattacg atggtttata ccgatggcag
     5701 accgattagc accggctttt ctgaccaagc agacgccttt gcgtttattg ggacaggcta
     5761 tttatttggt attcctgtgc cgatttggat tatggcggta gtgtttgggt tagcttggta
     5821 tattttgaaa cacaccccga ttgggcgtta catttacgct ttaggtggca acgaatcggc
     5881 aacccagctt tcaggcatca atgtgaataa aattaagatc ttcgtatttg ccgtgagtgg
     5941 ttttttatct gctcttgccg gcttaattgt gacttcacgt ctctcttctg ctcagccaac
     6001 ggcaggtgtg tcctatgagt tagacgcaat tgcagcggta gttgttggtg gaaccagtct
     6061 aatgggcggt aaagggcgtg taatgggaac gcttgtcggg gcattaatta tcggtttctt
     6121 aaacaatgcc cttaatttat tggatatttc ttcatattat cagatgattg ctaaagcgtt
     6181 ggttatttta gcagctgtat tagctgataa ttatctaggc actaaaaaag tttaatctat
     6241 ctttaaagga gatttctatg aaaaaattaa ctacgattgc atcagcggtt atgttaagtt
     6301 tatcggttgc agccactgct tcggcaaaag agactatcgc tcttgcagta tcgactttag
     6361 ataacccatt ctttgtgagc cttaaagacg gtgcacagaa aaaagcagat gaattaggct
     6421 acaaattagt ggtgcttgat tcccaaaatg acccggctaa agagctttcc aatgtggaag
     6481 acttaacggt gcgtggggca aaagtgttat tgattaaccc aaccgattcg gaagcggtcg
     6541 gaaatgcggt ggctattgca aatcgcaaca aaattccggt tattacactt gaccgtggtg
     6601 cagcaaaagg cgaagtggtt agccatatcg cttccgataa cgttgccggc ggcaaaatgg
     6661 cgggagattt cattgctcag aaattaggct caggggcgaa agtgattcaa ttagaaggca
     6721 ttgccggcac ttccgccgct cgtgaacgtg gtgaaggctt taaacaagcg attgaagcac
     6781 ataaattcaa tgtattagcc agtcaaccgg ctgattttga ccgcactaaa ggcttaaatg
     6841 tgactgaaaa cttgctctca agcaaagggg acgtacaagc tatttttgct caaaatgatg
     6901 aaatggcact aggagctttg cgtgcagtga gttcagcgaa gaaagaggtt gtaattgtgg
     6961 gctttgacgg cacagatgat ggcgtaaaag ccgttgaaag cggtaaactt gccgcaacga
     7021 ttgctcaaca acctgaactg attggctcat taggcgtaga aactgccgat aaagtgctaa
     7081 aaggcgaaaa agtggaagca aaaattccgg ttgatttaaa ggttatttca aaataattat
     7141 acttgaagat agcgttcgtc tctgacgaac gctttgaatt aataaaatag cactcgtcag
     7201 agactagtgc tatcagaatc ctagttttgt tgtactaggt aatttgaggg cttaatatga
     7261 aaaaactcac cgttctcggt agcattaacg ctgatcacgt gatttccgtt ccctattttg
     7321 ccaaaccggg ggaaacgctc accggacata gctgccacat tgcttatggc ggtaaagggg
     7381 caaatcaggc ggtggcggca gcacgtttgg gagctaaggt ttctttcatc ggttgtattg
     7441 gcagtgatga catcggcaaa gcaatgaaat cagcctttga gcaagatggc attgacactc
     7501 gctcgattaa aacgattccg aatgaaatga ccggcattgc aatgattcaa gtggcggaat
     7561 cgggcgagaa cagtattgtg atttcagccg gagcgaacgg tcatttggat gaaacggttg
     7621 tggcaaagtg tgcagccgaa atcacacagg cggattattt gctaatgcag ctagaaacac
     7681 cgttgccggc gattgtgcaa gcagcaaaat tggctcagca aaacggcacg aaagtaatat
     7741 taaaccctgc gcctgctcga gcgttacccg atgaactgtt aaacttactg gatatgatta
     7801 ccccaaatga aacggaagcg gaaatattaa ccggtgtgaa agttgttgat gaagccagtg
     7861 cgattcaagc cgcacaagtg tttcaccaaa agggcatcga aaaagtgttg attacacttg
     7921 gctcaaaagg ggtatttgta agcgaaaacg gtgtaggcaa aatcgttgca ggcttccgtg
     7981 ttcaagcggt ggataccact gccgcagggg atacttttaa cggagcatta gtgactgcaa
     8041 tgttagaaga taaaccgctg gatcaagcca ttcgttttgc tcacgcagcg gcagcgatta
     8101 gtgtgactcg caaaggggct caaccttcta ttccgacccg tcaggaaaca ctggattttc
     8161 taagccaaca agcggtgagt ttttaggaaa attttgcaaa tggcaacaat gaaggatatt
     8221 gcacggcttg cacaggtttc cacctcgacc gtttctcacg ttatcaacaa tagccgattt
     8281 gtcagcgagg aaattcggga aagagtgcag agggtggtga aagaactgaa ttacacgcct
     8341 tctgcattgg ctcgtagcct caaagtgaat gaaactaaaa ccatcggaat gctggtaacg
     8401 gcaaccggca atccgttttt tgcggaggtg atggcggggg tggagcaata ttgccagcaa
     8461 catcaatata acctgattat tgccactacc aacggtgaca ccgagcgttt gcaacaccat
     8521 ttgcaaatgc tgatgcaacg aaaagtagat ggcttgttac tgatgtgtgg cgataccaga
     8581 ttgaatgccg atgagagctt gaatattccg ctgccattgg tggtgttaga ctggtggttt
     8641 accgagctca atgcagataa aatctttgaa aattcaatat ccggcggcta tctcgcaaca
     8701 aaaaccttaa ttgaagcagg gcattctaag attgcgatta ttactggaaa cctaaaaaaa
     8761 tcattggcaa aaaatcgttt agaaggctac aaaaaagcac ttgccgaggc gaatattcca
     8821 ctcaatccaa actgggtgtt cgaaagccat tttgattttg ccggcggggt taatggaatg
     8881 aatgctttgc ttgcccaaag cgaaaagccg acagcggtat ttgcctgtag cgacaccatt
     8941 gctctagggg cttaccaagc aatctggcaa caaggtttac gaataccgca agatatttcg
     9001 attatcggct atgacgatat tgaactggca aaataccttt ccccaccgct gagtaccatt
     9061 agccagccca aagcggaact cgggcggctt gcggtggaaa ctttgctaaa acgaattcgt
     9121 tttaaatcca ctgattttca aaccataatg cttgaacctg aattagtttt aaggcattca
     9181 atccaaacaa taaacaaaaa cgctgaataa tgtgaagtta ttcagcgttt tttatccgat
     9241 ttcaattagc ctttttgctg ttccaaataa agcacggtgg cggcaactcg ggaatgcacg
     9301 tttaatttac gcagtaaatt gcggatatgc acttttacgg tttcttcgga aataaagagc
     9361 tgagccgcaa tttgtttgtt cgacataccg gttgcgagcc attgtaaaac atccagttca
     9421 cgatctgtta agcaacttaa aggatcattt tctggctggc ggttgagtaa atgttggcga
     9481 acggtttcgc ttaataccac ttcaccggca gccgctttac ggatattatc tagtagttcc
     9541 ggggtgtcgg tatcttttaa taaatagccg tccacaccag catccattaa tgcaaataca
     9601 tcggattgct cgtctgacac tgttaaaaca atgattctgg catctatacc ttgagcgcgc
     9661 aatgagcgta aagtatctag ccctgaaagc cctttcatat ttaaatccag aataatcaca
     9721 tccggctcaa gtcgtaatgc aagtttgata ccgtcggtgc cgttgcttgc ttcacccact
     9781 acactaaatt ggtgatctaa ttccaatagt tgacgcattc cctgacgcat taatgggtgg
     9841 tcgtcaatga gtaaaatttg agttggagct gtcatttatt tctcctttcc tttctcttaa
     9901 tcggttaatt ttgcaattat taattcaaaa tagcaagttt agggatttac taaatgccgc
     9961 ttttttgatc ttagctaatt tttaactaaa aaagaaattg caaaactttg caagaaaaag
    10021 accgcttgtt cggctataat tactgccaat ttttatttca agtgtgaaaa gaatgacaaa
    10081 tcaaacaacc tattttgcca cggcagcccg tggttttgag gaaatactaa aaaccgaact
    10141 ggagcagatt tgtgcggcag aatgcaaagt cgctcaaggc ggtgtgcatt ttaccaccac
    10201 gcaaaaaggg gcttatcagg cattattaca cagccgttta gcctctcgga tcttactgcc
    10261 gctcatcagc accaaaattt ttagtgatag cgatttatat gcttccatcg tgtcatttaa
    10321 ctgggcggat ttattcgatc cccgtgatac cttttacatt gatttcagcg gcactaaccg
    10381 agaaatccgc aacacccaat ttggggcaat gcgagtgaaa gacggcattg tggattactt
    10441 tgaacgcaaa ggttttgccc gcccaacagt agataaagat aatccggatg ttcgcattca
    10501 tgtttatttg gatcgtgaaa atgttgtggt ttcgcttgat ttaagtggag atgccttaca
    10561 tattcggggc tatcgggaag aaaccggtaa agctccgttg cgtgaaacat tggcggcagc
    10621 cattattttg cgttccggct ggaaagtcgg cacgccattg gttgatccga tgtgtggttc
    10681 aggcacgtta ctgattgaag cagcacaaat ggcagcgaat attgcccctc aacttcaccg
    10741 taaacattgg ggctttaatg cgtggaaagg gcatcaacaa gcgatgtgga aagccgtgtt
    10801 agatgaggca ttccgaaatg ttgaattggg tgcggtaggg gagaattgca attcgtccct
    10861 acaaaaaatg ttcttcggtt ttgatctcga tcatcgtgtg ctgactaaag caaagcaaaa
    10921 tgcgaaaaat gcaggggtag atcatctcat tcaatggcaa caaggtgatg tggctgcgtt
    10981 aaaaaatccg attccggaaa aaatcggcac ggtggtgtgt aacccccctt atggtgaacg
    11041 tttaggcaca acgccggcgt taattgctct ttattcggtg ttcgggcaac gcctaaaaca
    11101 gcaatttgcc ggttggaatg cctcaatttt tagcggcgag cctgaattgt taaattgcct
    11161 gcgtttacgt tcagcccgtc aattcaaagc gaaaaacggt ccgttggatt gtgtgcagaa
    11221 aaattactcc atcagcgagc ataacaagcg gtcagattta gatgaaaatt tacaatttga
    11281 acagaatgct caagtcgctc cggattttgc aaatcgctta accaaaaata tcaaaaagat
    11341 cgaaaaatgg gcgaaacaac aaggcattga tgcctaccgt ttatacgatg ccgatctgcc
    11401 tgaatataat ttagcggtgg acagatatgg cgaccacatt gttgtgcagg aataccaagc
    11461 cccgaaaaat attgatgagc aaaaagcccg ccaacgcttg ttagatgcag tctctgctac
    11521 gctttatgtg acaggtgttg aaactaataa attagtgttg aaagttcgcc aaaaacaaaa
    11581 aggcacgaat cagtacgaaa aacttgccaa taaaggcgag tatttctatg tgaacgagta
    11641 tggggcgaaa ctgtgggtga atttaaccga ttacttggat acgggtttgt tcctagacca
    11701 tcgcttaacc cgtaaaatgg tgggcgaaat ggcaaaaggc aaaacattcc tgaatctgtt
    11761 tgcctacacg ggttcagcta cggttcacgc tgctcttaat ggggcaaaat cgaccactac
    11821 agtggatatg tcgaacacct atttgaactg ggcggagcaa aatttagagc tgaataattt
    11881 atcacttcgc catcatcgtt tgttccaagc cgattgcttg caatggctgg cagaatgccg
    11941 tgagcgattt gagctgattt ttgtcgatcc gccgactttc tccaactcaa aacgaatgga
    12001 aaacagttgg gacgtgcaac gagaccatat tgagttaatg aaacagctta aacgtatttt
    12061 aaccgctgat ggtaccattg tgttctcgaa caataagcgt ggctttaaaa tggattttga
    12121 cggtttggca gcattaggct taacggcgga aaatatttcg cataaaacct taccgttgga
    12181 ttttgaacgc aatccgcaaa tccataattg ttggattgtg aagaatgtat agataatacc
    12241 ctcgaccctt gtgggagagg gatagatttt tcttcgttca gaagaaaaat cagggagagg
    12301 gtaagaagtt actgatgaaa gagttatttc cccctctctc tgaaaaatat ttctgaacga
    12361 aatatttttc ggtctctctc ccacaagggg agagagtaag gctaaaaaat gttagatatt
    12421 gttttatacg aacctgaaat tccgcaaaac agcggaaata ttatccgcct ttgtgccaac
    12481 tgtggctttc gtttgcatat gattgaaccg ttcggctttg gttgggacga taaaaagctc
    12541 cgccgttcgg ggctggatta tcacgaattt gtggatattc aaaaatataa aaattttgaa
    12601 gatttccttg agcgtgctaa gcctaaacgc ttgttcgcct taaccaccag aggggagcag
    12661 aaccacagtg atgtgaaata tgaacttggc gattttttaa tgttcgggcc ggaaagcaga
    12721 ggcattccaa agccattatt agcggaaatg ccgatgtcgc aaaaaatccg cattccgatg
    12781 tgcaaagaca gccgcagtat gaatttatct aactcggtgg cggtggttgt gtatgaggcg
    12841 tggcgacaat tcggctacca aaatgcggta gcggcacaat ctatttaact tgcaagcggt
    12901 gtgattttgg ctattttttg caagtttgtg gtcaaggttg ggggaggctc gaccttgact
    12961 aattaagaac atctattgtg tctattcttc ttcattttta gctggaggta aaaaattctc
    13021 tccggtaaca actgatttac ctgttttatt ctccaattcc tgacgggcat ttttggcaat
    13081 attgccacct tgttttcctg cttgggcatt ttcatcaacc ccaactgcct gcatactttc
    13141 tgcaatttgc cgactggaaa gttcagcaag tgctgtaaat aacaattcag cttcgctcat
    13201 atgatctcgc agattttggc tttttaaacc tttaagcgat ttatgctttt gtacagatag
    13261 tccgctccat tcttgatgaa tcacattggt taaaaatgca aaatcttgtg gctgttcaac
    13321 ccctgacgat ttccaataat cggtcagttt atttcgggtt tcttgtccca tcattctttg
    13381 ctgaatccat ttttcacttc gtcccatctt ctgccaattc tcccttgctc gatctagact
    13441 ttgacttgga tcgtttattt cctgtaagcg ttcataacct acttttgcta accattgttt
    13501 gaagggctct gctttcggac tagggataga ttgaataagt cggaaaagtt gttcggtatc
    13561 tgctacatca gtcaaacgca tttttccgtc agcagagggc attttcaacc cgtgacaatt
    13621 tgtcacggtt tcattgcctt ctgcctttag cctctgtttt agcttacgcc aataagcaga
    13681 gggatctagg ctttcggtta aaatagcaat cacatcaata atagaaaaat accatttatc
    13741 tttttcttca t
//
LOCUS       DANLXB010000061        13696 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLXB010000061 DANLXB010000000
VERSION     DANLXB010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13696
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            120..1109
                     /gene="dusB"
                     /locus_tag="PXD41_001153"
     CDS             120..1109
                     /gene="dusB"
                     /locus_tag="PXD41_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL6288696.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            1114..1410
                     /gene="fis"
                     /locus_tag="PXD41_001154"
     CDS             1114..1410
                     /gene="fis"
                     /locus_tag="PXD41_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL6288697.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(1515..4301)
                     /locus_tag="PXD41_001155"
     CDS             complement(1515..4301)
                     /locus_tag="PXD41_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL6288698.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRDHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(4395..6146)
                     /locus_tag="PXD41_001156"
     CDS             complement(4395..6146)
                     /locus_tag="PXD41_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6288699.1"
                     /translation="MFKLKSSFVLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKP
                     SLQDDNSNARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDL
                     TKIPYEEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILR
                     TGAHGYVYYLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPEN
                     SYDINFDDSEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKG
                     NRFSGKANAKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAK
                     KDDSESAFDAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLV
                     TRTIDDKTYRVSVCCNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRG
                     TWDGVMYSKSGSAGAGSPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEG
                     NLKGNGFAGTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAET
                     DKDRVSITFGGKRQIEK"
     gene            complement(6567..7214)
                     /gene="rnt"
                     /locus_tag="PXD41_001157"
     CDS             complement(6567..7214)
                     /gene="rnt"
                     /locus_tag="PXD41_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL6288700.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            complement(7299..7706)
                     /gene="gloA"
                     /locus_tag="PXD41_001158"
     CDS             complement(7299..7706)
                     /gene="gloA"
                     /locus_tag="PXD41_001158"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL6288701.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            7796..8611
                     /locus_tag="PXD41_001159"
     CDS             7796..8611
                     /locus_tag="PXD41_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288702.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            8615..9361
                     /locus_tag="PXD41_001160"
     CDS             8615..9361
                     /locus_tag="PXD41_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288703.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            9547..11322
                     /locus_tag="PXD41_001161"
     CDS             9547..11322
                     /locus_tag="PXD41_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL6288704.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            11340..11534
                     /locus_tag="PXD41_001162"
     CDS             11340..11534
                     /locus_tag="PXD41_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL6288705.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(11531..12004)
                     /gene="folK"
                     /locus_tag="PXD41_001163"
     CDS             complement(11531..12004)
                     /gene="folK"
                     /locus_tag="PXD41_001163"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL6288706.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(12207..13538)
                     /gene="pcnB"
                     /locus_tag="PXD41_001164"
     CDS             complement(12207..13538)
                     /gene="pcnB"
                     /locus_tag="PXD41_001164"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL6288707.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
BASE COUNT         4069 a         2936 c         2534 g         4157 t
ORIGIN      
        1 tcaaatcagt actaaactga tccataagct attataagaa agtacggtat ttaccgtact
       61 ttttatttgg atatccctct ggttaaaatt acttcaaatt tgttaataaa aggttaaaaa
      121 tgcaaatagg acaatatgca atcaaaaatc gtattttcct tgcacctatg gctggaatca
      181 cagatcagcc ttttcgccgc ttatgtagcc aacttggagc aggtttaaca ttttcagaga
      241 tgatgtctac caatcctgat gtatggcata ctgagaaatc acgattgcgg ttagcacacc
      301 acgatgaaat aggcttaaat gccgtacaaa ttgcaggttc tgatcctgtt gaaatggcaa
      361 aggctgcaaa gataaatgtt gagtatggtg ccgatattat tgatattaat atgggttgcc
      421 cggcaaaaaa ggtgaataaa aatatggcag gctctgctct tttacgtaac cccaaattag
      481 tcgctcaaat attagattct gtagtcaatg ccgttgatgt ccctgtgaca ctaaaaatta
      541 gaacaggttg ggatcaggaa aatagaaatt gtctgcaaat tgcgaaaatt gcagaacaag
      601 ccggcataaa agctctcact attcacgggc gtactcgaag ctgtttattt aatggcgaag
      661 ctgaatatga aagtattaag gcagtaaaag aagcaatttc tatcccagtg atagcaaacg
      721 gagacattga ctctgcggaa aaagcaaagt ttgttctcga ctataccaaa gccgatgcaa
      781 tcatgattgg gcgcgctagc tttggaaatc cttggatatt taaggaaatt aatgattttt
      841 ttgaaactgg attatcttca ccattatcaa ttgataaaaa ataccaatta atgtttaaac
      901 atattgagga tttgcaccaa ttttatggtg aagaaaaagg ttatcgtatt gcacgaaaac
      961 atgttggttg gtataccgaa aaattaaatc cggaatcaaa ttttaaacgc acttttaata
     1021 cactaagttc cacaaaagag caactttatg cattagaaga ttttgttaaa tcgattcatt
     1081 tagaatctca attaagaaaa gttggataaa aaaatgttag agcaacaacc tacacaaaac
     1141 ccattaacag taacaatgtt aaatgcacaa gcgcagcagg ttaataaacc acttcgcgat
     1201 aatgtgaaag cagcattaaa aaactattta tctcaattaa atggtgaaga tccaacagaa
     1261 ttatacgaat tagtattatc tgaaatcgaa cacccaatgt tagatatggt gatgcaatat
     1321 actcgcggca atcaaactcg tgcagcaaca atgctaggca ttaaccgtgg cacattacgc
     1381 aaaaaattaa aaaaatacgg tatgggttaa tctaaccgac cgttaaaaca cgattttaat
     1441 tcgtatgtaa ttagttagag ccaacaaaaa acgctgaata tactattcag cgtttttcta
     1501 ttttattttg ccgtctaaaa cttcatttca aatgctaaac tgaaatttct ccccggagcg
     1561 gcaaatcgag tgtaattgct accccggtct tggtttactg cattcacacc ggattggcgc
     1621 actgattccc aagtggaata tttacgatta gtcacattat aaattcctcc acgtaaggtg
     1681 tagtttttat aattgatgta accggtaata tcatgggtgt accaagaacc ggtcagtttg
     1741 ccacctaaat caacgcgatg tatgccgtga tgacgtgtgc ctgccacctc atcggcgttt
     1801 ttggctttag aataggtggt agtaatgcca attccccatt tttcttctgg gtgatcgtag
     1861 ccgaatccaa gcacatagcg tgctggctga atcgcatcta gaataggatc gtttacgcta
     1921 tcgagtcttg agtcggttag tttccgctct tttactttta cacggttata agcaactgat
     1981 gaataaaaac catctggcag catagataaa ataccgtgta agtcaaattt agcgactaaa
     2041 tttatcccgt ttagtgctac atcttgaata ttatggtagt tatagaaaca gtgtgatttt
     2101 tgtattattc ttttacatgc tgtcgcaatc atatttttat agttattacg gaaatagctc
     2161 acatcaaggt aaccaaattg acctttaaag ctaactccaa tctcatgatt agtcgatttt
     2221 tctggctcta actggtggct acgttgcgcg cgttgcacat attcgttatc tttaagccca
     2281 atatgatcac gtttaccata aagttcatag aatgcaggca ctctaaaacc gtttgaaatg
     2341 cgataagaaa gcgatacaaa ctctgttggt ttaagcgtaa tcccaccatt ccaagaccaa
     2401 tttcgataag ttcggctaag tgtccacgga tcatcagatt taaatcgatg ttgatcaaaa
     2461 cgcaccccta atcccaaatc cacatactcg cttatcacta gatcgcggaa gctaacaaaa
     2521 tggctatcgc ctttaatttt acgcggttca cagtttaaga tgtcgccgcg tgtattatta
     2581 cacaaagata ccgtttcaat actgcgtgga tcgcggcgat aaatatatgg attatctaaa
     2641 cgccctctac cgcggtagct ggtataaccg cctttggtat attgggcagt catatcccca
     2701 tgatccataa gcgaattaaa tcgatcaaag cccaacccta aattcagttt gtgggtttgc
     2761 ttaaatacgc cttgaccagc atttagcgct ttatcaaatt ctaaatgaat gacacgatgc
     2821 ttttcttggt aattattacg ctcagttcga tacatagacc aagatttatc caaagtcggg
     2881 cggcaatttt tatctaccac aggataatcg ctacaatgca agcgatgtag ccggctatat
     2941 agttcaatat cttgtttatc cgcactgagt ttaatgctat ccaaccagcg attattctct
     3001 ggtttatatt tataggtgaa tcctaaacga cgtttgtggt gacgttcatc aaaaaacttc
     3061 acatggctat agcgcaaccc ataagggatc cttggcttga acactaagcc atctaaaata
     3121 ttatcccctt cataaacata gttcctaagt gataagttaa tatcgtcttt tgtatagtaa
     3181 gctggcgttt gcatatcacg gatatcgtag cgttgttttg tatcttctaa gattgcgcca
     3241 agataatgag acgagttaaa gtgatagcca aacttcataa aaacagaatt actcttgtaa
     3301 tctaaagggt ttggtgcaat gcgatcttta ccggtatatt cttgggctga gagctgctca
     3361 gtgcgataag gaatctgctc aagctgtttg cgctcttcag gcgtatattc cggaaatgtt
     3421 ctcactggga aattatcgcg gttcaactta acccttgcac gaggagtaca atctaatgtt
     3481 gggcaagtat cttccacaat aaaaaaagat cctccaggag cattctgtgc ggaatttggg
     3541 taaagatcgt agcgattttc aaagccggtt atacgccgaa tattatgttt taatttattt
     3601 gcctcggaat gaattttggt ctctttaccg tgtcggtgag ttgcaataac aagtgcttca
     3661 aaaccacccg cctcaccagc cgctgcgata gactgtaaaa aatggctatt tttgctggca
     3721 taagaggtct tactatctaa gccccaatgc tgcccctctt taataatatc ctgcgcatct
     3781 ttagtacgaa aaccaatagc accacctagc gcaccagagc catattccgc agaacttgct
     3841 cctttgctta actcaattga acgaatgttt tcatactcaa tctcattaat tgcaccacca
     3901 ttagcatctg aacctagcgt atgataatgc tgcgcttgtg gtagcccatc aacaagtaag
     3961 ctgacacggt ttttatctac acctcgaatg gcatagccac tacttgcacc gcgaccttgt
     4021 tccaccaccg aaataccagg gtcatagcga gttaaatcac gaataccaag aatttgattt
     4081 ttactcattt cgtgataatt tttcactact ttccccaagc cagttacttc gttttgacgt
     4141 tcgtgagcat aatggctctc tgtcacaata acttcatcca gaacagctag atcgttattt
     4201 tcttctattt ttttattttc agtcgcagca ccgtatgaat gagaaagagc aaataacact
     4261 gttaaggcaa caggtgaata gcgaaaatga tgatatttca ttatcattag atagggtctc
     4321 ctttatttaa attttgcaaa tttttataaa aaattgcccg cttgctatct acaaccagca
     4381 aaggggaatt atgattattt ttctatttga cgttttccgc cgaatgtaat actgactcta
     4441 tctttatccg tttctgcact atgtacaata ccacctaatt ccgtcgcctt agggccataa
     4501 aagccccctt caaattgagt atttatatgc actaccgtgc caccattcgt acttttcgga
     4561 tcaagattaa aaccagaatt gcccgttttg gctgtgcctg caaaaccatt ccctttcaga
     4621 ttgccttcaa gtgtcagcat tgggcgttct tcaacaccat cattagcaat cagcttgcca
     4681 ttaatttttt tattgacaaa atctacatcg aatagtgaac gagtaccact ttcgctgtta
     4741 cttggcgatc cagcccctgc cgagccagat ttactgtaca ttaccccgtc ccaagtacct
     4801 cgatatttta ctgtccctgt tggcaaatct gccacagctg tacgttctcc tactaaatat
     4861 tggtgagcag tatcactatt atttccctcg ctataagtcc caaatttgac ataatctaaa
     4921 ttattacagc agactgaaac tcgatacgtt ttatcatcaa tagtacgggt aaccaaatca
     4981 tcaaatttca tctcggcaaa gctttttttg ccttccgcaa taagtggaat ctgcttattg
     5041 ttaataatca aatgtgtcgc attcccgaaa gtatccatct cagatttatt taaatcttta
     5101 agtttaattt tgaaagcatc aaaggcagat tcactatcat cttttttagc atctcgtttg
     5161 ccagcaaaaa caacaaatac cgacttatca tcagctaaga atttaccggc aagttcttga
     5221 gccttcccac caaaaaatcc accttcaagt gtcgtagagc ttttaccaaa ataaggatca
     5281 tcggtatttt ttgcgtttgc tttaccagaa aagcgattac ctttaatttt tgcatcaata
     5341 tcgtaaattg ttgtaatttt ttgctctttg ctacgactaa catacccatt acgaaccaat
     5401 gttccagtta aagttttatt agcaaaatca gccgtaaatt ctcctgtatg ccccattggt
     5461 ttttcagaat catcaaaatt aatatcgtaa ctattttccg gtgtggcgcc aatattgatg
     5521 cctgcggaat tagaaaaata tttactatct ctcccttttc tcgcatcggt agtaaaatcc
     5581 caatatcctt tataagtagc tttttgagta ggtattgctt ttgccggctc tatacctaaa
     5641 tagtaaacat acccatgtgc acctgttctc aaaatttctt taggctttat ttcaggtttt
     5701 gcaccagaat gcagaacata gccagaacga acaaaattaa aatctctagt atacaactta
     5761 tgatttctat catgagtatg gctaaatcca tcagcactac taccgtacgc tttaacctct
     5821 tcttcatacg gaatttttgt cagatctcca gtaatctctt ttatatcacc aataggggct
     5881 acatcttcct tcccctgcgg aaagagatta cgacgcggaa ttttggctga aaaaccaaac
     5941 cccggctgca ataaagcttc agtttcagaa gcgcttactg tacgtcttgc gttactatta
     6001 tcatcttgta aacttggctt tttgggggta gtttgcgttt gagattcaac tttggcagat
     6061 tgaacatcaa agcttccacc atttgaggaa caagcagcaa gtagcgccgc attaagcagt
     6121 acaaaactac ttttaagttt aaacataatg tctcctttta atttataaaa tgataatcat
     6181 tataatttat tatataaact aatgtaaagg tttgaacttt attagtttca ggatcatgtt
     6241 aatcatttca aggtggaaac gcttgttttt agattagata aaaaataagg agggtcgaaa
     6301 tagcgggtat acagaaagtg cttatagcca aaaaatagtc tattgttatt gaatacaagc
     6361 ggtctatttt gtcacatttt tgccaaattt ggttaaaaaa ccaaccgctt gtaatcttaa
     6421 ctgaagatag atagtttttt attttttcta caactctaca gggctggatt tattgcagaa
     6481 tggtacttgc cactaactat catcactccc aggataattt atagaaacaa tacgagaaat
     6541 tgtgttaata aatgaaatga ataacgttaa tccgataatg gtgggaaacc acctaaatct
     6601 tttaaacgat tgaccattgc acagaaaagt tctgccgtgc gctcggtatc atacaacgca
     6661 gaatgcgctt gcttaccgtc aaacgggatt tttgccacct ggcaggcttt taccaacacg
     6721 gtttgcccat acataaaacc ggcaagggtg gcggtgtcaa acatcgcgaa agggtgaaag
     6781 ggatctcgct tggcattaat tcgtttaatc gcagcctgta aaaagccctg atcgaacgct
     6841 gcattgtggg caacaatcac cgcccgttgg cagccttgct ccttcattgc tttgcgaacc
     6901 attttgaaca tttccggaat cgcaatattc tccgcaaccg ctcctcttag agggttgtca
     6961 atatcaatgc cgttgaattt taatgactca gggttaatat tcgccccttc aaatggcgca
     7021 atatgaaaat ggcattgttg atccggcact agataacctt gctcgtccat ttttaaagta
     7081 attgccgcca attccaataa ggcatcagtt tgggcattta agcctgctgt ttccacatca
     7141 atcacaaccg gtaaatagcc acgaaaacga tgctttaata atttataatc tatttgttcc
     7201 gttgtctgtt ccatttatct atcaacctaa aatacaagcg gtctgatttg caaaattttt
     7261 tacaaatccg accgcttgaa tattcatatt cgcaaaaatt agtttcctaa cgctgctttc
     7321 gcatctttat tctcaataaa ttcgatttta taaccgtccg gatcttcagc aaaggcaatc
     7381 acagttgttc cacccaatac cgggcccggc tcacgggtaa ttttaccgcc tgccgcacgc
     7441 acatcttcaa tggttttgta aatatcatct acgcctaacg caatatggcc ataagccgtg
     7501 cctagctcat atttatccac accccagtta taagtcagct caatcaccgc actttcgctt
     7561 tcatcggcat agcctaaaaa tgctaacgaa tacttatact gctcgttctc gcttctacgt
     7621 aacagacgca tacctaacac atcggtataa aacttaattg agcgctctaa atctccaact
     7681 cgtaacattg tatgtaaaat tcgcatattt tcttccccct gaagttaaaa aacgacccct
     7741 attatggcat aatcttggct taaaatcatt ttctttatac cttttgggat tatctatggc
     7801 tcacgatcac gattcgccgt caaaacttga aatttcaacc cacgctgcac tgccaatggt
     7861 attaatgctg tttattgaaa tggctcttaa cttctactct gcaccgaaaa attcaatttt
     7921 tatttctcct tacttattgg cgtttttcgt gacctcatta atcagttttt tagtgctatg
     7981 gaaaggcgaa atctgccgag ggcaagccag ccgtttaagc tttattttac cctttttact
     8041 tattttcgcc gtagggaatt tcctttattc cataggcttt acgccaaagc ataacccaat
     8101 ggcggtggca agcattgctg cagtttttgc ctgcttaatc tacttccgcc tgccggaaga
     8161 tcaaacctta tataacacat tgatgtattg tggtttggct atatcaagta ttggtattat
     8221 ccaatattta gccatttatt ggtttgaact gccttcattg tttaacggga ttcgagccaa
     8281 caatttcgcc caagtgctgt taggcatttt attagccggc tggtatttaa tgttagcgaa
     8341 aagccgttta gatgttttcc tcaaactgtt ggtgaaaacc gcccttgtgg tgctgattct
     8401 caattattgc tggacagctt ttgtgcttta tcaacatcta caaattatgc cggatatgcc
     8461 attgctttca tttatcatct attttgcagc acaatttgtg attttattga tgttggcgtg
     8521 gttattactt ggaaaaaaca tcaaaaatcc gaccgcttgg acagttgcta cgctgttagc
     8581 gattttatac cctttcgcta atgtagtctg atttatgaaa cgggcattaa aatttttcgg
     8641 cattgcaacc gttctatctg ttgtggcaat ctactatttt ttaatgccca gccactatct
     8701 tgccacgccg attaactgga ttttgccgaa agcgtggaaa gttcaactcc cacaaggctt
     8761 aaacctgaat tggcaaggct catcacttgc tcaatttcaa ctctcttatc gagattgccc
     8821 gctactaagt gccgataaaa ccgatttggg ttggattgag aaaaaccatc tttctgtcga
     8881 taaattggat attgattacc gctgccttgc cttgtttcca caaaatgaac acagcaattc
     8941 cgacacttca ctcaacgcat tgctggcggt cattcctgat ggcgaagcga ctatccacgc
     9001 ccttaactgg aaaaatttgc ctaccgattt caacccaaga cttcagcggc tttttgagca
     9061 aacagctatt aaactctcac tttcaaaagg tgaaattcag gcaactgccg ctcaacaagc
     9121 ggtcaaattt gcagcaaatt ttgcaaatgg gcggttgaat gccgatttat catatcaacc
     9181 gaatgaaaaa gaacagcata atcttaggat ttcagcagaa attgaggaca attttaccca
     9241 actgccgccc actatttccg ctgaatatga ttggcaatta tcttatgaaa tcatcgccaa
     9301 taaagccttg caaaagggcg ctctattctc agttggcaaa aaaatgccgc acaaaagtta
     9361 gaaggcaact ggcaggttga acttgccgaa agtgaaaata acaaactgga tttccctttt
     9421 ctgtttgatg gggaaagcct agaaattcaa caagggcggt ttgattggca ctttacccaa
     9481 caatttccac tgcaagggtt tgttagcacc aagctcacac cgaaatcatt caaccaaaac
     9541 ggctttttgc cactcaaaac ggcgattcgt atcagcctgc tttcccaaaa cagttggggt
     9601 aaaggcaata ttgtaatctc caattcagac ggagaaataa ccgaaaaagg gctgaattta
     9661 ccgcttcgtt tgacgggtaa tatcaaacac ggcaatttta ttctttacag tagcgtgcca
     9721 ctggattttc aaggtaattt tgacgattta agcgtaaaat ttttgcctag ctccctactt
     9781 cgtttgaccg gaaaagagcg gtatttaacc attgaagatt tacgttttcc acttgccgga
     9841 attaaaattg acaagcacgg tattcacgga cgactgcacg caattttaag agggcaaagc
     9901 cctgatttta acaatatcga gttccattta gacggacaag cacaaaattt taaggctgga
     9961 gccttagatt ttttccaaga tcctaaagat gctaacgcag taaaagacag ttggaaatgg
    10021 cgaatttggg gagcatctat cctcaaagcc ttcaacagta aagtgaattt aagcggcaga
    10081 gggcaatggc ataaacagct tgtgcggttg gaagaactca aaggcgattt agccaccgta
    10141 aagttagcag atacaaccat ttctaaaatc acgcttaaca atacgcaagc tattcgattt
    10201 aatgtcaaaa aattcaccct tgacggagcg gtaatgttgc aatcacctga gattgccttc
    10261 agttatggcg gtgtgctacc caaaccacga gtgaatctcg cctttgatgg tgaagtcgaa
    10321 aaactacgtt ttaaaggagc ggtgaatacc accgaactcg gcccactcaa actgttcgcc
    10381 cgccgccaat taagccaaga tgccagccaa attatcggca aactttattg gccggagcaa
    10441 tctgctcaag gcttccagcc gctttttccg tttcgtagcc aatgggtgat caacaacggt
    10501 acaattcggg gcgaaacggc gtttagtgcc ggcagtaaaa acgggctgat tgccggtggg
    10561 catttagcca ttcgtaacgg cggtttatct ttacctaatg gcgaagcaaa agggattgaa
    10621 ttttcgcttc cctaccgcta ccaaaacgga cgctttcatt tcggagccaa aaaaccgctt
    10681 gatgtaaaaa ttgcccaaat caaactgggg gatttagcat tagataacgc ttcaatgaaa
    10741 ctcaacggtt actaccctta taccaaagct aagccattga atttaaatca attatccttt
    10801 gatttgtttg gcggtaaact gaatgtaaaa cgctttgcct taccacaaac cgaactggct
    10861 tacctgaatt tagagcggat tgactttgag caaattttgc aatttatgca atatcagcaa
    10921 attgatctca aaggcaaagc caacgctatc ttgccgtttt ggttaagcgg aaaaccttgc
    10981 tatatttgcg atggcttact gacacaggcg gaaacttcct atttaacctt tacccctgaa
    11041 ttgttgtcag aaatgcagaa aagtggttac accgagcaaa ttttgttaca tttagtagat
    11101 aaaagcacga ttaacgattt tcgcagtctg attaatgtcg ggccgaaagg cgatttagta
    11161 ttagacggaa aattaaaatt atcttccaat caaaataaat caaaagtgaa tttaaactat
    11221 aatcaccgag aaaatctgtt tgatttgtgg cacttaatta actatggctc acaatttgaa
    11281 caaaaattag aaaattacct ctatcaaaaa ctggaacgat gataaagaat ggaataaata
    11341 tgaaaccggc cacattttat tttgcaatat ttttactgaa tttgaccgct tgtacgccga
    11401 aagtacagct tgaaacgcca agtgaaggca ttacgattaa tatgaatgtg gtcgttgatc
    11461 accgcattga tgtgaagatg gacgagaaat cccgagcggt gatcaccaaa agtgagaaca
    11521 aaacgaaaaa ttagctgaag ataatcattt gatgatcttt aaattgtgca taaatatcgg
    11581 ctaatttttc ccctgtcggt agtactaaat caggcgttaa atcaaacatc ggcacaatca
    11641 caaattcccg atttttcatc tcgatatgcg gcacgttcaa acgctcggtt tgaatttgct
    11701 gattgccgta caaaataata tccagatcta aagttctctc cccccaacgg cgtacacgca
    11761 ctcttccctg ctcattttca atgctttgca atttatccag caatgcagtg ggcgataggt
    11821 cggtactaaa ttttgctacc gcattgacat aatcaggctg atcttgcggt ccgacaggct
    11881 ttgagccgta gaacgggctg atttcaaact catttgcaaa tttttttaat ttttcgaccg
    11941 cttgtttaag ctgctcaagc ggattctcaa ggtttgatcc taaggcgata tagacggttt
    12001 gcataaaata tacttacaaa tataacaata aactctctcc ccttgtggga gagagaccgc
    12061 ttatgagcgt tcagcgaaat aagcagagag aggggacaag cggtaacttt tattaaattt
    12121 tttacacatt tcccctctcc ctgatttttc ttctgaacga agaaaaatcg ctccctctcc
    12181 cacaagggga gagggaaata tattaattat ccatttactt tcggtttttt cttaaaggtt
    12241 ctacggcggc gtgttttctt tttctcgcta ggcacattgc ctaaatgacg aaccgatttc
    12301 agcaattcag tacgctgacc ttcattgcta aattggtatt cgtgccacca agcggaaagt
    12361 tcgaccaaat cgccgccttc aatttctgca cgcatcacta ataaatcaaa ccctgcacgg
    12421 aatttgacgt gttcaagggt ttgttgcggt cggttgccac ttcgtttcat catctgaaat
    12481 tgcaatgccc aaatatctcg aatgactgaa gtgtgtctgc ggtgcaacgc aatcgcgttg
    12541 caactttccg ccagcacatc atttgctgcc agcatcattg catcgtagct gttgaagcca
    12601 ccttcgtttt taagctgctc cattttctcc cggagcggat accaaagtag tgcagcaaat
    12661 aaaaacgcag gatttaccgg taatttatcg gcaattcgct catcagttga atttaacgct
    12721 ttggtaatca ttctttcggc ataggaatca cctttggcag taaaaaatgc cggcaatacc
    12781 ggaaacaaga attgccatag ttcatattca cgcaaaagct gataagtttt cagccctgca
    12841 ccggtttgta ataatttgag tgattcgtca aacaaacggg ctgccggaat gttggttaac
    12901 aacaccgcca tatcccgaat tggggaggcc gtggctttat ccaagaacat atccaacttc
    12961 gccataaaac gaacggctcg caacattctc accggatctt cttggtaacg aatagtaggc
    13021 tctccgataa gcgaaagttt acctgctcgt aagtcttcaa taccgttgaa gaaatcaaaa
    13081 ataagattgc gttttatatc gtaatataag gcgtttacgg tgaaatcacg gcgctctgca
    13141 tcttcacgga gcgtgccgta aacattatca cgcagtagca ttccttcatc gctgacttta
    13201 gaaattttgt cattgcgatg agattcgtgt cctgcacgga aagtcgccac ttcaaaaatt
    13261 tcacgcccgt aaacaatgtg tgccaaacgg aaacgacgtc cgattaatcg gcattgccta
    13321 ccaaaaatac gctgaatttc ttcaggtctc gcattagtcg caatatcgaa atctttaggc
    13381 tttttctcca agagtagatc tcgaatacag ccacccacaa tataagcttc ataaccggca
    13441 atctgcaatt tatcgacaat cgaaatcgca tttttaggaa aatccttcgg gctaattcta
    13501 tattggctgg cattcaccgc aaatttcttg tgtaacaaat gggagggagg attatcttgt
    13561 tgtttcttcc cacctctata agtcttttgg tccgttaagt tcggggctgg gcgtttagaa
    13621 cgggaagttt tgggttctct ttccgctctt ttttcactct ctaccttttc atttttctga
    13681 gccgactttt taggct
//
LOCUS       DANLXB010000062        13649 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLXB010000062 DANLXB010000000
VERSION     DANLXB010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13649
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..895)
                     /locus_tag="PXD41_001165"
     CDS             complement(<1..895)
                     /locus_tag="PXD41_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288708.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXD41_001166"
     CDS             complement(895..1074)
                     /locus_tag="PXD41_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL6288709.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXD41_001167"
     CDS             complement(1075..1716)
                     /locus_tag="PXD41_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL6288710.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            complement(1713..2138)
                     /locus_tag="PXD41_001168"
     CDS             complement(1713..2138)
                     /locus_tag="PXD41_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6288711.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXD41_001169"
     CDS             complement(2138..2479)
                     /locus_tag="PXD41_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288712.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXD41_001170"
     CDS             complement(2527..3444)
                     /locus_tag="PXD41_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL6288713.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXD41_001171"
     CDS             complement(3444..4514)
                     /locus_tag="PXD41_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL6288714.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4773..5189)
                     /locus_tag="PXD41_001172"
     CDS             complement(4773..5189)
                     /locus_tag="PXD41_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6288715.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5340..6639)
                     /locus_tag="PXD41_001173"
                     /pseudo
     CDS             complement(5340..6639)
                     /locus_tag="PXD41_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6626..8251)
                     /locus_tag="PXD41_001174"
     CDS             complement(6626..8251)
                     /locus_tag="PXD41_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL6288716.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXD41_001175"
     CDS             complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXD41_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL6288717.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9949..10095)
                     /locus_tag="PXD41_001176"
     CDS             complement(9949..10095)
                     /locus_tag="PXD41_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288718.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10095..10595)
                     /locus_tag="PXD41_001177"
     CDS             complement(10095..10595)
                     /locus_tag="PXD41_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL6288719.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10603..10857)
                     /locus_tag="PXD41_001178"
     CDS             complement(10603..10857)
                     /locus_tag="PXD41_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288720.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10857..11114)
                     /locus_tag="PXD41_001179"
     CDS             complement(10857..11114)
                     /locus_tag="PXD41_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288721.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11107..11262)
                     /locus_tag="PXD41_001180"
     CDS             complement(11107..11262)
                     /locus_tag="PXD41_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288722.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11277..11636)
                     /locus_tag="PXD41_001181"
     CDS             complement(11277..11636)
                     /locus_tag="PXD41_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6288723.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11633..11878)
                     /locus_tag="PXD41_001182"
     CDS             complement(11633..11878)
                     /locus_tag="PXD41_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6288724.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11881..12414)
                     /locus_tag="PXD41_001183"
     CDS             complement(11881..12414)
                     /locus_tag="PXD41_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL6288725.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12500..12925)
                     /locus_tag="PXD41_001184"
     CDS             complement(12500..12925)
                     /locus_tag="PXD41_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL6288726.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12996..13211)
                     /locus_tag="PXD41_001185"
     CDS             complement(12996..13211)
                     /locus_tag="PXD41_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6288727.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13230..13622)
                     /locus_tag="PXD41_001186"
     CDS             complement(13230..13622)
                     /locus_tag="PXD41_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288728.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
BASE COUNT         3596 a         3435 c         2615 g         4003 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 accatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaacaacc
     4621 gcttgtattc agcgaggaat gtaacccatt ttaaaacgct ttaaatccgt tttaaaaaat
     4681 tttaaaaaag ttggaatgat aaatcaccat aaaaaaaaca aaaacgccac agagagcgat
     4741 ttaggggcta tctgtggcga ttatcttatc gcttaatcca gcagtttttg ccagtaggct
     4801 tgcacatcgt ccaaaatatc ttgcctgtct tgcgaggtta attgtaaaaa aggtcgggct
     4861 tcaattttta ctttacgccc acgcccagcc ataccaccga attgatgaat agcagcataa
     4921 ggctcatttg tgccaacaat cgccgaatca ttattataat cagcagtaat gctgcccatt
     4981 aaattttccg tatcaactaa cggcgtgcct tgccgatgtt ttatacccag ccatttcggg
     5041 cgaccgccct catcaaaatt ggtcagtacc gccgattcca ttttgccggc aatattccgc
     5101 atcaagtctg ttttatttgc cgttttagca gcaatacggt taagcgtggc aataatttca
     5161 tcaatgccgt ggatttggat ttcaatcatt tttaaccttg caagttgatt tttaaaataa
     5221 acaggggtat attcctttta cggttattag aaaagcggtg ataatctccc tgccgcagcc
     5281 tatttgagat ggcaagtcct gctcaaatga ccgagagcgt gtgtaagtga ccgggagcct
     5341 tacctaataa ccgtattttt caacagcagc ttatccaatt ctttttgtcc aatctccctt
     5401 gttgatacca gaaataattc accaaactct tctaagtatt tcaccacaac aagaatacga
     5461 taatgctcaa agtttcgtat aaagctgaaa tttttgcctt cttgcaaaat atgattaggc
     5521 tgaaaaatta catcaggaat atttgcatac acatcaaacc caaaatcctg cccctcacgg
     5581 ctataaaact gcttaatcag tgtgtcatcc gaaagccata ccgtgccgac tttactgtcg
     5641 attaagcgtt gtgtttcctc acttaaccga ccagcagcaa atttaaagtt ttgattaagg
     5701 gcatttcgca ctttaaccat ctcatcaggc gagagttttt tcgccccatc tttggcaagt
     5761 gccacagcct cttctaactt gttaaacgcc tgcttaaatt caccaccgct catttctgct
     5821 ttggtaaatt ggtaagccag cttttcaggg tataaatcca aattcggctt ataggttaaa
     5881 cgccccacat tataatcaaa acctttatca gccaatcgca ccgtaccatc agccaattta
     5941 aagccaatgg tttcctcttg gttgcctaac ttatctttcg gtcgttttgc cttcactaaa
     6001 aacggctcgc tactgccgac ttcgtcaatc cctttacgct ttaaatcccg ctcacttaac
     6061 gcaatcacgg tacaacggca attaaagccg ttcggcggat aaaaagtcgc ccaaaacgga
     6121 tcgtcataac gataaatctt accctgtaat gcttggtgag cagggcgggt gcgttggtcg
     6181 cctaccgccg aatattgcca ataagggcga ttatccacat tatccatata ccgctgataa
     6241 cgagccgcag aataagcctg ttgcatattg gtacgataaa tcgtattcaa gcggcgaggc
     6301 gtgccgaaat gctcgccggt tttcgggtcg gcaagcagtt tgccatcaat gccacgacta
     6361 atcgtcgtgt ccatacaccc agcctttccg ttcaaattct gccgtaagcg ttttcttcca
     6421 ttcattaaag gatttcccct cacgccgtgc tttttccatc gactcataaa tatcacgggt
     6481 catttcaagg ctagtgagct tgctaatggt ggcggctcgc cccaatgcag aatcaaataa
     6541 ttcctgctta aacactttat tcgcaagcaa cttcttctgc cgtaaaaact caatcgcctg
     6601 cttaggctct agtccaatgg caaaattaac tttctgcatt cgcagcccct aataaatccg
     6661 ccaaaaataa cgcattcgct aaatagcggt cgtgttcttc actcactaaa tcagggtagg
     6721 ctgccgccaa tttttctgct gcctcatcat aagagctaca cgccattacc accgccaccg
     6781 cctttttcgt gatggggtca aattgggcgt taaaatccgg cacggaaaaa gcctcgtctg
     6841 ccaaatcatc taaggcatct tgctctttaa tgcccgtttt ggtttgggcc gacaaagcgt
     6901 gaaccttgcc cccacaaccg cattcgcaag cggtcatttt ttgcggaaaa tttgcggata
     6961 accccaccgc ttgtggcggg gcagaacgcc ctaacaccgc ttcattttct tgagcttcgg
     7021 gaataccgag tttatccatc gcccactgca ccggaatcgg cattccaata tccaccaatt
     7081 tcggcaagct ctcggcaaat aacgccaagt cggcaggctc tttggtatca aactcaaaac
     7141 tcggaatgcg ggttgggtcg atattgccaa aattaatttg cagaaacggc agaataattt
     7201 gttgggtaaa cgtctgcccc agctgtttca cgtccgacac caacaaatca cgccgcactt
     7261 cgttatgcac attgccgagt gcattggtag agcttttgcc gtctgcaccg ctggttaagg
     7321 tttgccccaa aatcaagcgg gcgatagact tctcacacca atccaccatt tgcaaaaacg
     7381 gattattgcc ggctgcaccg cctgcattag cggcgttatg caactcaata ctcatcgact
     7441 ccggcataat tccggcagcg ttgtgtccga tttccgctaa tgcacgttta agcgtttgtt
     7501 tttcgtttgg tgttgcccct gcaccgtatt taccaatgcg gataggcata ccatacagct
     7561 ccaaaaactc ggcaaagtcg tggatagagt agtgtttaaa catatacagc caagccagcg
     7621 agcggaataa attattgcgt gccgcctgtg tggagcggga tttatgcgta tgcaccaccc
     7681 agccaaattc tcgtaatggc tcaccttcgg tattttgtcg ggttttcagc aacagattgt
     7741 cgtgcttatc ccacttaaac cacgattgag gacggtggat aaaggcgttc ggataccaca
     7801 atttaccgtt aaacgcccat tcaatttcga gggcagcaaa accgtgtccc acagcgtcca
     7861 tacagtccat caccaaatct tcaaggttgc cgagctgata aaataactca tcaacctcat
     7921 cacgcagttt ttcttcctgc ggtgtggcat tgcgaggggc aacaatcgcc caatctacgc
     7981 ctaatgcggc acgcttacgg gtttggatat tggcaaaaat agagctgtcc cgctcctcaa
     8041 tatccataaa taattcgtgt tgagcggtaa tatcgccatt ctccgtatct tcaaaaatcg
     8101 ctttcatttt agcaggcgta ataaaattgc tcggatggtc ggagagtacc cgacctgtag
     8161 cggtaatttc ggctaaatcc gtctgcaatt cttgattttt aatcgggttt aaattcggtt
     8221 taatctgctt gttatgcttc tttttgctca taaattttcc ttttcagagc ttagttacgc
     8281 tcaatatagt ccccctcttt agcaaagagg ggagttacat taatgccgcc acttactgcg
     8341 atactcaccg tcaaaatcat ctacactctc ccactcaatc ggggcagagc tgctgagtgc
     8401 atttcgccat aacatttcca acgcatccgg accatcatcg tgatcggctt tcggaaaatg
     8461 gcgaagctgg ctttcaagcg tagattgcga gcggtgcaac aaaatcaaac cgttggcaat
     8521 atgcggttgc aagctctcaa tccgtaacat cttgtcactg ttcggcttgg ttgccgttgc
     8581 cggcaccggc ttaccacgct gggcagaacg cttgaccagt tccgtctgca aaaactcctg
     8641 aaattgcacc gtctccacaa accagcggtg acagttatat tgcgaatgca gtctaatcac
     8701 gtcctcaata attaaatccg gcaatcgttt tttgatttgt gcctcaacaa catagagctt
     8761 gccactctca cgatgatagc caccgaccaa aattgcagat gggtcacggc ttgccccagc
     8821 tttccccatt gaggggtcta acgccccgaa ataaatcagg tcatcaggca gttccgtcca
     8881 atactggata ctgttggcaa aaatcgcatc atcacccgag acagggtcat tttgatactc
     8941 ggagtcaaat gctgagtgcc catcactagc acggattttc atcaagtaga ggatagggcg
     9001 agctaaccaa gagactaacg ctcctttatc catttctgct ttatgctgtt gataaaagag
     9061 atcagacata gtgtcatcgt ccccttcttc cgagaggtat atattttccc attcgtccca
     9121 taacgccata ttgccgggaa agcgtaaaat ggctttaaaa cgaactcgcc gccaaccttt
     9181 tgtatttaaa atacggctaa gcacactgtc ataatgtaga attgtgccga catagataac
     9241 atcaaacttt tcacctgcag caccaagttt taaaactgct tttaaaaccc agttatgcaa
     9301 tttattacgc tgtgcaggtg tttctacgct ttcatcattc tcaatatcat caagtactac
     9361 taaatccgga cgataagctc cgtggcgacg accacgcaat ttttgcccag cccccacagc
     9421 ttcaactttt tgttttttag ccgtcataat gacacctgca cgccaaacct tgccttgtgc
     9481 aacctcgggg aaatcaattc ttaaacgagg gttagattca atttccactt taatagcttc
     9541 aagcatactg tatgcctgtt ctttggtgtc catcgcaata atgatgtatc tttttaaatc
     9601 acggactaaa caccacagcg ggaataattg cgtacaaatc gttgattttg cctcgccacg
     9661 aggggctgca atcgcttggc ggactgactt agaaagatca cttaccgaaa gcggtaaatt
     9721 ctcaaagaga taatgatgca actgtgattt atgttcagac cgcacatagt gtggaaaata
     9781 agcctgcaca aaatactcaa agccgtgaac agggtctaaa accttttgac ggcgttcgct
     9841 aatggcttgt ggtttatcgt cccaaccctc aaaactcgct tcgatatttt gttgtaactg
     9901 tcgccgtaat tcttccagtt ctttttcaaa ttctttgatt ttcataaatt acatacaagc
     9961 tgcgataagc aacaaccagc cccaaccgtc tgtaccgttg agcattagtt ttattgctcc
    10021 gaaaatacaa gcaagttgga caatccaacg gaaagagtaa tgcttatgca ctacagtttg
    10081 ttttttctta gccattactt aaactccttt ttgaattgca cttctagctc atctaacatt
    10141 tctaaaaagt caggcaataa atgcggtttc ttggttttga cgatattcgc catcatctca
    10201 atcgcacgca tagcggttgc cattgcactt gtttcaggca atagtttctt gctcgatgcc
    10261 gtcatcttcg caaacgaatc agccagagca gctaatgcct caaccttagc tgcggttggc
    10321 atttcggtgt tttcctcaag ctccgtcatc aacgtgcggt acttaattaa aaaaccggct
    10381 aacaagcctt gagcgatatt ctcaatacca ccgcttgcca tcgcttgcac atcacgagct
    10441 ttttcccagt tatcaccgtt cttttcagca gccgctttcc aacgccgtgc cgtgccgaat
    10501 gatacccctg cacgttctgc tgccatttcg aggcttaaac ggtcaaacac ataggcttgc
    10561 cgaaccgctt tttgtacttc aacatcgtgt gccatacgcc ctctacattc caaatttcag
    10621 gcgtaacaac tcaaaaccca cagcaacaat gccaccaccc aagccaccgg caactacagc
    10681 atcacggcgg tttttacgtg ccatttcatt cactaaacga ttagtcgctt ggatttcacg
    10741 gtgtaagcgt tcgatttctt cgttttgttt atccacctta tcgtttagct catttaatcc
    10801 acctaaaatc aggtctaatt tttccgaatc ggtttgcttt tgttttttac ggctcattac
    10861 ttatccgcct ttttatcaag tttttggttt acttctttga gcgagtctaa aatatcgtcc
    10921 agcttttcct taatccctct attcacttcg tgggcaagct ctttggattg atatttgctc
    10981 tccatttctg cttttagctc ttttaccgtt tgctcattgc ggttgatacg atcaaatatg
    11041 accttgccta caaacgccac taacggagca actacaaaag agatcagcat ctgaaacagt
    11101 ttttcatcaa tcataacgcc cccttttggc tcgcccgacc gggtgttgat taccttgtgc
    11161 caccgccgca cgcaccacgt tatgcaattc tgcaaggtca ggacggcggc gataaaaacg
    11221 ccattgttgc caacgctgtc tgagtttttt aattaacttc attctggcaa acttcctcat
    11281 aggtcagatt gtgtgcaagc acttggcgtt tcgtttccat tgtgtccgca cggctcgggt
    11341 aaatcagacc gaacgccgtg caacccgttg tcgtcacgga agtaaccgtg ttggtgcaac
    11401 tgctcatcaa tggcactagg ctgaatacgg cgagtttcac taacgtgttt ttgctgaatt
    11461 ttggcatttt taacctctgc atttttttgt tgaatttcga ccgcttgttg ctgcttttcc
    11521 gcctttaatg tagcggtaag tttccgctcc tgctttaatt gccagctttt ataaaaggca
    11581 taggctaaaa ttgtgcttac tacaccaacc acacctgcaa tttgttgagt aatcattctt
    11641 cagcctccct tgagcgttct ttttgtttta acgcacttac cacccctttt gtggctgggc
    11701 tacccaatac acaaatacca gcataagcaa accaccagtc ggaaataaac ggcttatcgt
    11761 aaaggtaggc gtgaattaaa atgcccgata acactaacca gctcataaac tgaataaagc
    11821 cagtggtgct ggctgtgccg tctttattgg taattaaatc aagtaaaaat tgcttcacga
    11881 ttattcctcc accgtgtctt tggcaaaata acgcaaatta cccgccattc ggttaatcca
    11941 acctctacca aaacggtcaa agtgtttgag tttggtgtaa aactcaaggc gttctgcctg
    12001 aaataacaag cccacatccg caaccgaata acgctcaatc gcagccaaag tcactttacc
    12061 gataatgccg tcatcagcca cacctaccgc tcgctgtaac attcggctag cattgcccga
    12121 accgtggttt acacacgcat ctaaaaactg aaaagccaac tcaggcggga actgctcaca
    12181 gttataacgt tgccaaaagg ctttgaggta aatagttttc gcatccgcac ggctcattgc
    12241 acgcatagag ccggtatagc cattcgcacg ggcagtatgg atagtgatac cccaattcgt
    12301 ttcgccaccg gggtctttcg ggtcgttcac ataaccgccc tcgtgtccga taagacggtc
    12361 aaatgcaaga ttaaagtcag caatagttgc cttgtttttg ataggttcag tcataaaaaa
    12421 agcctcttta aattcaatga tgatttaaag agactttaat gatttagagc aacggggagc
    12481 aggcgaaagg attccacact taaaacaagg tagcttgcga aacggtatgc ttacgctgat
    12541 aatatcgtac tgcctcccac gcaacacgat cacacacgct gtatttaggg caaatttgca
    12601 taatcgcaag cctgccactt agccctcctt gctcggttaa ttgacaataa tcggcataaa
    12661 tctgctgatt acgcaacatt cttaatgcgg tttcacaacg tggcaaatag acctcgcaag
    12721 ctcccatata agcctgtaat ttcactgcat catcttgccc taatacctct ttgagcttat
    12781 taaaatagag ttttccgtta gaaaattgga atgaaaagcc accaaaggct ttgattagct
    12841 tttcagttgc cggcaaacca atcacgccca caatttcttt caccgtttcc ggcaaataat
    12901 gttcgacact ttcaaattca gacataaaaa atccccttga ataatttcca cgaaagccat
    12961 tatccaaggg ggttattcaa atctgtaata cttacttaaa aatttttttg caaatttttt
    13021 aaaagctcag cccattttgt gtacggcata tctgatctag ctgcggttga tgacagttct
    13081 gtctcccacc gcattactat tctttgcccg acccctaata tgttagctac ctctgtttgt
    13141 gtgaggttat ggtgctttct tagcattttt aagttgcttg gtgtgtatcc aaactctggg
    13201 ttttcaatca ttcacctccc tccattaaac tagctattaa atacagcaac aacgataggg
    13261 tttctaataa tgctctcgcc tttatcttct ccgcctcttg cactatcgcc tttaactagg
    13321 ataaagtttt gcccacagta tgactggaaa cctttaaatt caacatcaaa ttttttgcaa
    13381 gcatcacgac ctagattttt aatagcattt aacaaacctg cttcatctgc attttggatt
    13441 cccattgtac aaatgccgtc taattcttca tctgtttttt caccatcgac ccaaacaaaa
    13501 gaatttccta attcatcgcc aacttgatgc acatctgtag ttgctcttaa accataaaca
    13561 gcgaagcagt cttcatcggc atcgtttagt aaagcattta aaagtttttg gtaatctgtc
    13621 attttaattt ctcctgtttg gctatgggt
//
LOCUS       DANLXB010000063        13583 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLXB010000063 DANLXB010000000
VERSION     DANLXB010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13583
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            40..594
                     /gene="srlA"
                     /locus_tag="PXD41_001187"
     CDS             40..594
                     /gene="srlA"
                     /locus_tag="PXD41_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL6288729.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            625..1626
                     /locus_tag="PXD41_001188"
     CDS             625..1626
                     /locus_tag="PXD41_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL6288730.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            1671..2069
                     /gene="srlB"
                     /locus_tag="PXD41_001189"
                     /gene_synonym="gutB"
     CDS             1671..2069
                     /gene="srlB"
                     /locus_tag="PXD41_001189"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL6288731.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            2117..2905
                     /gene="srlD"
                     /locus_tag="PXD41_001190"
     CDS             2117..2905
                     /gene="srlD"
                     /locus_tag="PXD41_001190"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL6288732.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            3074..3454
                     /gene="gutM"
                     /locus_tag="PXD41_001191"
     CDS             3074..3454
                     /gene="gutM"
                     /locus_tag="PXD41_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL6288733.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            3517..4164
                     /gene="hxpB"
                     /locus_tag="PXD41_001192"
     CDS             3517..4164
                     /gene="hxpB"
                     /locus_tag="PXD41_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL6288734.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            4207..5004
                     /locus_tag="PXD41_001193"
     CDS             4207..5004
                     /locus_tag="PXD41_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL6288735.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            5015..5950
                     /locus_tag="PXD41_001194"
     CDS             5015..5950
                     /locus_tag="PXD41_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL6288736.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(5994..6544)
                     /locus_tag="PXD41_001195"
                     /pseudo
     CDS             complement(5994..6544)
                     /locus_tag="PXD41_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            6846..8705
                     /locus_tag="PXD41_001196"
     CDS             6846..8705
                     /locus_tag="PXD41_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL6288737.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            8809..9948
                     /locus_tag="PXD41_001197"
     CDS             8809..9948
                     /locus_tag="PXD41_001197"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL6288738.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            9960..10475
                     /locus_tag="PXD41_001198"
     CDS             9960..10475
                     /locus_tag="PXD41_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL6288739.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            10615..12480
                     /locus_tag="PXD41_001199"
     CDS             10615..12480
                     /locus_tag="PXD41_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL6288740.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(12770..13021)
                     /locus_tag="PXD41_001200"
     CDS             complement(12770..13021)
                     /locus_tag="PXD41_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288741.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(13033..13515)
                     /locus_tag="PXD41_001201"
     CDS             complement(13033..13515)
                     /locus_tag="PXD41_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6288742.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
BASE COUNT         3853 a         2649 c         3101 g         3980 t
ORIGIN      
        1 tgaaagaaaa atattttatt ttgaaaaacg gagatcggta tgattgaagc aattacacac
       61 ggagcagaat ggtttatcgg cctgttccaa aaaggcggtg aaaccttagt cggtatgata
      121 aacggtattt tgccactctt aatttcatta ttggttgtaa tgaatgccct gattaaattt
      181 gtagggcaag atcggattga acgacttgct caacgtagtg ccggaaaccc tatttcacgt
      241 tatttgatct taccggtgat cggcactttc gttttctgta acccgatgac attaagctta
      301 gggcgtttct taccggagcg ttacaaacca agctactacg ccgcagcctc ttatagttgc
      361 cactctatga acggcttatt ccctcacatc aacccgggtg aattattcgt ttatttaggt
      421 attgccagcg gtttaaccac cttaggctta ccacttgggc ctttagccat cagttattta
      481 ttagtcggta tgtttaccaa tttcttccgt ggctggataa cagacttcac caccgcattc
      541 tttgaaaaac gaatggggat caccttagat agagaagtac atttatccca ctaaccaagt
      601 aactgaaata cagaggaata gattatgagc aacaaagcga tttacattga aaaaggcaac
      661 ggtggttggg gtggtccatt aacattacct gttgtggaag gcaaaaaagt gctttatatg
      721 accggcggca ctcgccctgc gattgttaat aaattggtgg aattaaccgg ctgggaagcg
      781 gttgatggtt ttaaagaagg cgaaccgccg gcagaagaaa tcgggattgc gattattgat
      841 tgcggtgggg tattacgctg tgggctttac ccaaaacgcc gtattccaac cattaacatt
      901 cactccaccg gtaaatccgg ccctttagca gaatttattg tggaagatat ttatgtttca
      961 gcggtgaaag aaaacaatat tcgcttaatt gatgccgatg gaagtgtgcc tgtggcaaca
     1021 gagcaagcaa aaccaacttc atcaacgaca gcaacggcaa aagagtatga ctccagcaaa
     1081 aaaatcaccg aacaaagtga tggtttatta gcaaaaatcg gtatgggaat gggatcggtg
     1141 gcggcgttat tcttccaagc cggacgagac actattgata cggtgcttaa aaccatttta
     1201 ccgtttatgg catttgtttc tgcgttaatc gggatcatca ttgcgtcagg tttaggtgat
     1261 gtgattgccc acggcttgac ccctctggca aacagcccaa tcggtttagt tacactggcg
     1321 ttgatttgtt ccttccctct cctttcccca ttcttagggc cgggagccgt gattgcacaa
     1381 gttatcggcg tgttagtcgg tacgcaaatc ggtttaggca atattccgcc acatttagca
     1441 ctgccggcac tctttgctat taatgctcaa gccgcttgtg attttattcc tgtgggtctt
     1501 tcaatggcgg aagcaaaaca agataccgta cgggtgggtg taccgtcagt attagtcagc
     1561 cgttttttaa ccggtgcacc gaccgtgctg attgcgtggg cagtttccgc attcatctac
     1621 caataattaa ccacgataca agcggtggaa tttgaaaaat tttttgcaaa atgcaccgct
     1681 tgtcaaaacg agagaacatt tatatgacga ttatttatca aacgaccttt accaaaatcg
     1741 ggaattttgc tcaggaatca ttaacagacg atatgttaat cacttttaaa caaggcgcac
     1801 cggcagattt acaagattac tgcttcattc ataatccatc tgaattaagt agccctttag
     1861 aagtaggcga tatcgctgaa tttgatggcg tagcttatcc gattacggca gttggtagcg
     1921 ttgcatctga aaacttatcc gccctcggac acattacctt ccgttttgac ggggcaaatg
     1981 atgcggaatt tccgggaagc gttcacgtta tcggaacacc gccgcaaggc ttaacagaga
     2041 actcaacctt gattatcaag cgtgattaat gacggattaa aaataatttc aaattgaaaa
     2101 tttagaggaa tacattatga acaatgaaaa aaaagttgct atcgttgttg gcggcggtca
     2161 aacacttgga gcttttttat ctgaaggctt ggcagatgcc ggttatcgtg tggtggttgc
     2221 tgacttaaac ggcgaaaatg cacaaaaagt ggcagccgac attaatgcca aacaaggcga
     2281 aggaaatgcg attggggtgc aagtcgatgc ggctgatgaa ccaagcgttg aagcactagc
     2341 taaagcaaca gataccgtat tcgggcgtgc cgatgtattg gtttacagtg caggcacagc
     2401 gaaagcatcg cctatttggg atttcaactt aaacgatttt gatttgtcgg taaaagtgaa
     2461 tttaaccggt tatttcttaa ccgcaaaaca cttctcccgc ttaatgattc gtgacggtat
     2521 taaagggcgt atcattcaaa ttaattctaa atcgggtaaa gtagggagta agtataattc
     2581 cggttatagt gcagcgaaat ttggtggtgt tggtttaaca caatcgttag cattagactt
     2641 ggcagataaa ggcattaccg tgcattcatt aatgttaggc aatttattga aatcgccgat
     2701 gttccaatcg ttaattccgc aatatgcggc aaaactcggc attccggaaa gcgaagtaga
     2761 gcaagtttat attgataaag tgcctttaaa acgtggctgt gattatcaag atgtgttgaa
     2821 tgtcttaaaa ttctatgccg gcgaagaggc agcttattgc acaggacagt ctattaatat
     2881 taccggtggt caggtaatgt tctaagcaaa caagcggtca aatttgtcga tttttttaca
     2941 acaatttgca aaaaatgact aaaataaacc gcttgttaat tcgccacacc ggttaatatg
     3001 ccacagggga aagcgtattg ttttgaaatc gcaggtacgt ttaggctctg tggcttttta
     3061 ttaaggagca atgatggatt caattacact tctgattata ttggcaatga taatgtggct
     3121 gttacaagcc gttttgggtt ggcttcaaat taaagccttt aaccaagcct ttatggaaat
     3181 cagtaagaaa ggcaaagtaa cggttgggcg taatagtggt cgttttaatc ctaaatcggt
     3241 tattgtgttg gcgtttgatg atgagaaaaa agtggtagat agcctttgta tgaaaggatt
     3301 ttccgtcttt gccagaccgc agaaattagc gtctgtgatt ggtttgtctc ttgatcaaat
     3361 tgtgccggaa aaaatctttc caagcgataa acgttcacaa tttgccttaa aagtggcgat
     3421 atcttccgga tatagttgct cagatcaaaa ataatgcgat tttttatttc attttgaata
     3481 tttttttagt taaaaatgag ataatggaga ataaatatgc agatcaatag tgtcatcttt
     3541 gatatggacg gggtaatgat tgattcagaa ccccaatggg cagaggctca aattgcagta
     3601 ttagccgact taggtattaa tatcaccgag caagattgcg aacaactcac cagaggtaag
     3661 cggattgatg agttgagcga cacttggatt aaaaaatttc agttatctgt ttccaaccaa
     3721 gcattaagtg aagccatttt ggcacacggt tgtgctgcga ttgaacaaca cggcaaagca
     3781 ttaacgggtt tatatgaatt attggatttc ttaaaatcta atcagatcaa gttagccgtt
     3841 gcaacctcat cgccgccggt ggtgattaaa gcggtgtttg atcgcttaaa actgtgggat
     3901 tatttcccga ttcgatgcag tgcaatggac gaagaatatg gcaagccaca ccctgcggtc
     3961 tatttgagtg cagtgaaaaa attaggcatt gaaaaacaag agtgtattgt tattgaggac
     4021 agtgtaaccg gcttaattgc cgccaaagcc gctaatttaa ctacattttt ggtgaatacc
     4081 gattatcaaa atgaaaaatt ttcaattgcc gataaaagaa tggcatcgct actagatgtc
     4141 attgaaaaat taaaacagca ttagcacaga ttagctcgct ccaatctttg ctaaattgga
     4201 ggaacaatga aaccttttga aagaagacag caaattttag cctatttagc tcagcacggt
     4261 agaaccgaag tggacgtgct ggcagactat tttaagctaa ctggtgcaac cattcgtaaa
     4321 gatttaactt cacttgaaga agataagaaa gtcttgcgta cttatggcag tgtagtctta
     4381 attgatgaag aaattcttga acgggaagag aaaatcaata aagaggacaa agacgataaa
     4441 ccgcttgcac agaaaaccgg cattaatctt caacaaaagc aagctatcgg gcaaaaagct
     4501 gcagagttaa ttaatgaggg aaactctatt atttttgatg caggcagcac agtgttacaa
     4561 atgattcccc atttaaaagc atttgataac ctctctttaa tgacaaatag tttaactatt
     4621 ttcaatgaga ttttgaaact caataaatcc tataacttac tgatttccgg tggtacattt
     4681 cgtgagaaat cagcttcatt tcacggttat tttgctgaat ccgcttttat tggttcaaat
     4741 tttgacatac tctttattgg cacagacgga ctagatttag acgttggatt aacgactttc
     4801 aatgaagtat ataaagtcag ttcgctaatg tgtgatgcgg caaataaaat cgtcttactt
     4861 gccgactcca gtaagtttgg acgtaaaagt ccgaatattg tgtgtgggtt agaaaaaatt
     4921 catactatca ttaccgatga aggattatct caagaaatga gagaacagat taaagcgaaa
     4981 gggattgagc tgttagttgt ataagggcgt aaaaatgaat catttagaca gtgcaaaaga
     5041 aacgttaaac ctctatgctc agcagattat cacgctaaac catcgacttt ctgaagaatt
     5101 taatgaggtg gtaaatatga tactcgcttg tcaagggcga gtggttgttg gcggtattgg
     5161 aaaatcgggg ctggttggca aaaaaatggt ggcaactttt gcctccaccg gtacaccgag
     5221 ctttttcttg cacccgacag aggcttttca cggcgatttg ggaatgctga aaccgattga
     5281 tatggtaatt ctgatttcta acagtggtga aactgatgat gtgaataaac tgattccaag
     5341 cctgaaaaat ttcggcaata aaattattgc gatgacaggt aatccttact ccacacttgg
     5401 gcgaaatgcc gatgtgattt taaatattgg tgtagagcgt gaagcctgcc tgaataatct
     5461 agctccaacc agctctactt tggtaacgat ggctttaggc gatgcgttag ccattgcgct
     5521 aatgaaagcc cgtgatttcc gccctgaaga ttttgcccgc taccacccgg gtggcagtct
     5581 tggtcgtaaa ttattgaaca gagtgcgaga tgtgatggtg cgtaaagtgc caaccgccag
     5641 cttagacacc acctttaccg aatgtttatc tgtgatgaac gaagggcgta tgggggtggc
     5701 ggtaattatg caagacgata aattggaagg cattattacc gatggtgata tccgccgcac
     5761 attagcgaaa ttcggggcgg agagcctaaa taaaaccgct gacgaaatta tgacccgtaa
     5821 tccaaaaacc attaacgata ccgaattttt agccaaagcc gaagatttaa tgaaagagct
     5881 gaaaattcac tcattaattg cagtgaatga tgagggtaaa gtaacgggat tgatggagtt
     5941 ctctagttaa tttatagatg taacgatggc gcaagcgttt acgcttgtgc cgttcactga
     6001 catatatcaa tatctaataa aacaggtaag ttgttagcat aatttcttgc actgctatat
     6061 ttccattcaa atgcctcgca tacaaaaccg cttacgatag ggttgttgtg aatatggttt
     6121 agcttttcat caaaaaattt ctgagaatag attgttatcg gttggttatg atgttgccaa
     6181 agttggtatt gcttgacatt atttcgttgt ttagctgccc gagtaaacat ccataataac
     6241 cattcttttc tactttcttg gggatttgtt ttaatttgct gaatcaacat ttagatgtaa
     6301 atgttttaaa atctcttatt aaatctgacg ggttttggtc ttttgcttga aataataaat
     6361 gaatatggct tggcataatg cagtagccat ataaaatcat ccctttttgt tttcgacaat
     6421 aattcaatga ttggataatg gtttgaaaat aatcttctcg aataaataga tcaatccaat
     6481 aaactgttgc aaaactaaca aaataggctc cgctcttctc ataaaactta tattttctac
     6541 tcattatgaa cctctaaagt gcagtttatg ctgatagtaa tataggtgaa cagttagggt
     6601 tagcaattca ttttattttt tcgatgtaga tcgcaaaaat agaattatgc ttggcacaag
     6661 cgaggacgct tacgccatct ttactccaaa aatgtgagat agatcacatt ttcaaatctg
     6721 cccaaaaaaa tttaatgtga tctacttcac atttctgaga gaaacatttt tgtaactttt
     6781 gaaagtggtg ctaatttaag cacgattttt tcaaccctaa ttttctctcc ttttttgagg
     6841 tttctatgtc taatttaaaa gtgaaagtcc aaggttttgg gcgtttctta tcgaatatgg
     6901 tgatgccgaa tatcggtgcc tttattgcgt ggggctttat caccgccctg tttattccaa
     6961 ccggttggtt gccgaacgag acttttgcta aactggtcgg tccgatgatt acttacttgc
     7021 tgccactgtt aatcggttac agcggtggta aattagtcgg tggtgagcgt ggtgcggttg
     7081 taggtgcgat tactacaatg ggtattatcg tgggttctga aatcccgatg ttcttaggtg
     7141 cgatgattgt aggtccatta ggcggctggg cgatcaaaac cttcgataaa gcgattgacg
     7201 gcaaagtaaa aagcggtttt gagatgttgg taaacaactt ctcggtcggg atcatcggta
     7261 tgattttggc aatgctttca tttgctttca ttggaggtat cgtcacccaa atctctgcgg
     7321 cattaggtgc aggtgtgggg gcgttggttg aagctggtct tctgccagta acctctatca
     7381 tcgttgaacc ggcgaaaatc ctattcttaa acaatgcgat caatcacggt gtgttcacgc
     7441 cattgggtac agcacaagca caagaagtgg gcaaatctat tctgttcttg attgaagcga
     7501 acccgggtcc gggctttggt atcttgcttg cctatatgtt ctttggtcgt ggcacagcaa
     7561 aacaaaccgc tggtagtgcg tcaatcattc acttcttagg cggtattcac gaaatttatt
     7621 tcccgtatgt gttaatgagc ccacgcttaa ttcttgcagt gattgcaggc ggtgcaaccg
     7681 gcgttttaac caactcatta ttaggtggcg gtttaatcgc accggcttcc ccgggttcta
     7741 tttttgcgat tttagcaatg accgcaccgg gtgctcactt tgcagttgtt gcctccgtga
     7801 ttctttcttg tgccgtgact tttgcgattg cgtcaatctt actcaaaacc caaaaaggtg
     7861 aagcctcatt ggaagatgca caagcacaaa ctcaagcgat gaaagcagaa agcaaaggcg
     7921 tagtaaatgg taacatcaac aaaatctatg tagcgtgtga tgccggtatg ggttcaagtg
     7981 cgatgggtgc gagtatgtta cgcaaaaaag tgcaagcggc aggtttaaac attgaagtac
     8041 aaaacttagc gatcaacgac ttaccgcaag acgcacaact ggtgattacc cacaaagact
     8101 taaccgctcg tgcaacacaa cgtgtggcaa cggctcaaca cttatcgctc actaacttct
     8161 tagacagtgc gttctatgac agcttagtgg caaaactggc taaccaccag ccacaacaag
     8221 cggtgcaaaa tacacaaaat tttgcaaacc cggtggaaga acctcaagcc gaagggttaa
     8281 aattgcaagc agcccaagtc tttttaggct tacaagctaa cagtaaagaa gaagcgatcc
     8341 gctttgccgg tgagcagtta gttaaagcgg gctttgttca accaagctat gtagatgcaa
     8401 tgttcgcccg tgagcaaatg gtttcaactt acttaggcga aggcttagct gtgccacacg
     8461 gtacatctga tgccaaagac agcgtactga aaaccggtat cgtggtctgc caatacccga
     8521 acggcgttcg cttcaccgat gaagaagacg gcgtggcgaa actggtggtc ggtattgcag
     8581 caaaaggcaa cgaccatatc caaattttaa gtgcaattac caacgcactg gacgatgaac
     8641 aagcaatgaa aacactgacc tcaacaaatg acgtggaaaa agtgttagca ttattatcta
     8701 aataatcacc ctgttgtgta ggggcgggtc ctgtgcccgc ccattatcct acaaaattta
     8761 gggcgggcac aggacccgcc cctacgtttt atagaggaac aatcatcaat gaacgcactc
     8821 cattttggtg ccggtaatat cgggcgtggc tttatcggca aattgcttgc tgatgctcgc
     8881 attttcgtga cttttgccga tattaaccaa actcaaatcg accaaatcaa ccaaaacaag
     8941 caatacggcg tgaaaatcgt gggcgatgac agccgtgtgg aaattgtcaa aaacattgcg
     9001 gcaattaact cgaaagacga aaatgccgtg attgagcaag tgaaaaacac cgatttaatt
     9061 accaccgcag tcggcccgaa tgtgcttggc tttattgccc cactgttcgc caaagcgtta
     9121 gtggctcgtg tggaaagtgg caacacccaa ccgctgaaca ttatcgcctg tgaaaatatg
     9181 gtgcgtggca caactttctt taaaggtaaa atttttgagc atttaactgc cgagcagcaa
     9241 gcagaaattg aaaaagtggt tggttttgtt gatagtgcgg tggacagaat tgtaccacct
     9301 gccgagccga accctgctga tccgttggaa gtcacggtgg aagagttcag cgagtggatt
     9361 gtggatcaaa cccagttcaa aggtgacatt ccaaacatca aaggaatgga attaaccgat
     9421 aacctgatgg cgtttgtgga acgcaaactg ttcaccctga acaccgggca tttaatctgt
     9481 gcctacttgg gcaaacaagc gggcgtgaaa tggattaaag aggcgattgc gattgaggaa
     9541 atcaaaactc aggtgaaagc cacaatggaa gagagcggtg ctgtgctgat taaacgttac
     9601 ggcttcgacc cacaagccca ttcagcgtat atcgaaaaaa tcctcaaacg ttttgccaac
     9661 ccgtacttaa acgatgacgt aaaccgtgta gggcgtgagc caatccgcaa actgagcgaa
     9721 aacgaccgct tgatcaaacc gttgcgtggc acgttggaat atggcttacc gtatcaaaac
     9781 ttggtcaaag gcgtggtgat ggcattgcaa tatcgcaatg aggaagaccc acaagcggtc
     9841 gaacttgccg aatttattgc aaatcacggt gtggcggcag cggtggaaaa atacaccggt
     9901 ttaaccgacc aagcggtcat tgctcaagtg gtggaattat atcaataatt cttgacacta
     9961 tgatggatta catcgacaaa ctcagtgagg aaaccaccct gcgtggtttc cttagcattg
    10021 ccaatcaacg ctttgccaaa gcggttgaac agttgattga acgagtgttt cgcaaaacgg
    10081 actttgcgtt aaaatccgtg gtggattcct tgtttgaaca tcaaggaccg ctggctgaca
    10141 ttgaagtacg tttaaaagtg ttgcttgggt tgggggtgat ctcacctaaa gtgtttgaag
    10201 atatctcgct tttccttgaa gtcaaacagc atttgaatga ggaagaagac gagttcgcat
    10261 tttctcaccc ggcggtagtg aaatttgcca aagatttgca ccatattgat tttttgccta
    10321 tcaatgaatt gctgaatatg aaagcgagtg cagcgaataa agattcgatg ctctttcaaa
    10381 tgcagcaaat gcggttggaa aaaatggtac gttcaagcct gattttggcg gtaactgaaa
    10441 ttgacgaaca actgaatgtg gaaagcccat tgtaaaaatt tcgtcaaaac taaccgcttg
    10501 tactgagcat tcacgccgta cgtgattgct ttttcctttc tttttgatct tatcggcttt
    10561 tttctttgct taaagcggtg taatctatcc ctaactattt tggaggatat ggttatgcaa
    10621 tcgttgctct cttttgtgcc ggattttctt aagcaagaac tgttttgggt aatggcgtta
    10681 ttggtatttg cgatttggca atttatccaa aacaagttgc gtatggacgt ggttgcctta
    10741 attgtaatgc tgttttttag cctgactaat attttatcag tcaaagaagt gttggcaggc
    10801 ttaagtgacc caaacgtggt gctgattgcg ttgctcttta ttgtcggaga aggtttggtg
    10861 cgaaccggcg tggcgaacca agtcagcgat tggttgatgc gggtgtcggg agcgagcgaa
    10921 accaaagtgc tggtgctgct aatgctctgt attgccgggc ttggatcttt tatgagttcc
    10981 accggcattg tggcgatttt cattccggtg gtgcttgcca tttgctcggg aatgggaatt
    11041 tctcctcgcc ggttaatgat gccgttaagt gttgccggac ttatcagcgg tatgatgacc
    11101 ttaattgcca caccacccaa ccttgttgct cattccgaat tagtaaaatc aggttttgaa
    11161 ggcttcaatt tcttcagttt tactccgatt ggattaatta ttttagtgat gggcatcggc
    11221 tatatgctga ttgcccgccg ttggttggat aatggtgagc aaagcaatac tcacagtcag
    11281 gctcaaaaat tttcaatgtc gcagttaatt gaagagtatc aacttaaaga gcgagccaaa
    11341 atggtgctgg tggaagcaga ttcagactgt gtcggcaaat ctatcgggca actgaattta
    11401 cggattgagc aagggctaaa catcattgca attcaacgca ctaagcggtt tagaaaaatt
    11461 accgtcagtg cctcggtaaa cgaaattttc cagccgaaag atattttact gcttgatact
    11521 gccctcgatg atgaaactta ccaacaacgc tgtgaacagc tcaaacttcg cccgattgag
    11581 ctaaaaggcg aatacttttc ctcacaatat cgctcggtgg gtatggcgga aatttcggtt
    11641 atgcctgaag cagaatgtat cggtaaaact attcgggaac tcaaattccg ctcaagatac
    11701 catttaagca ttgtcggctt aaaacgtggt gatgaaatca tacaagagga actgctcgat
    11761 acgccactca aattcggcga tattttattg gtgatgggcg tatggcaaca aattcaccgt
    11821 atggacgacg atcatcgaga tttcttcttg cttagagatc cggcagaaag taaaaacgcc
    11881 cctccggcgt taagccaagc ccctcacgct ctgttctcag tgctgactat ggtgttgctg
    11941 atgattaccg gcattgtgcc aaacgtgatg gcagcgttga ttgcctgctt aatgttaggc
    12001 aagttccgct gtgtggatat gaaaagtgct tatgattcga ttcatatgcc aagcattgtg
    12061 ttgattgtgg ggatgatgcc gttttctatt gccttacaaa aaaccggtgg tgtggattta
    12121 accgttaggc ttctacttga tgcaatgcaa ggcttagatg tacattttgt tctaatagta
    12181 ttatttgtag taacagcgat tatcagtgct tttatttcca acacagcgac tgcaattttg
    12241 gttatgccga tagccattgc gattgctaac caacttggct actcaccggc accttttgtg
    12301 atgacggtcg ctgtttcagc ctccgccgct tttatgacgc cggtttcttc accggtaaat
    12361 acgatggtat tagcaccggc aggctataaa tttattgatt tcgttaaagt tggtgtgccg
    12421 tttactgtac tggtgatgct ggtgtcggtg tttgtgattc cgatgttatt tccgctctaa
    12481 acactcctct aaattacaag cggtcatttt tggtaatctg acgttgacgg taaaattgtt
    12541 gagtatgtct ggcaacatag tgtggggtac tgatcttttt tgcatagaga gaaagaaaaa
    12601 aatttgggcg gaaaaataac ggcgaggcta ggaaatacaa ggcttcgccg tttttgtttg
    12661 gggtgagtta tgcaaaaaac gaaaatgagc aaaaatagaa aaaaatgggc tatttttacg
    12721 ttattttttg cataggtctg agcaggttta aacggatttt aaaacaattt taagcgccct
    12781 catctcggct ggctcggttg cgttgctcta agctgtgaat gaggtcgtgt acacgttgtt
    12841 tatcggcaca ggttaggttg gtgttattat ccaccgtgca gccggcaatc accgtggcgt
    12901 tatcgccgtt ttgaatgatg acgttgctgt tattaaacac ctgtataggc tcttggcttg
    12961 gctggctgtt gccggcagtg ctattgtctc tgaataattt gagaatggct tgtttgtcca
    13021 tattgtcccc tgttatgcca ccagtttgag taatcccacc attttttctt tttcgctttt
    13081 ttcttgcgtg agaagctcgt agaaagccca caccatttgg gcttttccgg caggcttcat
    13141 ttcccgttgg gtaatttcca gcacctcttc caacgtttct attgcctctt gtaacttagc
    13201 tttgataaca actacttccc cttcttctgt ctgcggtttt gtggcataca caggctgtgg
    13261 ctctcttgtg acattaaggc tttgcgagtg tcgctcacct gttaataggt agcaaggctc
    13321 aacgttaagt atttgtgaca aagccataag ttttgatata ggaggttctc ttgtatcagc
    13381 ctcccacgct tgtaatgtag atattgcaat acctcctagg gcatcacaaa cctcagatct
    13441 acttaatttt gcattttttc tgctctgttc tattcggtta ccgaaaccaa taaccttttt
    13501 acactctatt ttcataactg taaaaaaata agttgagatt tttagccttt tacactctaa
    13561 aaacctataa ataaatcaat aac
//
LOCUS       DANLXB010000064        13374 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLXB010000064 DANLXB010000000
VERSION     DANLXB010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13374
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            372..1016
                     /gene="rppH"
                     /locus_tag="PXD41_001202"
     CDS             372..1016
                     /gene="rppH"
                     /locus_tag="PXD41_001202"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL6288743.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            1018..1806
                     /locus_tag="PXD41_001203"
     CDS             1018..1806
                     /locus_tag="PXD41_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6288744.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            1814..2611
                     /gene="lgt"
                     /locus_tag="PXD41_001204"
     CDS             1814..2611
                     /gene="lgt"
                     /locus_tag="PXD41_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL6288745.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            2698..3366
                     /locus_tag="PXD41_001205"
     CDS             2698..3366
                     /locus_tag="PXD41_001205"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL6288746.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            3436..3696
                     /locus_tag="PXD41_001206"
     CDS             3436..3696
                     /locus_tag="PXD41_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6288747.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            3693..4025
                     /locus_tag="PXD41_001207"
     CDS             3693..4025
                     /locus_tag="PXD41_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL6288748.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            4152..5183
                     /gene="trpS"
                     /locus_tag="PXD41_001208"
     CDS             4152..5183
                     /gene="trpS"
                     /locus_tag="PXD41_001208"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL6288749.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(5247..6002)
                     /locus_tag="PXD41_001209"
     CDS             complement(5247..6002)
                     /locus_tag="PXD41_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL6288750.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(6058..6585)
                     /gene="ppa"
                     /locus_tag="PXD41_001210"
     CDS             complement(6058..6585)
                     /gene="ppa"
                     /locus_tag="PXD41_001210"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL6288751.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            6802..6877
                     /locus_tag="PXD41_001211"
     tRNA            6802..6877
                     /locus_tag="PXD41_001211"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6835..6837,aa:Lys,seq:ttt)
     gene            6900..6975
                     /locus_tag="PXD41_001212"
     tRNA            6900..6975
                     /locus_tag="PXD41_001212"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6933..6935,aa:Lys,seq:ttt)
     gene            6997..7072
                     /locus_tag="PXD41_001213"
     tRNA            6997..7072
                     /locus_tag="PXD41_001213"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7030..7032,aa:Lys,seq:ttt)
     gene            7165..8199
                     /gene="mltG"
                     /locus_tag="PXD41_001214"
     CDS             7165..8199
                     /gene="mltG"
                     /locus_tag="PXD41_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL6288752.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            8210..8830
                     /locus_tag="PXD41_001215"
     CDS             8210..8830
                     /locus_tag="PXD41_001215"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL6288753.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            8830..9807
                     /locus_tag="PXD41_001216"
     CDS             8830..9807
                     /locus_tag="PXD41_001216"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL6288754.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            9938..10180
                     /locus_tag="PXD41_001217"
     CDS             9938..10180
                     /locus_tag="PXD41_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6288755.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            10173..10457
                     /locus_tag="PXD41_001218"
     CDS             10173..10457
                     /locus_tag="PXD41_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288756.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            10462..11250
                     /locus_tag="PXD41_001219"
     CDS             10462..11250
                     /locus_tag="PXD41_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL6288757.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            11260..11781
                     /locus_tag="PXD41_001220"
     CDS             11260..11781
                     /locus_tag="PXD41_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL6288758.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            11856..12557
                     /gene="lpxH"
                     /locus_tag="PXD41_001221"
     CDS             11856..12557
                     /gene="lpxH"
                     /locus_tag="PXD41_001221"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL6288759.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            12554..13344
                     /locus_tag="PXD41_001222"
                     /pseudo
     CDS             12554..13344
                     /locus_tag="PXD41_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT         3973 a         2847 c         2781 g         3773 t
ORIGIN      
        1 agttattcac gcctaatttg aaaaactatc acatctttat ccacaaatgg tggggataac
       61 tctgctttat ttgcgaagca aaaattgccc tgcttattca ttttaaaatt taaacttatt
      121 ttgacgagaa aaaacgcaac aacttgatct ttatccagat cattgcttaa gaaaaagatc
      181 gcatttttag atctgattaa ttgctctgtt ttacaacgtt ccgcctgttt atcctcaact
      241 tataccactt atattcaata gttatccaca aagttattca caagcggtta tattttatgg
      301 tttttttgca aatcaaccca aagtatgaaa caattctccc attctagaat ttttatcaat
      361 taggtggtcg agtgatcgat ttcgatggct accgcccaaa tgttggaatc gttatctgta
      421 ataagcacgg gcaagttctg tgggcaaaac ggtttggtca aaactcttgg caatttccgc
      481 aaggtggaat taatgagggg gaaaacattg aagcagcaat gtaccgtgag ctttatgaag
      541 aggtcggctt aagtaaaaaa gatgtacgat tgctttgggc gtctaaatat tggctaaaat
      601 ataaactgcc aaaacgcttg gtacgtaatg aaggctctgg tcctgtctgt atcgggcaaa
      661 aacagcgttg gtttctactg caattaatcg gtgatgaaag cctgattaat ttgaaaacca
      721 cgaaaaatcc ggagtttgac ggctggcgtt gggtcagctt ttggtatcca gtccgccaag
      781 tggtctcttt taaacgagat gtttatcgca aagcgatgaa agagtttgca caggttttgc
      841 aaaacaatat tcaaaaagcg actgacgata aaaccggtga gaaaccacgc attgagcgtg
      901 gcgagacttc gccccatact tataaaaaaa cctctcagga ttctgccaaa gcctataaac
      961 gagaagctcg taagccttat cgtccttggc atcaacataa tcaaaaagga aaataagatg
     1021 actattttat taagctgcct ttttttaggg gtgtttgtcg gctttttagc cggcttgttc
     1081 ggcattggtg gtgggttaat catcgtgccg agtttggtct tcctactgcc catggcaggt
     1141 gtaccgccgg aatatataat gtccaccgca ctcggcacat cattttcaac cattattatt
     1201 accgcctttg catcggcaca acgccatcat aagttaggca atgtcgatat ccaaaccagt
     1261 aaatatttta ttccagcgtt gatggtttcg gtttttctat cgggcttggt ggtaagccgc
     1321 ctcgatccgc aactgatgtc tagaattttt gcggtaatgg tactttacct tgcaggtaaa
     1381 atgatttttt caataaaaag agcaccgaaa aataaaccac ttaccgttca aacgacgata
     1441 atcggaggtt caatcatcgg tgcgttagcc agtatggcag ggatcgcagg tggagccttt
     1501 attgtaccat ttttaaacga tcgaggctta gaaatgaaac gtgccatcgg cacttcctca
     1561 ttttgcggag catttttagg tttatctggc acaatcagct ttattgtaag tggctggggc
     1621 ttagaaggaa tgcctgatta ttctctcggt tatgtttatt taccggctct gtttggtatt
     1681 acggcaactt catttttcac ctcaaaaatg ggggcaagtg ccgccaacgc tctacctgtg
     1741 ccgatgctga aaaaagcctt tgcggtgctt ttggtctgta tcgccatcaa tatgttttta
     1801 aaataaggac actatgaacg aacaatttat ccaatttcca caaattagcc cgattgtgtt
     1861 tgaaatcggt ccgattgccc tgcgttggta tgggctaatg tatttagccg gctttgcctt
     1921 tgcctactgg ctgggaatga gacgggcgaa aaattccaat ggagtttgga caaccgagca
     1981 agtggatagc ttagtctata cttgcttctg gggcgtagta ttaggtgggc gtatcggcga
     2041 tgtgttcttt tatagcttcg accgtttctt acaagatccg ctctacctct ttcgcatttg
     2101 ggaaggcgga atgtcctttc acggcggttt aatcggcgtc attgtagcaa tgatttgggt
     2161 ttcctaccgc caaaaacgca atttctggca gacagcagat tttatcgcac cgctagtacc
     2221 gttcgggcta ggtatggggc gtatcggcaa tttcattaac gatgaacttt gggggcgtgt
     2281 aaccgatgtg ccttgggcgg tgttatttcc aagcggtggc tatcttcccc gccacccgtc
     2341 acagctttat gaagcctttt tagagggtgt ggtgttactc tttatcctca actggtttat
     2401 tcaaaagcct cgcccggcag gtgcggtttc agggttattt ttaatcggct acggcacatt
     2461 ccgctttatt gtggaatact tccgagaaat cgaccataac gtcaatacca ccgcagattt
     2521 aatcactcgt gggcaactac tctctttacc gatgattatc ggcggcatac tgattatggc
     2581 gtgggcgtat aaagtaaaca aagtgaaata aacgtagggg caagtcaata tttgccctca
     2641 ttacaaaaat tgcaaaaaat ttgcagaaaa cgaccgcttg tgtttgaagg atatactatg
     2701 agtaaaaaat acaaagtcat cggtttcgac ttagacggaa cgctaatcaa caccctcccc
     2761 gatctcactc ttgtcgccaa ttcaatgttt ctagaagccg gtttgccaac ggttacacaa
     2821 gaaaaagtgc tgacttggat cggtaaaggg gcagatattt tcttccaaaa tgcggttgct
     2881 cacaccggca gaattttcca agccgatgag ttggtgaaaa tgcgagtgag ctttgataaa
     2941 tactacgcca cctatgtgtg cgaggaaagc acccttttcc caaatgtgaa agaaacctta
     3001 gaaatcctca aagcaaacga ctacccgctg gtggtgatta ccaacaaacc gaccaaatta
     3061 gtcgagccgg tgctttccgc tttcggcatt tatcatttat tcgatgaaac ccttggtggg
     3121 caatcgctcc ccaaaatcaa accgcaccct gacccgatgt tttttatctg cgaaaaattc
     3181 ggcattaccc catcagaatt actttttgtc ggcgactcag aaaatgacgt gattgccgcc
     3241 aaagccgccg gttgtgatgt ggttggacta acttacggct ataactacaa tgtgccgatt
     3301 gaacaatcta acccgacttt tgtgacatct gaatttaaag atgtgttgaa aattgtgggg
     3361 ttataaagaa aacatttgtt ttcttttgat gtttgcttta gactttccga acctaaagat
     3421 ttaaaggagt aaagtatgcc aacaatcgca ttacgtcagg tcggtggctc ggttgcaatg
     3481 gtgattccgc ctgctttttt agaggcactc aagctctccg tcggtagcaa agtggatttg
     3541 tctttaaacg acaaccaact cgtgattaat cctgcccgcc caaaagtgaa atacagctta
     3601 gaggaattat taagacaatc cgattttgag gcagcaagga atgaagaaag ccaatcgtgg
     3661 ttatccgagc cggcaatagg aaaagaaatt ttatgaaacg tggcgatatt tactggctcg
     3721 atcttgatcc aaccttagga cacgaacaat caggcttccg ccccgttgta attgtttccg
     3781 caactgcatt taatctagcc agtaaactgc ctgtggttgt gccgattact aacggtggag
     3841 cttttgctga aagactgggc tttgccgttt cattaaaaga tgccggctta aaaacaacag
     3901 ggattattcg atgcgatcaa cctcgcacag tcgatattgc acaacgccat ggaaaattta
     3961 tcgaagcctt acccgaaagc ctacttgatg aaattatggc aagggtttca gtgatttttg
     4021 agtaagatac aagcggtctg atttgctcta ttttttgcaa aatcatcaat aaatctgacc
     4081 gcttgtactt ttatcccttc ccaataaccg ttaagataac ctatattttt caaatcaaac
     4141 gagaagataa aatgagcaaa cctattgtat ttagtggcgt gcagccctca ggtgaattga
     4201 ctatcggtaa ctacttaggg gcgttacgca actgggtgaa aatgcaagat gattatgact
     4261 gtgtatattg cattgtcgat caacacgcca ttaccgttcg tcaagatccg gagtcgctac
     4321 gcaaatcaac tttagatgtg ttagccctgt atttagcttg tggcattgat ccaaacaaaa
     4381 gcactatttt tattcaatcc cacgtgccgg aacacgccca attagcttgg gtgctgaact
     4441 gttacaccta tttcggtgaa atggggcgta tgacgcaatt taaagataaa tcagcacgct
     4501 atgaagagaa tgtcaatgtg ggcttattta cttatccggt attaatggcg gcagatattc
     4561 tgctttacca agccaaccaa gtgccggtag gcgatgacca aaaacaacat ttggaaatca
     4621 cccgtgacat tgccaaccgt ttcaatgcct tatacggcaa aaaagattcc gaaggcaacc
     4681 tgatcgagcc tgtttttgca gtgccggaag tctttattgc gaaatccggg gcaagagtga
     4741 tgtcgctact tgagccgacc aaaaaaatgt caaaatcgga cgataatcgt aacaatgtga
     4801 ttggactatt ggaagatccg aaagcggtag cgaagaaaat caaacgggca atgaccgatg
     4861 gcgatgaacc gccagtagtg cgttatgacg tacagaataa agccggtgtc tcgaatttat
     4921 tggatattct ctccgccatt accggcaaaa ccattgccga attagaaacc gaatttgaag
     4981 gcaaaatgta tggtcatttg aaaacagaag tagcagataa ggtttccgaa ctattaacca
     5041 atctgcaaga acgttatcac cactaccgcc aagatgaagc attattggaa aaaatctacc
     5101 gtgaaggggc agaaaaagct cgagctcaag ccaaagcaac gttagataag gtatatgaat
     5161 tagtcggttt tgtgcgttac taacacttaa tgaaaaatgc tcttgaggat tcaagagcat
     5221 ttttgcaaaa aagaaccgat tgtcaattat ttacgggcgt tataaatctt cattgcttcc
     5281 ggcacaaggc gggctaagtt ttcttgacgg tcagcatttg atgggtgagt tgagaaaatg
     5341 gacaagcctg aatcgccatt ggctttactc atttttaccc aaacattcgg cgctgctgat
     5401 gggttgtagc ctgattctgc cattaaaatt aacccaactt cgtccgcctc agtctcttgg
     5461 ctgcgagaga atggcttggt ggcaatcaaa tccacgccag tgctgagtaa accttcggtg
     5521 cttacgcctg ttgaggcagt cacagccaca tctgcaatag cacctacaat actggtaata
     5581 gcgctaaccg tacggtctga tttaccgtgt tctttcagtg cgtgagccat ctcgtgtccc
     5641 attaccactg caatttcatc gttcgataaa ttaagtcttt ccactaaccc cgtgtaaaac
     5701 gccattttac cgcccggcat cgcccacgca ttgagttcat ccgatttcaa tacggtaatt
     5761 tcccaatgaa aaggtacacc agtctggttg gctctttccg cataaggctt cattttatga
     5821 aaaacagtgt gaatccgctt agcggtggca gacgaattgt caatcgcatt ttgctgacga
     5881 gcttgggttt tcacttgagc ataactttga gccgcttctt ggttaatgct ttctgttgtg
     5941 gcacaagcgg taatcactgt tgctaaaaaa actgaataac ttaatttttt gatgaatttc
     6001 attttatatc ccacaaaaaa tgccaaacaa atttgcttgg cattcaaaaa taaataatta
     6061 tttcttagca cgctcgaatg attctaagat ttcttggcga gcttcgttta catcgcccca
     6121 accttctact ttcacccatt tgcccgcttc taatgcttta tagctttcga agaagtgctg
     6181 gatttgtgct tttaataacg ccggtaagtc acctacatct ttgatgtggt catactcttt
     6241 acttaatttg gtgtgtggaa cagcaaccac ttttgcatca ccgccggctt catcggtcat
     6301 ttttaacaca ccgacaggac ggcaacgaat caccgaaccc ggttgtaacg gatatggtgt
     6361 tggcactaat acatcaaccg ggtcaccgtc tgatgataag gtgttattca cataaccata
     6421 gtttgccgga tagaacattg cggttgccat aaagcgatcc acaaataatg ccccggtttc
     6481 tttgtccact tcatatttga ttggatcaga gtttgccgga atttcaatta caacataaat
     6541 atcgtccggt aattctttac cggcaggaac taattctaag cccattttgg tttccttcta
     6601 taataggtga aataaacggc gtgattatag cctattttca gaaaaagata aaagcccgtt
     6661 tctcttttca ttttccgcca acaaatccgg ctaatttttt gctaaattgc ttacaaaccg
     6721 cacactcaac catttttcga taaaaaaaac ttgccaaagt tttaaaaatc cgtaagatat
     6781 gccctcgtta cgcaagatta tgggtcatta gctcagccgg tagagcagcg gacttttaat
     6841 ccgttggtcg aaggttcgaa tccttcatga cccaccatta atcttcaaaa cacctctaag
     6901 ggtcattagc tcagtcggta gagcagcgga cttttaatcc gttggtcgaa ggttcgaatc
     6961 cttcatgacc caccattaat ttcaaaactc ctctgagggt cattagctca gtcggtagag
     7021 cagcggactt ttaatccgtt ggtcgaaggt tcgaatcctt catgacccac catttactca
     7081 aatcccattt gcaaattttt ctgaaaaaac aaccgcttta tagtagaatt cagtcaattt
     7141 ttatcacttt tattttattc atcaatgcta aaaaaaatcc ttattgcatt aggcttagcc
     7201 ggcgttattg cttgcggtgg actgttttac ggctaccaaa aactcacctc tttagccgaa
     7261 cacccgatca cggttcagcc gaatcaactt ttcgtattgg aaaaaggcgt ttccagccaa
     7321 aaattagcgg ctctgttaga agagcaaggc attgtcaccc acgatgacgc cgatcttatc
     7381 ccttatttaa tgcgattata ccctgagtta agcaaattca aggctggtgc ttattcactc
     7441 gcaggcttaa cgacagtaaa agatttgctc gctcatttaa gctccggcaa agaagtgcaa
     7501 cttaacgtgc aatttattga gggcaaaact tttaaaattt ggcgggaaca actagcgaaa
     7561 gccgattatt tacagcacac gctacaaggc aaatcggaaa aagaaatcgc tgacttactc
     7621 ggcattccac acgaaaaaat cgaaggttgg atagccccgg atacttacaa ctacacgccc
     7681 aattccaccg atttagcctt gcttaaacgg gcttatcaaa agcagaaaac ggcgttggaa
     7741 caggcttgga aaaatagagc ggaaaatcta ccgcttgcaa caccatacga aatgctgatt
     7801 cttgcctcga ttgtggaaaa agagaccggc attgcgaccg aacgcccaca agtggcatcg
     7861 gtctttatta accgtttacg caacaatatg cgactgcaaa ccgatccaac cgtcatttac
     7921 ggaatgggcg atcgttataa cggcaatatc cgccgcaaag atttagaaga ggcaacgcca
     7981 tacaatactt accagattga cggcttaccg ccaacgccga ttgccatgcc gagtgaagct
     8041 tcgattaaag cggttgccaa cccggataat acaccctacc tctattttgt ggcagacggc
     8101 acgggcggtc ataaattcag caaaacactg aatgagcata ataaagcggt ggcagaatgg
     8161 attcaaattg aacgcaaacg caaaaatgaa caaaaatagt gagaacaata tgcgtggaaa
     8221 atttattgta attgaaggct tagagggcgc aggcaaaacg actgctcacc aagtgattct
     8281 caaagagttg gaacaagccg gcattaatga cgtagtaatg acccgagaac ccggcggcac
     8341 cccccttgcc gaaaagttac gccatttaat taaacacgaa accgaagaag ccattaacga
     8401 taaggctgag ctgctaatgc tctacgctgc tcgtgttcaa ttagtcgaaa atgtgatcaa
     8461 acctgccctt gccgaaggca aatgggttct gggcgaccgc cacgatatgt cttcccaagc
     8521 ctatcaaggc ggtggacgta agttggatcg tcacttactc gaaaccttaa aagaatcggt
     8581 actcggcaca ttcgagccag atttaacgat ttatctcgat ctcgatccgg tgattggttt
     8641 agaaagagcc agaggcagag gcgaattaga ccgcatcgaa cagcaaagcc ttgacttctt
     8701 ctaccgcaca cgagagcgtt atttagaatt aacccaacac aacgataaag ccgtgatcat
     8761 caatgccgaa caacccatcg aacaggtgac tgcggatatt caacaagtaa ttagaaactg
     8821 gctgaaataa tgtacccttg gctcgaaagc acttatcaac aacttaccga ttcattttta
     8881 cagggtcgag gtcatcacgc cttactgttc aaaacagatg ttggtcttgg tacagacacc
     8941 ttaatctaca aggtggctga atggttgctt tgcagccaaa aactccgcca tcaaccttgt
     9001 cttgaatgca aaagttgcct gcttatgcaa agcaacaacc accccgattt ccacattctt
     9061 gagccgattg aagacaaaga tattggtatc gaccaagtgc gtgagttgat ttataaactc
     9121 cagaatttcg cccaacaagg gggaaatacg gtcgtttata ttcgaggagt tgatcgttta
     9181 accgaggcaa gcagtaatgc cctgctcaaa accttggaag agccacgtga aaacgtctat
     9241 ttcttgctcg aagcaccgct tcaagcaaca gttttagcta ccattcaaag ccgcagccaa
     9301 acttgggtac tttacgcccc acaagcctca gaagtaatgg cttggctaca aacacaattt
     9361 ccggcaatct caaccgacga cttagagatt gcactccgcc tttgccactc acgcccacta
     9421 atttgcaaaa attttatcga aaatgaccgc ttgcaacagc gaaaaacctt tttgcaaacc
     9481 ttctggcgtt tctacaaaag ccacgatgtc ttcttgttat tccaagcctt cgcccaagaa
     9541 aaagagctga ttttacagca actcgaatgg ctggaaagtt tctttagcga tgccctaaaa
     9601 gctaaaatgg caatcagcca cggttggcta aacccggatc tccaaaacgg cattctccct
     9661 tttagccaac aactaacgac ccacggctta cttaaagggc atcaaattct ccaacaaacc
     9721 cagcgggatt taaccgaaat taacgccgtc aatccggaat tgatgttgct agattgcctg
     9781 acgaagttgg ttttggtgtt tgagtaaaag ccctctctca tagaaggtag ctttcaatta
     9841 gccgtaaaaa gaggcttcta gccctagaat atagtttata acttgcaaaa ttatctatct
     9901 ttgttattgt atgaataatt cacacaagga gaatattatg gcaagaacaa ccagcgtgac
     9961 tttaggcgaa cctttaaatg attttgtaaa tgaaatggtg gcaagtgggc gttatggctc
    10021 taccagtgaa gtagtgagaa ccgctttacg aatgcttgag gaaaaagagc aatacttagc
    10081 tcagttgcga caagccattg atgatggtga tgctagtggt tatgcaaccg aaacgattga
    10141 tgaaatgatg ttgagagtaa aggcggaact taatgtataa actttctgct caagcactcc
    10201 gagatcaaga gaaacttttt cgttacagta tctctcaatt tggtgttcaa caaacagaat
    10261 cttattttgc agatctaaag catattttga atttattagc tgattttcca acaatgggaa
    10321 cttctgcgga atatattcgt ggtggcttgc gaatgcacac acatcaatct catacaattt
    10381 attatcgaat aaaagcagat catatattta ttgttcgcat cttacataac caaatgaatc
    10441 ataaacgcta tatttagaaa aatgaaagac ttatttatca tagactcaca ttgtcatcta
    10501 gattctctag actacgaaac tcgtcacaaa aacgtggacg aagtaattga aaatgccaaa
    10561 gcccgagggg tgcatcattt tatctcggtt tgcactacag ttgggcgttt tgaagcaatg
    10621 aaaaacttaa ccgcccatcg taatgacgtt tcactttctt gtggcgttca cccgttgaat
    10681 gtggaagatg aaccttttga ttacgataaa ttatttcagt tcgctcaaga tccgaaagtg
    10741 gttgccattg gggaaactgg tttggattat cactacacac cggaaaccaa agcgttgcaa
    10801 caatcgcttt tcgttcaaca aattgaaatt gcaaacaaac tcaataagcc actcattatc
    10861 cattctcgtt cggcacgcca agatacgatg gatatgttgg aacaaaataa tgccgaaaaa
    10921 tgcggtgggg tgttgcattg ctttaccgaa gattgggcaa tggcaaaacg ggctttagac
    10981 atcggctttt atatctcaat ttcgggcatt attactttcc gcaatgcaga agaactccga
    11041 gaagtcgtgc gaaaagtgcc gttagatcgc ttattggttg aaacagattc cccttatctt
    11101 gccccgattc cttatcgtgg taagccgaac cagccggcgt atgtgcggga aacttgcgaa
    11161 tatgtggcga cattaaaagg cgtttcaact gaagaattag ctcgcattac aaccgaaaat
    11221 gtgcaacact tattcaacat taaattataa ggaactaata tgagagcaat acttaagtat
    11281 tttctgattc ttgtctcact atcatttttt attgtattag gcggtgcagt taattatgca
    11341 atgccaagtt atgaagatac cgtagtaaca ggtatggaag tacgccgaat ggataaagat
    11401 ggtattatca gcaaagcgaa tcctgctgat ggcgaggtgc gcgatgttta tttcttattc
    11461 acggaagatc ctgaaaccaa aaaggtaatg gtttatcgta atgaagatac cggctggggg
    11521 ttgcctcctt atttcaaatt cggatctgcc gacattcaag ccaaagctca agcctacgct
    11581 aacgaaaaac aacgtgtgca aattaaatat tacggctggc gaatcaattg gctaaatgaa
    11641 tttagaaata ttgtttcaat caagccatta gaagaagcag aaacagtcag caaaccaatt
    11701 atgagctatg tactttatgc cgtattggcg ttcttgttct tcctctcagt acaatttatt
    11761 cgtggcattt ttaaagatta atgccgatta acctttgaca aacggttcga ttttgtaaaa
    11821 aattgaaccg ttttcttttt tatcaacaat atcaaatgac gtactatttt attgccgatc
    11881 tccacttaaa tgaaaatcag cctgaaatta cccacctctt tttgcaattt atgcaagaaa
    11941 aagcactact tgcagaagcg gtttatatct taggtgatct gtttgatttc tggattggcg
    12001 atgatgagca gtctgaactc atttcaaccg ttaaacaggc aatcaaaacc ctcactacaa
    12061 gcggtacaaa atgctatttt atttgcggaa atcgtgattt tttaattggc aaacgattca
    12121 gcgaacaaac gggtatggtt attttgcctg attatcacgt tatagattta ttcggcacat
    12181 ctaccttgct ttgccacggc gatacgcttt gtactgatga tgtgaaatat caacaatttc
    12241 gtaaaaaagt ccaccaaaaa tggcgacaag ctatcttttt gatgtttccg ctttcttggc
    12301 gaattcgtat tgcggagaaa attcgatcca aaagcaaaca agaaaagcgt gataaatccg
    12361 ctgaaattat ggacgtaaac gctgaagtta ccgctcaaat tgtcgcaaaa tacaatacaa
    12421 ctcaacttat acacgggcat acgcatcgac aagcaatcca tcagcataat ggatttaccc
    12481 gcattgtatt aggcgactgg aaagaaaatt acgcctctat tttaagcgta accgagcaag
    12541 gagctgaatt tatatgatta atgtgattat tccttgctat aacgccgaaa acacccttgt
    12601 tcgtgcagtg caaagtgtat taaatcagtc tggattaaat ctattgtggc ttattgatga
    12661 tgcttcaacg gataatacgc ttgccttagc taaacattta caagcccaag tgcctgataa
    12721 aattagagtg gaacaaatgc ctcaaaatgg cggtgttgcc aaagcacgca actggggagc
    12781 attacaaagt gaaacagatt taattgcctt tttagatgct gatgatgctt atgaaaacgg
    12841 ggcattgcaa gttgctgaaa agatttttga gtttaaaccg gaaaccggct tggttcggtt
    12901 agcattaaaa ccggtaactt agatcaacgt tacagctctc accctaattt tgagttagct
    12961 tggcaatata tgcaaatgac tggtgcaggc aacactgtat ttcggcgtag tttcttcctc
    13021 gcttgtggcg gctttccaca acatcagctc ttccaagaat taggtggaga agatggtgct
    13081 ttaggcatag ccactacaca aattagctct gtagctactg catttaatga tgtcggtgtt
    13141 ttacattact gccgagaggg tatgcacgca gaaagattat taaatgcgat tttattcaac
    13201 gaaaaagatc ccaatgttac tgaagaaaaa gttaaacaag ccaacctaat taccgaaaat
    13261 attgttaata atattagaaa tctacaagac tgtcttaata gtaaagggat tggtattaag
    13321 ccttatacgc ttgaatggag ctaaaaaagc atttgcagat tttccctaaa aaaa
//
LOCUS       DANLXB010000065        12922 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLXB010000065 DANLXB010000000
VERSION     DANLXB010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12922
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            261..1178
                     /locus_tag="PXD41_001223"
                     /pseudo
     CDS             261..1178
                     /locus_tag="PXD41_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(1180..1848)
                     /locus_tag="PXD41_001224"
     CDS             complement(1180..1848)
                     /locus_tag="PXD41_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL6288760.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(1892..3259)
                     /locus_tag="PXD41_001225"
     CDS             complement(1892..3259)
                     /locus_tag="PXD41_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL6288761.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(3378..3473)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(3644..4696)
                     /locus_tag="PXD41_001226"
     CDS             complement(3644..4696)
                     /locus_tag="PXD41_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6288762.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(4743..5168)
                     /gene="ruvX"
                     /locus_tag="PXD41_001227"
     CDS             complement(4743..5168)
                     /gene="ruvX"
                     /locus_tag="PXD41_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL6288763.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(5168..5728)
                     /locus_tag="PXD41_001228"
     CDS             complement(5168..5728)
                     /locus_tag="PXD41_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL6288764.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(5728..6459)
                     /gene="rsmE"
                     /locus_tag="PXD41_001229"
     CDS             complement(5728..6459)
                     /gene="rsmE"
                     /locus_tag="PXD41_001229"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL6288765.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(6519..6809)
                     /locus_tag="PXD41_001230"
     CDS             complement(6519..6809)
                     /locus_tag="PXD41_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6288766.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(6790..6963)
                     /locus_tag="PXD41_001231"
     CDS             complement(6790..6963)
                     /locus_tag="PXD41_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288767.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(7135..7722)
                     /locus_tag="PXD41_001232"
     CDS             complement(7135..7722)
                     /locus_tag="PXD41_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288768.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            7814..8125
                     /locus_tag="PXD41_001233"
     CDS             7814..8125
                     /locus_tag="PXD41_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6288769.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            8217..8306
                     /locus_tag="PXD41_001234"
     tRNA            8217..8306
                     /locus_tag="PXD41_001234"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8251..8253,aa:Ser,seq:gga)
     gene            complement(8482..8856)
                     /locus_tag="PXD41_001235"
     CDS             complement(8482..8856)
                     /locus_tag="PXD41_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL6288770.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(8881..9183)
                     /locus_tag="PXD41_001236"
     CDS             complement(8881..9183)
                     /locus_tag="PXD41_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL6288771.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            9304..9624
                     /locus_tag="PXD41_001237"
     CDS             9304..9624
                     /locus_tag="PXD41_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL6288772.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            9683..12409
                     /gene="secA"
                     /locus_tag="PXD41_001238"
     CDS             9683..12409
                     /gene="secA"
                     /locus_tag="PXD41_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL6288773.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            12496..12894
                     /gene="mutT"
                     /locus_tag="PXD41_001239"
     CDS             12496..12894
                     /gene="mutT"
                     /locus_tag="PXD41_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL6288774.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         3808 a         2474 c         2684 g         3956 t
ORIGIN      
        1 tatatggcgg ttggctcttt tgggtagtat tagctttttc ctttatctat tttattcttc
       61 gaatggttac ttatttagtt tatcgtcaac tgaatgaaga gcagattatt aaaggagcaa
      121 aagcccattc gcattttatg gaaactttat atggtattac aacgttaaaa tcattaggat
      181 tggaaaataa acgacaagaa cagtggatgt cgctcaatgc ggatgctttt aacacatcaa
      241 ttaaggtaac taaatttgat atgctgtttt ccggtattca tacctttatt tctaccatcg
      301 aacagatttt aattctttgg attggggcga caatgatgat tgaaaatgtg atgacattag
      361 gaatgtttgt cgcttttaat gcctatcgag gctctttctc ttcacgaatg gggaatttaa
      421 ttgatattat ttttagccta aaaattcttt cattacatag agagcggatt gcagacattg
      481 ctttaaatga agtcgaagat gaaagtaaat atcaagaact cagatttgaa cataaccaaa
      541 cagatataga agttaaagac ctttgtttca aatacgatcc tttttctaaa aatgtgcttg
      601 aaaatgtcaa tttagtgatc agaagtgggg aaagtgttgc tattaccgca ccatcaggtt
      661 atggcaaaac aacgttatta aaattaattg caggtttatt aaaaccaacc tcaggttctg
      721 tgtattttaa cggcattgat atttatcagt taggattaag tcaatatcgg agccaaattg
      781 cttgcgtatt acaggaagat aaattctttt ctggttccat tttagagaat attgttagtt
      841 ttgaaagtaa ttatgatcga gaatgggcta tcgaatgtag caaacttgcg aatattcaca
      901 atgatattat ggcaatgccg atgaattatg aaaccttatt aggagaatta ggaaataatt
      961 tgtctggcgg acaaagataa cgattgttta ttgctcgagc tttatataaa aagcctaaaa
     1021 ttcttttgat ggatgaggcg actagccatt tagatgaaga aaatgagaag cttgtcaatc
     1081 aagctatttc acgaatgaag ataacaagga ttattattgc tcatagacaa tcgactattc
     1141 agtcggcgga tagaattatt gccctgaatg acaggtaaat taattcctat ttttctgttc
     1201 ttgccgataa agtttattgc acggaatgct gtcgttgttg ccgtctagct ctttccagcc
     1261 gcattgttga aagtagcgtt ttgcctgtgc gtaattgccg atttggttgc agcttaattt
     1321 aatttggcaa tcaatcgttg gtggctggtt tgcaatattt tccggttttt tgaccgcttg
     1381 tggtaaggtt gaggtgtgtg tttttcgcca ttggctcggg ttaatcggga atttgtcctg
     1441 ccataagccg attttagctt gctgtgcttg atcttgtgct tcgatatatt cccgctttgt
     1501 ggtgtaagcc cacgccatac cgttttccac taaggctaag ttgatgtttt tatcgtttaa
     1561 gtagagggtg gcaagtaatc gttggtaacg atcatagcct gaaactatgg cagtaatgtt
     1621 ttgttgaaac acgaattgag ccagagcttg tttggctttg ttgccgtaag gctgcgcttg
     1681 ttcgggggca tcaatatgtt gtagccttat ttttagtggt gttttattga ccaaacaagt
     1741 gagggtgtcg ccatcgctaa tgccaacgac tttgcattgt agttggcgtt cggcggcata
     1801 taccgatgag aaaaataagc taaaaatcag ggcgtaaaga tatttcatta ttaaaaaaga
     1861 gagggctaat aagccctcat tctatcattt tttattcggc tttacctgtt ttaaggcgag
     1921 cgaagaaatc ttttgtttca ctaataatca ctttgcgtaa cgcaatcaat gcgattaaat
     1981 tcgggaatgc cattaagccg ttcacgatgt ctgccagcgt ccaaattgta tcgagttgta
     2041 aaaatggagc agaggcgatg agtgcaataa acagcaagcg gtataattta atgtattggg
     2101 tgcgacctcg agtgagatag acaaaacagc gttcaccgta gtagcaccag cctaaaatgg
     2161 tggtaaaggc aaagaagact aaaccaactg tcacaattat cgcaccgaat gagctgttta
     2221 aaccttgagt aaaagcggtt gtggtgagtt ctgcgccttt tacatcgcct gcccaagccc
     2281 ctgaaatcac aattactaag ccggtcattg tgcagacgat aatagtgtct aagaacgtgc
     2341 cggtcattga aattaggcct tgacgtaccg gctctttggt ttgggcggca gcggcggcga
     2401 tgggggcaga gcctaatcct gattcattcg agaaaatacc acgtgcaacc cctaattgaa
     2461 tcgcttgcat gacggtgaat ccgactgctc cgcctaatgc cgcttgtggg ttgaaagctg
     2521 cgtgtacaat agtaataatt gcttgtggga ctttttccat attcagtaga atgacggata
     2581 aagcggcgat gacataccca atagccataa acggtacaac aatggttgca attttagaaa
     2641 tccgctgcac gccacctaaa ataatagcgg taacgataag ggttaaaatg atcgcactga
     2701 agataatcgg cacatcaaag gtgctttcta aggcgtgggt aatgccattc acttggggga
     2761 acgtgccaat accaagcaaa gcgaccaata cgccaaaaaa cgcaaaggct ttagcaagcc
     2821 aacgccattt ttttcccatt cccagttcga tatagtacat cggaccacca gccacaaatc
     2881 cggctctatc tttagttcga tatttaattg ccaataagcc ttcggcatat ttcgtagcca
     2941 taccgaataa ggcaatcagc cacatccaaa ataatgctcc aggcccgccc gaatgaatag
     3001 cggttgccac gccgacaata ttccccgtgc cgatagtagc tgctagggca gtggaaaggg
     3061 ctgcaaaagc ggaaatatcg cccgattgcc ctttgccttt ttccggtttg aacatatagc
     3121 gaaaggcttg ccctagttgg cttaattgaa tacctttgag tgaaaaggtt aaatataacc
     3181 ctacgcctga aattaaaatc aggagtggcg ggccccaaac aaaactgttg atttgattaa
     3241 gaatagtgtc gatagacatt tgatgttcct cgtaaaaact gcttacaagg aaagaaaagg
     3301 aatgcaagag acaagcggtc aaaaaacgga aattttttgc aaagaattag caaaaaaaca
     3361 ccgcttgtat cgtataactt ttctcccctg tccttttgcc tgagcgtttc acacattgct
     3421 gtattttcgc cttcggcggc ggattttaat ccgctctctc caagggttcg tccagtaaca
     3481 gtccccgcag tgttcactgc acctgaaaga gtttacctcg tcggtgaaat gttaattcat
     3541 ttctctccag ctaccttcat ccgaacaatc taatttattt tataatgtaa aataaaaaag
     3601 atttgccaaa ttctagcaac tcttttgctt ccgtcaagtg aatttaacga tatttttgtt
     3661 ctttcggtac ttcttctaaa tcgctaaata atacggcata tttttgggtg gctttattgg
     3721 attctaatgc cactttacac gccatcgtaa gtggaacaga aagtaacatt cctacggtgc
     3781 caagtaacca cccccaaaat agaagtgaga ggaacactac aagggtagaa agcccgagtt
     3841 tcttgcccat taatttaggt tcaagcgcat tacccacaac catattaatc acgacaatgc
     3901 cgattaaagt gcctaatcct atagaaaagc cattgagtac caaggcttga atcacaattg
     3961 gaattcccgc caaaatagag ccgatattcg ggacgtagtt aagcaggaag gttagaattg
     4021 cccataaaat cgcatattct acgcctagaa tttctagtaa gatccaaact aaccctccgg
     4081 tgagtaggct cacaaaggtt ttaactccaa ggtaaccaat caccccttca agtacttggt
     4141 tgatatactc tttttcgttg cttaaatcat catctgggct aagtgcgagg gctaatttat
     4201 atttggcaac cggcatttcc aatagcataa aaatgacgac taagaaaatc acaaaaatat
     4261 tcgataatgc accggatagc cccattagca gtttgctgac caaattcatt attgagcttg
     4321 ggtcaaattt gctcataatc tcttcttgtg agagggtaag tggaatatgc catctatggg
     4381 cgagttctag aatcacctgg attctagatg aaagctgaat tttgtattgc ggaatagcat
     4441 tagtaaattc ttgcaaggtg ttattaataa tgcctgctaa gaaactgaat cctaagataa
     4501 aaacaataag taaaatggta atggctaacc ataatggcac tttacgctta gtcataaatt
     4561 tgatcattgg tgaacaaata atggcaataa atagcgaaag taaaaatggc acaacaattt
     4621 cattggataa tttaatccct gccagaataa tgataatgga ggctatcgcc acgagagttt
     4681 tggtggaatg tgtcataatt tttcctttta caagcggtta aaaatcagca attttttaca
     4741 aattagtgat tctcaaacca actttctaaa attaaacaag cggaaatgga atccacttta
     4801 tcctttttta atgctttgta accaccacga gaaaaaattt ccgcttttgc ttcaacagta
     4861 gtgaggcgtt catcttgtag ctcaaccggc agattaaagc gtccgtttaa gcgattggca
     4921 aattttctgg cacgctgagt taaaggctgc tctgtgccgt ccatattcaa gggtagccca
     4981 acaaccagca tatctggttt ccaatcttgc aagagttttc cgatctcttc ccagtttgga
     5041 ataccgtctt gggctttaaa tgtagttaaa ccttgagctg tgccggtaat actttgtcca
     5101 actgcacagc cgatgctatt tgtgccaaaa tcaaaggcaa tcacggtttt tgttgtggtt
     5161 tctgtcatta agctctccca gctcttgacg gtatgcttga aagccccatc atttcatagg
     5221 cttctgccca acgctctaaa taaccggttt caaacagcgt tttttcattc gcatcagaca
     5281 caatccaata attttgagca atttcttgct caagctggct gccacgccaa gtggaacaac
     5341 ctaaacacac aataaatttt tcaggtgaag ccagtgtgcc aaaggagtct aacacatcac
     5401 cggaggtagt gagcgtaatt ttatcggtga tcggataagt gtgaataaaa tcattggcgg
     5461 ttttggtgtg aataataaag ccacgatctt gatttaccgg cccaccgctt aacaccattt
     5521 ggtctttttt gtaatcacgc tggttcgcca tttggaaatc cattcgggta atcagctcta
     5581 gaaccgacag atcggtagga gtgttaatta ctactcccat tgcaccttgc ggattatgtt
     5641 cgcaaatata gaccaccgta cgctcgaaat agtcatcgtc catttccggc gtggcaatta
     5701 aaaatttacc ttgtaaattc tctaacatta aatatctcca aaacaaactt gtaacgcagt
     5761 aattgccgca agtgaggcgg tttctgtgcg taacactcgt ttacccagta atacttcagt
     5821 aaaaccttcg ctctcggtca tggcgatttc ttcggcagat aatccgccct cagagccaat
     5881 cagtaaacga acaccagctt tcggcacatt cggcagttca cgaatggtat atttggctct
     5941 tgggtgcaaa ttcagtttca acatatcgtc ttgttctttg caccagtcgg tgagtttcat
     6001 aatcgggcga atttcaggga tttcatttcg tccgcattgt tcacaggcgg caatcgcaat
     6061 tttctgccat tgctgtaatt ttttatcttg ccgttcatca ttgagtttca cgccacaacg
     6121 ttccgaccaa agtggggtaa tagtttttac ccccagctcc accgattttt gaatggtaaa
     6181 ttccattcta tcgcctcggg aaatcacttg ccctaaatgg atcggcaggt tggattctcg
     6241 gtcatctaat tcacttgaat caatttttgc aataatttgc tttttttcga ccgcttgtaa
     6301 cgtagcgtgg aaaacgtggt ttgaaccatc aaataaaatg atttgctctc cttgtttcat
     6361 tcgtagcact cgcccaacgt ggttagcggc atcttcactt aacacgcaac tttgaagacc
     6421 agctaacggc tgtggttggt aaattcttgg gattctcata attatctagt tataaattaa
     6481 aggcagacga ttgtctgcca taggtaagtt aaaacgggtt aaggataaag tcttgaacaa
     6541 tgcacaatag taataatcga aatttcattc tctttaactt cacacactat tctatagccg
     6601 ttatgatata gttctctcgt attaataatt gcacctttta cacccattgt aggaaaaatg
     6661 gctaaattat taatactatt ttccaattct tctagtatcc taattccact acttgcataa
     6721 ccggtaaatt cactaactga gatggcaata ttctctaaat ctattaaggc ctcttcagta
     6781 taataaatat tatgcaactt ttttggcatt ttcagcacct ctaaaagcgg cagcaataac
     6841 tctttttctg acctcttcgg gtgaataaat ccgaccgttt ttaatatctt cctttccttg
     6901 ctttactttt ttagcaagat aatcaagata ttcttggcta acattatgat aaggattatt
     6961 catatttttc ctccctgcga tgagtctcta ttgtgggggc tactgatcgt ttaatcaagt
     7021 taatttatct tatttttcga gccacatcac aaaacgagaa aacaacaagc ggtcattttt
     7081 ccacgttttt tgcaaaaaat cgaagaaaga tgaccgcttg ccagaaaaaa ttaattattt
     7141 gaactggtga attgcattgg cgatttcatt atcgttgtaa atagctttca ccacatcaga
     7201 ataggcttgg tctaacactt tcttgatttc atcattgctt gcaccaaatg caccttcgta
     7261 accacgggta gcgttgaagt ttttgctaaa gtttccttta gaaccttgca ctgccacttt
     7321 tacactcact tgtgcatcgg ctttgtagcg taagtttcct tgttctactg tggcaaagaa
     7381 tttacgaata ttcactacca cattggcatt cgctgcacct tgtacaattt ggaaaccttt
     7441 tgcattcagg tcttgttgga cggcttgttg gaacattgca gcaacttcag gcactgcggt
     7501 taaacgaatg acctctccgt ttttagtgta gcttgcgatt tcacgcgagg tgcgtaaatc
     7561 ttgtgtcatt acattcaccg cagccgtttg attgtttgtg ttaaatacag cagttggcgt
     7621 tggggtagag aatgttaatg tgttggattg gctttggcag ccggctagta atgcggcaac
     7681 aaaagtagtg gctaacacta acgttttttt agagcgtttc atagtaaatc cttctatatt
     7741 gaataaattt cgagaaaatt tctgcttagt atagtattat ttcgttttga ttttcaatga
     7801 acgagagcaa aaaatgtcgg tagaacagac aattattcaa aaaattaaga cagaatttca
     7861 gccgattttc tttaatgtcg aaaacgaaag ctatatgcac agctcaggta gaggagcaga
     7921 atcgcatttt aaattaactt tggtgtcaga taaatttgaa gggcagagaa cagttgcacg
     7981 tcatcgtgct gtctatgctt gcttagctga ggaattagct aatggcgttc acgcacttgc
     8041 tttgcaccta tatacccaag gtgaatggga agcgactggc ggacttgtac ctaaatcgct
     8101 aaattgctta ggtgttgggc aataagtgga taaaaatgat ttattttatt ttgtgaagaa
     8161 aatacttgaa agagccgtgt aaaattgcta tatttacgcc atctttttgt tgattcggtg
     8221 agatgtccga gtggttgaag gagcacgcct ggaaagcgtg tatatgggaa actgtatcgg
     8281 gggttcgaat ccccctctca ccgccattca tactgaaaga ttccttactg ttttcataga
     8341 tatttccttg gttaagttaa agtagataat actttttcat ttttaggtta tccccgagca
     8401 aacattgctt gggggttttt ttatgcgatc ggcgatagat tacaaagaaa aaggattcct
     8461 aagaatcctt tttatctgct tttaacgtac tttacctagt ttatagttat tgctgttttt
     8521 taccgtgttg ccatttgggt cgcaaagttc aacgtgttgt tcagacactt ggaaggcaag
     8581 attgcctgat gctttttcca gacgaatcac atttggctta ttgggttccc aactgtatgt
     8641 gcctttgtct cggtaagtgt attctttttt atctttaaaa tataccgtat catattggta
     8701 ggttttatct gcatttaagg ttagctgggc ttggattttc tcacagtcag cacacggtaa
     8761 ttcacctgca taagtaccgc taacgctttt ttgtggtagc aatgagcaag cccctagcat
     8821 tgcggtggta aaaccaatga gtgcgatttt tttcatacta ttttcctctt caaaattaaa
     8881 ttatgtaaca ctcggattta ctctaaattc aagttgggtt atttcaggta aatcggtttg
     8941 tatctgtttt agtaacatat tttgttgcaa gattaaacct tgccgtacgg ttgcattctt
     9001 aacgctcaca ataagctgat tatcaactaa attcactact cggtaaagcc cacgataaga
     9061 ttctggccat cttttctgaa ttttttggtt taaatcgtta atgaagtttg ctttttcgac
     9121 aatacggctt aagcttgagt tctgtaaaat gtcattaatc tttttaggtg ctgaattttt
     9181 catctgtttc tttacatttc gtcttatttt aggcttgatt ttacgatact tgacccaata
     9241 atttactcat tcggctttac tttagcgtat aattagccca attttttcat ttatcttaat
     9301 ttaatgagct tatttttaaa acactttcat cgaacgcctt tttggtcgca actctttttg
     9361 ggaatggttg cgatacttgc tttacctgaa attcaggttg cgtacgccaa tgaaagtgaa
     9421 caggaaaccg ttcttaatca atcttttctt caatatgctc aatccgctaa tgatattgag
     9481 caacaatcgc tttttattgc agagttaatc cataaaattg tggaaattaa accacaagcg
     9541 gtgcattttt gcgaattttt tgcaaactcc taccgcttgg atagacaaaa tgcttacccc
     9601 attcgagccg ggccacaaac ctaaatataa tttaatttta ccattaattg attaacccat
     9661 ttttatattt aggaataaca caatgatttc aaaattactg acttctattt ttggctcaag
     9721 caacgatcgc actttaaaac gtttaagaaa gcgagtggca caaattaata agcttgaacc
     9781 aaccttcgag caattatctg atgaggcgtt aaaggataaa acagcggagt ttaagcaacg
     9841 ccttgcagat ggtgtatcgc tagatagcct attacctgaa gcttttgcga cagtgagaga
     9901 agcaagcaaa cgagtattag gtatgcgacc atttgatgta cagctgatcg gcggtatggt
     9961 gctaacgggg cgtaatattg cagaaatgcg tactggggaa ggtaaaaccc taactgcaac
    10021 tttatcttgt tatttgaatg ctttgaccgg taaaggtgtt catgttgtta cggtgaatga
    10081 ttacctcgcc cgccgtgatg cggaaaccaa ccgtccgtta tttgagtttt taggcttaac
    10141 cgttggagtg aatattccgg ggttaccttc cgatgcaaaa cgtgctgcat accaagcaga
    10201 tattacctat tcgactaaca gcgaattagg ttttgattac ttgcgtgata acttagctca
    10261 cgataaaaac gaacgtttcc aacgtgagtt acactacgca ttagttgatg aagtagactc
    10321 tattttaatt gatgaagctc gtacgccgtt aattatttca gggcctgcgg aagatgcgac
    10381 ccaaatttat caagcggtag atcaaatcat tccgcatttg attgctcaag ataaagaaga
    10441 cagtgaagag tacaccggtg agggcgattt taccttagat ctgaaaaaca aacaggctca
    10501 tttaaccgag cgtggtatgg tgaaagtaga ggatttctta actcaaatgg ggttaatgga
    10561 agagggcgaa agtttatatc accctgctcg tatttcgctg ttacaccatg tgagtgcagc
    10621 attgcgtgcc cataaattat ttgaacgcaa cgtagattac attgtaaaag acggtgaaat
    10681 tgtgattatt gatgagcaca ccggtcgtac aatggctgga cgtcgttggt ctgacggctt
    10741 acaccaagcg attgaagcta aagagcgtgt ggctattcag ggcgaaaacc aaactgttgc
    10801 ctcaattact taccaaaact atttccgttt gtacgaaaaa ttagccggta tgactggtac
    10861 ggcagacacc gaagcctttg aattccagca aatttatggc ttaaatacgg tggtgattcc
    10921 aaccaacaga ccggtgatcc gtgatgaccg tacagactta atgtttaaaa gcgaagcgga
    10981 gaaatttgcg gcgattatta ctgaaattag agactgtatc gagcgtaaac agcctgtttt
    11041 ggttggcaca gcatcggtgg aaaaatcaga gttattatcg gcagaattaa ccaaagccgg
    11101 tattgctcat aacgtattaa atgcgaaatt ccacgctcaa gaggctgaaa ttgtagcgga
    11161 agcgggagct ccgggggcgg ttactatcgc aaccaatatg gctggtcgtg gtacggatat
    11221 tgtgcttggc ggtaactgga aaatggaagt agccaagctt gagaacccga cacaagaaca
    11281 aattgatgcg attaaagctg cgtggcaaga gcgttatgac atcgtaatgc aagccggtgg
    11341 tttacatatt attggtacag aacgccacga atcccgccgt atcgacaacc agttgcgagg
    11401 tcgttctggt cgtcaaggtg acccggggtc atcacgtttc tatctctctt tagatgatgc
    11461 cctaatgaga atttacctca atgaaggtaa attaaatatg atgcgtaaag cctttaccga
    11521 agaaggtgaa gcgatggagt ctaaactgtt aaccaaagtg attgcctctg cacaggcgaa
    11581 agtagaagcg cataactttg atgggcgtaa gcatttatta caatatgatg atgttgccaa
    11641 tgaacagcgt aaagtaattt acgaacaacg caatcatcta ttagaaacag ataatattgc
    11701 ctcaatgatc gaaagcattc gccaagatgt atttgaaagc acgattaacc aatatattcc
    11761 gcctcaatct atcgaggaaa tgtggaatgt gccgggctta gaagagcgtt tacgccgtga
    11821 atttgggttg gatttaccga tttctcactg gcttgaaact gaaaaagact tgcacgaaga
    11881 gactttgcgt gaacgtatct taaatattgc gattgcagag tacaatgcga aggaagaaat
    11941 agtaggcgca gaggtaatgc gtaattttga aaaaggtgta atgctacaaa acttagatga
    12001 gctttggaaa gagcatctag cctcaatgga ttatttacgc aaaggtattc acttgcgtgg
    12061 ttatgcacaa aaagatccga agcaagagta taaaaaggaa tcttttgcga tgtttaccaa
    12121 tatgcttgat accttaaaat tgaatgtaat tagcatttta agccgtattc aagtgcgtag
    12181 caaagaagag gtggaagaag cgcaacgcca gcaagctgaa atggacgctg caagtacgcc
    12241 agttacacaa gctaccgatt ctgctgctgg tagtagagaa gaaaatagcg cagagagctt
    12301 aagtgaagaa gagttggcaa acttaaatat tggtcgaaat gacccttgcc cttgtggttc
    12361 gggcaaaaaa tataagcatt gccatggtaa caaagcgaga tattcgtaat taacaagcgg
    12421 tcatattcag tcaggaattt gcaaattttc tgcttaatat gaccgcttga atttatagaa
    12481 agagtgaagg aaactatgtc aaaaccgatt attcaagtct cagcagggat tattcgtaac
    12541 gaatttgggc aaatttactt aacccaacgt ttagaagggc aagattttgc tcagtctctt
    12601 gaatttcccg gggggaaagt cgatcccaat gaaacccctg aagaagcact aaaacgagaa
    12661 ttagaagaag aaattggtat tcaagtgtta agcgcttttc cgtatgaaaa tttttgcttt
    12721 gaatatccaa caaaaatcat tgaatttttc ttttatttgg tggaagagtg ggtaaatgaa
    12781 ccttacggaa gagaagggca agaaggtttt tggatcgcac aatcggattt agatgaggga
    12841 gctttcccac cggcaaatgc ccaattaatt aaacgcttaa aagaacacgc ataatttgta
    12901 ttgagaactg tatctaaagt aa
//
LOCUS       DANLXB010000066        12822 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLXB010000066 DANLXB010000000
VERSION     DANLXB010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(54..2966)
                     /gene="rapA"
                     /locus_tag="PXD41_001240"
     CDS             complement(54..2966)
                     /gene="rapA"
                     /locus_tag="PXD41_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL6288775.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            complement(3127..3426)
                     /locus_tag="PXD41_001241"
     CDS             complement(3127..3426)
                     /locus_tag="PXD41_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288776.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            complement(3547..4872)
                     /locus_tag="PXD41_001242"
     CDS             complement(3547..4872)
                     /locus_tag="PXD41_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL6288777.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            4957..6276
                     /gene="rlmD"
                     /locus_tag="PXD41_001243"
     CDS             4957..6276
                     /gene="rlmD"
                     /locus_tag="PXD41_001243"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL6288778.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            complement(6416..7597)
                     /locus_tag="PXD41_001244"
     CDS             complement(6416..7597)
                     /locus_tag="PXD41_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL6288779.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(7587..8288)
                     /gene="rsuA"
                     /locus_tag="PXD41_001245"
     CDS             complement(7587..8288)
                     /gene="rsuA"
                     /locus_tag="PXD41_001245"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL6288780.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            complement(8533..9504)
                     /gene="menC"
                     /locus_tag="PXD41_001246"
     CDS             complement(8533..9504)
                     /gene="menC"
                     /locus_tag="PXD41_001246"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL6288781.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            9716..11794
                     /gene="metG"
                     /locus_tag="PXD41_001247"
     CDS             9716..11794
                     /gene="metG"
                     /locus_tag="PXD41_001247"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL6288782.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            11804..12220
                     /gene="ndk"
                     /locus_tag="PXD41_001248"
     CDS             11804..12220
                     /gene="ndk"
                     /locus_tag="PXD41_001248"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL6288783.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(12276..12752)
                     /gene="greA"
                     /locus_tag="PXD41_001249"
     CDS             complement(12276..12752)
                     /gene="greA"
                     /locus_tag="PXD41_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL6288784.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
BASE COUNT         3673 a         3022 c         2552 g         3575 t
ORIGIN      
        1 aagtgatttt ttcgacacag atcgaaaaaa tcacttttcg tacttgcaaa aaattacgct
       61 ttattactta caatcactcg caagctatct aagcgataat ttgccgtttc aagttgggca
      121 agggaagcgt taagctgttg ttctaaggct tcaacttcat cggctcgaat atttttattc
      181 accattttga gtgattccaa gcggtgtaat tctgctttta atttgctatt tgcctcaaat
      241 ttggcagttt caatcacctg ttggacctga ggttctaccg ctttttcact cgctttaatt
      301 aatttttcaa tatccgctcg agccattttg gcaattttat ttgccatctg tttattcacc
      361 ggttttaatt ggcgttcaag cccggcaaaa gagacctgcg gagcaatatt gttgcctttg
      421 ttatccacta aaacccgaat cggggttggc ggtaggaaac gggttaaatt tagccctttc
      481 ggtgcttgtg cttccaccac ataaagcgcc tcaagtaata atgtaccggc aggcaattta
      541 ttattcacca gcaatgagat tgctgatttg ccaatatcgc cggaggtgat taaatcaata
      601 ccattgcgga tcatcgggtg atcccaagtg agaaattcca cctcttcccg cattaacgcc
      661 agttcacgat taaaggtaat ggtcgtgcca tcttccgata gccccgggaa atcaggcaca
      721 agcatatgtc cggttgggct aatcacaatg ctctgctcgc ctaaatcttc ctgttcaacg
      781 ccaatcacat caaacaaact caaggcaaaa ttaaccaact gcggattatt atcttctttc
      841 gcaatatcat tagcgagctg ttgagctgct tctccgccat tagaattcag ttctaataat
      901 ctgtcctgtc ctttctccag ttcggctttc aaatactgtt ggcgtttata ggttttcgca
      961 acaaaatcat caaattgggc tgaaagttca ggtttttgca ggaattgttg caattcttca
     1021 cctaattcac ggaagatcgc tgttcccatc gggcaggttt cttcaaacgc attcaagccc
     1081 ttgtgatacc actctgccaa catctgttga gccgataaat taaagcaagg cacataaatc
     1141 tgaatgtcat ttttctgtcc gatacgatct aatcgcccaa tactttgctc caataaatcc
     1201 gggttatccg gcaaattaaa cagcactaaa tctttagcaa attggaaatt tcgcccttct
     1261 gaaccgatgc ttgaactaat cagcacctga gcgccttctt cttgttgagc aaaataggcg
     1321 gcagctttgt cacgttcaac aatcgacatt ttctcgtgga aaacggcaga acgaatcgcc
     1381 tcacgctcac gcaaaacttg ctccaaagca atcgcagtgt ccgcctgttt gcagatcacc
     1441 agcacttttt catcacgatg attttttaag aaagtgatga gccaatcaat ccgagggtcg
     1501 aattcagccc atttcgcatt cgggttcatt cgttggaaca aatattcagg atagagcaaa
     1561 tcactttggc tcacactccc catcattccc atcactttta acgcattttg gtattgtttc
     1621 ggcatttcta ggctgatttg gtggtattcc cgatgtggga agcctttcac tccctgacgg
     1681 gtatttctaa acaacacccg gctggttcca tggcggtcaa ttagctcact aatcagctct
     1741 tgacgggctt gcaagcggtc attttcgtcc gattttttgc tattaattgc acggaacatc
     1801 ggctcggtat cttgctcgct taacagctcc gcaatcgcat tctgctcgtc attacttagc
     1861 ggtttatcgc ttaataagct actcaccgca tctgccaccg gtttatactg tgcttgctcc
     1921 tgtacaaact cggcataatc ataaaaacga tccgaatcta acaacgccaa gcgggcaaaa
     1981 tggctctctt gccctaattg ctccggtgtt gccgttaaaa gcaagacggc aggaatttgt
     2041 tgagataaac gctctaccaa ctgatagccg atagaagatt cggtttccga ccattctaaa
     2101 tggtgagctt catcaacaat taatagatcc cagtcggcag caagcacttg attggctcgt
     2161 tgcggtgagg tttccagcca gtttagtgaa gtaatgacta acgcttcgct ctcaaatgga
     2221 ttttcactta catcatcgcc attttcatct tgtttatcaa aatcactaca acgttcttca
     2281 tcgaataacg agaatttcag attaaaacgg cgaagcattt ccaccaacca ttggtgttgc
     2341 aaactttccg gcactaatac caatactcgt tctgctctgc ccgaaaatag ctgttgttgc
     2401 aaaatcatac cagcttcaat agttttaccc agtcccactt catcggctaa tagcacacga
     2461 ggagcaaggc gttgcccgac ttcttttgca atatgtaatt gatgtggaat caggctggct
     2521 cgaatgcctc gcaaaccacg cagtggcgac tgatattgcg cttgctggtg ctgcaaagcg
     2581 ttaaagcgta atgcaaagcg atctgagcga tcaatctgag ccgaaaaaag gcggtcttgc
     2641 ggtttgctga aactgatttt atgatcgagc aacatttcag gcagtaccgc ttcttcaccg
     2701 ttatccaccc ttttgcccaa atagattacg gcaccttgat tttccacaac ctctgaaacc
     2761 tctaactgcc agccatctat actgttaatt ctatctccgg cttgaaactg cactcgagtt
     2821 aaaggtgcaa ctgcaattgc atagacccgc tcttcttccg ctgccgggaa attgatagtg
     2881 acagtgcgat gatccaccga agtcacgatt cccaaaccta aattattttc cgattcactt
     2941 agccaacgct gaccgactaa aaacattttt tcctctaagt aataagtaaa agcatcatta
     3001 ttgtcattta aacggctatt ttaccaaatt ccgggaccgg tcggcttgag tatttttgca
     3061 aaaaagcaca ataaaaagac cgcttgtgcg gttaaatcac acaagcggtc gttttaaggg
     3121 gtaaatttag tttttatcta aatctagatc tgccttatat tcaatccgat ttctaccttt
     3181 tacttcaatt tcaatatcca gctcttggtc accacgtttg aattttaaat cagcatcatc
     3241 tctatgaata tcagattcta ctaaatggaa acctttacgt ttagcgtggg cgatcgcact
     3301 tttcgctaag ccacgaacat cattaccact gacacgatat tctacttcaa actcaccatt
     3361 accttgacga tctgctttaa ctaattcgcc acgaggctga taaatttcac ttggaagaaa
     3421 ccgcaaatgc tgttgcagaa gccaaagttg ctaatactaa aagaccttta gaaacagttt
     3481 tcattgaaat ctcctattaa ataaatgaaa cctattactg agaccttgca aaattaacaa
     3541 agttcattat aaactttcaa aaagtttaaa cgcctgccca tcagacatac cggctaaata
     3601 gtcgcaaatt acccttgcac gcttagattc ttccgcattt ttccaacgtt cccgcacatt
     3661 attagggagt aatcgcatcg gatcactgct taaaatatcg aacaattcca ttagaatgcg
     3721 ttgccccttg cgttccaccc gctgggtttt ggcatcacaa atcacatatt gatacacaaa
     3781 atctttcaag attttcagca cacaggcaac actttccggt aaataggcat tataacgtag
     3841 caacggctcg tcaaattcag gcagagcttt ccaacgcaca ttggtaataa aatgattcac
     3901 taatgccccg atcacatctt ttcgctcgta gcggtgctga gaaaagagct tttcccgaat
     3961 ctccggcagg cgttgtttca cccaatcgga ttggcactcc gccagcaatt tttccgcatt
     4021 ttgccacgat tgcggtgtga ccattccacc tacaatcgca tcttccaaat cgtgtacgcc
     4081 ataggcaata tcgtccgcta gttccattat gctgcaatcg agagatttat attgcgtttt
     4141 gtttggctgt ttcggatctt gattgggctg aaccgtgcaa aattggcgtc ggtctttttc
     4201 acttaacggg gctaataccc actcaaaaaa gtggttgttg tcatcaaaaa tccctttgct
     4261 ctgtggaaaa tggtgcaaat taatatgccg agcctcgctc atttctgccg gctcaatcgg
     4321 cgaggtttga gacaagagtg ccggatattt cattaccccc agtaaggtgc gacgggtcag
     4381 attcattccg gctgtttcgg tgtaaggctc aagctgggtc ataatccgaa aggattgagc
     4441 attaccctcg aagccgccaa aggcgtacat tttataattt aacgccattt caccaccgtg
     4501 cccgaacgga gggtgcccga gatcgtgggc aaaacaaagg gattccacca agctatgatc
     4561 cggcaataaa gcggtcagat ttgccatatt ttttgcaaat tcctgctccg aacagaccgc
     4621 ttgaaagcct tccacatccg ctaataattt ttctcgcaaa ctgctaccga tttgagccac
     4681 ttccaacgaa tgggttaaac gggttcgata aaaatcatct tcccccacgg cgtgaatttg
     4741 cgttttcgcc tgcaaacagc gaaaagcctc cgaatgcaat aaccttgccc gatcccgctg
     4801 aaaaggcgag cggtgatctt gttcccgttt tttatccgcc aaataacgtt cattccaaac
     4861 cgatgaaatc atattgcctc cattttccgc caactgcttt tcttatataa tctccccatt
     4921 tcgacacttt atatcataac aattcatctg aaaacaatgg ctatttttta ttctgaaaaa
     4981 tcggcaaaaa aaccgataaa atcacccgct tgtcaaaagg caactattca atcgttagat
     5041 tatcaaggct tagggattgc caaaatcaac ggcaaaactt ggtttatcga aaatgccctg
     5101 cctgatgagc aggtggaatt taaagtgttg gaagagaaac gccaatacgg acgtggacaa
     5161 gcggttaaaa ttcttaaaaa atctgcaaat cggcgaatgc caagctgcga actttacggg
     5221 caatgcggtg gctgccaaat gcagcatatt tcgcttgaac tgcaacgtaa ggcaaaacaa
     5281 caggctttat tccaacgctt acagaaattg caaacccacg ctattgatgt tcagccgatg
     5341 attatcggca acgataaaca ctaccgccgt cgggcaaaat taagcattgc gatccagcaa
     5401 ggcaaggcgg taatcggctt tcgtttgcaa aattccaacc aaattatacc gcttgcacac
     5461 tgtgaagtgc tggttgaacc gcttgccaat ttgctcccaa aattaaaaca cctgattgaa
     5521 aactggcaac agccgaaaaa attggggcat attgagctgg tcagtgcgga caataccatt
     5581 gccctatttt tccgccattt aggggcatta tcggcgcaag ataaccacaa tttgcgtcaa
     5641 ttcgccacac aagagcaatt atctcttttt gtgatgacta gcgaaaatca cattgagcat
     5701 ctgtgcggtg aacgcccgta ttatcaaatt cagggtctaa agttgcattt ttcaattcgg
     5761 gattttattc aggtgaatgc cacgctcaat gaaaaaatgg tggaaaaagc ccttgagtgg
     5821 ctggaattat ccaaccaaga tcgagtgtta gatctcttct gtggaatggg gaattttacc
     5881 ttgcctattg ctgagcgagc gaaatcggtg gtcggtgtgg aaggggtaga accaatggtg
     5941 caacaagccc gagagaatgc ggtgacaagc ggtctaaaaa atgtggaatt ttaccaaacc
     6001 aatttagatg agccgttttc tgacaaacct tgggcaaaag agccgtttaa caaggtacta
     6061 ctcgacccgg cacgcaacgg agcactattt tgcctagatc acttgacatc actcaatcct
     6121 gagcggattg tttatgtctc ttgcaatccg gcaacactgg tgcgagatgc cgaaaaactg
     6181 ttgcaactag gctacaggct agaaaaagcg gcaatgattg atatgttccc ccacaccggg
     6241 catttggaat ctatttcgct gtttttaaaa tcttagtaga tattgccccg atggtgcgag
     6301 cgtccacgct cgtaccacac aagcggttaa ttctgcctaa aaatttgcaa aaaatgtact
     6361 attattaacc gcttgtagaa atttgttggg ttttcgcaag ctaaccccaa cctagttatc
     6421 gcttataaca cagaaaataa tacaccacac cggctaacat aacgcacaat gccatcgcca
     6481 aaagcattgg ggcagcactg gttacagcaa tatgtgaaag ccctgctcca acaagggaag
     6541 caacaccaaa acgagccgta cctgctactc cgttagccgt gcctgccatt tgtggaaatt
     6601 gctctaaaat ggcggcactg gcattactac caatggtgga aagcattccg atataaagcg
     6661 gaataccgat tgccattgcc cagaagccta aatcaaaaat cgccactaaa gccagccaaa
     6721 tgccggctaa cagttgcata gctaaagcaa ttcgtaacat cgtttcagag ccgactttca
     6781 ctaccatttt gctgttaatc gccgtcatcg tcaccatcac aatcatattc agcccgaaga
     6841 aatagccgaa attttcttgc gacacgccat aaagcccaat atagacaatc gagcctgagg
     6901 ttaaaaaaca gaaaatacct gcaaaggtta agccgccaat cagcacataa ccaagagtag
     6961 gcctatgttt cagtaagatg gcaaaattgc ttaaagtttt gccaaaactt aacggcaggc
     7021 gtttttcggg ggctaatgtt tcagggattt tccaactaat taataccacg cacaaaatcc
     7081 ccatcgccac taacacatag aaaattgagt gccagtggaa atatttggca atataaccgc
     7141 caacaatcgg tgcaagcaat ggggcaagca tagaaataat cataataacc gacatcaatt
     7201 tggcaaataa attacgctca aacagatctc tcactaatgc tcccagcacc accgccgggg
     7261 ctgccgcaca taagccctgt actaacctta gcaggtaaaa tgtttcaata ttctgaactt
     7321 gggtcagaaa ataagcggca atcgccgagc cgactaatcc gattaaaata atgattttcc
     7381 gcccaaagct gtctgccatc ggtccccaga atagttgccc tgccccaaaa cctagggtaa
     7441 ataccgccaa ggtggtttgc actttttctt gcgaaaccgc caagtcacgg gcaatgtcta
     7501 aaaatgaggg caaatacata tcaatggcta atggtggcaa cattgccatc atacctaata
     7561 tgatgaaaaa gctcaggctt ggtcttctac tttccattaa aactggctat ctcctctgaa
     7621 gtgagcgagc ggaattcacc ttcttccaac ctttcatcta acaccacatc gccaattcgc
     7681 cagcggtgca atgcctcgac tttattccca agggcggcaa acattcgctt aacttgatga
     7741 taacgcccct cactaatagt taaattcaca ttgtaatcgt ctaaaatttc aagttgagcc
     7801 ggcaaggttg gctctttctc gccacgcaat aaaattcctt ctgccaatcg ctgtgcataa
     7861 aaatcttcca ccggatcagc aagcgtcact aagtatgtct tttcacaatg gtgcttgggc
     7921 gaggtaatac ggtgcgacca tttgccgtca tcggttaaca gcaccagccc tgtggtatcc
     7981 acatctaacc gccctgcggt atgcaattta gtcattaacg gataatcaaa gaattgaaac
     8041 accgttgggt actcaccatc atcgtgtgaa caaatatagc cctgtggctt atagagcata
     8101 aaatactgcc cctcttccac ccactctaat ttctgatctt cgtaataaat ttcatcttct
     8161 tgactgattt ttgccgcacc acttttttca atattgccgt ttaccgtcac cacaccactt
     8221 ttcagcactt tagccgcttg tgaacgggtc aaaccggtat tttcggcgat aaatttgtct
     8281 aaacgcatac tatttttata ccataaatta ctttaccctc tcccctcgtg ggagagggac
     8341 agatttttct tcgtctagaa gaaaaatcag ggagaggggg gaaatacgtc ttcgtccaga
     8401 agaaaaatca gggagagggg aaatgtgcaa acttttttag aaaaatgacc gcttcccctc
     8461 tctctgctta tttcgctgaa cgctcataag cggtctctct cccacaaggg gagagagtgt
     8521 ttaattggga gattatacca caacttccct aacaaattcg ctttctagcc cgaccaacgg
     8581 caagctagag tcgtgccaat ctcgcaataa ttggtgttgc attaaattta acgtatccaa
     8641 ccccggcaca ctgtttgggg tgtattgttg ggcgatacga gccagttggg ttaagcccaa
     8701 actgctctca agacttgaac taatcaccgc tactaatcct tgcttctgtg cttgttgaat
     8761 taaattcacg catttttcaa gcgaaccaac cagcgtaggt ttaatgataa tagcggtcaa
     8821 atttggctct ttttttacca aaaaattcgc ctctctcacg gtttcgtccc acgcaatcgc
     8881 aatgtcggtt tgtgtggcaa attggcggga aagttcgagc gcttggcaag gttcttcgat
     8941 aaattgaata cggggtttat gttcatttgc aattttttca gcaaatttga ccgcttgttc
     9001 caagctccaa agacggttgg catcaagcct taggcgtaaa ttcggaaaag tatgcaacag
     9061 caaatttgcc tgctcgcctt cctgttcagg attgagaccg attttaattt taccgattgg
     9121 gttcgtatgt tggctaaatg ccgtgtgtaa cttttccaaa tcgccatagc acagcaccgc
     9181 cgattggtta ttcgcttgct cgcctaattc attattcagt tcagccaacg cacagcttag
     9241 cccaaaggca acagacggga aaagctgctc taacgtttca ggctctcctt tctgccacgc
     9301 ctttaaccaa ttcacagctt ggttttcagc ttgttctagg ctctcttggc taaaacttgg
     9361 aagcggtgca atttcgcccc agccgacttt ctcctgttct tgcaaacaca ccaacacccc
     9421 ttgcctttct ttcaaaggtt gcttgcgtaa cactacaccg gtttgaatgg ggagttggta
     9481 gcggtataac tttacttgtc gcatactatt tttatccaaa ataggtttag aggcgaaaca
     9541 tctttcgccc acatcatcat ttgggaaatt gaggcgaaaa atgtttcgcc tctagcgcat
     9601 catattctac cgcttgttag cccaaagctc taataaattc acgccaactg gtaaacctgc
     9661 cacttttggg ctaaaataga cggcaatttt taccctaatt ttaatgagaa aaagaatggc
     9721 taaccaaaaa cgaaaaatgc ttgttacttg tgccttgccc tatgctaacg gtgcaattca
     9781 tttaggtcat atgcttgaac atattcaagc agatatttgg gtgcgttttc aacgtatgcg
     9841 tggcaatgaa gtccactttg tctgtgctga tgatgcccac ggcacgccta ttatgcttaa
     9901 tgccgataaa ttaggcatta cccctgagca gttaatcgaa aaagccaaag ccgatcacga
     9961 agcggatttt gccagtttta atatcagctt tgataattac cattccaccc acagcgaaga
    10021 gaaccgccaa atcactaccg atatttataa aaccttaaaa gcgaacggtt ttattaaaag
    10081 caaagtgatt tcacaactgt tcgacccaga aaaaaatatg ttcttgccgg atcgctttgt
    10141 gaaagggacc tgcccgaaat gtaaagccga agatcaatat ggcgataact gtgaagtatg
    10201 tgcctctacc tatagcccga tggatttaat caaccctcgc tcggcagttt ccggtgcaac
    10261 tccggtggta aaagaatcag aacatttctt ttttgacctg ccaagctttg agggaatgtt
    10321 gaaagagtgg actcgttccg gctcactcca acctgaaatt gccaataaaa tgcaagaatg
    10381 gtttgaaagt ggtttacagc aatgggacat cagccgtgat gccccttatt tcggttttga
    10441 aattccggac gcagaaaaca aattcttcta cgtttggtta gatgccccta ttggttatat
    10501 agcatcgttt aaaaatttat gcgaccgtgc aggcattgat tttgatgagt tttggcaaaa
    10561 agattccacc accgagcttt atcacttcat cggtaaagac attgtttact tccacagcct
    10621 gttttggccg gcaatgttgg aaggcagcgg ctaccgcaaa ccgaccaatg tgtttgctca
    10681 cggttatgtg acagtggacg gggcgaaaat gtcgaaatct cgtggtacat tcattcaagc
    10741 caacacctat ttaaaacatc tcgatccgga atgcttacgc tattactatg cggcaaaatt
    10801 aaacgatcgc attgaagatt tagattttaa tttagacgac ttcgtgcaac gtgtaaacag
    10861 cgatatcgta aacaaattag tgaatcttgc ttctcgcaac gccagtttta tcgctaaacg
    10921 ctttgagggc aaattagctg aaaaattaga tgacgaagcg ttatttaatg aatttaccgc
    10981 tcaagcagaa accatagcga atttctatga aaaccgtgaa tttaataaag ctattcgtgc
    11041 cattatggaa ttaaccgata aagccaataa atacattgac gacaaagccc cttgggtcat
    11101 cgccaaagaa gaaggcaaag aggctgaatt acaagcggtt tgttcaatgg gcattgagtt
    11161 attccgtgtg ctgatgagct acctaaaacc ggtgttacca aaactggcag aacgtgccga
    11221 agcattctta caaagcgaat tgcgttggga taatatcgct accccattat tcgggcatac
    11281 cgtggcaccg tttaaatcgc tattctcacg ccttgagaaa aaacagattg atgcagtgat
    11341 tgatgaaacc aaagccttat ttgccgaagc gaataagaaa accgaaaacc aaaccaaagg
    11401 aacacaaaaa gtggaacaac aagcggtcga aaaacaagaa aatattgcag ttgagccaat
    11461 cagccctgaa attacgattg atgatttcgc gaaattagat ttacgtgcag ccaaagtatt
    11521 gaactgcgag gctgtgccaa aatcagacaa aatgttacgt tttgagctgg atttaggcga
    11581 ccaccaacgc caagtattct caggcattaa ggcggcctac ccaaatccgg aagcacttat
    11641 cgggcgtttt gtgattgtaa ttgccaacct tgctccacgc aaaatgtcgt tcggtatgtc
    11701 ggagggaatg attttatctg ccggcacagg cggtgcgaac ctgttcttat tagatgcaga
    11761 cagcggtgtt cagccgggaa tgcaagttaa ataggagaag atgatgattc aacaaacgct
    11821 ttctattatt aagccggatg ctacacgccg taatttaatc ggcaaaattt tggctcaatt
    11881 ggaagaaaac gggctgacta tcaaagctct aaaaaaagta catcttaccc gtgagcaagc
    11941 ggaaggattt tatgcggaac acaaaggcaa agatttcttt gagccgttag tggaatttat
    12001 gacatcagga tctattgtcg tttctgtact ggaaggggaa aatgcaatta gccattatcg
    12061 tgcattaatg ggggcaacca atccggataa ccgtgaaaaa ggcaccattc gcgatttata
    12121 tgccttaagt atgcgtgaaa attcggtaca cggttcagat tccgaagagt cggcaaaacg
    12181 tgaaattgcc tacttctttg taccgagtga gattgtttaa taaagtaggg gcgaaaattt
    12241 tttcgcccca ctattgtaat tcgccctagc gtagattaaa tatattctac gccaacaatg
    12301 tcaaactcaa ctttgccacc cggtgtggta atgctgactg aatcgtccac ctctttgccg
    12361 attaaaccac gagcaatcgg ggaattaact gaaattaagc cctctttaat attggcttca
    12421 tcatcaccca caatgcggta agtgacttct tcatctgtat cagcattcac taactgcacc
    12481 gttgccccaa aaatcacttt gccgttgttt gccattttag tgacgtcaat aatttgagca
    12541 ttgcctaatt tgccttcaat ttcttgaata cgcccctcac agaaaccttg ttgttcacgg
    12601 gctgcgtgat actccgcgtt ctcttttaaa tcaccgtgtt cacgggcttc tgcaatcgca
    12661 tcaataattt gtgggcgacg cacatttttt aaaaaatcca attcttcacg cagttgctct
    12721 gcaccacgca ccgtcatagg aatttgtttc attaaatcta tttccttact aaaaattatc
    12781 ggtttacgaa ttaaaacgaa agggctatta ttcaatttct ca
//
LOCUS       DANLXB010000067        12621 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLXB010000067 DANLXB010000000
VERSION     DANLXB010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12621
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            178..1512
                     /gene="srmB"
                     /locus_tag="PXD41_001250"
     CDS             178..1512
                     /gene="srmB"
                     /locus_tag="PXD41_001250"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL6288785.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(1581..1874)
                     /locus_tag="PXD41_001251"
     CDS             complement(1581..1874)
                     /locus_tag="PXD41_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6288786.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(1876..2538)
                     /locus_tag="PXD41_001252"
     CDS             complement(1876..2538)
                     /locus_tag="PXD41_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6288787.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(2522..2974)
                     /locus_tag="PXD41_001253"
     CDS             complement(2522..2974)
                     /locus_tag="PXD41_001253"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL6288788.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(2994..3632)
                     /locus_tag="PXD41_001254"
     CDS             complement(2994..3632)
                     /locus_tag="PXD41_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL6288789.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(3676..3945)
                     /locus_tag="PXD41_001255"
     CDS             complement(3676..3945)
                     /locus_tag="PXD41_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL6288790.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            4037..5146
                     /gene="mobA"
                     /locus_tag="PXD41_001256"
     CDS             4037..5146
                     /gene="mobA"
                     /locus_tag="PXD41_001256"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6288791.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(5201..9712)
                     /locus_tag="PXD41_001257"
     CDS             complement(5201..9712)
                     /locus_tag="PXD41_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6288792.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(9896..10900)
                     /gene="fbp"
                     /locus_tag="PXD41_001258"
     CDS             complement(9896..10900)
                     /gene="fbp"
                     /locus_tag="PXD41_001258"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL6288793.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            11024..11815
                     /locus_tag="PXD41_001259"
     CDS             11024..11815
                     /locus_tag="PXD41_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6288794.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(11883..12572)
                     /locus_tag="PXD41_001260"
     CDS             complement(11883..12572)
                     /locus_tag="PXD41_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL6288795.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
BASE COUNT         3437 a         2593 c         2777 g         3814 t
ORIGIN      
        1 ataaatttca acaaacatat aatgttcctt ctataaagta aaagtgagcg aattgtccgt
       61 taaacggctc tgtgtaagtg taacaatttt ttcaaccttt taggataaat ttcttcacca
      121 tcacggcaag cagttaatgt gatatactgg ggcaaattta caagtagaga aacagagatg
      181 acccaattaa tgacgtttga ggagcttgat ttaagccctc aattacttaa agccttagca
      241 cacaaaggct ataaccgccc aaccgctatt caacaagcca cgattccggc tgcgttagaa
      301 ggacgtgatc tgctcggttc agcccctacc ggtaccggca aaaccgccgc ttttttactg
      361 ccggcaattc agcatttatt agattatcct cgccgcaaac caggggctcc tcgcatttta
      421 attcttaccc caacccgaga gctggcaatg caggtggcgg agcaagccca agcactggct
      481 aaatttactc agttgagcat tgcgactatt accggtgggg tggcgtatca aaatcacggt
      541 gaagtcttta ataaaaatca agatattgtg gttgctaccc cgggtcgttt aatgcaatac
      601 attaaagagg aaaattttga ctgccgagcg gtggaagtgc tgatttttga tgaagcagat
      661 agaatgttgc aaatgggctt cgggcaagat gcggagaaaa ttgcggcaga aacccgttgg
      721 cgtaagcata cttggttgtt ttcagcgacc ctcgagggcg agttattaga ggattttgcc
      781 gagcgattat taaatgatcc gattaaagtc gatgccgaac caagtcgccg tgagcgtaaa
      841 aaaattcagc aatggtatta ccacgccgat aatgtagagc ataaaaccaa attattagct
      901 cgtattatca gcgaattttc ggtggaaaga gcgattgtgt ttgtccgccg ccgagaagat
      961 gtgcgagaac tcagcgaaac cttgcgtaag cggggaattc gttctactta tctcgaaggt
     1021 gaaatggctc agacccaacg taaccaagct attaaccgtt taaaagaagg cgtagtgaat
     1081 gtgttagtgg caaccgatgt ggcggctcga ggcattgata tagacgatat tgatttcgtg
     1141 ctgaactacg atttacctta tagtgcggat acttacttgc accgtattgg gcgtaccgct
     1201 cgtgctggca aaaaaggttc ggcaatttca ttggtggaag ctcacgatta taaattactc
     1261 ggcaaaatta aacgttacac cgaagaagta ctaaaacctc gcattatcga gggcttagag
     1321 cctcgcacca aagccccgaa agatggcgag ctaaatgtga ccagcaagaa agaaaaagca
     1381 cgcattaaga agaaaaaaga ggcgaaaaaa gaagcggcaa aaccaaaagt aaaagtccgc
     1441 cacaaagata ccaaaaatat cggtaaacgg cgtaaaccaa gtagtgaatc ggctgcggtt
     1501 aaacaggcat aatgatacaa gcggttattt tctgaagatt ttttgcaaaa atttcatcaa
     1561 aaataaccgc ttgtttatat ctaccttact gccatttgga acagaatcac ttctgcttgg
     1621 cagctgaaag tgatccacat tttcatcaga aacccttctg caatttgtgt aatttcgctt
     1681 tgaatttcac aaggttcggt ttcgaccgat tttgcttttt gtgcgaaaaa ttcgaccgct
     1741 tgttgagcca gttcttcgct ctcatacacc gcttcaaagg caatttggcg gtctgcatta
     1801 tccaacatag aatcgccttt tagccggcac atattatgtg cctcagccgc tttttgttgc
     1861 atcgttttgc tcatattaca ccttatccgt aatttgtttt aaccaagtgt aggattgatg
     1921 ctgtttttgc tcatcgaaaa tgtagtttac cgccataatt tcatcaattt ccactcgtgc
     1981 ttttagggct ttaagttgtt gttcaacgct ttgcgggcta ccaattaagg agcattcggt
     2041 catttggcgg acaacggttt tctcttgtcg gtatagagca ttttgctcaa aggcaaccgg
     2101 cccgaaatgc ggcacaattt ctgctttcac aaaattttcc cacactttgt cgtcagattc
     2161 gagcggtggt tgcagatttt gttgggcatt ggtcactaca tttaagaaaa actgggtttg
     2221 ggtggtcgcc agttgtgttg cttcttcatc ggtttctgcc acaatggcat tcacacctaa
     2281 aatcacataa ggtttatcta acacatcaga gggcttaaaa tgtgagcggt aaatgcggat
     2341 tgcatcgtcc ataaagcgag gggcaaagtg tgaagcgaag gcgtaaggca agcctcgttc
     2401 agccgctaaa taggcacttt cagggcttga gcctagaata taaaacggca catttagccc
     2461 ttgtgccgga taggcggaaa cagggtttgt accgtcaaag tagcctttta attcgctgat
     2521 ttcatcgggg aaaggcaaac tctgggcgta aggcagaggc ggttcgcata tcggtgccgg
     2581 gggctcgccc aagccccagt tctactcggt ttgggtagag tgtttcaagc gtgccgtatt
     2641 gttctgccac aatataaggg ctgtggttgg gtaacatcac gccaccggag ccgactctta
     2701 atttttcggt gtgggagagg gcgtgttgaa tcaataattg cgtggcggaa ctggcaagat
     2761 ttttcatatt atggtgttcg gcaatccaat agcgttcaat gccgatattt tctgcgtgtt
     2821 ttgctaattt caccatagaa tcgaccgctt gtttggcagt ttgcccttca cgaatcggca
     2881 caaggttgag aatggataag tttgtcattt tgttctccga gtttgcatat aaaaaaggct
     2941 gaatagcttt actattcagc acttgtaaaa ccatctcctt aatatgggga cgattatttc
     3001 ttactcaaga agaccacagc gtcaatatag cgttggataa aatcattggt cgagcttgaa
     3061 tcggaaaatc cttctagatt aagctggtat tgaccattca cgaaaaacgc cggtacacca
     3121 cgaatttgga agtcttcagc taattgaact tgtttattga ctaaaccgtt tactgcaaag
     3181 ctgttgatac cgctgtcaaa ctgttctgca ctaatgctgt tagcgatgaa gaccgcacga
     3241 atatcgtcca ttgatttaaa cgcatctttt tgagcggctt caaacaaggc ggtttttact
     3301 ttatcttccg ctcctaatgc cattgccaat gcccaagcac gggttaagtt ttcagattgg
     3361 cgacctaaga aattgacgtg atattgcact aatttgctgt ctgcaggcaa tttcgctttg
     3421 atttggcttg gaattttgta atttagctca aaatcgtaac agtgggggca gtagaatgag
     3481 aaaaattcca ccacttcttt ttgagccgat ggggctttac gcacctcaat atactctttg
     3541 ccggcagttg gatctgctgc aactgcggtt gcgttaaatg caaaaagggc agaaagagca
     3601 accagtacgg tttttaatgc aaattttttc ataatgattc cttcaaaaat atgataagtg
     3661 agaaataaga caaacttaat cgtttaaaat tccacgagct cggagcaatg cggttttaaa
     3721 atcatcttca taatcttttt taatgcccgg aatcggctca aatttatcgg cgtttcgcat
     3781 tttgagctga taaatcaaaa cctcgtcacg cagggcatga aaattatccg gctcgcttac
     3841 ttccaccgaa agctgttgca gaatatcaat taagtgaaga tcggggtttt tccgccaatg
     3901 ttcgccaagc agttccaata gctcttctaa acgtttgcat ttcatagtat gcctcttaaa
     3961 aaacttgttg aatagtaagc ggaataatat acttttagcc ctcatttggc aaaaaaattc
     4021 aggtttggag agggaaatgg aagagaaaat ttcagcggta attttagccg gaggtttggc
     4081 tcggcgaatg aatggagcgg aaaaagggtt gcaactgtta gatcaaaaac cgttgatttc
     4141 gcacctgtta gcccgacttt cgccacaaat cgaggatatt tggctcaata tcaatcgttc
     4201 ggtggaacaa tatcaacaac tttaccctga attaccttat taccaagaca gcttgcccga
     4261 ttttcaaggc ccactaagtg gaatgctttc cgggttcgag cagattgaga gcgactattt
     4321 actgtttgtg ccttgtgaca cgccgtttat tccaacccaa ctattgcaca agttacacac
     4381 ggcattacgc attaatcagg ctcaaattgc ctatgctcac gatggcgacc gcccacaccc
     4441 aacggttgcc ttggtgcatc gttcggtggc ggaaaattta agagcgtatt tagcctccgg
     4501 cgaacgccga ttattgtggt tttttcaaac ccaaaaaagt gtggcagtgg atttctcggc
     4561 atataaagcc gcatttcgca attttaattg tttagaagat ttaacggctt tcaatccata
     4621 tcccatcaaa accctggcga ttactggcta tagcggcaca ggcaaaacca ccttattgga
     4681 aaaattaatc ccaaaattga ccgcttgcgg tattcgggtt ggcttgatta agcattccca
     4741 ccacaatgtt gatattgata aaaaaggaaa agacagctat cgcttgcgag aagcaggagc
     4801 aaacccgact atggtcgtgt gtgatgaacg ttgggcatta atgacggaaa ctaagcaggc
     4861 agcagaaact aaacaagcgg tcgaattttc acaattaatt gcaaaatttg acccagagac
     4921 ggtagattta gttttagtgg aaggctttaa gcacgaaaca atgccgaaaa ttcaactaca
     4981 ccgtaaagaa attgaaaaac cgttgccggc gttagaccag tggacaatcg cgaccgcaac
     5041 cgattatccg cttgagcggg aaaatcggtt ggatattaat gatgttgaac agcttgctga
     5101 ttttattcgg cagtggctag aggcaagcaa agagccggct aattaattga ctaaaaagcc
     5161 cctaaagtaa gcgattgctt agtttagggg ctaatagcaa ttaccagcta tatcccagtt
     5221 tgaagccggc aaaatgttgt ttgccgattt cgttaccttt caatagacca aggtgagagc
     5281 ttaattgcca ttgacctttt gtaacaccca cgcccacttc agttttcaga taacgtccga
     5341 aacgttggct aaaggtattg tcattgactg ccacactcaa gcgtttgctg ctggcatcga
     5401 cataatgtgc ggcaaggcta ggctcaactt tccagctgga gaggtcaaag gccttgctga
     5461 ctttcacacc tgcttggtag gccataaagt gtgctttcgg gctgcggact tctacttcac
     5521 ccagtttgta attttgtgcg ctgaagcgat agtaacgtgt accaacagca ggctgaactt
     5581 gtacgccggc taagtcgaag ttatgtccaa gatttgcccc aatcgccata atatgacggt
     5641 taaagcggtt ctccccgaac aggtcgatac ggtttttcgc tttaccgtag ctaccgtcta
     5701 ggctgacgaa agtgccgttt tccgaatgcc atttaccata taggcttgcc atcagtaagt
     5761 tggatttacc gttcactccc tcatcaaatt ccgcattagc gtggttgcgg gatagcatca
     5821 caccggcatt gataccgttt gcaagcggta attctatgcc taactgagtg aggttggttt
     5881 gttgctcata cgggcgatat aaatccgatt ggtgttcggt tttttgatgt tcgatactgc
     5941 tccaaacgtg gaatttatcg tgttttgcga acagttggcg atctaagtct tgcccgattt
     6001 gcaacgcaga atttgcctgt gccgatagct cggaaagagc ggtattggca tattggctta
     6061 cccagtcgct ttgttgaata ttactactgt cagtgtctgc gtgtgcttgt agatgctcac
     6121 aatttgcacc attctcttgg caaagtttta gtgcctcagc gtttaaaatt gcttcactat
     6181 ttccagcagt tatacgtaag gtagctaatt ttgcttctac ttgttttgca atattttgtg
     6241 cagtttcaac cgcttgttct acgttagcaa tttgcgcagc ggatgcttta gcattgtttt
     6301 ctgctgtagt gagtgcagca ctcgcttgtg tgactttctg ttttgctacc gtaatttgcc
     6361 cttggatttg gcggtaatac gttggatagt aacggcggta gtaatcagca tattgttgca
     6421 aacgggttaa ttcgctattt gcttggctaa gctgagattg tgcgtttgca gcggcttgtt
     6481 tagcattttt ctctgcttgg cgctctttct cggcttctgc gttcaaacgg ctgatttcct
     6541 gtttttgttt atccgcttct gcaatagcat ggtctaattc cgctttcgcc gttgcaatcg
     6601 actgattccg atctttagca tcttttaacg gattgtataa gcgatagccg ttgcttcgat
     6661 ttgccagcac ataacgatat gcacctaaat caacataacc gttttccagt gaaactttag
     6721 ctttatcagc ctgagcctga tgggttaagg ttaataaact taacgggcta accacttcag
     6781 cttctttgcc actgttgcgt aatgcaagag tgaaagtccc ctcggcgaga ccatttactt
     6841 gtaggtgatc gcctttgcca gcagcaatat cggttaagta gttgattttg gcattacctt
     6901 ggaaattacc gtcaataatc aacgtattaa aacgagtcgg tatctcgcct gttacaaatt
     6961 tttcattcag gttgatggtt gaaccgtttt ctgccactaa attgccagta cggctatccc
     7021 cagtgtttgt ccagcttgct tggttagcta aacgaatgct cgttgttgct gctgcttgaa
     7081 tggtgccaat caggttcgct ttgccgatgt gtaattggct ctgttctgcc aagctgacat
     7141 caccattaat ttgtgttgtg ggcagtgttg caaaaatttc attagaaacg accgcttgtg
     7201 tatcacagct tgttttacca gtgtactcag aatagtagca acttggagtt tgctcgttga
     7261 taaagcctaa atgtagctga gcatggtcat tcgctgacaa gtttgcttgc aggtttgaga
     7321 cattacgacc aacataaagc tgagcgtatt ggtttagctg catattatca gccttaaatt
     7381 gacgattttg ccaatcatcg gcataaacta catcttgctt attgatcgca tcataagcgt
     7441 gaggggtcgg tctgccggaa agtagcactt tacctccttt cacagttaga tcgccgttta
     7501 agttcaaacc accagagaag gtataaatac tattgagctt ttcttgctct attggtgcgt
     7561 ttttacgggc taatactttg ttgatcgctt gattgcgatc tgcagctaaa aattcccaat
     7621 gctcgctgct taagccaccg cgaggaacag gttgttttgg atcacctttt aatgcaaagt
     7681 attcccgaat tttcgttttc ggattggtga acagataaat atctgcacca gctactagcc
     7741 ccttacccca agttacttca gaggcagttg ccggtggtgt agaggctttt ggatcataca
     7801 ccacattcaa acgaccgtta tgctgggtgt tatctgtttc gccaataaaa ccattaaagc
     7861 tattgtagcg atgctccaga cctttttgcg cgagtacttg ttttactgct gcatccttgt
     7921 tagaagacag gaaggtccaa tgggcattac ttgcgccatt cgttggcata tattggtttg
     7981 gattgccttt gagcgtaaag taatcggtac ggttattagc atgtgggttg atatattcat
     8041 aaatatcagc actgttttct ttccacgttc cccattttaa gtccgttgct tcagggggct
     8101 tcgggccatt aatggtgagt gttgcagctt tttgtaggtg attattaaca atacgcgcac
     8161 catcatcact attttgaata cgattaaacg caatgttgtt gccgttgaga tctaaacgac
     8221 caccacggaa gccaaagtaa atcttatttg gatcgacttg atcagcactg tttaatacaa
     8281 cggttgaacg gccgctcaca ataccaactt ggttaaatgc agattttttg ccattttcac
     8341 ccgcttgttg ggtcaaaatg acagtgcctt gtccaacact aatgtcacca aggttttcgc
     8401 ctttaccgtt aatatgtagt gtcccttcgc ccaatttaga taaacggtca ccttgtgggt
     8461 ttttgacttg ccaattaact tgtttacctt ttgccactac aattccagct cctacccagc
     8521 tttgatcatt ttcagggcga actgttgcat tagcattgaa atttaatgcg ccagcacctt
     8581 ggtcaatatc ggtttttaat acgatagtgc tatcttgtcc ttcaatgttt agggtttttc
     8641 cggtgttatc ttgcggaagt tgtagctgag gtgtgccacc atagcctaat ggagaagcgc
     8701 tattgtcttt aattgaacga tcagcaagcg aaaccgttaa gtttttccct ttattaccaa
     8761 tgctactgtc tttaccctgt gcagaccatt caaaaacggc attttgttgc gcattggtta
     8821 atgtgccggc aatatcttcg gcaaattgtt tatcgtgata atcctgacgg ataataccgg
     8881 cacggttgta gtagttgttt gcaggcgtac caaaggtgta agtagccagt agtagccagc
     8941 gtttcgtttt ctgatcgtag ccatacacac ctgaaccgct atcaccacga gtaccaaatg
     9001 cagttaatgc tccatatggg ctattgttta atgcatttcc tctaaaatct agccagtaat
     9061 cggaattatg taccgcgatt ggtaaatgaa ctcccccggt taaatattgg taagatgttg
     9121 aaatttggtt gtctttatgc tcggtatttt tgactatttg acgaccagag cctaagcgag
     9181 caaagtgagt aaaacgacta ctatcttggt aggctgaagc attattaccc agatcagtca
     9241 ctgttgcagg tgcgacctca gtgactaatt tattgagacg tggcacttga taatcttgat
     9301 gttgcccacc ttcaacaatt ccatagtcgt tacgatcaac gactttgtaa gtgtagtggt
     9361 gtgcatcggc attagtgcct ggggcgccaa attccacagt attgtattgt gtattatggg
     9421 caacgctgac taaatattgc ggtgcaacta gagttgctat ccctaagtta cggtttgcag
     9481 cactaaaatc tggcatcggt acatttggga agagtgcatc taatgtattg ccacttttat
     9541 ctttaatttc aatattgctt gcacctacgg tgaatttacc cttattctcc gcaaaatcac
     9601 ggtagtattg aagatcgata tcatctctga aaacagaggc tgttgcagat aaactaacag
     9661 caaatgccac aaagctggca aggtaagaaa gtggaaagtt tttatttatc ataaaatgtt
     9721 aataaattgc taatattaat ggagtaaaaa ggtggggtat tctatagata attatttatt
     9781 tggcaagagg tcttacctgt tttttataca aatttacaat cttaagatag gcaaaagcag
     9841 ctacggaata cgcagctgct ttgttgaaag ttttattgag tgataagcag gagcattatt
     9901 ttgcaaattc ttgcataaat tcgcccgctt gtttgaccat tgaggttgaa ccgacaaaga
     9961 acggtacacg ctggtgtagc tctgttggct taatatctaa aatcggatta ataccatctg
    10021 tcgccattcc tccggcttgt tcggcaagaa acgcaatcgg gttgcattca tagagtaaac
    10081 gcaatttccc ttttggatat acggtggagg ttgggtaaat ataaataccg ccttttaata
    10141 aattgcggtg gaaatcggac accagcgagc cgatatagcg tgaagagtat ggacgtttga
    10201 tggcttcatc ggtttcttgg caatacttaa taaagcgttt cacaccttgt gggaaagtaa
    10261 catactgccc ttcattgatg gagtaatatt ttccttcggt aggggttttt agatcagggt
    10321 gtgaaagaat aaataagcct aatgacggat cataggtaaa accgttcacg ccattgcctg
    10381 tggtgtaaac cagcatggtt gaagaaccat aagtaacata accggcggca acttgtttac
    10441 gcccttcctg caagaaatct tcttgtgtta ctggggtgcc gataggggag acacggcggt
    10501 aaatagagaa gattgttccc acagaaacat tcacttcaat attggaggag ccatcaagcg
    10561 gatcggtcat taaaatatat tttgcatttc tcccacgctc attatcaaag gcaacaaaat
    10621 tatcatcttc ttccgatgca aagccggcaa catcttcacg tgcaagtaac gcttttttca
    10681 tcgtttcgtt ggcgaataca tcaagtttca tttgggcttc accctgtaca ttttcagaac
    10741 ctgcagtacc taaaatatct tgacttaaac cggcacggtt gatttctcga tgaataattt
    10801 tagcggctaa acgaatagaa gataaaatcc cacttaattc cccttttgcc cctgggtatt
    10861 ctgcttgttt ttcaataata aattcgccga gtgttttcat ttttttctcc ttcgctatgt
    10921 tagaatgccc ttattataac gattaccttt aaagaggtag cggtttaagc tttaattctg
    10981 tgatccactt cacattttat ctttcaagat gaggagcaat acgatgaata atctacgaat
    11041 caaaatgatc agccctgaaa tagcattagc aaaatataat gaattggatg ttttagagat
    11101 taatcactcc aaagtgaagg ctaaaattgc attgcaaggt gcgcagttac tgagttggca
    11161 acctaaaaat actcagcaag atgtattatg gttaagtgaa attgaacctt tccaaacagg
    11221 tgtggcgatt cgtggcggca ttccgatttg ccacccttgg tttggtacag acaaaaagcc
    11281 tgctcacggc acagcccgta ttcaagcgtg gaatttgctg gaacatactt cctcagcaga
    11341 tgggattcgt gttgttttgg ggttagaaaa tcaggcaaaa ctcgagatga tactaggcga
    11401 agtctgtgag ttgtatttta ctcacttagc accggagccg gcacaggctg cattgcatac
    11461 ttattttcag gtcggtgata ttacgaaaac ggaagtacaa ggcttagcaa cacaatgttt
    11521 tgataaattg acaaatcaag aaattgaagt gccatcacct cgcaagataa gtgaaaatgt
    11581 ggattgtatt tatccggcac aagcggtgaa ttttattcaa gattttgcaa atcagcgcac
    11641 cattaaagtt gagcatatta atgctaccga aaccgtactt tggaatcctt ggcataatac
    11701 cgttagtgcg atgacagaaa cggcgtatca aaatatggta tgtgtggaaa cagcacggat
    11761 aaatacctta cttcaacaaa atgaaacgct aggagtgaga attttggtgc gataatgttt
    11821 aatgagagca agcagctgaa ttagtaatat tttttacaaa tttaaccgct tgtctcttgt
    11881 atttacacta gatcaaacag taaaaattcc acgtcatctt gagtgtttat ttcaagtgct
    11941 ttctcttgac gaatgcctaa ggcatcgctg gtggaaagtt caacgccatt gatgtttaga
    12001 ttccctttca ccacttgtag ccagtaactg cggtttggct ctaatgccag ttgctctgat
    12061 ttggctgttg ggtattgata acgccacagc ttcatatctt ggtaaatttt aaatgaacct
    12121 tcttctgcgt ttggcgaaag aatcaaggtt gctccctctt tcggggcaaa tctatcttgg
    12181 ttgtagcgag gggtcacatc tttttggttt gggataatcc aaatctggta aaggtgtaag
    12241 gtttcattcg gatctggatt aatttctgaa tggaaaaccc cggttccggc agacataatt
    12301 tgaaattcgc cagcttttac ttcggtttta ttacccatac tgtcttcgtg agccacacgt
    12361 ccttttaaca tataagttaa aatttccata ttatcgtgcg ggtgcttgcc aaaaccgtga
    12421 ttaggtgcaa tgaaatcttc gttaattacc cgtaaatgtg aaaaatggat atgttttagg
    12481 tcgtaataat tggcaaagga aaaagtgtgg tagcttttaa gccagctaaa agaaccatcg
    12541 cctcgttcat tggcttttct cagttgtaac attatctatt ccttatgtaa gtgttaagtt
    12601 gtgccatttt actttatgtc a
//
LOCUS       DANLXB010000068        12565 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLXB010000068 DANLXB010000000
VERSION     DANLXB010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12565
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..683
                     /gene="fkpA"
                     /locus_tag="PXD41_001261"
     CDS             <1..683
                     /gene="fkpA"
                     /locus_tag="PXD41_001261"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6288796.1"
                     /translation="LFSTNVMAEEKADPKFVDDSSYAVGVLMGKNINGVIESQKDIFT
                     YNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKINEEKTKATVAAGDKF
                     RADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGTLTDGTVFDSSYDRGE
                     PIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGKIPANSTLKFEIELLD
                     FKAADAKK"
     gene            780..1436
                     /locus_tag="PXD41_001262"
     CDS             780..1436
                     /locus_tag="PXD41_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6288797.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            1436..1813
                     /gene="tusD"
                     /locus_tag="PXD41_001263"
     CDS             1436..1813
                     /gene="tusD"
                     /locus_tag="PXD41_001263"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL6288798.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            1815..2186
                     /gene="tusC"
                     /locus_tag="PXD41_001264"
     CDS             1815..2186
                     /gene="tusC"
                     /locus_tag="PXD41_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL6288799.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            2196..2471
                     /gene="tusB"
                     /locus_tag="PXD41_001265"
     CDS             2196..2471
                     /gene="tusB"
                     /locus_tag="PXD41_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL6288800.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            2587..3486
                     /locus_tag="PXD41_001266"
     CDS             2587..3486
                     /locus_tag="PXD41_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288801.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            3836..7861
                     /gene="rpoB"
                     /locus_tag="PXD41_001267"
     CDS             3836..7861
                     /gene="rpoB"
                     /locus_tag="PXD41_001267"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL6288802.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            8124..12407
                     /gene="rpoC"
                     /locus_tag="PXD41_001268"
     CDS             8124..12407
                     /gene="rpoC"
                     /locus_tag="PXD41_001268"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL6288803.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         3797 a         2425 c         2895 g         3448 t
ORIGIN      
        1 cactttttag tacaaatgtg atggcagaag aaaaagcaga tcctaaattt gtggatgatt
       61 cctcttatgc cgtgggtgta ttaatgggta aaaatattaa tggtgtgatt gagtcacaaa
      121 aggatatttt tacctataac caggataaaa tcttagccgg tgttcaggac accttaaaga
      181 aaaccggtaa attaaccgat gaagatttgc aaaagcagtt aaaatcgtta gatgcctatt
      241 tatctgcgaa agaagcaaag attaacgaag aaaaaaccaa agcaacggta gctgcaggcg
      301 ataaattccg tgctgattat aaaaaacagt ctggcgtaaa agaaacggct tcaggcctgt
      361 tatataaaat tgaaaaagca ggtgaaggca attcaccaaa agcggaagat actgtgaagg
      421 tgcattacaa aggcactttg actgatggca cggtatttga cagctcttac gaccgtggtg
      481 agccgattga atttcagtta aatcaattaa ttccgggttg gattgaagcg attcctatgt
      541 tgaaaaaagg cggtaagatg gaaattgtag tgccacctgc attagcttat ggtgatcgtg
      601 ccgcaggcaa aattccagca aattcaacct tgaaatttga aattgaatta ttagatttta
      661 aagcagcaga tgctaagaaa taattcgtta ttccttaatt attgaagata cgtaagcggt
      721 tagatttatt ataatatttg caaaaaatgt gataaaacta accgcttgta atttgtatta
      781 tgaccaaaaa atttacgcct ttttctgacg aagatcacgc cattcttgct tcttactttc
      841 cgatggtaga tgggattgcg gcactgattg gtgagcattg cgaaattgta ttgcattcgt
      901 tagagtttct ggaacattcg gcaatttata ttgctaacgg acacaatact aaccgtaaaa
      961 tcggctctcc gattactgac cgtgcattga aatcgctgca tcatatggca acggatagcg
     1021 tctccaaacc ttattttacc aaggcaaaag gtggcgtttt aatgaagtct atcactattg
     1081 cgattcgtaa tggtaaacag cacgttatcg ggttactgtg cattaatatt aatttggaag
     1141 tgcctacctc acagtttctc aattctttta ttgcccctgt agataccgct tcagaagtta
     1201 cttttgccag ttcagtagaa gatttggttt cacaaacgat tcaaacgacc attgatgatg
     1261 tgatggcaga tcgtcaaatt tctaacaata ataaaaatcg tcaaattgtg atttcgttat
     1321 ttgagaaagg gatttttgat attaaagatt ccattaacca agtagcggag aagctggata
     1381 tttcacgcca tactgtgtat ctctatattc gtcaaattaa gcaggacaat gattaatgga
     1441 ttatgtatta gcgataaaat caccggttta tggttcacaa ggggcatttt tagcctacca
     1501 agtggcggaa gaattattaa aagccaatca tacaatttgc caaatattct tttttcaaga
     1561 aggcgtgagc aatgctaatg ccttagtgaa tccagcaagc gatgaagtga atttagtcga
     1621 gatgtggaaa aaattggcta aattgcaccg cttgcctctg catttgtgca ttgctgctgc
     1681 ccagcgtaga ggcgtggtgg atgagcaaat ctcagctaat gcaacacata atttagccga
     1741 aggatttacc ctagccgggt taggcgaatt tagccaagca gtattaaaag cggatcgatt
     1801 actgactttt taagatgaag aaatataaac ttgccttttt atttacccag ccaccttttg
     1861 gttcggcagt tagccgtgag gggctagatg ccttgcttgc agctagtgct ttttgtgacg
     1921 agcaagagat agctatcctc tttatcaatg atggcgtatt taatctcatt gccgatcaac
     1981 agccggaaaa actcttacaa aaagatcata tttccacctt caaattattg gagttgtatg
     2041 acttaactga atgttttatt tgccaagaaa gtgtaagttt acgagggctg gataatgcag
     2101 attggttact gcgaatgctt caatttaaaa ctcacgctga gatgatcgca ttgctcaatc
     2161 aagctgaaaa agtaatgacg ttttaaggaa tatttatgct ttataccctt tccaaagcga
     2221 attatgatga agaaacctta aacttctttt tctcacatct tagtgagaac gatgcggttg
     2281 ttctgtggca agatggcgtg ctacaagcgg tcaaaagtcc gcaatttttt gcaaaattgc
     2341 cccgttgcta tttattggca caagatgtgc aagctcgagg attgcaagag aagctcactg
     2401 catttcagtg catttcatta tccgaattag tcaaattaac agcggtttat tttccccagg
     2461 ttgcactgta acctagagag gatatttttt gtaataccaa ataatttaga ttatgatgtg
     2521 attcctaaaa aggagaatat tatgaaaaca aaatgtctta ttccgctact agcacttaca
     2581 cctgttatgg tgatggcaga agaaaataac acttgggtag acaagaaaca tgaaacagta
     2641 agcactacct tagatcgttg ggcaaacaat attaacagtt ggctaggtga tgcagaccca
     2701 gataaaccgg gaacggcttc tttacgggta atgttagata gccgttggga taaacacgat
     2761 aaatttactt ataagccccg tgttcgtggt aaaatcaaac tccctatctt gaaaaagcat
     2821 ctaaatgtcg tatttggtga tgacgaactg gataatgagc ttaccgataa aaatcatgct
     2881 ggaaaattgt ataaaaacgt caatccaaat aaacgctata actctcgtga agcgagagat
     2941 tcgaactctt ctatcggttt acgttggtct gatggcatta aggctttagg gattgagacc
     3001 gatttagatg ctggtattcg ttcgggaagc gatattttcg ggcgtttacg catcagtaaa
     3061 gattggaaaa tcaccgacca gttcagtacc cgcctagagc aaatttatcg ttacggttca
     3121 gagagcaagc actatttacg tactaacttt gaaaataaat ataccgaaac ggataccacc
     3181 tttattatga accacaccaa ttttgaatat cgtcatgatg tagatgaaga aagaagttgg
     3241 gggaatagtt tatatcgtca acataacttc aaaccactca cgcacatcag ctatggtatc
     3301 agtatggggg ggcgtttaga taaagagtta tcaaaattta actattgggg tccatttgtc
     3361 tcctatcgtc aaccaatctg gcgcaactgg ctctttatcc agcctgaaat cagtttttat
     3421 aacgacaaag ataaagatcg taagcacttt attcagacat ttgtacgttt agaggctatc
     3481 ttctagctat taagcctcaa gtagaatctt ggggcttgtt tttgcaagcg gtcaatttct
     3541 tgccaaaatt tacaaaatcc gctataattc ctaaccattt ttagcaaaaa ttggctgacg
     3601 gcttgaccgg tcagcctttt gtgcttgaac gcaagggctg attttgtcat tttaatcagc
     3661 aaaatttgca aatttcctgc ccaatttgac cgcttgcagt agcgatttct gactgcttga
     3721 ttggcgattg gaaaatgaca tctcgtacag tttttataat gccacttcca accgagtctt
     3781 tcgtgtcgga ttgtgtaatc tcaaccaaaa tatatttcag aggctatctt aaaaaatggc
     3841 atattcatat tccgagaaaa agcgtatccg taagagcttt ggcaaacgcc cacaagttct
     3901 gaacgtacct tatctattaa caattcagct tgattctttt gaaaaattta tcgaaaaaga
     3961 tcctgaaggg cagcaaggtt tagaagcggc attccgttct gttttcccga ttgtgagcaa
     4021 caatggtgca acagaattac aatacgtttc ttacgaatta ggcgagccgg tgtttgacgt
     4081 gcgtgagtgc caaattcgtg gtacaaccta cgctgcacca ttacgcgtga aattgcgttt
     4141 agtctcttac gatcgtgaag ccgcagccgg tacggtaaaa gacattaaag agcaaaacgt
     4201 gtatatgggc gaaatcccat taatgaccga taacggtact ttcgtgatta acggcaccga
     4261 gcgtgttatc gtttctcaat tacaccgtag cccaggtgtg ttcttcgatt ctgacaaagg
     4321 taaaacccac tcttcgggta aagtgcttta taacgcacgc attatccctt accgtggttc
     4381 ttggttagat ttcgagtttg atccgaaaga taacttattt gcccgtatcg accgccgtcg
     4441 taaattgccg gcaaccatta ttctacgtgc attaggctac accaccgaag aaatcttaaa
     4501 tttattcttc gagaaaatta aatttgaaat tgccgataat aaattattga tgacgttagt
     4561 gcctgagcgt ttaagaggcg agactgcatc atttgatatt gcagcaaacg gcaaagtata
     4621 tgttgaaatg ggtcgccgta ttaccgctcg tcatatccgt gcgttagaaa aagacaatgt
     4681 gacccaaatt gaagtgccgg tggaatatat tgtcggcaaa gtagcggctc aagattacgt
     4741 tgatttatct tcaggtgaag tgatttgccc ggcgaatatg gaaatctcga tggagatgtt
     4801 ggcgaattta tcacaagccg gttacaacca gatcgaagta ttatttacca acgatttaga
     4861 ccacggtcca tatatttctg aaaccttacg tgttgatcca acttacgacc gtttaagtgc
     4921 gttggttgaa atctatcgta tgatgcgtcc gggcgaacca ccaacgaaag aagcggcaga
     4981 agcattattc gataatatgt tcttctcggc agagcgttat gatttatcgg cagtaggtcg
     5041 tatgaaattc aatcgctcgt tagaaattcc ggaaggcgta ggcagcggta ttttaagcaa
     5101 cgatgacatc atcggtgtga tgaaaaaatt aatcgaaatc cgtaacggtc gtggtgaagt
     5161 ggatgatatc gaccacttag gtaaccgtcg tatccgcagc gttggtgaaa tggcagaaaa
     5221 ccaattccgc attggtttgg tgcgtgtaga acgtgcggtg cgtgagcgtt tatctttagg
     5281 cgatttagat ggtgtaacac cacaagattt aatcaacgct aaaccgattt cagcagcagt
     5341 gaaagagttc tttggttcat cacaactttc gcaatttatg gaccaaaaca acccgctttc
     5401 agaggtaaca cataaacgcc gtatctcggc attaggcccg ggtggtttaa cccgtgagcg
     5461 tgccggcttt gaagtgcgtg acgtacaccc gactcactat ggtcgtttat gtccaatcga
     5521 aactcctgaa ggcccgaata tcggtttgat caactcacta tcggtgtatg ctcgtactaa
     5581 taactacggt ttcttagaga ctccattccg taaagtggtg aatggtcaag taaccgaaga
     5641 gatcgagtat ttatctgcga ttgaagaaag caacaatatc attgcacagg cgaactcaaa
     5701 cttagatgag aacttccgtt ttaccgatac ttatgtaact tgccgtcagc aaggcgaatc
     5761 gggcttattc aaaccggaag aagttcaata tatggacatc tcaacccaac aagtggtttc
     5821 tgtggctgcg gcgttaattc cgttccttga gcacgacgat gcgaaccgtg cgttaatggg
     5881 tgcgaacatg caacgtcagg cagttccaac cttgcgtgcg gacaaaccat tagtcggtac
     5941 cggtatggaa aaaccaattg ctcttgactc aggtgtagcg attgtcgcaa aacgtggtgg
     6001 tacggtgcag tatgttgatg cgtcacgcat tgtagtgaaa gtaaatgaag atgaaaccat
     6061 tccgggcgaa gcgggtatcg atatttataa cttaatcaaa tacacccgtt caaaccaaaa
     6121 cacctgtatc aaccaagtac cttgtgtgaa cttgggtgag ccggttgctc gtggtgaaat
     6181 cttagcggac ggtccttcaa cagacttagg tgaattggca ttaggtcaaa atatccgtgt
     6241 ggcatttatg ccttggaacg gttataactt cgaagactca atgttagttt ctgagcgtgt
     6301 ggtacaagaa gatcgcttta ccactatcca cattcaagaa ttatcttgtg tggcgcgtga
     6361 taccaaatta ggtgcagaag agatcaccgc tgatattcca aacgtgggtg aatctgcatt
     6421 aagcaaatta gatgaatcag gtatcgttta catcggtgca gaagtgaaag gtggcgacat
     6481 cttagtaggt aaagtaactc ctaaaggtga aacccaatta acaccggaag aaaaactatt
     6541 gcgtgcgatc ttcggtgaaa aagcctctga tgtgaaagat tcatcattgc gtgttccaaa
     6601 cggtacttca ggtacggtta tcgatgttca agtatttacc cgtgatggcg tagagaaaga
     6661 taaacgtgcg aaagaaatcg aagagatgca actgtgtgaa gcgaagaaag acttagcgga
     6721 agagttggaa atcttagaag ccggtttatt tactcgtgtt cgcaacctat taattgaagg
     6781 cggcgtaaaa gaatctgcat tagatggcgt tgctcgtgaa aaatggttag aacaaaccct
     6841 tgaagacgaa gcgaagcaaa atcagttaga acagttagcg gaacagcacg aagagttacg
     6901 caaagaattt gaacgtaaac ttgagatcaa acgcaacaaa attatccaag gcgacgattt
     6961 agcaccgggt gtgttaaaag tagtgaaagt ttaccttgcg gtgaaacgcc aaatccagcc
     7021 gggtgataag atggcgggtc gtcacggtaa caaaggggtt atctcgaaaa tcaaccctgt
     7081 ggaagatatg ccatacgatg aaaacggtca gccggttgaa atcgtattga acccgctggg
     7141 cgtaccgtct cgtatgaaca tcggtcagat cttagaaacc cacttaggct tagcggctca
     7201 tggtatcggt gatcagattg ataagatgat caaacagcaa caagaagtgg ctaaattacg
     7261 tgaatatatg caaaaagcct acgatttagg tcacggctca caagtcgttg atttaagcac
     7321 tttctctgat gaagaagtga tgcgtttagc gcaaaactta cgcaaaggct taccgcttgc
     7381 tactccggta ttcgatggtg cacacgaaag cgaaatcaaa ggcttattag agttaggcgg
     7441 cttaccgact tcaggtcaga tcacacttta tgatggtcgt accggtgaga aatttgagcg
     7501 tccggtaacc gttggttata tgtatatgct caaattgaac cacttggttg atgataaaat
     7561 gcacgctcgt tcaaccggtt cttatagcct tgttactcaa caaccattgg gtggtaaagc
     7621 tcaattcggt ggtcagcgtt tcggtgagat ggaggtttgg gcattagaag catacggtgc
     7681 ggcttatact cttcaagaaa tgcttacggt gaaatcggac gatgtgaacg gtcgtacgaa
     7741 gatgtataaa aacattgtag atggtacaca ttatatggag ccgggtatcc ctgaatcctt
     7801 taacgtaatt accaaagaga tccgtgcatt agcaattgat atggagctgg acgaagcgta
     7861 atggtttcac tctccccctt gatgggggag agacaggcaa aggatttgtt cagaatcctt
     7921 tggcagagag agggtgatgc aagcggtgta aatttgctaa atttttgcaa aaatcgaccg
     7981 cttaccctct ccctgatttt gcttctgaac gaggcaaaat ctatccctct cccacaaggg
     8041 gagagggttt aaaatcgcaa ccaaattcgt agagtggata ttctttccac caaacaaaac
     8101 aacctcaaac taggggcaaa aaagtgaaag acttagtgaa gtttttaaaa gcacaaacaa
     8161 aatcgaacga agattttgat gtgattaaaa ttggtttagc atcaccggac aagatccgtt
     8221 cttggtcttt tggtgaagtg aaaaaaccgg aaaccattaa ctatcgtacc ttcaaaccgg
     8281 agcgtgatgg tttattctgt gcacgtattt tcgggccggt aaaagattac gagtgcttgt
     8341 gtgggaaata caaacgttta aaacaccgtg gcgtaatttg tgaaaaatgt ggtgttgaag
     8401 taacccaaac taaagtacgt cgtgagcgta tggggcacat tgaattagct tgccctgtcg
     8461 cacacatctg gttcttaaaa tcactaccgt cccgtatcgg tttaatctta gatatgccgt
     8521 tgcgtgatat tgaacgtgtg ctttattttg aatcttatgt agttactgaa ccgggaatga
     8581 ccgatttaga gaaaaatcag ttattaaccg aagaacaatt tatggacgct gaagagcgtt
     8641 ggggtgatga atttgaagcg aaaatgggtg cagaaggtat ccaagcatta cttcgtgatt
     8701 tagatttaga acaccaatgc gaaaccttgc gtgaagagtt acaagaaacc aattcagaaa
     8761 ccaagcgtaa aaaaatcact aagcgtttaa aaaccttaga agcattctta caatccggca
     8821 acaaaccgga atggatggtg atgacagtat taccggtact tccaccggat ttacgtccgt
     8881 tagtaccgct tgacggtgga cgttttgcga cttctgactt aaacgattta taccgccgtg
     8941 taattaaccg taacaaccgt ttaaaacgct tgttagattt agttgcaccg gacatcatcg
     9001 tgcgtaacga aaaacgtatg ttacaagagt cggttgatgc gttattagac aacggtcgcc
     9061 gtggtcgtgc gattaccggt tcgaacaaac gtccgttaaa atctttggca gatatgatca
     9121 aaggtaaaca aggtcgtttc cgtcaaaact tattaggtaa acgtgtagat tactcaggtc
     9181 gttcggtaat taccgtaggc ccatacttac gcttacacca atgtggttta ccgaagaaaa
     9241 tggcgttgga attattccgt ccgtttatct actcaaaatt agaaaaccgt ggcattgctt
     9301 caactattaa agccgcgaag aaaatggtag agcgtgaaga tcctatcgta tgggatattc
     9361 ttgccgaagt gattcgtgaa cacccgattc tacttaaccg tgcaccaaca cttcaccgtt
     9421 taggtatcca agcgtttgag ccgttattga ttgaaggtaa agcgatccag ttacacccac
     9481 tcgtgtgtgc ggcgttcaat gcggacttcg acggtgacca aatggcggtt cacgttccat
     9541 taacccttga agcacagtta gaagctcgtg cgttaatgat gtcaaccaac aacgtacttt
     9601 caccggcaag tggtgatccg attatcgtac cgtctcagga cgttgtactc ggtctttact
     9661 atatgacccg tgagaaagta aacggtaaag gtgagggaat gtacttcctt gaccctcgtg
     9721 aagcggaaaa agcataccgt accggtcagg ctgaattaca ttctcgtgtt aaagtgcgtg
     9781 ttactgaata tgagaaaaac gaagcaggcg aattagaagc aaaaacttcg ttagtagata
     9841 ccaccattgg tcgttcaatc ttatggatga ttgcaccaaa aggtatgccg tttagcttgt
     9901 tcaaccaaac cttaggcaaa aaagcgatct cgaaattaat taacgagagc tatcgccgtt
     9961 taggtttaaa agaatctgtg gttttagctg accaaattat gtacaccggc tttgcttatg
    10021 ctgctcgttc tggtgcctca gtaggtatcg acgatatggt aattccggag caaaaatacg
    10081 caatcattga agcggctgaa gcggaagtcg ctgagatcca agagcaattc aacggcggtt
    10141 tagtaacagc cggtgagcgt tataacaaag tgatcgatat ttgggctgct gcaaacgaac
    10201 gtgttgcgaa agcaatgatg gaaaaccttt caacggaaga agtaatcaac cgtgaaggta
    10261 atccggaaaa acaagcctca tttaacagta tctttatgat ggcggactcc ggtgctcgtg
    10321 gttctgctgc acagattcgt cagttagcgg gtatgcgtgg cttgatggct cgtccggacg
    10381 gttcgattat cgaaacccca attactgcaa acttccgtga aggtttgaac gtattacagt
    10441 actttatttc aacccacggt gcacgtaaag gtcttgccga tacggcatta aaaacagcga
    10501 actccggtta cttaacccgt cgtttagttg atgtggcaca agatttagtt atcattgaag
    10561 atgactgtgg tacgcacgaa ggtatcgtga tgacaccact tatcgaaggt ggtgatgtga
    10621 aagaagccct gcgtgatcgt gtattaggtc gtgtggtggc agaagatgtg ttaaaaccgg
    10681 gtacagatga agtattaatt ccacgcaaca ccttattaga tgaaaaatgg tgtgatgtgg
    10741 tggatcgtga atctgtggat gtgatcaaag tacgttcggt agtaacttgt gatacagact
    10801 tcggtgtgtg tgctaaatgt tacggacgtg acttggctcg tggtcactta atcaaccaag
    10861 gtgaagcggt cggtgttatt gcggcacaat ctatcggtga gccgggtaca cagttaacga
    10921 tgcgtacgtt ccatatcggt ggtgcggctt ctgcggcagc aaaagaatct agcatccaag
    10981 tgaaaaacgc aggtacgatt aaattaacca acgctaaatt tgtaaccaac aaagaaggca
    11041 aaatcgtatt aacttctcgt aatactgaat taactgtcat cgacaccttc ggtcgtacca
    11101 aagaaaacta taaagtgcct tatggtgcgg tgctttctaa acacgacggt gcagaagtgg
    11161 ctgtgggtga agtggttgcg aactgggatc cgcacacaat gccggtaatc tcagaggtat
    11221 caggtcgtat ccaatttagc gacatcgtag atggcttaac cgttactcgc caaaccgatg
    11281 aattaaccgg tttatcatct atcgtggtgc aagatgtggg tgaacgtgca accgcaggta
    11341 aagatttacg tccggcatta cgcttagttg atagcaacgg caaagacatc ttaattccgg
    11401 gtacagacgt tgcagcacaa tacttcttac cgggtaaagc aatcgtaacc ttagacgatg
    11461 gtgcagaaat tgaagtcggt gaagccttag cccgtattcc acaagaatct gtggggacga
    11521 aagatattac cggtggtctt ccacgcgtag cagacttatt cgaagcccgt aaaccgaaag
    11581 agccggcaat cttggcggaa atttcaggta ttgtgtcgtt cggtaaagaa accaaaggta
    11641 aacgccgctt ggtaattact ccggcggaag gcgaagcgtt tgaagagatg attccaaaat
    11701 ggcgtcagct caacgtattt gaaggcgaga tggtacaacg tggtgatgtg atatcagacg
    11761 gtgcagaaac tccgcacgac atcttacgct tacgtggcgt tcacgccgtt accgactaca
    11821 tcgtaaacga agtgcaagaa gtttaccgct tacaaggggt aaaaattaac gacaagcaca
    11881 tcgaagtgat tgttcgccaa atgttgcgta aagctgtgat caccaacgct tacgactctg
    11941 aattcttaga gggcgaacaa gtggaagtgg ctcgtgtgaa aattgccaac cgcaaacgtg
    12001 ctgaagaagg caaaccgttg gtagaatttg aacgtgaatt gcttggtatt accaaagcat
    12061 ctcttgcaac agaaagcttt atttctgcag cctcgttcca agaaaccact cgagtgctta
    12121 ccgaagccgc agtggcaggt aaacaagatg aattgcgtgg cttaaaagag aacgtaatcg
    12181 ttggtcgctt aatcccggca ggtaccggtt ttgcttacca ccaagcacga gctaaaaaac
    12241 gtgcccaact ggaagcagga attgcagttg tccctgaatt tgaagcaccg gcagctaaag
    12301 ccaattcatt cgttaccgat gcagacatcg aagctgaatt tgaatttgtt gcagacgatg
    12361 caacccaaag tttagcagcg ttgttaaatg cgggtgagga agagtaatag ctcgtagggt
    12421 atgataaatt aaaaaatctc ctagaatata atttctagga ggttttctac ttgaatataa
    12481 gggaaaaata tatagaatgt aagggcttat tcaatttgtg gataaggtaa tcaacagtat
    12541 gtcaatagtt gataacattt cataa
//
LOCUS       DANLXB010000069        12376 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLXB010000069 DANLXB010000000
VERSION     DANLXB010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12376
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(196..378)
                     /locus_tag="PXD41_001269"
     CDS             complement(196..378)
                     /locus_tag="PXD41_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288804.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            528..1568
                     /gene="selD"
                     /locus_tag="PXD41_001270"
     CDS             528..1568
                     /gene="selD"
                     /locus_tag="PXD41_001270"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:573..575,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL6288805.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1568..2041
                     /locus_tag="PXD41_001271"
     CDS             1568..2041
                     /locus_tag="PXD41_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL6288806.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2031..3239
                     /gene="ubiH"
                     /locus_tag="PXD41_001272"
                     /gene_synonym="visB"
     CDS             2031..3239
                     /gene="ubiH"
                     /locus_tag="PXD41_001272"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL6288807.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3502..4734
                     /locus_tag="PXD41_001273"
     CDS             3502..4734
                     /locus_tag="PXD41_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL6288808.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4801..5787
                     /locus_tag="PXD41_001274"
     CDS             4801..5787
                     /locus_tag="PXD41_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6288809.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5828..6238)
                     /locus_tag="PXD41_001275"
     CDS             complement(5828..6238)
                     /locus_tag="PXD41_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL6288810.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXD41_001276"
     CDS             complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXD41_001276"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL6288811.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXD41_001277"
     CDS             complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXD41_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL6288812.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXD41_001278"
     CDS             complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXD41_001278"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL6288813.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10139..10870)
                     /locus_tag="PXD41_001279"
     CDS             complement(10139..10870)
                     /locus_tag="PXD41_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL6288814.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXD41_001280"
     CDS             complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXD41_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL6288815.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXD41_001281"
     CDS             complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXD41_001281"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL6288816.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
BASE COUNT         3453 a         2521 c         2764 g         3638 t
ORIGIN      
        1 gactgtcaga tcaagtctga tcttctacaa ctaagccttc tcagaataaa taaattttca
       61 caagcggtgc aactttgcaa aaacttcggt attatgtagc agttgcacaa aaccccaaat
      121 tcattaaaac cgcttaaaaa tgaaatgccc taaactgatt tttcagtcta gggcatttat
      181 tatcacatat tatggttaat agggaaaact cacatcattg ttatgctggt gatatttttg
      241 ccaaaatgcg tgatattgtt ttttcaccga tgtgtttaat aaaaacggga ttatcaagac
      301 ataggtcggg caattccata gcattgcacg ttgtgtatcc gtgccgattt tggtgcgtaa
      361 gtaaccaaac tgatacatta gacccaatcc aaccgtcacc tattctaata gcataataac
      421 taaggtcgca tcattaaatt aaaagctcat tttttgcaaa aaatttccca aattccaccg
      481 cttgttggcg tacaataggc ataattttga tttacgatgg aggcagaatg tctgaaccga
      541 taaaacttac gcagttcagc cacggggcgg gttgaggctg taaaatttcg cctaaggtgt
      601 tagggacaat tttacaaact caattagaac aatttgtcga tccgaattta ttggtaggca
      661 atgaaacggc ggacgatgct gccgtctatg atttagggaa cgggcaggcc attatcagca
      721 ccaccgattt ctttatgccg attgtggacg ccccgtttga tttcgggcga attgctgctg
      781 ccaatgcgat tagcgatatt tatgcgatgg gtggcaagcc gattatggcg attgcgattc
      841 tgggctttcc ggtgaataaa ttgccggctg aagtggctca acaaattgtc gaaggtgggc
      901 gttttgcgtg ccagcaagcc ggtattgcct tggcgggcgg gcattcgatt gattcgcccg
      961 atccgatttt cggcttggct gttaccggca ttgtgccgac cgaacgggtg aaacgcaatg
     1021 cctctgcggt ggctgggtgt gagctgtttt taaccaagcc tttggggatt ggcattctaa
     1081 ccacggcaga gaaaaaaggt ttgttgaagc ctgaacatca acatctggca agcgaggtaa
     1141 tgtgccaaat caacttgatt ggttcagcgt tttccgaact gcctgaagtc acggcaatga
     1201 ctgatgtaac cggttttggc ttactcgggc atttaagcga ggtgtgtcaa ggctcgggct
     1261 tacgggcgga ggttgatttt gaggatattc aagtccttga tggcactaag gagtatattg
     1321 cattgggagc agttccgggt gggacaaatc gcaatttcga cagctatggg catttgattt
     1381 cggcaatgac ggacgagcaa aaagcgattt tgtgcgatcc gcaaacctct ggcggtttat
     1441 tagtggcggt gctgccacaa gcggtcgaaa aagtgcaaca aattgcaaat cgggcaaatg
     1501 tgccgttatt ccacgttggc agattgctgg aaatggaaca gggcaaacca cggattgagg
     1561 taatttgatg tttaaaccaa atgtaacaat ggcttgcgtg gtgcattgta agggaaagtt
     1621 tctgtttgtg gaagaaattg aatatggcaa acgtaccctt aaccagccgg cagggcattt
     1681 agaaaaagat gaaaccttgc tggagggggc aagccgtgag ctgtttgagg aaaccggtat
     1741 tcgggcagaa atggcaaatt tggtgaaaat ttatcaatgg caagcccctc gttcacaaac
     1801 cgatttcttg cgttttctgt tttcggtgga actggaagag tggctggagc cgaatccgca
     1861 agatgcggat attacccaag ccctttggct tactttagca gaatttgaag actacattca
     1921 gcaacaaggg caatgtgcca gaagcccgtt ggtggttcaa tcggtcaaag attatttaag
     1981 cggtgagcgt tatccattaa gtttgttgaa tgcgtttgaa tgggcgagaa atggaaaata
     2041 aaacaacaac ccaatttgat gtggtgattg tgggcggggc agtgaccggc tcggtgctgg
     2101 cattggcgtt aagtagtttt actcatcaca aaatctcgat tgcgatagtg gaaaaatcgc
     2161 tgccggacta tgaacagcaa ggcggttttg atgctcgcag tattgcctta gccgaaggca
     2221 gtttgcaaaa aatggggcaa atcagaccgc ttgcaggctc aagtttaggc gagatgatta
     2281 gcgaaatcgg cacgccgatt cagcaaattc aagtagcgga taaagggcat tttggtaaaa
     2341 cgaccttgaa agcaagcgag cagaatgtgg ctcaactggg tatggtggtg gaacttgcaa
     2401 aattcggcag aaaattgacc gcttgtcttg cacagcaagc taatattacg cttttttgcc
     2461 cgaatcaagt ggttggcatt gagcgttccc aacaacattg tggattgagc ttgaaaaatg
     2521 gtgagaaact aagctgttcc ttgctggtgg cggcagatgg tattcaatct cagattgcaa
     2581 aacagtgcgg tgtggaaacc gtaaaagtaa gggattatgc acaatcggca attatcgcca
     2641 atgtggaact gagtgaatct caccaaaatc aagcctttga atattttacg cctcaaggcc
     2701 cttttgcttt attgcctttg agcggaaata tgatgtcgtt ggtgtggtgt gtgaaagagc
     2761 cgaacgagtt aatccaactt tcagacagtg aatttttagc ccgtttgcaa caacaatttg
     2821 gttggaagtt agggcaattt gttcgagtga gcaagcggtt tgtttatccg ctcattttgc
     2881 aaaaagccca gtcgcatatt caccaccgct tagcagttgt cggcaatgcc gcacaaatgc
     2941 ttcacccggt tgctgggcaa ggtttcaact taggcttgcg tgatttgact accttagcgg
     3001 aattagtggc tttggcgttt aatcaaggga aagatatagg cgaattttcg ctcttatcaa
     3061 cttttgagaa tgagagaacg caagatcaag ccagaatgat aaatgctaca agcggtctga
     3121 tttcgctttt ttgttgcgaa atgttaccag ttcaggttgt gaggaattta gggttattaa
     3181 cggtttccca ttcaaaaata gccagagatt ttgttgctaa tcaggcatta ggttggtaaa
     3241 aaacacaaaa gcagcaattt tctatttgac actgttttta aaaaggcgta ttatccaacc
     3301 cgtttaaaaa tctcaccaaa gccttgaatg caaattcaag gctttttcct ttttagtgaa
     3361 agcctatgaa ttttgtttgc cgtaaaatcg gcaaaaaaat tttgcctaaa attcgcaatc
     3421 gtttgcgaaa taggtttata gcgttgtttt catctgggta actgcaatgg ttacatcgca
     3481 atacatcaaa gagagtaaaa aatgaccaca gaaaatatga gtacgccaaa gcaggcgttt
     3541 atcgggctgc aaatgctgtt tgttgcattt ggggcgttag tattagttcc gctgattacc
     3601 ggtttagatc ctaatgttgc ccttcttacc gccggtgtcg gtacgttaat cttccaaatt
     3661 tgtactaaac gtcaagttcc tgttttcctc gcatcgagtt tcgcttttat cgctccaatc
     3721 caattcggtg ttcaacaatg gggaattccc gtcacaatgg gagcattgct ctgttccggt
     3781 tttatttata tggcattatc tgctttagtg aaagcgaaag gggtgaatat tctgcataaa
     3841 tacttccctc caatcgtgat tggaccggta attatggtga ttggtttagg tcttgctcct
     3901 gttgcggtgg atatggcaac gggtaaatcg gcgaatattg cctataacac cgctattatt
     3961 gtttcaatga taacgctggt aactacgctg attgtggcgg tgtttgcgaa agggctatta
     4021 aagctcgtgc caatattagc aggtttaacg gtgggatata tcttgtctgt ttttatggga
     4081 ttggtggatt ttactaaagt ggttgaagct ccttggttta gtctaccgaa agtttccgca
     4141 ccggaattca aattagatgc aatcttgtat ttattaccta tcgcacttgc tccggcagtc
     4201 gaacacttag gcgatgtaat ggcaatcagc caagttgccg gtaaagattt tatgaaaaaa
     4261 ccggggttac accgcacgct tttaggtgat ggtttagcaa cttcagcagc tgcggcatta
     4321 ggtggcccac caaatacgac ttactctgaa gtaaccggtg cggtaatgct aaccaaaaac
     4381 ttcaatccga aaattatgac ttgggctgcg tgctgggcta tcgctttctc attctgcgga
     4441 aaaatcgggg cattccttgc cactatccct acttttgtga tgggcggtat tatgatgttg
     4501 ctgttcggtg cagttgcggt tgtggggatc aatactctaa ttaaagctaa agttgattta
     4561 agcattccac gtaatctttg tattgcttct gtagtaatga cattcggtat tggcggtatg
     4621 ttaattaaca tcggcgaatt ctcattaaaa gggatcagct tgtgtgcatt agtcgctatt
     4681 gtacttaaca ttgtattacc aaaagaaaaa gtagaagatt ctgctgctca ttaatcaaag
     4741 gacgctgtgg cgtccttttt gctaataacc ctctatttgt aaataaaaag gaataacact
     4801 atgcaaaaac tcacattttc accaccactt ttaaatacgc cttgcccttg gtgttcggag
     4861 ttagagagct tgcgtgaact ttatgcgtgt gaatataccg gtgcggtaac aacccgtact
     4921 tcaatgcctc aaccatatcc acacgattgg gcgaagaacc aatatgtact ctttgattcc
     4981 aacgcacaga aaacagcaag tgtgaatact caagatgcaa ctagcttaca aacagcaagc
     5041 cttaacacca tcggtttaag cccaaataat ctggatacca ccatcagctt tgtacgcacc
     5101 atttcaaatg agctgacagc gccatcaagc aaaccattta ttatttcggt gtttggttca
     5161 cccgaagagg tgggggaatg ttatgaaaaa attgttgctt tccaaactga agtgaaaatg
     5221 cctttggcaa tggagattaa tatctcttgc ccgaatattc cgggtgaaat ttcgcctgct
     5281 tattccgcag aagaattatc acattacttg cacgcactac aaacttcgct aaaaaaactg
     5341 gctcaaggtg ataatacttt accaatcggg attaaaattc caccttttac ttaccaaaat
     5401 caatatgatg aattaatcaa aggcttatta caagcggtcg aaaatggcga aaatttacca
     5461 atttccttta ttacttcaac caatacgctt ggctcatcgc ttgtcttaaa tgctggcaaa
     5521 gcggtattaa attcagaagt gggaacgggc gtaggcggaa tggcaggaac ggcaatccat
     5581 gcactttctt tggggaatgt ttacacgatt cgccaaatgt tagatcaaga gcctaagctc
     5641 aaacatcttc aaattattgg tgtgggcggc gtgaatgata aagccggctt tgagcgaatg
     5701 aaatcggttg gggcagactt tgtggggtta gctaccgcat taggggtgaa aggaatcggc
     5761 gtttttaaag agattctgtc tgaataatga agaggagggc gtgcattgca cgcccgaata
     5821 aatgaaatta gcctaaccat ttctccacta attcattagt ggtttcttta tgtacccaca
     5881 tactgccaag ttccggcatt gggaatttgg tgtggttgta gccgacaaat tggcggaaat
     5941 caaacacggc gtgcgggtag ccgttgatca gtaaaaaggc ttgatagccg tcttcactcc
     6001 agcaaatttc taaacggcga ggttctttta atgaattttg ctcaatatcg ctgacccgaa
     6061 acacaaataa actatccact accggctgtt cggtttggtg taagtccatt gcataaaagt
     6121 agccgctttc ttcatcaatt tcaaacatca ctactaaatg ttcgtgctgg gttgaatgag
     6181 cgccattacg gtaaggttcg ttcagtagaa tatgagcagt taaaacagag tagagcatta
     6241 aattatcctt ataagtaaaa tgccaccgat ttctcagtgg catttaaata tttaatcagg
     6301 caattacgct tgacctttaa tctctttacg gccgttgaac ggagccggtg taccagcacg
     6361 ctctaacgct tcttcgatac ggattaactg gttgtatttc gctacacggt ctgaacggct
     6421 cattgaaccg gttttgattt gacctgctgc tgtacctact gctaaatctg caatggttgc
     6481 atcttcagtt tcgcctgaac ggtgagagat aactgcggtg taacctgcat ctttcgccat
     6541 tttgattgca gctaaagttt cagttaaaga accgatttgg ttgaatttga ttaagattga
     6601 gtttgcgata cctttctcaa taccgttttt caagattttg gtattggtta cgaataagtc
     6661 atcaccaact aattgtactt tgtcgcctaa tactttagtt tggtatgcga aaccttccca
     6721 gtcagattcg tcttgaccat cttcgataga cacgattggg tactctttgc ataagccttc
     6781 taagtagtga gtgaactctt gtgaagtaaa ggttttgcct tcgcctttca tatcgtacac
     6841 attgcgttct ttgtcgtaga attcagatga tgcacagtcc atcgctaaag ttacgtcttt
     6901 acctaacaca tagcctgctt tttctaccgc ttctttaatg cacgctaatg cgtctgcgtt
     6961 tgaagccaag tttggtgcga aaccaccttc gtcacctaca gcagtattta agcctttcgc
     7021 ttttaatact tttgcaagat tgtggaatac ttcagcaccg atacgaagag cttcttttaa
     7081 tgtagaagca cctaccggtt gaatcataaa ttcttgaatg tccacgttgt tgtcagcgtg
     7141 ttcaccacca ttgatgatgt tcatcattgg taatggcatt gagtaaacac ccggtgtgcc
     7201 gtttaattca gcaatgtatg cgtaaagcgg taagcctttt gaagcggctg ctgcttttgc
     7261 tgttgctaaa gaaaccgcta agatagcgtt tgcaccgaat tttgatttgt tttctgtgcc
     7321 atctaaatcg atcataattt ggtcgatttc agcttgtgca gaaccgtctt tgcctactaa
     7381 tgcgtttgca atttcgttat ttacggcaga aaccgctttt aatacacctt tacctaagaa
     7441 acgacctttg tcgccatcac gtaattctaa tgcttcacgt gaaccggtag aagcacctga
     7501 tggagcggct gctaagccta caaaaccacc ttctaagtga acttctgctt ctacagttgg
     7561 gttaccacga gagtcgatga tttcacgacc gattacttta acaattttag ccattgttga
     7621 tgtcctctaa tatacgagtt aatagaaaaa agaataggta tatagtaaag cgattttctg
     7681 cttttgtctt ggaaaaactg attgagtggc agaaaatttg ccactaattt gatctaagac
     7741 tatattcgcc tgagattata gcaacctttg caaaaaacgg caaaaatttg cccgcttgta
     7801 atgcttattt tttgactaaa aaagtcaagg tttcataatg tgctgtgtga gcaaacatat
     7861 caaacagctg cactttgtgt agttcgtaat ttgtcaaaaa tgtaaaatcg ttcgccattg
     7921 agacggcatt acaactggag taaatcaaat aaggtgagcc taattgattt aaaaattctg
     7981 ctaatagttt gccgatacca cgtcgaggtg ggttcacaat cactaaatcg ggtggagaac
     8041 cagcttcatt taaagcaaat tgtgcagaat ctaatgaggc aaattttacc tgctttaggc
     8101 cgagtttttc agccgatttg gtcgcacttg caatagctga ggctgaaatc tcaatgcctg
     8161 tcagctccac gttcgagttc ttcgcttgca aggcgttggc acaatgtaag ccgaaaccac
     8221 cgacaccgca gaacaagtcc cacaatttag caataggtaa atgctcaatc cagctttgtg
     8281 ctgtgtggta aagctggctt gctaccacag ggttagtttg gaaaaagccc tgagggcgaa
     8341 taaatagcgg tatgccgtta aaatgttctt ccagcacttt ttgttcggtg aggaaaatct
     8401 cagtttcgcc ttctaaaaga gcagcgtgtt ggggctgaat attcagacta actactgagt
     8461 tgggtggcag tttttccaac agttcgggca attcccgttc aaccaatgca cgctttgctt
     8521 cactacgaac cacaaaacgg agcataaatg attgattata ttggctttcg gtaatcagaa
     8581 tatattttag ctcacctttt ttcttactga tgttatacgg cactaaacca gctcgagcga
     8641 taaaatcttt caaaatcgga aaaagtctat gaaatgagga cgggtagagc agacagtcgg
     8701 ttaaatccac cccgctttga gcatcatttt gatcttttaa aatgcctaaa atcgggcgtt
     8761 ctacactgcc ggagaccacc attttcgctt tgttacgaaa ttgcgaaatt ggcgagccga
     8821 caagcggtaa gatttccgtt ttattttgca aaataaacgg caaaatcaac cgcttgagat
     8881 cggcctcttt ggcggctaat tgcgtgctgt atggcttttc aatccactgg cacgaagtac
     8941 agtcgccacg ctcaaaatgc gaacaatgca acaagctaga cattcgcttc cttccattcc
     9001 agccagttgt tttgtaaggc cgttaattca gcctgagttt gttggtagcg agagctgttt
     9061 tccagctctc gccaagtcac ggttttgcgt ttcattaaag aaaggcgacg ttctttttgt
     9121 gcttgagtcg gctgatattt cagcccgtct aacacttgca ccaggccttc aggctcgtta
     9181 caaaggagca ataaatcaca gccggcttgg attgcttttt cagaacgctc gacaaaattg
     9241 cccataaagc ccgcaccttt cattcccaaa tcgtcagaga atatcacacc gttaaagttc
     9301 agctgtttac gcaatacctc tttaagccaa tagcttgaac cgcttgccgg ctggctatca
     9361 cattgggtgt aaacgacgtg ggcaggcata atggcagaga gttttccttt ggcaataagc
     9421 tgtttgaacg gcagaatatc gtgattaaaa atccgctctt tcgggcgatc atcaaacggg
     9481 gtttctaaat gcgaatcggc taaaacgtgt ccatgaccgg ggaagtgttt gccggtggtc
     9541 gccataccga tttcacgcat tccgtcaata aaggcttcgg caacaggcaa aatcgctgct
     9601 ggctcttgcc cgaatgagcg atcgccaatc gctttgcatt cgtgtcctaa atccagtacc
     9661 ggagcgaaac tgaggtctat atcgagggca aacatttctg ctgccatcaa ccagccggtt
     9721 tctttcgcta attgcattgc ttgctctggc gttgtggcaa gttggttaaa agattgcatt
     9781 gccggcagtt tagtaaagcc ttcacgaaag cgttgcaccc gaccgccttc ttggtcgaca
     9841 gtaataagca acggtttttt cacccgctgg cgaatggatt tcactaatgc ctgaatttgt
     9901 gctttgtcgt agaaattacg ggtgaataaa attagcccgg aaactaaagg gtgttccagc
     9961 atttcgactt cttcttgagt cagttcttta tctttaatat caatcagtaa cataattttc
    10021 gttgagctat ttgcaaaaaa atgagcagat atgaccgctt gttgtgccta ttctacatta
    10081 aaaagccctt gatgttgatc aagggcgaat gattaagggc ataaatgaga cagagcaatt
    10141 atgcttgttc taatttagct tggttacgac gcatttttat gttgagcatt tcaaccacaa
    10201 ccgagaagcc cattgccgta taaaccgctg cttttggaat atgaatatca aaaccttcgc
    10261 cgactagtac aataccgatt aaaatcaaga acgctaaagc gagattttta atggttgggt
    10321 tgttatctac aaagtcccca atggttttcg ctgctaacat cattaccgca actgcaatga
    10381 taatcgcaat aaccattacc ggaatatcat ctgccattgc cacagcagta atgactgaat
    10441 caagggagaa aataatatca aaaattgcaa tttgaattaa caccataaaa aagctggctt
    10501 ttttaatgga ttcgcttttt tcttcgtgag attcggcaga aatggattct ttcagctcca
    10561 ttgcactttt aacaatcagg aataatccac cgatgagtag aatgagatct ctacctgaaa
    10621 ttggattgtt gccaatagtg aaaagaggct cgaccaaacg catcatccaa gcaagcgaga
    10681 gaagcaataa aatacgggtt cccattgcca gccccaagcc gataattcgg gcagattggc
    10741 gttgttcaat aggtaaacgg gaaacgagaa tactgatgac gatgatgtta tcaatgccta
    10801 atacgatttc aagcccggta agtgtaaaga gcgcaaccca agcttcagga tttgtgatcc
    10861 agtcaaacat aaaaatgtcc ttttaaaaat aagggattaa gtgatatttt ctatcaaata
    10921 gaattaaagc cgacatctta tagagtgtga ggacaaattt aaagggggca atgcaaaaag
    10981 ttttgtaaaa tttcggcggt aaaatgttta cgcaaataga aaccaagagg gagagattga
    11041 acaatctccc ctttagcgtt gatagcagag gtgatagagc ggttatttct acctttgggt
    11101 ctgagttgta acacttcgcc taaggttgca ttaattttat gcagttcacc taacacaatc
    11161 aactccatta attcctccca atcttgctgt aggcgggatt cttgtgtgat agtcggagac
    11221 cataaaatcg gctgaccgat atggcgttcg gcaaggggta tctttcgttc cccttcaacc
    11281 ggaatccaaa gcacacggga aagcttatgt ttaacgtggg aggtttccca aataataccg
    11341 ttgttttggg ttaaaggagc aaggctgacg aatgtggttt ccagcggtaa tcctttctga
    11401 ttgaccggaa tggttttcag ctcaatgcct aaatgtgcaa aatcctgttc ggctttactg
    11461 ccggctttcg cacctaaagc ggtttcaatc agagtaccga cccagccttt atctcgtttc
    11521 agatctgctg gtatcggaat atgaagcatc tcggcaattt cacctaaagt gaaccctgcc
    11581 agccattccg ctttgcttaa taatgcctgc tcggttggag agaatgtaga taattgcatt
    11641 gcacttagtt aattagacta aactggcaag cggtcaaatt taggcagaaa tttgcaaaaa
    11701 attactaaaa aataaccgct tgtgaggaaa ttacatccaa gcattactgc gaataacgcc
    11761 tactgcaatg ccttcaattt caatatattc ttgagcaggg tttactacaa tcggttttaa
    11821 ttcatcgttt tcagggtgta agtaaattaa ttcacctttc ttctctaagc gtttaacagt
    11881 cacttcatca tttacccgag caaccaccac ttgcccgtta cgagcggtat tggttttatg
    11941 aacggctaat aggtcaccgt ctaaaatacc gattttttcc attgaattgc catttacttt
    12001 gagtaaataa tcagcacttg gattaaacat cgcaccattc accgggtaat ggttttcaac
    12061 gtgttcaacc gctaaaatag gtgtgccagc agctactttg ccaatcaacg gtaagccttc
    12121 atcttcatcg ttggcagctt ggttttcgtc ttcgactaaa atgcgaattc cacgagatgt
    12181 acctgataac atttcaatat agcctttacg agcaagggct tttaagtgtt cttctgccgc
    12241 attaggtgat ttaaagccga tttcacgggc tatttctact cgggttggtg gcataccggt
    12301 ggtttcaata tggtttttga cgaaatcaaa aatttcttgc tgacgggcag ttagatgttt
    12361 acgcatttta agttaa
//
LOCUS       DANLXB010000070        12076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLXB010000070 DANLXB010000000
VERSION     DANLXB010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(47..123)
                     /locus_tag="PXD41_001282"
     tRNA            complement(47..123)
                     /locus_tag="PXD41_001282"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Pro,seq:tgg)
     gene            complement(148..223)
                     /locus_tag="PXD41_001283"
     tRNA            complement(148..223)
                     /locus_tag="PXD41_001283"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(188..190),aa:His,seq:gtg)
     gene            complement(253..329)
                     /locus_tag="PXD41_001284"
     tRNA            complement(253..329)
                     /locus_tag="PXD41_001284"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(293..295),aa:Arg,seq:ccg)
     gene            complement(488..1210)
                     /gene="rffM"
                     /locus_tag="PXD41_001285"
     CDS             complement(488..1210)
                     /gene="rffM"
                     /locus_tag="PXD41_001285"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL6288817.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            complement(1200..2471)
                     /locus_tag="PXD41_001286"
     CDS             complement(1200..2471)
                     /locus_tag="PXD41_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL6288818.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            complement(2464..3534)
                     /locus_tag="PXD41_001287"
     CDS             complement(2464..3534)
                     /locus_tag="PXD41_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL6288819.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            3721..5142
                     /gene="glnA"
                     /locus_tag="PXD41_001288"
     CDS             3721..5142
                     /gene="glnA"
                     /locus_tag="PXD41_001288"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL6288820.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            complement(5186..6329)
                     /gene="rffA"
                     /locus_tag="PXD41_001289"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             complement(5186..6329)
                     /gene="rffA"
                     /locus_tag="PXD41_001289"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(6316..6960)
                     /gene="rffC"
                     /locus_tag="PXD41_001290"
                     /gene_synonym="wecD"
     CDS             complement(6316..6960)
                     /gene="rffC"
                     /locus_tag="PXD41_001290"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL6288821.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            complement(6957..8204)
                     /gene="wecC"
                     /locus_tag="PXD41_001291"
     CDS             complement(6957..8204)
                     /gene="wecC"
                     /locus_tag="PXD41_001291"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6288822.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            complement(8245..9057)
                     /locus_tag="PXD41_001292"
                     /pseudo
     CDS             complement(8245..9057)
                     /locus_tag="PXD41_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
     gene            complement(9068..10132)
                     /gene="wecA"
                     /locus_tag="PXD41_001293"
     CDS             complement(9068..10132)
                     /gene="wecA"
                     /locus_tag="PXD41_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL6288823.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            10274..11554
                     /gene="hemL"
                     /locus_tag="PXD41_001294"
     CDS             10274..11554
                     /gene="hemL"
                     /locus_tag="PXD41_001294"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL6288824.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
BASE COUNT         3574 a         2802 c         2437 g         3263 t
ORIGIN      
        1 gcccacacag attgtctgat aaattgttaa agaacaaaaa ataaattggt cggcgagata
       61 ggatttgaac ctacgaccca ctggtcccaa accagttgcg ctaccaagct gcgctactcg
      121 ccgtctgata ctcacaagag tattgaatgg ggtggctaat gggattcgaa cccacgacaa
      181 ctggaatcac aatccagggc tctaccaact gagctatagc caccattgtg ttgatagtgc
      241 cgcattgaca tctggcgcgc tcgacaagat tcgaacttgc gacctttggc tccggaggcc
      301 aacgctctat ccaactgagc tacgaacgct tcgatttaca tcaattcaac ttaatgcgtc
      361 gcaacggagg cgtatattat agatttcact ttcccttgtc tagcactttt taaaaaaaat
      421 gtaaaaaaat gtattgtttg gttttatttt attcaaaacg tttaataaat atcaaaaaat
      481 gcgtttttta gagctgattt gtcagatagt aataggcata ttttagtaaa tttaattgtc
      541 tttgccagcg ggttggctgt ttcaatagtc gataaagcca ttccagcccc aaattttgcc
      601 aaattttagg tgctcgtttc actttaccgg caaacacatc gtaagtcccg ccaacaccca
      661 tatataaggc ttgtggatat tgttgttgta actgttggat aaaaagttcc tgttttggag
      721 ttcccattgc cacactaata aacttcgcgc cacttgcttt aatttgctct ataacgtcct
      781 gttcttgctc cgccttaaaa tagccattct gcctaccgac aatattcacc ttccattgtg
      841 ccaattttgc ttccaccttc gttagggtat ccgccgagct gccgaccaaa aacaccggca
      901 catttaacgc tccggctctt tgcattaagg tttcccataa atcggctccg gcaattcgct
      961 ctattttata gtttggatat ttttttcgaa tcgattgaac aacactgatg ccgtctgcat
     1021 agttgaactc ggcttcatct atcactcggc gtaacaacgg atttttttcc gacagaatca
     1081 ctttctcagc attaattgcc actaatcttc cgaactgaat ccgcttttca ttcatcagcc
     1141 aatttgcaaa aatttcccga tttttgaccg cttgtaacgc aatgccccga atgatcactt
     1201 tatcgaacat tattattttt ccccattgaa aggattttcg ccagcaaata gcaagccata
     1261 aatatcagcg tgaaaaagca aaaacgggaa acaaatgcat cgattccctc tcgcactaat
     1321 acgatcaaat tgaataaatt gccgaagcag taggcttgca acaaggcgga attgcacgct
     1381 ttggcgtaag cgaataggtt atctaaggct ttaatcatgg cagctactat ccccattccc
     1441 aacgccataa cgctaaatcc gcccataata tagaaagagc cgagtaaggt aggcgaaata
     1501 gctaaccctg attggttgcc taaaatcact ttggtaaaat aattcgccgt attccagacg
     1561 atctcagggc gttcttgcca taaagattgt gggatatata catagaaatc ccgcacaatc
     1621 ggcattaaac cttgatattc cacctcatta gaaaatacac gagccaaatt ttcccaaggc
     1681 gaaaaagtat ctcggcttaa atataagaag gtgtaaatca tctcgctacc ggaaagggta
     1741 agtttgtaac gggctagagc gaggaagaac atcgccacca cgccgattag gcttacggca
     1801 atcacctttg ataacgacag atagccttgc tgcaatccaa tcaataagaa aaagccaacc
     1861 gctagtgcta aatttgccca tgtgccgccc actgccacat agcttaatat gccgaatgcc
     1921 ccaccaacaa tcagtaacgc ccaccacgct gttttattct tatataggaa gcaaaaaatt
     1981 aacaacgccg gcaataaaaa gtagaaaaat cgttttaatg ccgaaagtat gaccctatct
     2041 ttggcaaaca gttggctata tttttcgagt ttgaaaagca gaaaaccgtt taaataaagg
     2101 aaatatagca gggcaacaac tgccacagcg gcaaggatac aagcggtcgt ttttgcctga
     2161 aaatttgcaa caagagcagt tggttgcgac acagcactcc acaagcgtga atagacaacg
     2221 taataaatca aatagccaac acctgctgcc gtaaaaactt gccattgtgt ttttagctcc
     2281 ggcagcgggt aatcaaagcc aaatgccatt attaacgaaa acggaaaacc ggcgtaaaaa
     2341 gtaacaaaat agagcaaact aaacagtaaa tggaaagaaa tccccgattt ctgataaagt
     2401 tgataaagta agctgaaaaa tagcccgaca gaaacaagat aaaatccgcc aagtggtatt
     2461 aaattattca ttttgcatta attcgattaa tcgctgttgc catagtttag tgtagcccgg
     2521 agcaaaaaac gcaatgcggt ttttatctat gctctttagt tgttgtttgg ttgtttgaat
     2581 ctgtgaagca gtcagatttt ccgccaacaa ataaggcact ttttctgcct gtagatccaa
     2641 cccaaacgga ttggctgaat gtaacacaca aggtacatta tggctaatca aaaggcttat
     2701 cgtgccaatg ccttgctggc gtttaaaatt gaaatagccg agatcacaat ggctcaataa
     2761 cgtaacatac tcttcaaagc tcagcttctt ccgcaaaatt tgcaaatttt ccgccaaaaa
     2821 taaccgcttg ctataggctt ccacctgccg aatatagctt tcattatttt ccgggtagcc
     2881 cattggtatg ataatccgca cattgttccc tagtcgttga tgaatctcgc ttaaggcttg
     2941 aataagctca ttcgctggat cgcctgaatt gccgagcaat atcgtcaagc gatcattttg
     3001 tgtggggcta atttttattt gatcacctaa tttcgtgggg aaatagatta aatgatcctg
     3061 ttctgatctt gtacgcatat ttcgccacaa atgatccaga tcgcctcttg ttgcccaaac
     3121 ctgtaagatt ttttgttggg caacacgccg aaacgggtaa aacagcttaa atttccacga
     3181 agttgccatt tcatataaat ccgcccccca aatatgccaa atcaggttgg tggtcggcaa
     3241 tctgcctaag gctatcgcca gccaaatcca agggttaaac tgcccgtgta acagaaaaca
     3301 agcggtcgga ttttgccgtt tttttgcaat taaggcgttc gcaatcgctt tttgtgaaga
     3361 gaactgctta atccgcaaat gaggaaaagc agtttgcagt gaaggcttgc ctaccacata
     3421 aaaaaaatgt tcggagtctg gcaataacgg caaaagctct tgctgaaaaa aggttaaaac
     3481 ctgttggtta tgatgctcaa tctcggagcc tagaatatga taaatcggca acattacacg
     3541 cttttctctc cccaccatac aaacaatatg caagcggtaa gattttagca aaaatttgca
     3601 acattactgc aacttctttt agctttgaaa cactaaaaaa catcacacac ttggttaaaa
     3661 aatgctatga taaccgagct tttttattat tcatttatcc caacgaggac ttattttact
     3721 atgtcaaacg caatcgctaa tgtatctaaa ctgattcaag acaatgatat taaatttgtc
     3781 ttattaaaat ttactgatat taaaggtaaa gaacacgggg tttcgctccc tgtcagctta
     3841 gttgccaacg atttggaaga cttattcgag gaaggcaaaa tgttcgacgg ttcgtccgta
     3901 gaaggttgga aggcaattaa caaagcagat atgttgttaa tgccgattgc tgaaaccgct
     3961 gtagttgacc ctttcgcccg tattcctacc ctttctattc gttgttccat ttacgaccca
     4021 aacacaatgc agtcttatga ccgtgaccct cgctctattg caacccgtgc cgaaaactac
     4081 ttgaaatcca ccggtatcgc cgatagcgta atgtttggac ctgagcctga atttttctta
     4141 ttcgatgatg tgcgttttag caccgaaatg aacaatgtgt cataccgaat tgacgatgta
     4201 gaagcggctt ggaataccaa ccgtaaattt gaagaaggca acaaagccta tcgtccgttg
     4261 aaaaaaggcg gctactgtgc ggttgcaccg attgataccg cccacgatat tcgctccgaa
     4321 atgtgtttat tgatggaaga gatgggttta gtgattgaag ctcaccacca cgaagttgcg
     4381 acagccggac aaaatgagat cgcaacccga ttcaacagcc tgaccttaaa agccgatgaa
     4441 acccaaatct ataaatacat cgtgcaaaat gttgccgtag aacacggaaa aaccgcttgc
     4501 tttatgccaa aaccgttcgc cggcgacaac ggctcgggaa tgcactgtaa tatgtcatta
     4561 agcaaagacg gcaaaaatgt gtttatgggc gataaatacg ccggcttatc tgaaactgcc
     4621 ctctactata ttggcggtat cattaaacac gcaaaagcat taaatgcctt tactaaccca
     4681 accacgaact cttataaacg tttagtgccg ggttttgaag caccggtgtt attggcatat
     4741 tctgcaagta accgctctgc ctctatccgt attccggctg tgaccagtcc gaaagcgacc
     4801 cgtgtagaag cacgcttccc ggatccaatg gcaaacccat acctttgctt tgccgccctg
     4861 ttaatggctg gcttagacgg tgtgatcaac aaaatccacc cgggcgatgc aatggataaa
     4921 aacttatacg atttaccgcc ggaagagtta aaagatattc caacggttgc ctcgtcttta
     4981 gaatccgctc ttgacgcatt aagcaatgat tttgaattct taacacaagg tggcgtgttc
     5041 acgaaagact ttattgatgc ttatatcggt attcgtcgca aagaggtgga acgtgtaaat
     5101 atgactccgc acccggtaga atttgaactt tactattcat agtaacaaca tatagcaaaa
     5161 aacggctgaa acactcagcc gttttttatt gattgaagaa agcaagcact gcttgaataa
     5221 cacgctcttg ctcctgctta ctcaaattat aaaacagtgg caatcttacc aaccgttcgc
     5281 tttctaaggt agtaaagcga tcatcacctg ctaatcgacc taatttctgc cctgccggac
     5341 tgctgtgcaa cggcacataa tgaaacacgg ttaagatatt ctgtgccttc ataaaatcaa
     5401 taaaagcagt tctctgcttc aagtcactta gctttaagta gaacaaatgc ccgttatggc
     5461 gacaatattc gccaatgcga ggaagctcgc acttagctgt ttgggcaagt ggcaaaaagg
     5521 cttgatagta attgtgccaa agggttaaac gctgttggtt gattttatct gcctctataa
     5581 gctgagcata caaataagcc gcttgaattt ccgacattaa aaaacttgaa ccaatatcct
     5641 gccagcgata tttatctacc tcaccacgaa aaaattggct acggttagtg cctttctctc
     5701 tgatgatttc cgctttttcc agcaaatgcc tcattaatca cgatcgcccc accttcaccg
     5761 ccagcggtat agtttttggt ttcgtgaaaa ctatagcaac caatatgccc gatggaacct
     5821 aacgccctac ctttataaaa cgaattgact gcctgtgccg catcttctac cacataaagc
     5881 ccgtattttt cggctgttgc cattattgaa tccatatcac aagcaatgcc ggcataatgc
     5941 accggcacaa tcactttggt ttttggggta atggcttgct caattttgcg ttcatcaata
     6001 ttcattgtat ccggacgaat atccacaaac acaatctttg ccccacgcaa cgcaaacgca
     6061 tttgcagtag agacaaaagt atagctcggc ataatcactt catcgtccgg ctgaatatcc
     6121 agcagtattg ccgccatctc taacgcagcc gtgcaagaag gggtaagcaa cactttgcta
     6181 cgggccaggt tttcaagcca ctgctcacat aagcgggtga atttaccacc gcccgaaagc
     6241 tgccctgttg ccatcgcctg ttctatatag gcttgctccg cccccacaac cgggggttga
     6301 ttaaacggaa taaaatcagg attgttcatc atcgtatttt tccaaagcag ggtaaaacca
     6361 ataatacacc gccttaatgc ttgcaccaaa cgcttgataa aaacgaatcg ctttctggtt
     6421 actcagctga gtggtaatca tcagtttttt cgcattttgc tgtttcgccc acgctatcgc
     6481 agcatttaac aattccgagc caataccttg ttgtcggcaa tcaggcttta ccgccaataa
     6541 tccgattttc gcttgctgtt gggcaagtaa gcgaaccgtt accgcccctt gaatttgccc
     6601 gtcagcattg cattgaacca agccaatatc atcaaacttg ccttttaccg cattttcaat
     6661 ccaagtccgg taaaagcgtt gattctcttc ccttgaaaaa tagggcgaac gaaaccggct
     6721 atcgggaaat gccgaaccaa acaataagtt caagtcgggc aaatctgcca tatccgccgg
     6781 gcgacaagcg gtcatatttt cagaaaatgt tgcaagtgcc agctcaaatt ccaattctcc
     6841 ctccacaagt acaaaacctt gtttttgcaa cctagcgatt tgcctaaaat catcagccgc
     6901 tacttttact tgcacaattt ctctaccgaa aaaatcggac agccattgat ccggcttcat
     6961 cttacccaca ctcctcgaca atcaataata tgccgttgcc tgatctgttc ccttgaaatt
     7021 tgcttaaatg aagtgtgatc cactaacaag actaaaatgt ctgcctgcga aagtgcggtg
     7081 ttgagatcga ctaaggtgat tttttcgcca gccagctgtt gaatatttgg ctcaaccgcc
     7141 aacaggctac cctgatgcca agcggcaagt tgccgggtaa tcgctaatgc cgggctttcc
     7201 cgcaaatcat caatattcgg cttgaaagct agccctaaac aagcgatggt tagctcactt
     7261 ggcttacaat cttgctccat cgcacagtct gcgaccgatg ttttcacttg ctcgattacc
     7321 cattgcggtt tgctgtcatt cacttctcgt gccgtgcgaa taaggcgagc ctgttggggc
     7381 gatgtggaaa cgataaacca cgggtcaacc gccaaacaat gtccgcccac ccctgctccg
     7441 ggctggagaa tatttactct cgggtgaaga tttgccaatt caattagctc ccacacattg
     7501 atcttcaacg catcacaaat cattgaaatt tcattggcaa aggcaatgtt cacatcacga
     7561 aagctgtttt ccaccaactt gcacatctcc gctgtgcgag ctgtggtggt gacacaacgt
     7621 ccttttgcaa aaatttggta taaatcgacc gcttgttgac tgcattgttc gcttaatccg
     7681 ccgataatgc ggtcattttc aaccaattcc gtcattatat tacccggcaa aacacgttca
     7741 gggcagtagg caatagacac atcggctgga aaggctaaat cagggcgagc ttggcttagc
     7801 cattcggcta aattttctgt tgtaccgaca ggcgaagtgg actccagcac caccaaattc
     7861 cctttacgca aacaaggggc aatcatagcg gcggcatttt gaatataagt gagatcgggc
     7921 tgcttcccgc aaagtggggt tggcacggcg atgataaaag catcggccgg ttgcggtttg
     7981 gcagttgcaa aaaaattacc ttttttgacc gcttgtgtga aggcagtttg taaatccggc
     8041 tcgataatat gaatgttgcc ttgattaagg cttgccacca cttgcggatt aatatccacc
     8101 ccaattactt gcttgccggc attggcaaaa acgactgagg tcggcaagcc gatatagcct
     8161 aaccccagaa tacaaatagt gttaaattca gttttactca tcatcagtta caaagagaaa
     8221 tggcacacta aattgtgtgc cattttagat taaagttccg caggttgagc tttcgctttc
     8281 accgcaaaac tgagcataaa gcccagcagt aagccactta atgccccaat catcagccaa
     8341 aataggcgga tcaggcgatt ctgatttaag tggaacgcta ggcgatttaa ccaagcgata
     8401 agctgtaagt tggttgtcta acggctgaac agaacgcatc atttgcagtt tagctgccca
     8461 atcttgtgag ccttgcttac cgttaatatt caactccgaa gcagttttaa tttgctggaa
     8521 caagactttc catttcgcaa ttaaatcggc gtttaattta tctcgagctt aggtgtttac
     8581 caacggaata aaatcggcta ataatttttg agcctcttcc gcattttctg caattaagct
     8641 gacattatct gccgaagttg ccatatcttt ttcaaaacgg aattgttcaa ctaattcagc
     8701 cgccaccacc gccggtgatt tctttgcaac ctgagctttt aatttcaccg cttctgtttg
     8761 tagcaaatag gcttgaagca agtcggcgga cgtgaggttg cgtttaaatt ccgcataaac
     8821 ctgctcactt gcctgttgct gtgccgtttg gctattcgct tcttggctat tactattcaa
     8881 aaaatggtag gtggaaagta acgagtaata attacctaaa tcgggaatag tcggttgctc
     8941 aaattgagcg gtcactttcc atttttcagg ttgagtataa ctcagcccat aaccggcacc
     9001 tgccccgata gcagcaaata aaattagcac taaaagtcga taaaataagg ttttcacaac
     9061 atatccttta aagttgtttg ctacgttttg cacggcgttt tagacggcga acaaaacggg
     9121 ttacacgcca agcgtgggta atggaatagg cgtataggaa aaacagcccg ataaacatta
     9181 gcatcatcac ccactgattc caataataca cctcgcctaa taccccaatg gtggaacaaa
     9241 atcccgccca gagggtaatc accaataatg cttggcgaga ggtaagccct gctcgcatca
     9301 ttaaatggtg taggtgcaag cggtctggtt tgaacggact tttacctttt ttcaaacggc
     9361 ggataatcac cgcaaccata tcaattaacg gcacggcaat cagccacaaa ccggtaatcg
     9421 ggctaattgg cgagccttgc ccttgggtgc ttaacagcag aatccaaata atggtaaagc
     9481 cgatcagcat actgcctgag tcgcccataa acactttcca tttcgcccca aacaggctca
     9541 aattgaacat tgcatacggc aacaacacaa agataagggc aaagcaccaa tagcccaaac
     9601 ttggttcgcc attaatgaac attaaagtgc caagaccggc aaaactcacg ctggaaagcc
     9661 ctgctaataa gccatcaatc ccatctacca tattaaacgc attaataacg ccaatggtga
     9721 taaacacggt aaagacaatg ccgagccaac ctaattctat actaaagggg gcaataattt
     9781 gccctaaact gctgagcgac aagccactgt aaatcatcgc cccagctagt gctgcttgaa
     9841 tcccggcacg cagtaatggg ctgatgtcaa atcggtcatc taacacgccg ataatcagca
     9901 aaatagttac cgctgtcaga tacagttccg gcagccgcat atcttgccac tgcataaaat
     9961 agaaagtgag attgccgata aataatgcaa taccaccgat taacggaatc aacccctgat
    10021 ggcgtttacg gaagttgggc ttatctacca aaccaacaaa ttccgccacc ggacgcatca
    10081 caatcagggc taaaaaagaa acaataaata cggttaaaaa agtaagccac atacagggat
    10141 tgcctcaaaa aatgagtcat aaaataggaa tgcagaatag cataaggcaa caaaatcgta
    10201 aattttttag cgaaaacaag ggcttttcag tacaataaca ggcaaatttt tacatcaaaa
    10261 gaaaggaatt gatatgtcta tttcagaaca actgtttgaa caagcccaaa aagtgattcc
    10321 gggcggtgtg aactcccctg tgcgtgcatt taaaggcgtg ggcggcacac cggtttttat
    10381 tgaaaaagcc gaaggtgctt atattaccga cagcgacggc aaacaatata tcgactatgt
    10441 cggctcttgg gggccaatgg tactcgggca taaccacccg gcgattattg atgcggtgct
    10501 aaaagccgtg ccaaaaggct taagtttcgg tgccccaacg gcagcagaaa tcacacttgc
    10561 cgaattagtg tgcaaattag taccttctat tgaaatggtg agaatggtga gcagcggaac
    10621 agaggcaaca atgtctgcca ttcgtttggc tcgtggctat accaaccgag ataaaatcat
    10681 caaatttgaa ggctgctacc acgggcattc cgattctctg ttagtaaaag ccggttcagg
    10741 tgctttaacc ctcggtcagc caagcggccc gggcgtaccc gctgatttcg ccaagcatac
    10801 gcttacttgc acctataatg atttagattc agtaaaagca gcatttgagc aatacccaaa
    10861 tgagatcgct tgtttaattg ttgagcctgt tgccggcaat atgaactgca ttccgccaca
    10921 agaaggcttt ttacaaggct tacgtgatct ttgcacacaa tatggtgcgg tatttattat
    10981 tgatgaagta atgaccggct tccgtgtcgc actcggtggg gctcaatctt actatggggt
    11041 aacaccggat ttaaccacac tcggcaaaat tatcggcggc ggaatgccgg tgggggcatt
    11101 tggtggtaaa aaagagatta tggaatacat cgctccaact ggcccggttt accaagccgg
    11161 cacgctctca ggcaacccga ttgcaatggc tgcaggtttg gcatgcttaa ctgaattatc
    11221 aaaagcagga aatgaaacca ttttagcgga aaaaaccaaa accctcgctg aaggctttaa
    11281 agctcttgca gataagcaca atgtgccatt aacggtacaa tatgtcggcg gaatgttcgg
    11341 cttattcttc accgaacaaa aagcagtaaa caacttccaa gaagtaatga aatgtgatgc
    11401 cgccaaattc aaccgtttct tccacttaat gctggaacaa ggcgtgtatt tagccccatc
    11461 ggcattcgag gcagggttta tgtctttagc tcacagtgat gaagatattg ctcgtacgct
    11521 agaggctgcg gataaggcat ttgctcagct ttagaagaat gacaagcggt tgggtttact
    11581 caataatttg caagtttttg agggaatttg accgcttgta gtgcaaattt ctcttacgat
    11641 agcaattatg atggtgttcg tctctgacga gtgcttatac aaactttcat tatgcttaaa
    11701 caagcacccg tctggagacg ggcgctatcg agggaatagg attgataaag caatatatgg
    11761 gcttccaaca cttgcaggca aggacaagtc ttacactttc taatattaca aatatatttc
    11821 tttctttaat ctataccata aaggtttaag ttggttcttt ataactttgg aatccataga
    11881 tgaataagct ctctttccat aagagataaa attagatttt ccgaaatgag aatacttaga
    11941 aaatagcttt cttttataaa tgcctttgat agctacccct cgtcttattc ttatcctatt
    12001 atatttaccc tgagtttgct tagctagact aacccctcgt ttcattttat ttgaatatcg
    12061 tgtaaatgcc gatgat
//
LOCUS       DANLXB010000071        12006 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLXB010000071 DANLXB010000000
VERSION     DANLXB010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12006
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            37..1035
                     /gene="yiaK"
                     /locus_tag="PXD41_001295"
     CDS             37..1035
                     /gene="yiaK"
                     /locus_tag="PXD41_001295"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL6288825.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            1160..1525
                     /locus_tag="PXD41_001296"
     CDS             1160..1525
                     /locus_tag="PXD41_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6288826.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            1589..2068
                     /locus_tag="PXD41_001297"
     CDS             1589..2068
                     /locus_tag="PXD41_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6288827.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            2069..3346
                     /locus_tag="PXD41_001298"
     CDS             2069..3346
                     /locus_tag="PXD41_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL6288828.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            3449..4435
                     /locus_tag="PXD41_001299"
     CDS             3449..4435
                     /locus_tag="PXD41_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6288829.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            4509..5492
                     /locus_tag="PXD41_001300"
     CDS             4509..5492
                     /locus_tag="PXD41_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6288830.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            5623..7107
                     /locus_tag="PXD41_001301"
     CDS             5623..7107
                     /locus_tag="PXD41_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6288831.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            7302..8348
                     /locus_tag="PXD41_001302"
     CDS             7302..8348
                     /locus_tag="PXD41_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6288832.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            8361..9470
                     /locus_tag="PXD41_001303"
     CDS             8361..9470
                     /locus_tag="PXD41_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6288833.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            9575..10465
                     /locus_tag="PXD41_001304"
     CDS             9575..10465
                     /locus_tag="PXD41_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL6288834.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIAILPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            10537..12006
                     /locus_tag="PXD41_001305"
     CDS             10537..12006
                     /locus_tag="PXD41_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL6288835.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         3330 a         2591 c         2903 g         3182 t
ORIGIN      
        1 tttactattt gaaatattga ggtattcaag atgactattc gagtttccta tgaagaatta
       61 aaagctcaat ttaaacgtgt tctgttggct cgcaatgtgc gtgaagagat tgccgaagag
      121 tgtgccactg tgtttgccga caccactcaa gcgggtgctt attcacacgg ggtaaaccgt
      181 ttcccacgct ttattcagca gttagagaac ggtgatattg tgccggaagc cgtgccgact
      241 aaagtgcttt cactgggggc gattgagcag tgggacgctc accaagccat cggtaactta
      301 accgcaaaaa aaatgatgga cagagcaatg gagcttgcat ctgaaaacgg catcggcgta
      361 gtggcgttac gtaatgcaaa ccactggatg cgtggcggtt cttacggatg gcaggcggca
      421 gagaaaggct atatcgggat ctgctggacg aacgcccttg cggtaatgcc gccttggggg
      481 gcgaaagagt gccgtatcgg gactaacccg ttaatcattg cggtgccgac taacccaatc
      541 acgatggtgg atatgtcttg ctcaatgtac tcatacggaa tgttggaagt gcatcgcctt
      601 gctggtcgtc aaacctttgt cgatgctggt tttgatgatg acggcaaccc aacccgtgat
      661 ccggcaacgg tcgagaaaaa cctccgtcta atgccgatgg gcttctggaa aggttcgggc
      721 ttatcgattg tgttagatat gatcgccacc ttgctctcta acggtgaatc cactgcggca
      781 gtcaccgaag ataaagacga tgaatattgc gtgtcgcaag tttatatcgc tattgaagtg
      841 gatcgcttaa ttgacggcaa aaccaaagac gaaaaactca accgtattat ggaatatgtg
      901 aaaaccgcag aacgtgccga ccctgatgtg gcagtacgtt taccgggcca cgagttcacc
      961 caaattctag ccgataacaa agccaacggc attccggtgg atgacaccgt ttgggcgaaa
     1021 ttacaggcgt tgtaattgca aattgaccgg tagggtgggc gtaagcccac gcattagaca
     1081 caatcataag atgacgtggg cttacgccca ccctacaagc ggtcattttt ccgcagaatt
     1141 ttacaaaacg gaggtatgaa tgttttttgg tcatatttca caagttaaag cgaatcgata
     1201 cccgccggcg atccaaattg cgttgaacta tctgaaaaat accgattttg atgcgatgga
     1261 agcaggggtt tacgaactca aaggcagaca aatttatgtg caggtgttgg atttgaacac
     1321 caaatcgaaa cacgaatttc agccggaagt gcatcgcaat tacctcgatg tgcagtatct
     1381 acaccgaggc aaagagataa tggctgcggc ggtggatacc ggcaccaatc cgattgcgat
     1441 ggaatacaac cctgagcggg atattcaata ttatcaatcc gttgccaacg aaaatgaatt
     1501 tcgctgcgtt gaaggcaatt tttgacggca cggaaaccat tcgcaaagtg gtggtaaaaa
     1561 ttgcgatgag cgaaattgag gagcaacgat gaaagcctta gctcaattag tcggaaaact
     1621 gttagaaatc ttggtggtgg tgattttatc cgcaatgtcg attttggttt tcgtcaatgt
     1681 ggtactacgt tacggtttta acagcagcat tagcgtgacc gaagaggtgt ctcgctatat
     1741 gtttgtttgg ttggcgtttt taggggcggt gttggcattt agcgaaaatc aacacgttaa
     1801 agtcacaatg ctgaccgata aattatcgcc aacggctcgt aatatcttaa gcgtagtcac
     1861 agatttagcg atgttgttct gttgctactt aattgtggac ggtagctgga ttcaatttaa
     1921 cctcaacctg aataactttg ccccgatttc aggcttaccg caaggcatca ctttccttgc
     1981 cagcacagtg gcaggggtat taatcggttt attaattatt gcccgcattg tggcaacggt
     2041 tggcgtgatt gcaaaaggag aaaaatagat gactgtggta atttttcttt ccgtcttgct
     2101 tggctcgatt ttattgggca ttccggtagc tttcgccctg ttggtctgcg gtgtggcgtt
     2161 aatgttgcat ttagatctgt tcgatgccca aattttggct caacaaattg tgagcggtgc
     2221 agacagtttc tcgctaatgg caattccgtt cttcattctt gccggtgaaa ttatgaacga
     2281 gggcggtctc tccaaacgga ttatcgacct gccgatgaaa ttagtcggtc ataaacgggg
     2341 cggtttaggt tttgtagcaa ttttagcggc gatgattatg gcaagccttt ccggttcggc
     2401 ggtggcggat accgcagcgg tagtcgcaat gctactgccg atgatgaaaa ccaccggtta
     2461 tccgattgac cgctctgccg gtttaatcgg tacggcaggg attatcgccc caatcattcc
     2521 gccaagcatt ccgtttatcg tatttggtgt ggctagtggc gtgtccatta ccaaactgtt
     2581 cttagccggt attttcccgg gcattatgat ggggatctgc ttggctgccc tttggtggtg
     2641 gcaggcaaaa cgtttggatt taatgacctt ctccaaagcg accaaagaag aactttgcat
     2701 ttcatttaaa aacagtattt gggcgttatt gttgcctgtc attattatcg gtggtttccg
     2761 ctcgggaatg ttcaccccaa ccgaagcggg tgcggtcgca actttctatg ccttgattgt
     2821 ttcactgttt gtttaccgtg aaatgaagtt caaagattta tacaaggtag tgttggcggc
     2881 agcgaaaacc acggcagtag tgatgttctt agtggcagcg gcaaatgtga ccggctggct
     2941 gattaccgta gcggaattac cgatgatgct caccgagctg ttagagccgt taattgaaag
     3001 cccgaccaca ctcttattgg tgattatgtt agcggtgttt attatcggaa tggtgatgga
     3061 cttaacccca accgtgctga ttttaacgcc ggtattaatg ccgttggtgg aagaggcagg
     3121 cattgacccg gtttacttcg gtgtgctgtt tattcttaac acctccatcg gcttgattac
     3181 accaccggtc ggcaacgtgc taaacgtgat taccggcgtg tcgaaactgc cgttcgacca
     3241 agcggctaag ggcgtaatgc cttacctcgt aatgatgatt tgtttactac tgttgttcgt
     3301 gttcttcccg tcactggtgt tagtgccgtt aagctggatg cagtaatggt ttgaaccgaa
     3361 acaagcggtc gaattgacgc aaaaatttgc aaattttttt ggcaaaacag accgcttgca
     3421 actcaatttt taatcacagg agaaccctat gaaattattt aatttaaaaa ccttatttgc
     3481 cttagtggca ggcgttgcgg taatgagcgg ctctgcaatg gcagaaacct cactgcgttt
     3541 tggttatgaa gccccacgtt ccgataccca acacatcgcc gccaaaaaat tcgatgaatt
     3601 attggcagca aaaaccaaag gtgaaattaa attaaaactg tttccggaca gcaccttagg
     3661 taatgctcaa acgatgatca gcggcgtgcg tggcggtact atcgacattg aaatgtccgg
     3721 ctcgccaaac tttaccggct tagagccaaa actaaatgtg attgatattc cgtttatttt
     3781 caaagatcgt gaacacgttt acaaagtatt agacggcgaa gttggtcaag gcttattaaa
     3841 agatttagaa gcccaaggct taaaaggctt agccttctgg gacgttggct tccgtgcttt
     3901 ctccaactca aaacaccctg tgaccaagcc ggaagacatc aaaggcttaa aagtccgcac
     3961 caaccaaaac ccgatgtaca ttcaagcctt caccttacta ggcggcaacc cggtgccaat
     4021 gccactttct gagctttaca ccgcactcga aacccgtgcc gttgatgccc aagaacaccc
     4081 aatcggcatt ttctggtcgg caaaactgtt tgaagtacaa aaacatttaa gtttaaccaa
     4141 ccacggctac accccgttaa tcgtggtgat gaacaaagcg aagtttgacg gcttagctcc
     4201 tgaattacaa accgcattag ttgaagccgc aaaagaagcc ggtcaattcc aacgtgatct
     4261 caacgtgaaa aacgaaaaag agatcatcga aaaattacgc aaacaaggca tcgaagtgat
     4321 cgaacaagtg gataacgccc cgttcaaagc agcgattgaa gcggaagtcc gcaaagcttt
     4381 cgtggaaaaa cacggcgatg aattattgaa aaaagtggat gcgttagcac agtaattgac
     4441 tttattttag tctaaagctc cctccgtttg gggggagttg ttgtatagac tctactatag
     4501 gagagactat gaaactgttt aatttaaaaa ctttagccgc tttcgttgcc ggttttgcac
     4561 tgttttcaac cgcacaagca gaaacctcat tccgctttgc gtatgaagct cctcgttctg
     4621 atactcaaca tattgcagcg aaaaaattta atgatttgct gcaagaaaaa tcccaaaaag
     4681 ggctgaaatt aagcctcttc cctgatagca cgctcggcaa cgcacaaacg gcgattagcg
     4741 gtgtgcgtgg cggtactatt gatattgcaa tgtccagctc ctctaacttt accgggttag
     4801 aaccaaaact gaatgtgatt gatattccgt ttattttcaa agacagagac cacgcctata
     4861 aagccttaga tggagagatt ggtcaaggtt tattaaccgc attagaggct cacggtttga
     4921 aagggttggc gttttgggaa gttggtttcc gagcgttttc caactccaag cacccgatca
     4981 ccaaaccgga ggatattaaa ggcttaaaaa tccgtactaa ccaaaacccg atgtatattc
     5041 aagccttctc tattttaggt gcaaatccgg tgccaatgcc gctttccaag ctttacactg
     5101 cactggaaac caaagcggtt gatgcccaag aacacccaat cggcattttc tggtcggcaa
     5161 aactctatga agtacaaaaa tatttcagct ttactaacca cggttacacc ccgttaattg
     5221 tggcgattaa caaagcgaaa tttgatgcac tgccagccga gcaacaaacc gcattagttg
     5281 aagcggcaaa agaagccgga aaataccaac gccaacttaa cctagaaaat gagcagaaaa
     5341 ttatcgactc gctcaaaaaa gcaggtattg aatttgtgga taacttagat accacaccgt
     5401 tcaaagatgc cgtatcggct gaaacccgca aggcatttat cgagaaaaac ggtgatggct
     5461 tagttaaagc cattgatgca ttggcgaagt aaaaatagag ctacaaagtg ctcggttaaa
     5521 ctaacctcac acgaatcgtg tgaggtacaa gcggtcaaaa tccgcaaaat ttttacacat
     5581 ctttcctcaa aggaggaaca aatggcacag cccattttaa gtatgcagca catcatcaaa
     5641 cgctttggta gccatacggc ggtgaatgat gtcagccttg atatccactc aggcgagatc
     5701 gttgccttac tcggtgaaaa cggtgcaggt aaatcgaccc taatcaaaat ccttgccggt
     5761 atttatgacc gtgacgaggg tgatattctt ttccataacc aaaaaatcca atctgcccac
     5821 gctattgaga aaggcaacaa aaagcccatc gcttttatcc accaagattt aggcctaata
     5881 gaatggatga cgattgccga aaatatggca tttgtaatgg ggttccctcg caaatttggc
     5941 ttgattgact gggcgaaagt gcgagagcag tcgcaaaaag cccttgattt tgtaggcatt
     6001 aaactctctg ccgacactcg agtgtttgat ttaagccgta ccgaaaaagc cttactcgcc
     6061 attgcccgtg cgattgccgt caatgcagaa atcttggttt tagacgaacc tactgcttcc
     6121 ctacctgcct ctgatgtaga gcatcttttc actgtgttaa accgcttacg ttcccaaggt
     6181 gtgggaatga tttatgtgac ccaccgttta gatgaagtga tcgccatttc cgaccgcatt
     6241 ttggtgatgc gggacggttt cccggttgca gaagggcaaa ccaagctcta tgacgtcaaa
     6301 ggcttggtca aagcgattgt aggcgaagag agccgtggca gacagcgggt ggatttacca
     6361 accgatactc ctgaaatttt aagcctgcaa aatgtcgtgg ttggcgacac cggcccggtg
     6421 aatttccgtc tgcacaaagg tgagatgatt gcccttgccg gcttgcgtgg agcagggcag
     6481 gaagaaatcg gccgcttatt atttggggag cgaaccttag acaaaggcga aattcagtta
     6541 gacaagcggt catattctgc taaagatccg caagatgcga tagccaaagg tgtggcattg
     6601 gttgcgggag accgcacccg tgaaagcgtg tttatgtcaa tgactaccag tgagaacctg
     6661 tttatcaacc cggtactaag cggtcattca ccattaaaac gctactcccg ccgtgaagag
     6721 tggggtgaga gctggtacaa attccaacta ttcgatattc gtccgaaaaa tttgtttatt
     6781 gatgccagtg cgttatccgg tggtaatcag cagaaaatcg tgttggcacg ttggatgcac
     6841 ctcaatacgc ctgttctgat tttagaagac ccgactgccg gcgtggatgt aggagcaagg
     6901 gcagagattt acgacttgct caacaaagcc cttgcagaag gggtcgcaat tattgtgatt
     6961 tccaccgact ttgaagagat cgctcatttg tgtaaccgag cattagtctt caaccgaggg
     7021 gaaattgccg gtgaactact gaacgaagag gtgactttcg ccaatttgct ggcgttggca
     7081 tcggatagtc agtcgaaaaa acaataactt actctcgccc gcttgcggga gagagacagc
     7141 taaaaatagc gtcaggctat ttttagcaga gagagggtaa acaagcggtc atttttctta
     7201 aaaaatattg cgaaccctct ccctccgaaa gcctaacggc tttctcctcc ctctcccgca
     7261 agcgggcgag gggaaaatgc agaattttaa cggagtaatt tatggctcaa acaaacatca
     7321 aatcaaccgc actggaacaa ccggtatcta tcgcccgtga cggttttatg gcatggtttt
     7381 cacaaatgtc cactcgttat ggcttactgt ggttatgtgt gttattggtg attattttct
     7441 cacttaccac cgaatctttc gcctcaatgc tgacattaaa tgcgatttta gaaagtaaat
     7501 cgaaaattgc cctacttgct ttggcagcca caactacaat gattgtcggc aaaatcgacc
     7561 tgaacgtggg tttcggtatt gtgttgtggc acattcttgt gattactctg caagtccaat
     7621 acggcttctc gtggtatatg gcgatcttaa tcgtgttagt gattgccgct ctttacggct
     7681 tgctgaatgg gattttagtt gctcttgctg atatcgatag ctttgtggca acacttggct
     7741 caggcacagt gctttatgcc gtagcactct ggcactcggg cggtcgccaa attgtcgggg
     7801 atttacccga tgaatttatc gcactcaaca gcacagaaat tttcggtatc ccgatttctg
     7861 ctttctatgt gctggcagtg gctatcgtaa tgtggttggt gacagaacat accccgaccg
     7921 gtcgttgtat gtatgcggtt ggtggcaacc caacggcagc tcgcctaaat ggtatcaata
     7981 ttaaaaaata caccattgtg ccgtttattg tctctagtgt aatcactgct ttcacaggcg
     8041 tattgatctc tgctcaacaa ggcgttggtc aggcaagtgt cggtatggac tacttactgc
     8101 ccgcattggt tggggcattc ttagggagta ccactattcg cccagggcgt attaacgtat
     8161 ggggaacagt ggtggggatt gccattcttg ccatcggtat ttcaggtatt caacaattcg
     8221 gtggagcgtt ctgggttgag ccactcttta acggtgcaac actgttactt tccatcacta
     8281 ttgcaggcta tgcccaacgc aaacgcttgt taaatcaaaa agctgtacag aaaaaatcga
     8341 ccaactaaga ggatttgatt atgaaaaaag catttcgtac aaccttaact gcaatcgcaa
     8401 ccttaactgc tattgctttc ggaaataatg cgtttgccaa tgacgacccg ttcgtacaag
     8461 aagcaaaaca gcttgtcgca gcagctacgg ctaagcaaga aaaatgggac ggaccgacaa
     8521 ccggccctca attacaaaaa gagaaaactg tgatttttat tgcctctgat atgaaaaacg
     8581 gtggtgtact tggtgtgatt gacggaatga aagaagctgt tggcgtaacg ggctggaagt
     8641 tagatgtatt agacggtgca ggtacggtaa acaaccaact cgccgcactt aaccaagcga
     8701 ttgcccgcaa accggatgcg attgtgattg gtggctggaa cccgaatgtg gcgaaaatcc
     8761 cactacaaaa agcgactaaa aacggcatta aacttgcagc ttggcacgca acaccggagc
     8821 cgggtgcgat tgataaatac ggcattttct acaacgtgac ctctgactca gacgaaattg
     8881 cacgcttatc ggcaatgctt gcggtggcag aatctaacgg taaggcaaaa gcgattattt
     8941 taaccgactc gctatatgaa attgcgttac gcaaagcgaa cgtcatgaaa gaagttatcg
     9001 aaaaatgtaa agagtgtaag gtgttagagt ttatcgacac gccattggcg gatacctcaa
     9061 gccgtatgcc taacctcact ttcagcttac tgcaaaaata tggcgacgat ttagagtatg
     9121 cgttggcaat taacgatctc tactttgact ttatggctcc gtctttacgc accgctggta
     9181 aagataaacc gtttagcatt tccgcaggtg atggctcagt aacggcttat caacgtattc
     9241 gcaatggtga taaacagttt gcaaccgtcc ctgagccact taacttacac ggctggcagt
     9301 tagtcgatga gctaaaccgt gctttcgcta acgaaaaacc gtctggttat atcacaccgg
     9361 ctcacctagt gactaaagaa aatgtggcgt ttgacggtgg tgaaaacaac ctgtatgccc
     9421 cacaaaacgg ttacaaaggc gcttacaaag cgatttgggg cgtgaagtaa tgacgtaggg
     9481 gcaaataaat atttgcctcg aacaagcggt tgttttttgc aaagattttg cgaaatttaa
     9541 ccgcttgtca taaaaaatag agagggtaat acaaatgagc aataaattta tccccaaaat
     9601 ctccaaccct cgttttaatg agctggttgg gaatacgttt gaacttgaag agctttttga
     9661 taaggcaatc tgggcagaag ggccggcgtg gagcaagcca caacaagccc tctattttag
     9721 tgatgtaaaa ggttgcacaa tgtaccgctg gacagagcaa gatggtacac aggttttccg
     9781 ccagccgtct tatttttcta acggcaatgc gtttgatgca aacgacaact tgattacctg
     9841 tgaacacggc aatcgaggta tcagtttaac cacgccaagc ggtgaatatc gttttttggt
     9901 cggtcaatta gacggaaaac gactgaactc acccaatgat gtggtggtaa aatcagacgg
     9961 catcatttgg ttcactgatc caccttacgg tattttgtcg gataacgaag gcaaacagtc
    10021 gccaagcgaa attatcggtt gttatattta ctgctatgat ccgaaaaccg acaagctgaa
    10081 tattgcaact ttcaacacga tgcgaccaaa cggcttggcc ttctcgtcag acgaaaaaca
    10141 actctttgtg gcagatatgt cgagcgtgga atttgacgaa gatggcttac accacttagt
    10201 cgtatttgat gtggacggta ataaactaaa aaatcgccga gatgtggcgg aaattagtcc
    10261 cggcattccg gacggcttcc gaattaaaca aaacggcgta attttctgct cttgtgaaga
    10321 gggaattatt gctattttac ctgacggcac ggagctggga cgatttgtgc tgggtaagct
    10381 aacctcaaat tgtagctttg gcgatgatga acaaacactg tttattactt gttcgaatag
    10441 cgtttatcgt ttaacaatta aatagcagaa tgcattaagt gcgtctgttg tagcattaca
    10501 agcggtttct ttttcaaaat tttttacaaa caaataatgg ataacaaaat gaactacaca
    10561 ctcggcattg attgcggtgg gacttttatc aaagccgctc tttttgatac acaaggtaat
    10621 attcaagccc ttcatcgtga aaacgtttcg gtaatcagtg aacaggcagg ttatgcagag
    10681 cgtgatatgt cacaactctg ggctatttgt gcggaagtag tgcgttcaac cattgaaaaa
    10741 agtggggtaa acccagcgga tattaaagca gtagggattt ccgctcaagg caaaggggcg
    10801 tttttactgg ataagcagaa tcgaccgttg gggcgtgcga ttttatcttc cgaccaacgt
    10861 tcccttgaga ttgttaaaca atggcaggct gaaggcattc cgcaacaact ttacccgatt
    10921 acccgccaaa ctctttggac aggacaccct gtgtcgattt tgaagtgggt gcagcaaaat
    10981 gaaccggagc gttatgcaca aatcggggcg gtgttgatgt cgcacgacta tttgcgtttt
    11041 tgcttaaccg gtgagttgca ttgcgaagag accaacattt ccgaaagcaa tctttacaat
    11101 atggaaaaag gcgaatacga ccaacagtta gccgatttgt tgggaatgcc ggatgtgttg
    11161 gagaaattac caccagtgat tgaaccgaat aaaatttcgg gatatgtgac tgaaaatgcc
    11221 gccaaattaa ccggtttagc ggtgggtacg ccgatagtcg gtggcttgtt tgatgtggtt
    11281 tctaccgcac gttgtgccaa tttagatgac gaaaccaaac tgaatgcagt gctgggaacg
    11341 tggtcggtgg tgagcggcat taccgatcat attgatgcaa gccaatcatt accttttgtt
    11401 tatgggcgtt atgccgaggc agggaaattt atcgtccacg aagcaagccc gacttctgcc
    11461 ggtaatttag agtggtttgt gaatcagtgg aaactcgatt atgtgaaaat caaccaagct
    11521 gttgcccaat taccgccggc ggcaagctcg gtgctgtttg tgccgtttct gtatggctca
    11581 aatgcaggct taggaatgca agccggtttc tatggtatgc aagcccacca tacccaagcc
    11641 catctcttgc aggcaattta cgaaggagtg ttgtttagct tgatgagcca tttaaaccgt
    11701 atgtttatcc gctttccaaa ggctgacgtg ctgcgagtta ccggcggacc ggtgaaatct
    11761 aaagtttgga tgcaaatgtt ggccgattta accggaatgc ggcttgaaat accacaaatg
    11821 gaagaaaccg gctgcttggg tgcggcatta atggcaatgc aaggggttgg gctggatata
    11881 agccaagttc aagccctaaa taatgaaatg caggtgtttg agccaaatcc ggaaaattat
    11941 gcggcttatc agacgaaata tcagcgttac caaaaattaa ctgaagcatt aaatacaatg
    12001 atttaa
//
LOCUS       DANLXB010000072        11981 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLXB010000072 DANLXB010000000
VERSION     DANLXB010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11981
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(4..1710)
                     /locus_tag="PXD41_001306"
     CDS             complement(4..1710)
                     /locus_tag="PXD41_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL6288836.1"
                     /translation="MKKELLCQTAQHSTAQHSTAQRDLNADTSQAFLNELDQTLWTAA
                     DKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQE
                     FSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLID
                     DAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKD
                     ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQ
                     ADRFIQAHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHID
                     KKMDVVMANPPFNQKEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMAL
                     LLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG
                     EVLFINATQIGYLKDRVLRDFTADDIAKISDTYHNWQKQNGYENIPAFCYCATLDEIA
                     KNDFVLTAGRYVGAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGY
                     GI"
     gene            1871..2248
                     /locus_tag="PXD41_001307"
     CDS             1871..2248
                     /locus_tag="PXD41_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL6288837.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            2337..2924
                     /gene="yihI"
                     /locus_tag="PXD41_001308"
     CDS             2337..2924
                     /gene="yihI"
                     /locus_tag="PXD41_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL6288838.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            2938..3405
                     /locus_tag="PXD41_001309"
     CDS             2938..3405
                     /locus_tag="PXD41_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL6288839.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            3405..4772
                     /gene="hemN"
                     /locus_tag="PXD41_001310"
     CDS             3405..4772
                     /gene="hemN"
                     /locus_tag="PXD41_001310"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL6288840.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            4846..7179
                     /gene="lptD"
                     /locus_tag="PXD41_001311"
     CDS             4846..7179
                     /gene="lptD"
                     /locus_tag="PXD41_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL6288841.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(7321..9960)
                     /gene="ppc"
                     /locus_tag="PXD41_001312"
     CDS             complement(7321..9960)
                     /gene="ppc"
                     /locus_tag="PXD41_001312"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL6288842.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
     gene            10085..11053
                     /locus_tag="PXD41_001313"
     CDS             10085..11053
                     /locus_tag="PXD41_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL6288843.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
     gene            complement(11102..11272)
                     /locus_tag="PXD41_001314"
     CDS             complement(11102..11272)
                     /locus_tag="PXD41_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6288844.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(11273..11854)
                     /locus_tag="PXD41_001315"
                     /pseudo
     CDS             complement(11273..11854)
                     /locus_tag="PXD41_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
BASE COUNT         3462 a         2326 c         2647 g         3546 t
ORIGIN      
        1 tgattaaatg ccatatccca acccctttaa attctctgcg atttgctgtt ccaattcccg
       61 cccttgttta aattgttcat tcaataaagc ggtcaattcc tgcatttttt ctgcaaacgg
      121 cacgccgtca ttttcttctt gtaccgcacc gacatatcgc cctgcggtca gcacaaaatc
      181 gtttttggcg atttcgtcca gcgtggcaca ataacaaaac gcagggatat tttcgtagcc
      241 gttctgtttt tgccagttgt ggtaggtgtc gctgattttg gcgatgtcat cagcggtaaa
      301 atcacgcaag acgcggtcct tcaggtagcc tatttgggtg gcgttgataa acagcacttc
      361 accttttctg gctttggctt tattgataat ccaaatgcag gcagggattt gggtgttggt
      421 gaatagctga ttgggcaggg caatcatcgc ttcgacaagg tcagcttgca cgatgttttt
      481 gcgaatgtcg ccttcgcctg aagtttggct gctcattgag ccgttggcga gcaggagtgc
      541 cattttgcct ttgggggaga ggtggtaaat catatgttgc aaccacgcaa agttggcgtt
      601 gccttgcggc ggtgtgccgt atgcccagcg tggatcgttt gctaggcttt cattccacca
      661 ctctttttgg ttaaagggcg gatttgccat cacaacatcc atttttttgt cgatgtgcaa
      721 agggtttagt agggtatctt cgggcttgtc gccaaagtca aagggaatac cacgaatcgc
      781 catattcatc accgccagtt tgcgagtggt ggagttggat tcttgcccat aaacggaaat
      841 ggcgttgcgg ttgcctgcgt gagcctgaat aaagcggtca gcttgcacaa aaaagccgcc
      901 gctgcccata gctgggtcgt aaatccgccc tgaatagggt tcgagcattt caacaatcag
      961 ggtaacgatg gattttggcg tgaagtattg accgcctttt ttgccttcgg caagggcaaa
     1021 ttgcccaaga aagtattcat agacgtgccc taaaatgtct ttggcttgca gatgcacagg
     1081 ttcgccattg tgcataggct gggtgaaatt ggtgcgtgag aacaggtcaa ttaagcctgt
     1141 gagcatttca tcaggcacgc caaagccggc aatgcgttgg agtacgcctt tgagtttggg
     1201 gttttcccgt tcgatggctt caaaggcatc atcaatcaag cggctgacac ctttaaattt
     1261 gtctccccaa ggcaattcat cgccaagatt gagtttgctt aatgatttga tgttgtccca
     1321 gcgggcttgc tccggcaccc aaaagatgtt ttcagcggcg tagtaatctc tctgttccaa
     1381 ctcttcggca agaatttggc taaattcttg ttcgtcaaat agtgcagggt caagatagag
     1441 ttcgctttcg ggggtggtaa gctgggtttt tagcttggct tggaaatcgg taaagctgtc
     1501 ggagatgtat tttaggaaga taaagccaag aacgatgtgt ttgtagttgg cggcatcgag
     1561 gtttttacgc agtttgtcgg cggcagtcca gagggtttgg tcgagttcgt ttaaaaaggc
     1621 ttgacttgtg tcagcgttga gatcacgctg tgctgtgctg tgctgtgctg tgctgtgctg
     1681 tgctgtttgg catagtagtt cctttttgat gtatcaatac taaaaataac ctgtattatt
     1741 ctagcagatt tctgggtaat cgaggagttg ataacattta aaaattagcg ttttgcaaaa
     1801 ttttccaaaa aaagaccgct tgttaggcta taatagccaa ccaaacagac caattcaaag
     1861 gagaatcggt atggaatatc aatttaccca tagtattcac ggggtggtgg caaaatgttc
     1921 gatggatcac gaggcgtttg ctcgttggtt gaatgccgaa ataacggaaa atcctagcca
     1981 gttagcccct attttcgctg aaatagagaa gtgtcgagcc gcatttccga atcattatga
     2041 atgtgtgttt gaagggcggg agtatagtct ctattttgat tatgatgaag tgatggcaaa
     2101 agcaaacaat ttagatgctg cttttgatga tgaggaaatg gaagaaggct ttcaatttta
     2161 caatgaagag agcatcgcat tttgtggctt agatgacttt gagaaatttt tgaaagccta
     2221 ccaacatttt gtgcaaactt atcattgatt gaaatgatta attgaaacca aagctattaa
     2281 gggaatctaa ttccttgtag aatagccgtt tatagcaatt ttaagatatt aaatttatga
     2341 gtcgtactaa aaaaacacgt cgtattaccg acattatgcc ggcaagaaag accgataaac
     2401 ctaaacagcc catgcctaaa ttaggtgggg ggaaaaatcg caaactgacc cgttatgagt
     2461 tagatgctca agcccgtgag gaaaaacgta agcgtaaaca taaaggcttg ccgacaggct
     2521 cacgcaatgc tgatccggca gagcagaaaa aagcagtggt gaaagaggtg aaagatccgc
     2581 gtatcggtag ccgtaaaaaa gtgccgttaa tggtggaatt tgtgaaccag ccggaaaaag
     2641 ggcggacgat taaggctgtg ccggttgagc caatcaaacc aacgctttca ccggaacaag
     2701 agctggagca gttagaaaat aacgaatgtt taaatcagtt gttagatgat ttggaggcgg
     2761 gcaaaacctt atccgcagaa gatcagaaat ttatgaatga atgtttagat cgcattgatg
     2821 aattaatgac tgagcttggc atcgaatatg aagatgaaga gggcgataat ggcgatgcgt
     2881 tattacgcca atttgaaacg atggatatta ataaattccg ctaggtagcc gattatgatg
     2941 ctaagaatat tcctgatggt gcttgccgct ttgattttaa tttcgctggg cgggtatgca
     3001 ctgcacttaa tgctgaaagt gcgagctcag aaaaagcacg aacaagcact gattgaacag
     3061 gcaaagcaag cacaaaaaga tcgttatatt cggattttag acagcattga agttattgct
     3121 cgggcaatga tttcagaaca gtgcgatttt tcggaaggcg ttttacgttt aaaaccgcta
     3181 ttagatgttc tcggcagaaa attaagcgac tatacggcga tgtgggcgtt gtatggcgtg
     3241 gtagaaaata tgccgatttt agatgaacgc aaaaatttaa aacgtaacga aagaatgaag
     3301 ttggatttag agcgggaagc aaaagaagcg gagcttgaat cagacatcaa aaatgagtgt
     3361 taccaattat taaaagatat tgaagaaatg agaaaggcaa tctaatgtca gaaattattt
     3421 gggatttagc ccttattcaa aaatataacc attcagggcc tcgttatacc tcttacccaa
     3481 cagcgttgga gtttaacgaa aattacacca atgaagattt tattcgtgct gcagctcgtt
     3541 accctgagcg tccgctttcg ctttatgtgc atattccgtt ttgccataaa ctgtgctatt
     3601 tctgtggctg taataaagtg attactcgtc atcgccataa agttgaaatt tatttagatt
     3661 atttagagcg tgaaattaaa actcgcgcac ctctgtttca aaatcgttta gtgacccaaa
     3721 tacactgggg tggcggtacg ccgacttatt tagacgaaga tcaatcggca cgtttaatgc
     3781 aaatgctacg agccaatttt gatgtgagcg atgatgcgga aatcagcatt gaaatggatc
     3841 cgcgtgaaat cgaattaagt atgttggatc acctgcgtgc tatcggtttt aaccgtctga
     3901 gtatgggtat tcaggatttc gataaagaag tgcaacgttt ggtgaatcgt gagcaagatg
     3961 aagagtttat ttttgccttg atgaaacggg caaaagaact tggttttgtt tcaactaatg
     4021 tggatttgat ttacggcttg ccaaaacaga atgtggaaag ctttatgtac accttaaaac
     4081 gtgtggtaga gctaaaccct gatcgtatga gcgtatttaa ctatgcccac ttgccaagcc
     4141 gttttgctgc acaagtgaaa attaaagaag agttgttgcc ggctccggaa accaaattga
     4201 cgattttgca aaattccatc gaatttttag gcaaaaacgg ttataagttt atcggtatgg
     4261 atcactttgc taaacctgat gatgagttag ctattgcaca agaaaaaggc attttacacc
     4321 gtaacttcca aggctatacc actcaagaag agtgtgattt attgggaatg ggcgtatcgg
     4381 caatcagctt actcggcgat acttacgccc aaaaccgcaa agaattacaa caatactatg
     4441 ctgatgttga aaccaacggt attgcgttgc ataaaggcat tgcgttaacc caagatgatt
     4501 gcattcgccg tgatgtgata aaagccttga tttgtaattt caaattagat tttgccacca
     4561 ttgaaaagca atatggtatt gattttaaac gttattttgc cgaagattta gctttcttag
     4621 cgccgttggc ggaagatgaa ttattaacga tgaatgacga cagcattgtg gtttccccac
     4681 gagggcgttt attgatccgt aatatttgct tatgctttga tgtctattca agacaattag
     4741 cgagaagaca gcagttttcc cgtattattt aatgagcaag cggtcgattt tggtaaaaat
     4801 tttgcaaaaa cagaccgctt gttcccggct tataaaggaa aaatgatgaa acagcgttat
     4861 agcttacttt ctcttgctgt gatggcagct tgttatagca acagtgccgc agctgattta
     4921 aagcaacaat gtttacttgg cgtgccgcat tttcagggcg aagtggtaga gggcgatcaa
     4981 cttagaatgc ctgttaccat tgaggctgac agtgcggtca ttaaccagcc tcgtgatgcc
     5041 acctacaccg gtgatgtaac gatcaaacaa ggtaaccgtt cgatttgggc ggatcaggtg
     5101 cgggttgagc aagatggcga aaatgcccga atggcgtatt tgcagggtaa ttttaactac
     5161 caagataatt tgattcaggc aaccggttca gatgcgacca tcaatctgct ttccaaagat
     5221 gcgaatttag ctaatgctaa ttaccaatta attggcagac aagggcgtgg cacggcagaa
     5281 tccggtgaat tcggcaacag caaacacacg ctgaaaaatg ccagtttcac ttcgtgctta
     5341 ccgaatgata attcgtggca aattgaagcg aatgaaatga ttcagcacgt tgatgaagaa
     5401 tatgcggaaa tgtggcacgc ccgttttaaa gtgctgggaa tgccggtatt ttattcgcct
     5461 tacttacaat ttccgattgg cgaccgccgc cgtagtgggt tattaattcc aagttttgag
     5521 cgttcaagca aaaacggctg gacatattcg caaccgtttt attggaatat cgcaccgaat
     5581 atggactcga ccatcactcc aacttactat tcacgccgtg gttggcaaat cagcccggaa
     5641 tttcgttatt taacgaaaat cgggcaaggc ttagtggcaa ccgaatatat ggcgaaagat
     5701 cgtttaagcg agtaccaacc gggaaatgat gatcgtaaac gctatttatt ccactggcgt
     5761 cacgcaatga gttttttaac cgattggcgt ttctcggtcg attacaccaa agtgagcgac
     5821 agacgttatt tctctgattt tgattcggat tatggtagca gtactgatgg ctatgcgacg
     5881 cagaatttta aattaggcta ctatcagccg aattataata tctcaatttc aggtaaaaaa
     5941 ttccaaacct tcgatgagtt ggatatcggg ccttatcgcg ttctgccaca aattgatttt
     6001 aactattata aaaacgatct aattaaaggc ggagatttca aattctttgc ccaagcagcc
     6061 cgttttgaaa atgatagtaa attaatgcca aaagcgtggc gtttccacgc tgagccaaca
     6121 ctgaatttcc cattagcgaa ccgctatggt agcttaaatt tagaaaccaa gctctatgca
     6181 acctactatc aacaaacgaa aggtagtgag agtacggaag aaattaagaa aagtgtaagt
     6241 cgtgtactgc cacagattaa gctcgatttt aaaaccgtgt tggaatccga taaacagctt
     6301 ttctctggct atactcaaac gcttgagcct cgggtgcaat atatttatcg cccatataag
     6361 gatcaaagcg atattggctc gaaagcacat cgaagtgtga gcttaggcta tgactctgca
     6421 ttattgcaaa acgactattt ctcactgttt aatgacagac gttatagcgg tttagatcgt
     6481 atttcgtcag caaatttagt caccgcaggt ggcacaaccc gtttctttaa agaggcaacc
     6541 ggtgaagagg tgtttaattt cagcttagga caaacttatt atataagccc gtctaaaatt
     6601 gatgatacct cagataacag cactaaaggt catacgactt catgggcagc ggaatctaac
     6661 tggaaattcc ataagaattg gaattggcat ggtagctatc aatatgatac tcgtttaaac
     6721 caaacggcgt tagcgaatat gtcattgcaa tacaaaccac agtcagacaa attgattcag
     6781 cttaattacc gctatgcaag taaagattac atcaatcaaa acttgaacac gaataagtat
     6841 gggcaatcca ttaaacaagt gggcggtgtg ctaggttggg aattaaccga taaagtgtcg
     6901 gtaatgacca gttattacca cgaccttgca ttgaaaaaac cggtggaagg gcaaatttcg
     6961 cttaactaca acacttgctg ttgggcggca aatgtgtatg tggctcgtcg cttagtttca
     7021 acgccggtag gttcatctga tacgatcaat gatttctact atgacaataa attcggcatt
     7081 aactttgagc tacgctttgg cacaaactac agcaatggtg taacccgtat gctaaaacga
     7141 ggtattattc cttacaccga gccgtatagc attaattaac aaagtaaaaa caaataagta
     7201 aaaatacaaa tcggggcgaa aaatatttgc cccgattttt ttatatttgg ctgataagcg
     7261 gttaaattct gttggaattt tgcaaatctt ccgctaaatt caaccgcttg ccatcgaaac
     7321 ttaacctgta tttcgcatac ctgcggcaat acctgtgatg gtgatcatca atgcttgctc
     7381 tagtacagga tcagcatttt caccttgttt gcgaatccta tctaacaatt ctacctgaag
     7441 tagattgagc ggatcggtat aaatattgcg tagtgcaatc gattctgcga tccaaggtaa
     7501 atcggccatt aattgtccat cgtgagccag tgcaagtacg gttttaagat cagcctgtag
     7561 ttgcgtacgc aacatattgc ctaaacggtg tagttttggc tcgactaggc gttggtcgta
     7621 atattccgcc agccaaatat cagctttact aaataccatt tccagcattc cgatacgggt
     7681 cgagaaaaac ggccattcgt tacacatttc ttttagtaag gtttcattac cttcatcaat
     7741 caactgttgc aatgcttgcc ctgcacctaa ccaagcaggt agcattaagc ggttttgcat
     7801 ccaagcgaaa atccaaggaa ttgcacgcaa actctccact ccgccttttg gattacgttt
     7861 tgcagggcgt gagccaagcg gcagacggga aagttcttgc tctggtgtag cagagcggaa
     7921 atacggtacg aagtctagct cgccacgcac catatcacgg taaatttggc aagaaatatc
     7981 ggaggctttt gctagcacat ctcgccattg ctgctttggc tccggtggtg ggaaaatatt
     8041 cgcttctaaa atcgcactgg catagagttc taaactttca actgccacgg caggtaagcc
     8101 taatttaaag cggatcattt ctccttgttc ggtcactcgt aagccatttt tgagtgagcg
     8161 aggtggctga gaaagtaagg ctgcgtgagc cggtgcgcca ccacgcccga tagtaccacc
     8221 acgaccgtgg aataaggtta attcaatatt atatttttca cataaattaa ccagagcttc
     8281 ttgcgcccga tattgcgccc agccggcagc aagcattccg gcatctttgg cggaatcaga
     8341 gtagccgatc ataatcattt ggtaattgtt gatgacgcca cgataccagc cgatattaaa
     8401 taaatcggtc atcacttttt cactatgatc taaatcgcct agcgtttcaa ataatggggc
     8461 aaccggaata gtaaatttgc accccgcctc tttgagtaaa aggtgaaccg agagtacatc
     8521 agaggcctct cttgccattg aaatgacata ggctgaaatg acaccttcag gttgctcggc
     8581 aacaatttta caagtgtcta acacttcttt agtttcaggg cttggagtcc agttggttgg
     8641 aatcaatggg cggcgagaac tgagttcacg cactaagaat gcctgtttat catcttccgt
     8701 ccagtgagca taatcgccta agccgatata gcgggtaatt tctgcaatcg ccatttcgtg
     8761 gcgggtactt tcttggcgaa tatctaagcg tgataaacct aaaccaaaac agtttatacg
     8821 acgtaagcaa tctagtaatg caccatttgc aataattcgc ataccacagg cttgtaatga
     8881 ctcatagcaa tcaaaaagcg gttcccacaa ttgctgatct gaagttaaaa tgtcactttc
     8941 atcaatagtt gaaattttac cttccaataa ttccgcatag taaatttcgg tattaattaa
     9001 tttctggcgt aatactttta gtaatacgcg atatggctct aaatggttgc catatttagc
     9061 acgaaatgca ggggtacact gtgtaatcga taattcttca gcaagatttt taatatcttg
     9121 taagaacaat tccgtggctt tccaacggtt cattcttaat acacggcgag ttgtttctgc
     9181 cgtgacgaac gggttaccgt cacggtctcc gcccatccaa gaagaaaaac ggacaggggc
     9241 taaatttacc ggatattgca caccaaagtg tttttctaaa tagaagttaa gctgacggca
     9301 aaattccggc acggctttcc ataaactatt ttcaatgact gccataccgc ctttggcttc
     9361 atcaacaggg gttgggcgtt gggttctgat ttcattagta tgccaagcaa gggcaatcag
     9421 ttgcattaaa cggcgcttga ttttatagct ttctgcctca gttaaatcat catgttccaa
     9481 caaattcaaa catttattga tttcaacgtg tttatgcccc agcgaacggc gggttacttc
     9541 cgttgggtga gctgttagca ctaaatcaat cattaggctt tccacggttt taatcacttt
     9601 ttcaacgggg atattttgtg attttagacg aaggaacaga gagtctaatg agcgactacc
     9661 aagtgattca tcaatatgat ggcgagaaac agtttgatgt tgttcagcaa tatttgttag
     9721 atttagaaaa tggctaaatg cacgtgcaac gggtaagaca tcatcgttag aaatattggc
     9781 taatttatct aatagctgtt cacgggcgtt ttcatcgccg gcacgagaat tgcgagataa
     9841 cacacgaatg ctttcgatga gttctagaat gtaatttcct tgcgcatcac gaatcgtttc
     9901 tcccaaaaat tcacctaaca tatggatatt atgctgaatt gttgaatatt gctggttcat
     9961 aaaaaattcc tatggtaaac ataaattaaa ttaggtctaa atatgccgaa aatcgctgaa
    10021 aatagcaaat agatttaatt taatttttga attaaatgat aaaacgcaaa aaatagctgt
    10081 caatatgtgt ttaaaactgt tgttcggttt tgataacttg cctgttgttt atgtgctatt
    10141 cactgttatt caagttggct tatccattaa tggttttaaa ggtattaaat ggttggaaaa
    10201 tgtttcttgt gtgttcctca tcggtattct tgcttatatg ctttatgttg tgaatacaaa
    10261 attctctgta gaaataggcg agcgctttgc caatattgaa ggcacttggg gaatgccatt
    10321 ctgggctgca actacagcat tcttgggtat ttattcaaca atgattttaa atgcttccga
    10381 ttattctcgc cacgttaaaa aaggaacaac cccaacagca acaggtgtga tttatgtatt
    10441 atcaatcctc cctgtaacct tatttatggg tttaataggg ttgttagtta cggcagctac
    10501 aggcaatagt gacccaattg aagtatttgc aactgcaatg gataataaat ttttaacagt
    10561 aataacgtta ttattcattg cttttgcaca ggttacgaca aacgtgttga ataatattgt
    10621 tccgccatct tacattttaa tggattcatt taaaatgaaa tggtcgcatg ccaccatttt
    10681 agtgggcatt ctttctatat gtgtaatgcc ttggaaattg gtaactgctg aatcagcaga
    10741 tggattatct ttgtttatta aaatttactc ggcattctta ggccctattt ttgcggtaat
    10801 ggtcgtcgat tactacatct taagaaaacg tactttaaac gtaaatgact tatataataa
    10861 agaaggtatt ttcaaaggga ttaactgggc agcaattatt gcgattgcta tcggttcgtt
    10921 ttgctcactg attgtggtgg atctctcttg gtatgtcagt ttaattccat caggcttgag
    10981 ctactatatt ttgatgaggg tgttaaaaag ttccgaagct ttccgtaaag ggacagtgct
    11041 agaacatcaa taagatgaca agcggtaaaa tttattaaaa attttaccgc ttgcttttac
    11101 gctaagagtt aaattctttc attagcttat ctacggtttt gcagttttgg ctaaaggctc
    11161 tgcaacgaga acaaagcatt aaatgaactt gcacattaac acgttgtttt aatgtcagtt
    11221 tttgttcttg ggacagagaa actaattcgg taatttgctt acattttaac atttaacctc
    11281 caaaccattt ttgacttaaa cagacctgta actgcaatct tgcccgatac agtaaggtat
    11341 gcacatttgc tggtgaaatc tcacattctg cgcaaatttc ttcggtttcc atttccaaat
    11401 gggaacgcat cataaacacc cttgcttgat ttgccggcag attatttagg caaaattcaa
    11461 atacttgcca gaattgagcg gaataggtat ggctttcggt gttcttccac tcattagatt
    11521 gataagcatc tttatcccaa ccgccatttt cgttaaacaa tttatcggca agatcgtgat
    11581 cgtcttcttc catcagctca gatactgcca ccaatttgcc tttggctttc actaaatcta
    11641 cgatcttgtt ttttaaaatt gcaaaaatct acgtttttaa cgcactttca cctttgaagc
    11701 tgtcggcata tttataagcg ctgacaaacg cctcttgcac cacatcttcg gcaagttcgt
    11761 tattttttaa ctgtaaaaag gcaaacttca ccatttgcag acgaatatct tctagctgcg
    11821 agggggaaat ttgccgtaaa gccggttggc tcattgcgtg atcctttggt aaaaaattga
    11881 gagaaactaa ccgcttgtat cctatttcat aaggttttac ccaacttagg ggatattggt
    11941 atgaagtatt tttaaaccta acatactaat cgtaggggcg g
//
LOCUS       DANLXB010000073        11853 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLXB010000073 DANLXB010000000
VERSION     DANLXB010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11853
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..285
                     /locus_tag="PXD41_001316"
     CDS             <1..285
                     /locus_tag="PXD41_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288845.1"
                     /translation="AYPNLDEWYSASDKERREFIAKHFAEETVRSDRNTPYDYAMCTG
                     RMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQNCAKYIQ"
     gene            complement(321..1073)
                     /locus_tag="PXD41_001317"
     CDS             complement(321..1073)
                     /locus_tag="PXD41_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL6288846.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1112..2359)
                     /gene="clpX"
                     /locus_tag="PXD41_001318"
     CDS             complement(1112..2359)
                     /gene="clpX"
                     /locus_tag="PXD41_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL6288847.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2359..2952)
                     /gene="clpP"
                     /locus_tag="PXD41_001319"
     CDS             complement(2359..2952)
                     /gene="clpP"
                     /locus_tag="PXD41_001319"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL6288848.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3064..3447
                     /locus_tag="PXD41_001320"
     CDS             3064..3447
                     /locus_tag="PXD41_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL6288849.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(3551..3627)
                     /locus_tag="PXD41_001321"
     tRNA            complement(3551..3627)
                     /locus_tag="PXD41_001321"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3591..3593),aa:Asp,seq:gtc)
     gene            complement(3716..4471)
                     /locus_tag="PXD41_001322"
     CDS             complement(3716..4471)
                     /locus_tag="PXD41_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6288850.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(4531..5526)
                     /gene="trpD"
                     /locus_tag="PXD41_001323"
     CDS             complement(4531..5526)
                     /gene="trpD"
                     /locus_tag="PXD41_001323"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL6288851.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(5544..5930)
                     /locus_tag="PXD41_001324"
     CDS             complement(5544..5930)
                     /locus_tag="PXD41_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL6288852.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(5923..6513)
                     /locus_tag="PXD41_001325"
     CDS             complement(5923..6513)
                     /locus_tag="PXD41_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL6288853.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(6523..8079)
                     /gene="trpE"
                     /locus_tag="PXD41_001326"
     CDS             complement(6523..8079)
                     /gene="trpE"
                     /locus_tag="PXD41_001326"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL6288854.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8221..8838
                     /locus_tag="PXD41_001327"
     CDS             8221..8838
                     /locus_tag="PXD41_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL6288855.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            8984..10051
                     /gene="rluB"
                     /locus_tag="PXD41_001328"
     CDS             8984..10051
                     /gene="rluB"
                     /locus_tag="PXD41_001328"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL6288856.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10117..>11853
                     /locus_tag="PXD41_001329"
     CDS             10117..>11853
                     /locus_tag="PXD41_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL6288857.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGI"
BASE COUNT         3301 a         2380 c         2616 g         3556 t
ORIGIN      
        1 gcttatccta atttagatga gtggtactca gcttcagata aagagcgaag agaatttatc
       61 gcaaaacatt ttgcagaaga aacagtaaga agtgatagaa atacaccgta tgattatgct
      121 atgtgcactg gtagaatgtt tgctaaacaa ctgactcgag atgaagtcaa agactaccct
      181 ttggcaaaca ctaagccgca atatttaacc cgtgatagac ggattgagat tatgtctaat
      241 ttacctcgtg aaatattaca aaattgtgct aaatacatac agtaatttta tgagtaacac
      301 cactttggaa ttaagtggtg ttattttaat tttaataatg tctctaaaat catctccaac
      361 ataaactcaa taaagccggt agaatcattt tggctgtctg cgagagaaag catttgataa
      421 taacgttgtt gattttcgta aaccattgtt tcaatcggca accaagcgaa aagtgggttc
      481 cattgtgcta aaaggacatt ttgccataat cgacccattc tgccgtttcc atcactaaag
      541 gggtgaatca tttctatttc atagtgcata accgagcttt taatgagtgc aggtgtatca
      601 tcttgtttag cccaagagaa caactcatta atcaaattct ctacgaattg aggacgagcc
      661 cccatatgca caagttgccc actgaaatta taaatgccga catcttttga acgaaaagcc
      721 cctgcgtcat ttactaagtc agcagtaaga aacttatgtg ctttgagaaa atctttaatc
      781 gagtaaggat tatagtgcat catttcatcg taagcgtcat aggcattttt gacttcacga
      841 atatctttgg ggtgtccgag aacctttttg cccttaatga ttgcggtaac ttgctcaatc
      901 gttaatgaat ttgcctcaat agctaaagag gcttgaattg atctcaagcg gttatttttt
      961 ctaagatgta aattacgctc aaaatccaat tgtagcgttc ccaatttatg agaaatttct
     1021 acaaccagat tcagcatttt agtggtaact gtaaaaggtg gtttataagc cattttgcaa
     1081 taatcctaaa aaattaaacc gcttgtcatt gttactccac cttcggctta tcgccgtttt
     1141 caacacagcc tttgccgatg gtgacttttt tcgcattgag ggttgggaga tcgtacattg
     1201 tgtcaagtaa taagttctcg acaatagaac gtaacccacg agccccggtt ttgcggctaa
     1261 tcgctttttg ggcaattgaa attaatgcat ctttggtgaa gtgcaattca acgccttcca
     1321 tttcgaataa ggcttgatat tgcttgatga tcgcattttt cggctcggtt aagatttgaa
     1381 tcagagcttc ttcgtccaat tcttgcagcg gagtcaccac cggtaaacgc ccgattaatt
     1441 caggaattaa gccgaatttg actaaatctt ccggttcaac ttgtttgaat agctcggtta
     1501 aatcttggcg atctttatct tttttcaatg ccgctgcaaa accgatacca ccttgagtgt
     1561 tggtacgggc ttccacgatt ttatctaaac cggcaaaagc accgccgcaa ataaagagaa
     1621 ttttggaggt gtccaccgga atggtttcgc ctttcgggtg tttgcgaccg ccttgtgggt
     1681 taatgttcgc caccgtgcct tcaagtagtt ttaataaggc ttgttgaaca ccttcgcccg
     1741 atacatcacg ggtaatggat gcactttccg atttacgggt gattttgtcg atttcatcaa
     1801 taaaaacaat gcctcgttcc gcttgttcgg cttcaaaatc gcatttcatt aataattttt
     1861 gaatcacgtt ttcgacatct tctcccacat agcctgcttg ggtaagggta gtagcatcag
     1921 ctaccgcaaa aggtacgttt aaacggcggg caagggtttc tgccaacaag gttttaccgc
     1981 taccggtcgg cccgattaat aaaatattac ttttacctaa ctctacgcca ttagtggctt
     2041 gatggtttga caatgcactt cttaagcgtt tgtagtggtt ataaacggcc accgaaagca
     2101 cttttttcgc gtgttcttga ccgatgacat aatcatctaa atgagcgtgt aattcgtgag
     2161 gtgtcggcac attggtgaaa aaactgcctt catcgtcttg gttttcatca attaacggct
     2221 cttcttcacc gtgtaataag gcgtaggatt cctcgataca ttcattacaa atatagcctt
     2281 ccgtgccttc gactaattga tcgacttcgg tacgtttttt accgcaaaaa ctacagtggg
     2341 gttctttttc aaatgccatt acgccacctc actgcgagaa gttaatactt tgtcgattaa
     2401 gccatactca gcggcttctt ccgcagacat aaaattatca cgctcggtat cggctaacac
     2461 tttttcatag ctctgaccgc tgtgttctgc catacggcgg gtaagggtag ctttcaagcg
     2521 taaaatttct tccgcttgaa tttgaatatc ggttgcttga cctctcgctc cacctaaagg
     2581 ttggtgaatc ataatacgag cgtgcggcag agcaaagcgt ttaccttttg ccccggctga
     2641 aagcaaaaat gcccccattg aagccgcttg ccctgtgcaa agggttgcta catcgggttt
     2701 gatgaagttc attgtatcgt aaattgccaa gcctgctgtt accacgccac ccggtgagtt
     2761 aatgtataaa tagatgtctt tttccggatc ttcggcttct aaaaacagaa gttgtgccac
     2821 aatcaggttt gccatattgt cttccacctg accgtttaaa aaaataatac gttcttttaa
     2881 taaacgtgaa taaatgtcgt aagaacgttc gccttttgag gtctgttcca ccaccattgg
     2941 gactaatgcc attttgtttt cctctgtcgt aatacaaaat ctcgctattc tagcaaattt
     3001 tcagaaaatc attaacaaca agcggtcaga ttgttaaaat cttttgcaaa tgatgaggaa
     3061 attatgacat taacagaaat ttaccaaaaa tttgaacgtt gtaaatcgtg ggaagaaaga
     3121 taccgcttgt taattcagct aagtcgcttg ttaccaaaac caagtgagca agagttggca
     3181 caaatagcgg aaattgaggg ctgtgaaagc cgtttatggt ttgaatttca agctgagcca
     3241 cgaaaagtag tggcatatag cgatgcccgt ttaatgcagg ggattttatt tattgtgagt
     3301 gtagctttaa ctgaaaaaac ggcagaagag ctgaaaggct ttgacttaaa aacgatgttt
     3361 gatgagctaa aaatttcaca aaatttaacc agcacaaggt taaatgggtt gggtcagtta
     3421 cagaaacata taatgatgaa tttgtaattc accctcgccc cttgtgggag agggtgaata
     3481 aaatccgcag gattttattc gggagagggg aatataaaaa acctctgatt tctcagaggc
     3541 ttaaatttgt tggcggaacg gacgggactc gaacccgcga ccccctgcgt gacaggcagg
     3601 tattctaacc agctgaacta ccgctccata ctggtgctaa aataatagtg gtttcctcaa
     3661 cattgagcaa atagtttttg caaaatagtg tttaattggt tgtaaaataa ccactttatt
     3721 tctgcttgat cgccttgata aacagcaacg gcggacggtg ctgtaaatct ttaaattcat
     3781 tgtgccaccg aggttggcct gccagcattg gttcttccat ttgcacaatc tcaaacccgc
     3841 cttgaataag gttattcaca atggttgcca ttgtgcggtg gtaggtttta aagggttgtt
     3901 gaaaccaact tctgtcccgt tcgccctctt cccgataata gttcaagcgg taagcaactt
     3961 gttgtttttc ttggtttttc tcccaacgat agccttctcg gtaacaggtg acaatcgggt
     4021 gttcttgcga gaaaatcagc gtgccacaag cagtcatttt ttgcgaaatt tttgcaagta
     4081 gttcggaaaa atcagcaata taatgaaacg caaaagagct ggttactaca tcgaaatcgc
     4141 cctcgctgat ctcatttaat cgctccatcg gcaggcagta aagggaaaaa tcgttgcctt
     4201 tttgccaatg agcagaaaga tcgctttctg cctgttgtag cattaattca gataaatcca
     4261 accccaccac tttttctgca ccgagcgtta aataatgggc taaatgaact cctgtgccac
     4321 aacctaaatc cagcactttt ttgccggtta agtctggcag tagagagaac attgttggct
     4381 tttccaccac ttcattcata cttattggat tttgtcgaag ttgttggtaa cgctcaaaga
     4441 aaatcggagt gtcgtaaatg ctttttttca cttaatagcc tttaaacaaa tataaaataa
     4501 ggcgggttaa aacccgccac tacgatatga ttagtaagtc gataattttc gcaaagtttc
     4561 taacgctttt ccactctcaa gcgtttcttt tactttttgc acattggctt ttaaatcatc
     4621 ttctccaaag gttttcatta ataatgcgac atttgctgcc accgcatcaa tatgagccag
     4681 tttacctttt ccttgtaaaa tagcggttac tttttcggca ttttctgcag gttcaccgcc
     4741 tttgagatct tctaacgaat ggcgttcaat gccgaaatct tccggcgtta aggtgtaata
     4801 gtcgatctgt ccgttttgaa tttccgcaac ctgcgtttcg ccgtgaacgg caacttcatc
     4861 taaacctgca ccgtatacca caatagtgtg ttcgtaacct aaggctttta cggtttcagc
     4921 atagactttc actaactcag gggagtacac accgagtaat tggcgtttag cgtgagccgg
     4981 gtttaccaac ggccctaaaa tattgaaaat cgtgcgggtt tttaaggctt ggcgaacagg
     5041 ggcggcatat ttgaatccgc tgtggtaggt tggggcaaac aaaaagcaga tgttggtttc
     5101 atctaaagca aggcgtgccg tttcaggtga aacgtcaaca ttaataccta aatggcttaa
     5161 tacatcgctt gagccggttt tacttgatac gctacggttg ccgtgtttgg caattttata
     5221 gcccattgtg gcggcaacaa tcgcacttgt ggtagaaatg ttgatggtat tatgcccatc
     5281 gccacctgtg ccgacaatat ccgcaaaagg gtaatcaggc gttgagaacg gattggcatt
     5341 ttcaagtgcg gcttttgcag cacctgcaat ttcatcaacg gtttcgccac gcagttttag
     5401 agcgattaag gcagcagcaa gttgttcatt tgatacattg cctttaataa cttcactaaa
     5461 aaaacggtga gattccgctt gggctaaggc ttggttggcg aataatttat ctaaaagtgc
     5521 ttgcatagtc tcttcctttt taattagcga tgtgcctgat attccaaatc ggttgcctcg
     5581 ttgccggtca ttccacgaaa gccccagcaa tgctctggct gttctttaat ggtgatttca
     5641 acgtccattg gcacaatgcc gactttggtg tgtaaggcac taaatagtcc tttaattaag
     5701 cgttttttga gctgttcgct ccgcccttgc atcaggttta tttcaatcac aataaaatct
     5761 tggctacggt taattggggg atagaaattt tccgcatcca ataagtcaaa acgcaaagcg
     5821 tggcgttgtt ttggtacgcc aaggctcatt tgcatacagt caaaaatcac gtctgcaatc
     5881 agggctctgc ggtctgctaa ggtttgtttt aatccatata cactaatcat ttttttctcc
     5941 taataaccat tccaccgact gcttaagtaa ttttgtgcct tgcacggtta aaatggattc
     6001 cgggtggaac tggaaaccgc aaatcggtaa ggttttgtgg cgaattgcca tcacaatatg
     6061 ttcaaatttc gcattaacga taaattctgc cggtaattca tcgcccatta atgagtgata
     6121 acgagcgaca agcattggat tgttaatgcc tgaaaacatc gcttggttat cgtgttcaat
     6181 acgagaaact ttgccgtgca atactgtgcc ggtatgcact actttgccgc caaaggcctc
     6241 aattagagct tgatgtccta aacaaatgcc aatcatcggt actttgtctt tcagacggcg
     6301 aataatttcc aataaattgc ctgcctcagc cggattaccc gggccggggg aaagggcaac
     6361 caaacaattt tcggtggttt cagctttggc taaaaaatcc tcaagcggat aatcattgcg
     6421 gaaaatcgtt acctgatgcc ctaattcacg aaattgatcg accaagttat aggtaaaaga
     6481 gtcgaaatta tcaataaaaa gaatatttgc catagtttgt ccttatgctt ttgcattcac
     6541 ctgcccaatc gcttttaaca ccgcgcgtgc tttatggcgt gtttcatctg cctctaattg
     6601 tggatcggaa tccagcacct caccacaacc agcttgcaca taggcaatgc cattttgaac
     6661 aaaggcggaa cggatcacga tacaggtatc taaattgccg tctgaggtta aatagcccac
     6721 cgcaccgccg tagctatggc gtttttgttg ctcgacttgg tagatcagtt gcattgcctt
     6781 aattttcgga gcaccagtta gcgttcccat attcatacaa gcttgataag cgtgcagagc
     6841 gtcaagatct tttctaagtg tgccgatcac acgagaaact aagtgcataa tttgcgaata
     6901 gcggtcaatt tgcattaaat caaccacacg gcgagtgccg gattcgctca cacgagccac
     6961 atcattgcgg gcaagatcga ctaacattaa atgttcggca agctcttttt ggtctaaacg
     7021 cagttctaat tccaaacggg aatctaattc aggatcgata ttaccttgtt catcaaaacc
     7081 gcgtgggcga gagccggcaa tcgggtaaat ttccaactgg cggttggctt gcgaatattt
     7141 caacgcactt tcaggcgacg ccccaaacag agtgaaattt tcgccctgca tatagaacat
     7201 atacgggctt ggattgttga ttttgagctg tttatagctg gcaagagtat tcgggcaagg
     7261 caagctgaaa cggcgagagg gcacaatttg gaacacatca ccgatattaa tatggtgttt
     7321 gagtttgcgg ataatcgctt tgaaatcttc atcttcaata ttggcggttg cctcactcgt
     7381 tgcggtttgg ttcgctagag gcagctcaat atgtgacaga tttgcaagtt tttgcgtaaa
     7441 ttcgaccgct tgttggttca aattggtttg ttcattcggt tcaaaacaga aggtgtttag
     7501 caccgcagtt tcggtttggt ggtcgattgt aaccagttgc tctgctaaat agaaagtgta
     7561 atctgggcaa cttaagccat catcttgcag gctgatattt tccatcggaa taaaatttgc
     7621 caccaaatcg tagctaaata atccgcccaa atagataggc gatgtggaat cagcaaacag
     7681 ttggctcacc gttcttagcc cgtcaaacac ggtggtggtt ttgagcttgc tgtcttcatc
     7741 taactggttg ctgatggttg ggaaaatcgc ttgcaagcgg tcgtttttgt ctaaaaattt
     7801 gcaagtcgga gcagggttta acaggctcaa tgcgtttgca atcaaaggta aaaccgcttc
     7861 tccgtttggg gttaaagcgt ggaaagtcac ggtttgatct tcacagaaaa tatgcactgc
     7921 cgatttcgca aacagcaaac tttttacact gtttttactt tgaatttccg ctgaatctaa
     7981 taatagcgta tgtgggcgtt cgccgcataa tgcgtaataa acacgggtcg tatcggcaaa
     8041 atagggtaat tctgtttgag taatcgttaa ttgaggcata gcaaattcct attcaatttt
     8101 tcgtactatt aaactagtac attaaaaaga agtcaagcaa ttattccaga taattatgcg
     8161 agcttgggcg aacttggtgt ataattagcc caatttttag aaagtcgaag gcttgagact
     8221 atgacacaat ttttttatat ccaccccgac aacccacagc aacgcttaat taaccaagcg
     8281 gtagagatta ttcgaaacgg tggcgtaatt gtttacccta ccgattcagg ctatgctctc
     8341 ggttgtgcaa tgggcgataa gcacgcaatg gatagaattg tagcaattcg taaattgccg
     8401 gaaaatcaca attttacctt agtttgtagt gatttatccg agctttctat ctacgcgttg
     8461 gtcaataatc aagcctatcg cttaattaag aataataccc cgaatcctta tacttttatt
     8521 ctgccggcaa ctaaggaact tcctcgcagg ctgatgacaa agcgtaaaac agtggggatt
     8581 cgtgtgccgg ataatgcgat cgcattggcg ttaatttccg ccttaggtga gccgattctt
     8641 tcttgctcgt taatgttgcc ggagacggaa atgaccgagt cagaccctga tgaaattcgg
     8701 gatcatttgc aaaatcgggt ggatttaatt atccacggtg gttatttagg gcagcagcct
     8761 acaacggtag ttgacttaac cgatgacgtg ccggttatta ttcgagaagg atcgggcgat
     8821 ccaacatcgt ttaattaaat tgatgttgta tgattaatat atagaattat gcgtaggggg
     8881 gctgtgccag tccgtattaa tatcgttatt tggacaggca caggacctgt ccctacaatg
     8941 aaaatcaaat tcagacgctt gtgaaagcga caaaaggaac cttatgacaa cttttcaaaa
     9001 aaaatcaact gcgactttcc gtgcagacaa acgtggtgaa agccgtccct catttaaaaa
     9061 agaagagcaa aaatctgaac gcaaatttgg taaaacgtca gaaaaaccac cacgtccaac
     9121 ttctaagcca ttaacgcaaa gaattgcaaa aaaagtggaa aaaacgaccg ctagtgaagt
     9181 ggcatctcaa gagaaaaaag ccaaagtagt aggtgaaaag ctacaaaaaa tcttagcgcg
     9241 agcagggcaa ggttctcgcc gtgaattaga agagattatc gctgctggac gagtgagcgt
     9301 ggacggtaaa atggctactc ttggtgatcg tgtgcaggtt agctcatcga ctaaaatccg
     9361 cattgacgga catttagtta atttaatgcc ggcacaaaaa gagatctgcc gtgtattaat
     9421 gtattacaaa ccggaagggg aactttgcac ccgttccgat ccggaaggac gatccaccgt
     9481 atttgaccgc ttgcctcgtt taagtggcgc tcgttggatt gcggtcgggc ggttagatat
     9541 taacacctca ggcttattat tgttcactac cgatggcgaa ttagccaacc gtttaatgca
     9601 cccaagccgt gaagtcgaac gtgaatattc ggtgcgtgtg ttcggcaaca ttgacgatgc
     9661 gatgttacaa cgcttacgca aaggcgttca gttggaagac ggaccggcaa actttaaaca
     9721 aattaaggtt gtgggtggca caggcttgaa ccaatggttt gatgtgactt taaccgaagg
     9781 gcgtaaccgt gaggttcgcc gcctgtggga atcgcaaggg gtagaagtca gccgtttgat
     9841 tcgtatccgt tacggcaata tcaaattaga taaaggctta cctcgtggcg gctgggaaga
     9901 aatgggctta gaacaagtca attacttgcg tgagctggta gggttaccgc cggagactga
     9961 aactaaagtg gaagtggggg taaaccgccg ccgaaccaat atccgtcaaa ttcgtaaagc
    10021 ggtaaaacaa catcaaaaat atcgtggcta aacaccatct ttggggctgc attagttctg
    10081 ctaatgcagc tattttcttt caaaaaagga gcatttatgt cttgggatat tgttgcaaca
    10141 ttggcggtca ctgggattgc cgtattttta tttgcaactg aaaaaatgcg aatggacgta
    10201 gttgcgattt tagtgctgtg ttcattagta ttattagggc aggttgatac caaatctgct
    10261 ctgagtggat tttcaaactc agctactgta accgtaactg caatgtttgt attagctgct
    10321 ggtttacaaa atagtggtgc tttagatagt gtaggcagtt tacttgctaa ggtaaaatct
    10381 ccttggttat tcttgcttgt actctgtggc gtaaatgctg ctgtttctcc ttttgtgaat
    10441 aatacggcag tggtcgcagt attaattccg attgtgattg ccgcagcaca gaatataaaa
    10501 atggctcctt ccaaagccct tattccgtta tcattttctt ctcaaatggc aggtgtttgt
    10561 acactgatcg gcacttccac taatctatta gttaatgcaa tcgctcaaaa gcaagggcat
    10621 tccggtttcg gtatgtttga atttgcccct ttggggatta tttttttagt ggttggggtt
    10681 gcctatttat tagtgaccag ccgtttctta ttacccgaat cacatttgca acttgaagat
    10741 ggtgaggggt ttggaaaata tgtttctgaa cttaaagtaa ataaagactc tgtattaatt
    10801 ggcaaaagta catttgaatc aggattaaat gaagaattta atctatttac tattggtgtt
    10861 ttgcgtgatg gggaaagatt atcgacaccg agtcatcaag tattgcaaaa acatgatatt
    10921 ttattgttgc ggggtgaatc ggaaaattta gcaaaagtac gagaaaaata tggattgcac
    10981 cacgttgtgt atggacgccg tgagaatgat gaagataatc tggatgaaga cttgatggtg
    11041 gctgaagtga tgatttctcc tatttctcgt tggataggag ggactattcc tattttacaa
    11101 cagcgttgga ataaaaatgc aacggtgtta ggcattcaac gccaaagtaa agtaattcgt
    11161 gagcgtttac gcaccactgc ttttaaaatg ggggatattt tattactcac attaccaaaa
    11221 gaggatatgg agacgttacg ccaagataaa gactttattg tgttatcttc tgatttagtc
    11281 aaaacggagg aatcgtggaa aagtaaattt gctttagggg taatggtttt ggtggtggca
    11341 acagcagcct taggctgggt tcctatttca gtgagtgcct taattggtgc agttgcgatg
    11401 tgtgttgctg gttgtttaac ggctgaagaa gcctatcaat ctattgactg gaaaatcatt
    11461 ttagtcttag ctggattact gccattaggt gaagcgatgg caaatagtgg ggcggcgcaa
    11521 tttattgttg ataacacgct tggtaaagta ggggagttcg ggcctttagt ggtgttagct
    11581 gtattatatt tactgacaat ggtgttaacc gaatttatga gtaatgcagg gactgccgtg
    11641 ttgcttacgc ctattgcggt ttctaccgct aaaatgttag gggtagatgc ttccccattc
    11701 attattgccg taatgtttgc ggctgcgacc agctttatga cccctgttgg ctatcaaacc
    11761 aacacgatgg tatacggtgc aggtggctat aaattcacag attttattaa aattggttta
    11821 ccgctaaatg taatctattg gattttaggg ata
//
LOCUS       DANLXB010000074        11845 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLXB010000074 DANLXB010000000
VERSION     DANLXB010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11845
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(96..482)
                     /gene="rplQ"
                     /locus_tag="PXD41_001330"
     CDS             complement(96..482)
                     /gene="rplQ"
                     /locus_tag="PXD41_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL6288858.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(518..1507)
                     /gene="rpoA"
                     /locus_tag="PXD41_001331"
     CDS             complement(518..1507)
                     /gene="rpoA"
                     /locus_tag="PXD41_001331"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL6288859.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(1538..2164)
                     /gene="rpsD"
                     /locus_tag="PXD41_001332"
     CDS             complement(1538..2164)
                     /gene="rpsD"
                     /locus_tag="PXD41_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL6288860.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(2193..2582)
                     /gene="rpsK"
                     /locus_tag="PXD41_001333"
     CDS             complement(2193..2582)
                     /gene="rpsK"
                     /locus_tag="PXD41_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL6288861.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(2599..2955)
                     /gene="rpsM"
                     /locus_tag="PXD41_001334"
     CDS             complement(2599..2955)
                     /gene="rpsM"
                     /locus_tag="PXD41_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL6288862.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(3093..3206)
                     /gene="rpmJ"
                     /locus_tag="PXD41_001335"
     CDS             complement(3093..3206)
                     /gene="rpmJ"
                     /locus_tag="PXD41_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL6288863.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(3231..4550)
                     /gene="secY"
                     /locus_tag="PXD41_001336"
     CDS             complement(3231..4550)
                     /gene="secY"
                     /locus_tag="PXD41_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL6288864.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(4553..4987)
                     /gene="rplO"
                     /locus_tag="PXD41_001337"
     CDS             complement(4553..4987)
                     /gene="rplO"
                     /locus_tag="PXD41_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL6288865.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(4992..5168)
                     /gene="rpmD"
                     /locus_tag="PXD41_001338"
     CDS             complement(4992..5168)
                     /gene="rpmD"
                     /locus_tag="PXD41_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL6288866.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(5175..5675)
                     /gene="rpsE"
                     /locus_tag="PXD41_001339"
     CDS             complement(5175..5675)
                     /gene="rpsE"
                     /locus_tag="PXD41_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL6288867.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(5690..6043)
                     /gene="rplR"
                     /locus_tag="PXD41_001340"
     CDS             complement(5690..6043)
                     /gene="rplR"
                     /locus_tag="PXD41_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL6288868.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(6058..6591)
                     /gene="rplF"
                     /locus_tag="PXD41_001341"
     CDS             complement(6058..6591)
                     /gene="rplF"
                     /locus_tag="PXD41_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL6288869.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(6608..7000)
                     /gene="rpsH"
                     /locus_tag="PXD41_001342"
     CDS             complement(6608..7000)
                     /gene="rpsH"
                     /locus_tag="PXD41_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL6288870.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(7037..7342)
                     /gene="rpsN"
                     /locus_tag="PXD41_001343"
     CDS             complement(7037..7342)
                     /gene="rpsN"
                     /locus_tag="PXD41_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL6288871.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(7354..7893)
                     /gene="rplE"
                     /locus_tag="PXD41_001344"
     CDS             complement(7354..7893)
                     /gene="rplE"
                     /locus_tag="PXD41_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL6288872.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(7911..8222)
                     /gene="rplX"
                     /locus_tag="PXD41_001345"
     CDS             complement(7911..8222)
                     /gene="rplX"
                     /locus_tag="PXD41_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL6288873.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(8233..8604)
                     /gene="rplN"
                     /locus_tag="PXD41_001346"
     CDS             complement(8233..8604)
                     /gene="rplN"
                     /locus_tag="PXD41_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL6288874.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(8827..10662)
                     /gene="glmS"
                     /locus_tag="PXD41_001347"
     CDS             complement(8827..10662)
                     /gene="glmS"
                     /locus_tag="PXD41_001347"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL6288875.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(10710..11471)
                     /locus_tag="PXD41_001348"
     CDS             complement(10710..11471)
                     /locus_tag="PXD41_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL6288876.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(11628..11828)
                     /locus_tag="PXD41_001349"
     CDS             complement(11628..11828)
                     /locus_tag="PXD41_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6288877.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
BASE COUNT         3396 a         2680 c         2114 g         3655 t
ORIGIN      
        1 gtaactataa aataaaatta ttttttgatc aaaacgaata aaagaataaa accccggtat
       61 ttctaccagg gttttaagct caattttgat taagattatt ccgcagctgc ttcagttgca
      121 acttctgggc gatccactaa ctcaatgtaa gccattggag cattatcacc tgcacggaaa
      181 ccacatttta aaatgcgagt gtaaccaccc gcacgttgtg caaaacgtgg acctaattca
      241 ttgaataatt tagcaactgt atcaacgttg cgtgtacggg caaaagctaa acggcgattt
      301 gcaacgctgt ctgctttagc taaagtaatt aacggctcaa ctacacggcg taactctttc
      361 gcttttggta aagttgtctt gatgatttcg tgttcaacaa gcgcacttgc catattacgg
      421 aacatcgctt ggcgatggct gctgttacgg tttaattgac gtccactctt acgatggcgc
      481 ataacctatt ccttcttaga aaatctatac cgaaaaacta gtcttctgca atacttgcag
      541 gtggccagtt ttcaaggcgc ataccgagtg ataaaccacg agaagcaaga acatccttaa
      601 tctctgtaag agatttttta cccaagttcg gggttttaag aagttcaact tctgtacgtt
      661 gtactaaatc accgatatag tgaattgtct ctgctttcaa acagttagca gaacgaactg
      721 tcagctctag gtcatctact ggacgaagaa gaataggatc aaattccggt ttttcttctt
      781 tcacttcagg ttgacgaaca tcacgcaaat caacgaatgc agcaagttgt tctgctaaaa
      841 tcgttgcagc acgacggata gcttcttcag gatctaacgt tccgttagtt tccatctcaa
      901 taacaagttt atctaagtct gtacgttgtt caacacgagc agcttcgaca ttgtaagcaa
      961 tgcgatctac aggtgaaaaa cgtgcatcta ctaataaacg accgataggg cggtcatcgt
     1021 tttgagtatg aagacgtgct gatgcaggaa cataacctcg accacgttga acacgaatgc
     1081 gcatattaat tgatgcattc ttatctgtta aatgacagat tacgtgatca ggattcacaa
     1141 tttctacatc gccatcgtgt gtgatgtcgg ctgcagttac agggccaatt ccagatttat
     1201 ttagtgtcaa aataatatca tctttatttt gcacttttac cgctagacct ttaaggttta
     1261 ataatacctc aagaatatct tcctgaacgc cttctttgct gctgtactca tgcagtacac
     1321 catcaatttc aacttcagta actgcacaac ccggcataga tgaaagtaaa atgcggcgaa
     1381 gtgcgttacc taatgtatgg ccaaaaccac gctctaacgg ctctaatgtc actttagcat
     1441 gagttgaact aacttgttca atatttacta agtgcggctt taaaaattct gtcacagaac
     1501 cctgcatttt ttcctctctt tgcggttaag ctaactatta tttagagtaa agctcaacga
     1561 tcagatgttc attaatatct gctgatagat cagaacgctc tggacgacgt ttaaatacgc
     1621 cttccatttt agttgcatca acttctaacc aagttggttt ttcacgttga gttgctaatt
     1681 ctaatgatgc tttaatacgt gcttgttttt tcgatttttc acgaacagca acaacatcat
     1741 caacagaaac ttggaatgaa ggaatgttta ctacacgacc gtttactacg attgatttat
     1801 ggctaacaag ctgacgtgct tctgcacgtg ttgctgcaaa acccatacga taaactacgt
     1861 tatctaaacg accttccaat aatactagta agttttcacc ggtattacct tttaagcggt
     1921 tcgcttctgt ataataatta cggaattgac gctctaagat accataaata cggcgaactt
     1981 tttgtttttc acgtaattga ctaccatagt cagataaacg tggcttgcga gcaccatgtt
     2041 gaccaggcgc tacatcaagt ctatttctac attttgattc aatcgcacga acgcctgatt
     2101 ttaagaataa atcagtacct tcacgacggc ttagcttgag cttaggaccc aaatatcttg
     2161 ccattttctt tctccaattc ttttaacgtc aattaaacac gacgtttttt cggtggacga
     2221 caaccgttat gtggaatcgg agtcacatca gtaatattcg tgatacggaa acctgctgca
     2281 tttaatgcac ggattgttga ctcacgacct ggacccggtc ctttaaccat aacttccaaa
     2341 ttctttaaac caaactcttt aaccatttct gcacaacgct ctgcagcaac ttgagcagcg
     2401 aatggagtcg atttacgaga accacggaaa cctgaaccac ctgcagttgc ccaagctaga
     2461 gcattacctt gacggtcagt aatagtaacg attgtgttat tgaaagatgc gtggatatga
     2521 gctacgccat ctgcaatctg tttttttacg cgcttacgtg cgcgaactgg tgttttagcc
     2581 attatttatc tactccgact attttttgat cggtttgcgt ggacctttac gggtacgcgc
     2641 attagtctta gtacgttgac cacgtaccgg taaactacga cgatgacgta aaccacggta
     2701 gcaacctaag tctaaaagac gtttgatgct taaagttact tcacgacgta aatccccttc
     2761 gacagtaaat ttaccaactt cttcacgcag tttttcaatc tgctcttcag acaattctct
     2821 gatctttaca tcttcagcaa tacccgttgc agcacagatg gcttttgcac gagttttacc
     2881 gataccgtaa attgcagtta atgcgattac agtgtgtttt tgatcaggaa tgttaatgcc
     2941 tgcaatacgg gccactatgc actcctatta tttaagttta ttgatatact gatcttgaaa
     3001 agcccgtttc aggatactca aacagtatat caggacgaat gagctgagca gtataactgc
     3061 tcagcgggtt ctttgcaaga aatatgcgta aattaacctt gacgttgttt gtgtttagga
     3121 tcgctacaaa ttacacgaac cacaccttca cgtttgatta ctttacaatt acggcacatt
     3181 ctttttactg aagcacgaac tttcattgct tatcctttat taacggccta ttaatttaga
     3241 ccttttaagt tagctttctt caacacagaa tcatattgtt gagacattaa atgactctga
     3301 acctgtgcga tgaaatccat aataacaacc actacaatca ataatgatgt accacctaat
     3361 tggaatggca ccttccataa cgacgtaatg atgtaaggaa ccaaacaaac aaaagcaata
     3421 tataacgcac caattaaggt taaacgtgtc attactttat cgatataacg agatgtttgt
     3481 tcgcctggtc ggtaacctgg tacaaacgca cctgatttct taagattatc cgctgtatca
     3541 cgaggattat actgcattcc tgtataaaag aaagcaaaga aaatcactgc cattgtgaat
     3601 aatacaacat acagtggttg acctggctgt aatagttgtg aaaggttaaa taaccactca
     3661 aatccttcgc tttgaccaaa ccattgagta atgcttgccg ggaataaaat aatacttgaa
     3721 gcaaaaattg ccggtattac ccctgccata ttcactttta atggtaagtg agaagttctt
     3781 gcaggcgcca tcattcgacc ttgttggcga cttgcatagt ttacaactat tcttctttgt
     3841 ccacgttcaa caaaaacaac aaaataagtt actgcaaatg caattattgc aactagtagt
     3901 aagacgataa atgataactc gccttgacgg gcttgttcta ttgtctgccc tatcgttgct
     3961 ggaagatctg caacaatacc tgtaaaaata atcaatgaga taccgtttcc gataccacgc
     4021 tcagtgattt gttcgcctag ccacattagg aacattgttc ctgtcactaa gcttactaca
     4081 gaggttacat agaataatat acttggatta ggaactaatc catgtaccat attcggtagg
     4141 gctagtgaaa taccaataga ttgaataaat gctaataaca gtgtgccata gcgtgtatat
     4201 ttactgattt tccgacgacc tgcttcacct tctttcttta attcagctag aggtgggtga
     4261 atcgctgtca ataattggat aataattgac gctgaaatat aaggcataat acctagtgca
     4321 aatatagatg cacggcttaa agcaccacca gagaacatat taaacatatc aatgatggtg
     4381 ccttgctgtt gtcgaattaa ttcggataat acagaagcat caatgccagg aacaggtata
     4441 aaagaaccga tacggaaaac gattaacgca cctaaaacaa acaatagtct tgatttaagc
     4501 tcgccagtcc ctttttgtgt actaccttgg taccctggtt gctttgccat ctttattcct
     4561 cgatagaacc gccagcagct tcaatagcag ctttagcgcc tttagttaca cgtaagcctt
     4621 taacaactac tgctctttca attttgcctg ctaaaattac tttagcagat aaaatatctt
     4681 tagtaatgat gtttgctgct tttaatgtct ctaaagttac ttcgttgcca tctactttag
     4741 ctaagtcgtt taaacgaatt tcagccacat ggaatgattt taatgaagta aaaccaaatt
     4801 ttggcaaacg acgatataaa ggcatttgac caccctcgaa accacgacga acaccgccgc
     4861 ctgtacgaga tttttgacct ttatgaccgc gcccaccagt tttacctaaa ccagaaccaa
     4921 taccacgacc tagacgtttt gcactgtgct tagcaccttc agctggagaa agagaattta
     4981 aacgcattct attactcctc tactttaacc atataagaca cttgattgat cataccacgc
     5041 actgctggtg tatcttcaag ttctacagta tgacgaatat gacgaagacc taagcctttt
     5101 aacgttgctt tatgtttcgg taaacgagcg atagagctac gagtttgagt tactttaatt
     5161 tttgccatat ccaattaccc caaaatttct tcaactgttt tgccacgttt tgcagcaacc
     5221 atttcaggtg atttcatgtt ctcaagtgca tcgattgttg cacgaacaac gttaattggg
     5281 ttagttgaac catacgcttt agaaagaacg ttacgaacac ccgcaacttc taatactgca
     5341 cgcattgcac caccagcgat gatacctgta ccttcacttg ctggttgcat aaatacgcgt
     5401 gaacctgtat gtgaaccttt aactggatgt tgtaatgtac cttcatttaa agctacatta
     5461 atcatattgc gacgagcttt ttccatcgct ttttggattg ctgctggaac ttcacgtgct
     5521 ttaccgtgac caaaacctac acgaccgtta ccatcgccca ctactgttaa agcagtgaaa
     5581 ctcataatac gaccaccttt tacggttttt gaaacacggt taaccgcgat tagcttttcc
     5641 tgcagttcac cagcttgttt ttcgatgttt gacatctcaa attcctctat tagaactgta
     5701 gaccagcttc acgagcagca tctgctaatg attgcacacg accgtggtat ttaaaaccag
     5761 aacggtcaaa agcaaccgct ttaatacctt tggcaattgc acgctcagca acgattttac
     5821 ccactactgc tgcggcttct ttattgccgg tatatttaac ttgctcttta attacttttt
     5881 caacagttga agctgctgct agtacttctg agccattagg tgcaatcacc tgcgcataga
     5941 tatggcgagg tgtgcgatgc acaactaaac gtgttgcacc ttgctctctc attaaatgac
     6001 gtgcacggct tgcacgacgg atacgagcta ctttcttatc catagtgtta ccttacttta
     6061 ctttttcttc gcttcttttg tacgcactac ttcatcagag taacgtacac ctttaccttt
     6121 ataaggttca ggtttgcgat atgcacgaat atctgctgcc acttgaccaa ttaactgttt
     6181 gtcagcactt ttcagaataa tttctgtttg tgatggacat tcaccagtta cgcctgctgg
     6241 caacgtgtgt tctactgggt gagagaaacc taaacttaaa gcaacagcat tgcctttcat
     6301 ttgtgctcta taaccaacac ccactaattg caatttctta gtaaagcctt cagtaacccc
     6361 gattaccata ttatttacta gtgcacgagc agtacctgct tgagcatctg cattagcgat
     6421 accttcacgt ggagcgaaag ttaatgcatc tgcttcttgt tttacttcaa ctgcattgtg
     6481 aatttcacga gataactcgc cgtttttacc tttaactgtt aatagctgac cgttaagttt
     6541 tacctcaaca ccggcaggaa tattaacagg tgcttttgca acacgagaca tttttcctac
     6601 ctctctatta tgctacgtaa cagataattt caccgccgag gcccgcttga cgcgcagcac
     6661 ggtcggtcat tacaccttta gatgtagaaa caactgcgat acctaaacca cccattactt
     6721 ttggtaattc gtctttgcgt ttataaatac gcagacccgg acggctcaca cgttggatac
     6781 tttctacaac cggtttgttt tggaaatatt ttaaagtaat ttccagttca ggtttaacac
     6841 cttcaacaac tttaacgctt tcgatataac cttcttcagc taaaacattt gcaatagcaa
     6901 cttttaactt agatgaaggc atactgattg caactttgtt cgcagcttga ccgttacgaa
     6961 tacgggtcag catatctgcg attggatctt gcatgctcat gtatttactc ccatgattcc
     7021 aaattaaaag aggttattac cagcttgcct tcttaagacc cggaatttca ccgcgcatag
     7081 cagcttcacg aaccttaata cggcttaaac caaacttacg aagtacgcca tgtggacgac
     7141 cagtttggcg gcaacgatta cgctgacgga ttgggctaga atcacgagga agtgtttgta
     7201 attttaacac tgctgcccaa cggtcttcat cagatgcatt cacatcagag atgattttct
     7261 ttaattcttc acgttttgcg tagaatttat cagctaattt agcacgtttt acatcgcgtg
     7321 cgatcattga ttgttttgcc acgataacct accttattta cggaatggga aattgaaagc
     7381 agctaataaa gcttgacctt cttcatcagt tttcgctgag gtggtgatag taatatctaa
     7441 accacgaaca cgatctactt tatcgtagtc gatttcaggg aaaatgattt gttcacgaac
     7501 acccatactg taattaccac gaccatcgaa tgacttagcg tttaaaccgc ggaagtcacg
     7561 aatacgtgga acagcgatag taatcaatct ttcaaagaat tcccacatac gttcaccacg
     7621 tagggttact ttgcaaccga ttggataccc ttgacggatt ttaaagcctg caacagattt
     7681 gcgagcttta gttactaaag gtttttgacc gctgattgct gctaaatccg ctactgcgtt
     7741 atctaacagt tttttgtcgg tcaatgcttc acccacaccc atgttaaggg taatcttttc
     7801 gattcgtggg acttgcatga cagatgagta gttgaatttt gcttttaatt cattaactac
     7861 tgtatctctg tagtaatcat gcagtttcgc catcacatta ctccagttaa ttaaattgtt
     7921 ttctcgttag atttgaagaa acgcactttt ttgccatctt cgaatctaaa tcctacacgg
     7981 tcagctttgt tggtttcagg gttgaagatc gcaacgtttg aaacatcgat tgcagcttct
     8041 ttcttcacta aaccaccagc tttgcctaat gcaggaactg gtttttcgtg tttagtgatg
     8101 atgttgatac cctcaacaaa aactttacca tttggtaaca ctttagttac cttaccacgt
     8161 ttgcccttat ctttaccggt aagaacaatt acttcatcgt tttgacggat ttttgcagcc
     8221 attacattct ccttatagta cttctggagc taaagagatg attttcataa acttctcaga
     8281 acgaagttca cgagtcaccg gtccaaaaat acgagtaccg attggttgct cagtgttatt
     8341 gtttaaaatt acacaagcat tgccatcgaa acgaataact gcgccatctg ggcgacgaac
     8401 acccttcttg gtgcgcacaa caactgcttt taacacatca ccttttttca ctttaccgcg
     8461 tggaattgct tcttttacag taactttaat gatatcgcca atagcagcgt aacgacggtg
     8521 cgatccacct agaaccttga tacacattac gctacgagcc cctgagttat cagcaacatc
     8581 cagcatagtc tgttcttgga tcatattagt gctccgttaa aataaaaaaa caccctttcg
     8641 ggacgaacct atttatacaa atataaatag ggtgcaaaat atactacaaa aaccactagt
     8701 taatcaagtg aatttttaag ctaatttaat agtttaagta agcttattta taaattgttt
     8761 caactatcaa taaactgtcc tataactcat ataaaaaccc caagatatct tggggtttaa
     8821 ctaacattac tctacagtca ccgcttttgc aaggttacga ggttggtcaa cgtccgttcc
     8881 tttgattaag gcaatgtgat atgaaagtag ttgtaacggc acggtgtaga aaatcggtgc
     8941 ggttacttca tcaactttcg gcattacaat cgttttgaag ccttctgctt cttcaaaacc
     9001 tgcatcgtga tcggcaaaca catataactg accgcctctt gcacgcactt cttcaatatt
     9061 ggatttcact ttctcaagca agtcattttc cggtgctacc accactaccg gcatatcgct
     9121 atcaattaat gctaacgggc cgtgttttaa ctcgcctgcg gcataagctt ctgcgtgaat
     9181 atatgaaatc tcttttaatt tcaatgcaga ttccatcgca accgggtaat attctccacg
     9241 acctaagaac aatgtgtggt gtttatccgc aaaatcttcc gataattttt cgatttgttt
     9301 atcgaacact aacgcacttt caatttgtgc tggtaagcgt tgtaaagatt gcacgatatg
     9361 gtgttcttgc tcttcactca ttctgccttg taagcgtcca atcgccacat ttaataacaa
     9421 taagcaagtt aattgagtag tgaatgcttt ggttgatgct acaccaattt caacaccagc
     9481 tttggttaag aatgcaaaat cggattcacg cactaatgaa gaacttgcca cattacacac
     9541 cgtcattgcc gccatatagc cagattcttt cgctaaacgc agtgcagcta acgtatctgc
     9601 ggtttcacct gattgtgaaa gcgtgattaa taagctgttc gggcgagtaa cgaatttacg
     9661 gtaacggaat tcggaggcaa tttccacatc acagctcacg cctgcaatgg attcaaacca
     9721 ataacgtgaa accataccag cattgtaaga ggttccacaa gccacaattt gcacgtgttc
     9781 tactttcgat aaaatctctg ccgcattcgg tgcaatggct gaaatatcta ctttaccgtc
     9841 tttgatacga ccatctaagg tattcataat cgcaaccggc tgctcaaaaa tctctttttg
     9901 catatagtga cgatattgtc ctttatctgc cgcgtctgcc tcaaaattgc cttcgtgaat
     9961 ttcacgctct gccttgttgc cttcacggtc ataaatatcc actgtgcgac gggtaatttc
    10021 ggctacatca ccttcttcta gataagcaaa acggcgagtt acgcttaata atgcaagtgg
    10081 gtctgaagca aggaagttct cgcctacacc gtaaccaatc actaacgggc tacctgagcg
    10141 agccacaatt aaatgctccg gctcttcttc atttaatacc actgtgccgt aagcaccacg
    10201 cagttgcacc acggtttttt gtaccgcttc caataatgaa gaagcagaac gcaattccca
    10261 ttcaactaaa tgagcaatga cttcggtatc ggtttgagat tggaacacat aaccacgctc
    10321 ttgtaacact atttttaact cttcgtagtt ttcgataatc ccgttatgaa ctactgcaat
    10381 tttgccactg cggtgtgggt gagcattagt ttctgacggc tcgccgtgcg ttgcccagcg
    10441 agtgtgtgcg atcccagtgc cgcctaatag tggcttagtg tctaacgcct catctaaggc
    10501 tttgacttta ccgacacggc gtacaatttg cattgtttta tcatctgcat ttaatactgc
    10561 tacaccagca gagtcatatc cacggtattc taagcgatgt aaaccatcaa ccaagatttc
    10621 tgcgatatca cgttgtgcta ctgcacctac aattccacac ataaatttgc tttcctatgt
    10681 ttaagtttaa aaattcattt gagctactgc tattttgcaa taaccacttc gacacccatt
    10741 ttttcgattt gttctttcgt ttcaaaactt aattgactgt cggtaataat tttggtaata
    10801 ttttgccatt tcaattcaat attcggcatt ttccgaccga ttttttgcga ttcaattaac
    10861 acaatcactt cacggctcac ttctgccatc acctgactta agccaactaa ttcattaaag
    10921 gtagtcgtgc ctcgagccaa atctaaaccg tccgcaccaa taaaaagctg atcgaaatca
    10981 tatgaacgca atacctgttc tgctactttg ccttgaaagg actcagaacg gctatcccaa
    11041 gtgccgccgg tcatcaacac tgttggttcg cattcgaggg aagtcaattc cgtcgctaaa
    11101 ttcagcgaat ttgtcatcac caccaagccg gtttggttca atgcttttac caaagctccg
    11161 gtcgtgctgc cgctgtcaat aatgatgcga ttatgatcac gaatacaatc acgtgcggct
    11221 tgagcaatca ttttcttttg aatcgaaagt tgctcaataa acgcttcttc catcatttcc
    11281 gatggaattt ttaccgcccc accatactta cgcaataaaa aaccactttc ttccaaagcg
    11341 gttaaatctt ttctaatcgt aacttcagac gtctcaaaga aatgagcgag ttcatctaca
    11401 ctcacttcat ttttctcttg taccatttga acaattaaat ggcggcgttg ttgcgtgtta
    11461 cgttttgaca ttataatctt cacttaaatt tcgtttcaaa acttttgcat tataaagaaa
    11521 gctcgcgaaa agaaaagcag aaaatgcaaa atttacaaaa tctatacaaa ataaaaccgc
    11581 ttgtaatatt gatttacaag cggttgattt cttgaaattt tttgcaatta tttgatttgg
    11641 ctaccaatca cgccaccaag tgcggcacca cctaaagttg caccggtaga ttcaccaatc
    11701 gcgtgaccag ccacaccgcc aattgctgca ccgattgcag tattacgttg cgtttttgtc
    11761 atattgttac agccagacac agcaaccatt aataccattg caccaacaac tttcaaaata
    11821 gatttcataa taatccctca taatt
//
LOCUS       DANLXB010000075        11708 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLXB010000075 DANLXB010000000
VERSION     DANLXB010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11708
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            105..1997
                     /gene="mnmG"
                     /locus_tag="PXD41_001350"
     CDS             105..1997
                     /gene="mnmG"
                     /locus_tag="PXD41_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL6288878.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2092..2316
                     /locus_tag="PXD41_001351"
     CDS             2092..2316
                     /locus_tag="PXD41_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288879.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2329..2943
                     /gene="rsmG"
                     /locus_tag="PXD41_001352"
     CDS             2329..2943
                     /gene="rsmG"
                     /locus_tag="PXD41_001352"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL6288880.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3211..4659
                     /locus_tag="PXD41_001353"
     CDS             3211..4659
                     /locus_tag="PXD41_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288881.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4682..5728
                     /locus_tag="PXD41_001354"
     CDS             4682..5728
                     /locus_tag="PXD41_001354"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL6288882.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5731..6369
                     /locus_tag="PXD41_001355"
     CDS             5731..6369
                     /locus_tag="PXD41_001355"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL6288883.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6388..7368
                     /locus_tag="PXD41_001356"
     CDS             6388..7368
                     /locus_tag="PXD41_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6288884.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7430..8770)
                     /locus_tag="PXD41_001357"
     CDS             complement(7430..8770)
                     /locus_tag="PXD41_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6288885.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8960..10033)
                     /gene="glpQ"
                     /locus_tag="PXD41_001358"
     CDS             complement(8960..10033)
                     /gene="glpQ"
                     /locus_tag="PXD41_001358"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL6288886.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10103..11548)
                     /gene="glpT"
                     /locus_tag="PXD41_001359"
     CDS             complement(10103..11548)
                     /gene="glpT"
                     /locus_tag="PXD41_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL6288887.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3389 a         2457 c         2504 g         3358 t
ORIGIN      
        1 atttagatct taacctctct aaaaatctat ttcccagatg atcccttttt acgctaaaat
       61 atgcgttcat ttttcagcag aatttgtaag atagtagaag agatatgatt tacaaccaaa
      121 tttacgatgt gatcgtggtc ggcggtggtc acgccggcac agaagcggcc ctagcaccgg
      181 cacgaatggg cttaaaaacc ctgattttaa cccacaatgt tgatacctta gggcaaatgt
      241 cgtgcaaccc ggctatcgga gggatcggca aaggccatct ggttaaagag atcgatgcga
      301 tgggcggttt aatggcaaaa gcaacagacg ttgccgggat ccaattccgt accctaaaca
      361 actcaaaagg gcctgcggtg cgtgccaccc gtgcccaagc tgaccgtgtg ctttaccgta
      421 atgcggtacg cactgcgtta gaaaatcaac caaatttaga tattttccag caagaagtag
      481 tggatatttt ggtggaaaac aaccgtgcag tgggtgcagt taccaaaatg ggcttaacgt
      541 ttaaagcccg tgcggtagtt ttaaccgctg gtacgttctt agcgggtaag atccacattg
      601 ggttggataa ctatgcaggt ggtcgtgccg gcgatcctgc tgcaacaatg ttggcagatc
      661 gtctgcgtga tctgaatttg cgtgttgatc gccttaaaac aggtacacca cctcgcctcg
      721 atgcccgtac catcaacttt gacgtacttg ccaaacagca cggcgatgag gtgttacctg
      781 tcttctcttt tatgggcgat gtctcacagc acccacgcca aattccgtgc tacatcaccc
      841 acactaacga tcaaacccac gatttaattc gcaacagtct tgatcgcagc ccgatgtaca
      901 ccggtattat cgaaggggtt ggtccacgtt actgcccgtc tattgaagat aaagtaatgc
      961 gttttgccga tcgtaatagc caccagatct accttgaacc ggaaggctta aatacgattg
     1021 aggtttaccc gaacgggatc tccaccagct tgccgtttga tgtgcaaatg gggatcgtca
     1081 actcaatgaa aggcttggaa aacacccgca tcatcaaacc gggctatgcg attgagtacg
     1141 actacttcga cccgcgtgat ttaaaaccaa cccttgaaac caaagcgatt gacggtttat
     1201 tctttgccgg acaaattaac ggcacgaccg gttacgaaga ggcaggtgcg caaggtttgc
     1261 tggcagggat taacgcagcg ttacaggttc aaggtaaaga ggcgtggtat ccaacccgtg
     1321 atcaagccta caccggcgtg ttggtggacg acctctgtac attaggcacc aaagagccat
     1381 accgtgtgtt tacctctcgt gccgaatacc gtctgttgct gcgtgaagac aatgcggaca
     1441 ttcgtttaac accaaaagcc cacgaactag gattaattga cgaggcacgt tgggtgcgtt
     1501 tcaaccaaaa aatggaagcg attgagcaag aaagagctcg tttgaaatcc acttgggcac
     1561 atttgcaaat gccaaatctg gacgaattga acgcgttatt ggctaatcct ttagcccgtg
     1621 aagcaagcgg tgaagactta atccgccgtc ctgaaatgag ttacgaaaag ctgacccaaa
     1681 tcgccctatt tgcccctgct attgaagaca agcaagtggc agaacaggtg gaaattgcga
     1741 tcaaatatca gggctatatt gagcatcaat acaacgaaat cgaacgccat aaacgccacg
     1801 aaaacaccct gattccggta gagtttgact acgacaaagt cgaaagcctc tccaacgaag
     1861 tgcgagctaa attgatgcaa caccgccctg tctctatcgg gcaggcaagc cgcatttccg
     1921 gcatcacacc ggcagcgatt tccattctgt tggtgaattt gaagaagcaa ggaatgttga
     1981 aacggggtga gctgtaaata ctacaagcgg ttggttttgc agaaattttt gcaaaattga
     2041 ccgcttgtat tctttggaga aggaaatacc cgaactaccg ccgtattttt aatgatatat
     2101 ctgcgtaaac tcggtttttc gccgttcgat caccaaatgt ttgcccaacc ttcgtggtat
     2161 ttctgcaatg cacttgttca taccaattat gaaaatctgc gacaaggtgt atttgtgact
     2221 aaagcgtatt tagtgatgtt tcttgaaaat ttattgtttg aaaaaagtca ttcgttaagt
     2281 aatcgggcat tgcgtattaa tgaaaataat gattaaggaa tttgcaaaat gttagctaaa
     2341 ttaaaccgct tgcttgctca agccgaaata aatttgaccg atcaacaaaa agagcagtta
     2401 gttggttttg tgagattatt ggataaatgg aataaggcgt ataacctcac ttccgttcgc
     2461 aaccctgatg aaatgttggt taaacatatt ttggacagcc ttgttgttag tcgtcattta
     2521 caaggcgaaa cgtttattga tgtcggcacg gggccggggc taccgggcat tccgctggcg
     2581 attgctaacc ctgataaaca gttcgtgcta ctagacagct taggcaaacg catcactttt
     2641 atcaaaaatg cgttgcgtga gcttggtatt aaaaacgtta ccccagtgca aagtcgagtg
     2701 gaggaataca ctgaaagcca gtttgacggc gtattaagcc gagcctttgc ctcgcttaat
     2761 gatatgatcg actggtgtta tcatttaccg actgaaaacg gtaaatttta tgcattaaaa
     2821 ggcgtgtatg atgagcagga aataattgaa atcaaacaac cgattcagct agtggaagtg
     2881 attaagcttg aagtacctga gttggtagga gaacggcatt tagtagtgtt gaaaaagccc
     2941 taatacattg gaagtttaat gatacaagcg gtcgaatttg taaatttttt tgcaaatctg
     3001 cctgcttgtg ttaactattt ttcataaagc atacctggtt aataaggtgt gcttttttta
     3061 taacctatta tttcatctga tttatttcta ttttgtgatg tgcttcacaa aaacaaaaaa
     3121 acataatgta gtaaaaaata ttcgtaattg aagcccttat ttctttacct gaaaataagc
     3181 gaacttaatt atataacgag gaggttcgta atgaacaggg taacaaataa ggcagatgag
     3241 tttgctaaac tcagtacgtt tgaacgtatt gcttatggta gtggcgactt agcccaaaat
     3301 ttagtttttg gtacagttgg tggtttctta ctcacttact taactactgt aaacggcatt
     3361 tctgccgtag caggagcaac gattttctta attgtaaaat ggggaaatgt gttttgggat
     3421 ccgtttgtcg gtgcctttat tgacaaaagc aagccctcag cacagggtaa ataccgcccg
     3481 tatttactga aatttgggat tcctcttgtg gttttagctt cactactatt tcttcctctt
     3541 gaatcagtac gtggctcagt gatttatgct ttcctttctt attttgccac tgcgatggtt
     3601 tattcttttg ttaatattcc ttatggctcg ctttctgctt ctcttactcg agacacagac
     3661 gaaattgcta aattaaccac aacccgtatg acaatggcaa atatcgctaa tttgtttgtt
     3721 tataccttat tcccactttt tgtgcagtta cttgcaccac atgccgaatt aaaaaacacc
     3781 ggctttttcg gtattgagct ctatttaggt gattatatgt ctgctgctgc aggccctgct
     3841 tggtttaagg tttatgcggt ctatatggta attggatttg tggcgttaat gctctcttat
     3901 tttggtacta aagagcggat tattccaaca gcggaagaaa cagataaagt caagtattca
     3961 gatttagtta atgaactcaa acgcaatcgt ccattacaga ttttagggtt attcttctta
     4021 ataggtttta cttttatgtt cttcggaaat acggtgtggc ctttttacct aaaatataat
     4081 attgggcatt ctgagtggat tgcctccgtc ggtttattag gctctatccc tgggattttc
     4141 cttgtattct tatggccgaa actacgtcgc actatcggta aaaagaactt tttctatcta
     4201 tttttaggga ttttcgttct agggcaactt tgtctatggg tatggcaatt tgactccttc
     4261 aaatactctc caaccttagg ctatatcggt cgtttcttac aacaatgggg attaacttct
     4321 gctaccggtt ttatgtgggc gttagtgcct gaggttgtta cctttggaga gtttaagtcg
     4381 aaaaaacgtg tagcaggtat tattaatgcg ttaatgggct tgttctttaa aatcggcttg
     4441 gcgttaggcg gtattattcc gggttatatt aatgcggttt atggttttaa cggctcgctt
     4501 ttggctcaaa ccgaagaggc tttatttggt atcaatcttt caatgatttg ggctccaatt
     4561 attttagcga ttattgcagg atttgtgatg agtcgctatc cgttaagcga tactgatatt
     4621 gatcatatca acgaaaaaat tactgcttat tccaaataat ttgagtatag gagaatagat
     4681 tatgcaaatt caaaatccag ttttacccgg tttcaatcca gatccatcta ttgtgcgtgt
     4741 gggtgatact tactacattg caacttctac ttttgaatgg tttccgggag tgagaattca
     4801 cgaatcgaaa gatttagtgc attggaattt agttaaaaat gtcttagata caaccacgtt
     4861 gttagatatg cgaggcaatc cctcttcagg tggtatctgg gctcctgatc tttcttatgc
     4921 ggaaggtaaa ttttggttgg tttataccga tgtaaaaatt acagacggtg cattcaaaga
     4981 tatgactaac tatctaacta ctgccaaaga aattcaaggt ccttggtcag ctccgattaa
     5041 attgaatggt attgggtttg atgcttcgtt gtttcacgat gatgatgggc gaaaatattt
     5101 agtgcaacag acttgggatc accgtgaata tcatcacccc tttgacggta ttacgttaac
     5161 ggaatttgat gttgccacaa tgaaactcaa acctgaaacc cagcgtacga tttttgaagg
     5221 tacagaagtg aaattggtgg aaggtccaca tatttataaa attaatggcg aatattatct
     5281 gtttgcggcg gaaggcggca cagtatttac gcatcaagaa gtagtggctc gttctaaaac
     5341 attggaggct cactctttcc aactggctcc aaatacaccg tttattacta attttgatac
     5401 acctaattct tacctacaaa aacaagggca cggttcatta gttgataccc caagtggtga
     5461 atggtattac gcttccctca cagcaagacc ttggaatcat gcaacagaat ccgcaaccga
     5521 tcctcgtggt tggtcaacat tagggcgtga agccgccatt caaaaagtag aatttgatca
     5581 agacggctgg ccttatattg tgggtggaca cggtggaaaa acctttgtag aagccccaaa
     5641 agatgcaatt tttaccgaag ctcctattga tcattctcaa cacgatgagt ttgatagctc
     5701 aacgttagat attaactgga acacttaaga gtgcctttta gtaaagagat gggcgaagtt
     5761 ggtaatggtg ttttaaaatt gattgggcga ggctctcttg caaatacaca cgatttatcg
     5821 ctaatcgcac gccgttggca agccttctat tttgatgcgg aaaccaaagt gaaatttaca
     5881 ccgttttctt atcaatctat ggcaggttta actaactatt acaatcactc acactggtct
     5941 tggattttca tcaccaaaaa tgatcaagga caacaggtga ttgaagttgc agaaaataaa
     6001 ggtggactca gaaatgggca atatacttct taccttaaag ataaagcaat tgtcattcct
     6061 gatggaacgg agtatgtttg gtttaagact aaagttcgga aagaaactta ccgttatgaa
     6121 tattcattcg atggcaaaca atggcacact attccggttg aattagatgc ggcagtgctt
     6181 tcagatgatt atgtgttacg cagttatggc ggtttcttca caggagcttt tgtcgggctg
     6241 gctgcagtgg attactccag ttatgaatct acagcagaat ttagctactt tgactataaa
     6301 gagttaggcg ataagcaact tacagacggc tcattctctt gggaaaaatc tgaaagttgc
     6361 tttggctaaa atgaggagaa tatcacaatg aaacaacgca gatttggtaa aaccaacaaa
     6421 atggtgtcag aaattgggtt aggcacttgg cagcttggga cgaaatgggg tgaaccgttc
     6481 aatcatcaag aggcgatggc aattttagaa accgcttatg agcaaggcat caattttatt
     6541 gataccgctg atgtgtataa caacgggcaa agcgagaaag ccattggtga tattttgaaa
     6601 aaataccctg actttttcta tgtcgttacc aaatgtggac gtgcgttaaa cccgcatact
     6661 gctgaaatgt acacgccaca ggcaatcgaa aaatttgttg atggtagttt aagccatctt
     6721 ggcacggaaa agttggatat gattttgctc cactgcccgc caacgttggt ttatcgcaat
     6781 gatgagattt ttacgaaatt ggaacagctt aaagccggcg gaaaattaat agactacggt
     6841 gtgagtatcg aaacggcaga ggaaggcttg ttggcaatgg agtatgacat tgcggcaatg
     6901 gaagttatct tcaatatgtt ccgcttaaaa ccattggagc aactcttccc aaccgctcag
     6961 caaaaaaatg tgggtattat cgcccgtgta ctgttggcaa gtggtttgct tacaggcaga
     7021 tataatgcct gcacccaatt tggcaaagac gaccaccgca catttaaccg caatggtgaa
     7081 gccttcgata aaggcgaaac cttttcgggt gtggattatc aactcggttt acaagcggtg
     7141 gaagaattga aagccctatt cggcacggaa gatttaattc cttacgccct acgttgggta
     7201 ttgatgaatg aagctgtgag tacagtaatc ccgggagcaa gtaaggtttc acaagtaatt
     7261 actaacgcag cggtggataa tttccctcca ctcactgaaa atgaaatgca aaaagtggaa
     7321 gatatttaca accgcttaat tcgcccaagt gtgcatcatt tgtggtaatt tatccaacgc
     7381 tataaaaaat ggaactctaa cttgagttcc atttttgtca attttagcct taaacctcta
     7441 actgtttaga ggttttctta aacagagtca atgcaataaa cgcaaaggct aagaaacagg
     7501 aaaggatcag ggcatagaaa ccaccgtccc agccgaacat atcaaccagt ttacccatca
     7561 cataacctgc acttgcagag cctaacaagt agccgaataa accggttaaa cctgttgctg
     7621 taccggtggc aacacgaggc actaaatccg ctgcttgtaa accgatcatc atcaccggcc
     7681 cgtagattaa gaaaccaatc gccactaagc agatgttgtc gattaacggg ttgccggctg
     7741 ggtttttcca gtacaccaca atcgcaatta acacaccagc aaggaataac aacatcggcg
     7801 gcgcacggtg acctttgaat actttgtcgc ttaaataacc gcttgcaagc ataccgaaga
     7861 taccggcata ttcatacaag aagtacgccc agctctgttt atccacagag aaatgtttca
     7921 cttcttttaa gtaagtcggt gcccagtcga taatgccgta gcgaatgaaa tagacaaaca
     7981 cgttggcaat cgcaattgcc cacaggaatt tgttgtttaa aatatatttg tagaaaatgt
     8041 ctttggaaga gagtgtgtgg gcagactcca ctttttccac cactttctcg cctttgtact
     8101 catcaatcgg cggtaagcct tgagattccg gcgtatcacg catcaaatag aacatcacaa
     8161 acgccagtac aatcgcaatc aacgccggca gatagaacag ggattgccac acgccaaaaa
     8221 tagataagcc taaaatcgcc aacggcccga ttaaaccgcc gcccaagttg tgcgacacgt
     8281 tccaccagct ccaccacacg ccacgttcag aggttgagaa ccagttggtc atcgttttcg
     8341 cccccggcgg atagcccatt ccttggaacc agccgtttaa cgccgccaaa atgatcataa
     8401 ttggaataga cgaaagcacg cccggtacta aaccgaacac cagactcaca atcgctgaac
     8461 cgagcaagcc gatagtgata aagtatttcg ggttagaacg gtcggaaacg ttacccataa
     8521 taaatttact gaagccgtaa gcgagtgata atgccacgcc caccgtacct aagtctgctt
     8581 tggtgaagcc atattcatca atcaaatacg gcattgccaa cgagaagttt ttacgaatta
     8641 aataatatgc cgcatagccg ataaagacgc ctgcaaacac ttgccaacgt aatttgcgat
     8701 attccgcatc aactctgctg gcttccactt tttgttctgc tggtggagag gcttttagaa
     8761 aggaaaacat tttactactc ctttaagaat gaaatcctat ggctactata atctttcatt
     8821 tggagcagaa aaagtggatt tttgaaaatt tgtgagcaag attaaaatta ttttgagcga
     8881 aaacgaaaag cggttgaatt tccttctttt tttgcaaaaa atttgagaaa tctaaccgct
     8941 tgtttcactt aaaaatcagc tatttctgct ttttcaaaaa ttccacgccc gtatcaggga
     9001 agtcagtaaa gacgcctgtt gcacccgctt tattcagcag ggcatcgtac atttcatcga
     9061 cattttggaa aaagtccggc agagcatctt tgcgcacggt gtatgggtga agttccattt
     9121 tgtacttcgc caactctttc actaatggcg tgtaaacaat gttgccgact ttagattttt
     9181 ctttatccac caacatatac cagcccgggc cgacaccatc ggcatatttt gccacttctg
     9241 ccatcgcacc gtctttgaac atccagtcgt agtcgtaatt aacccagttg ccgtttttat
     9301 ctttctcttc ggtttcgtgc caatcggtgt aggcaactaa ctgcaccaat tttacgtcca
     9361 tacccagttt cggtagtaat tcggttttga tccgtttcag ctcgttgaaa tcgaaggttt
     9421 gcaggtaaat tggtgaggtt ttgctgtcgt agccatattt tttcaacact ttcagggttt
     9481 cgagtgcaat gtctttaccc tctttatggt gcaaccaagg ggctttaatt tcaggataga
     9541 tcccaatttt tttgccggtt gatttctcta atccttgaat aaattccagc tcttcttcca
     9601 aagtgtgaat ggtgaaatgg gactgccaca tcgggaagcg gttcgggtaa acttgtgcct
     9661 gcttgccgtc tttcacctca aaattctcgg tcatttcaag ggttttaatc tcatcaaggg
     9721 tgaaatccac cacataataa cgaccgtctg ctcgtttacg ctcagggaat tttttcgcca
     9781 catcagttaa accgtctaaa aagtggtcgt gaatcacaat caggcggtta tctttggtca
     9841 tagcaagatc ttgctctaaa tagtccgctt gttgcccgaa tgctagagct ttagattcaa
     9901 gcgtatgctc aggtaaataa ccgcttgcac cacggtgggc aatcactaat ttatcagatt
     9961 gttgtgcata ggcacccaat gctgtcgcgg acaatgctaa tgcagcaacc aatgttttga
    10021 atttaaattt catagaatta cctcatataa tgtaaaaata aaaggaagaa caaaaatgtc
    10081 cttccttttg ataagttatt tattatttac catagtgatc ttctaatttt gctttgtgct
    10141 tgccttcttc aaccatcaca atgaaggtta agagaatggc taatacacca ccaccgatca
    10201 tcacgtagaa accgccgtcc cagccaaatt tatctgctgc ccagccaact actgcagagg
    10261 ctgccactgt accacctaag taaccgaata aaccggtgaa acctgctgct gtacctgctg
    10321 cttttttcgg tgcaagttca agggcgtgta agccaatcaa cattaccggg ccgtagatta
    10381 agaaaccgat agtggtcatc caaatgaagt ccattaattg atatgggttt tcataccaag
    10441 catggcctgc atattgtgca atttcagatt ccggtgtcgc agggttgagc cagaacgcaa
    10501 ccactgctgc ggtggtaaga atcataaaga tgaaaccggt taaaccacgt ttgcctttga
    10561 acagtttgtc agagacccaa ccacagagta atgtacctgg aatcgcagct aattcataaa
    10621 tggtatatgc ccatgctgta cctttaatgt tgaagtgttt tacttcgcct aagtacaccg
    10681 gcgaccattt caatacgcca tagcggatta agtaaacgaa gacattcgca atggcaatgt
    10741 accataacag tttgtttttc agcacataag tcacgaaaat ctctttggtg cttaaatcgt
    10801 gttcataggt tttttcgtta tagtcgtcag ggtagtcgtt acgccatttt tcaactggcg
    10861 gtaaaccgca agattgtgga gtatctttca tcacaaggta gattggaata gctgcgatca
    10921 ttgctgcaat tcccgggaaa taaagggctt gttgccatac atcttttgcc gttgcttcta
    10981 caccatactc actgaaatag agcgcacttg ctaatagcac catcgccccc ggcaccatac
    11041 cgcctaagtt gtgagcggta ttccagatag aaacgatagt accacgctca gatttagacc
    11101 accagtgaac cattgttcgt ccacacggtg gccaacccat accttgaaac cagccgttta
    11161 agaagatcat tacccacatt actaaaatgc ttgatgttgc ccaaggcatt aagcccataa
    11221 gggtcataca tagacctgaa agtaacaatc cggtcggtaa aaatactttc gggttagagc
    11281 ggtcggacat tcctgccatc acgaattttg ataaaccgta ggccaggccg gcagctgtac
    11341 caatcacacc gagatcggtt tttgtataca taccagcttc aatcaagcct ttttgtgcta
    11401 agtcgaagtt tgcacgcaca aaatagtaag cggcatagcc gaagaaaatt cctgcaaaca
    11461 cttgccaacg caagaattta tatcttgcat cgactttgtc cgccggtaat tccgcaatgt
    11521 gcggagcggg tttaaatgga ccaaacatag tattctccaa tattacttag taaaacctct
    11581 gagtaattcc tttttaggaa attagggaag caataataaa tgaaaataaa aaatgacaaa
    11641 gttatttttt ataaaaatgt gattcatttc acaaaaaatt taccttaaac cacaaaaaat
    11701 gattgaaa
//
LOCUS       DANLXB010000076        11610 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLXB010000076 DANLXB010000000
VERSION     DANLXB010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11610
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(3..4463)
                     /gene="mukB"
                     /locus_tag="PXD41_001360"
     CDS             complement(3..4463)
                     /gene="mukB"
                     /locus_tag="PXD41_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL6288888.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(4639..5355)
                     /gene="mukE"
                     /locus_tag="PXD41_001361"
     CDS             complement(4639..5355)
                     /gene="mukE"
                     /locus_tag="PXD41_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL6288889.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5404..6747)
                     /gene="mukF"
                     /locus_tag="PXD41_001362"
     CDS             complement(5404..6747)
                     /gene="mukF"
                     /locus_tag="PXD41_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL6288890.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(7012..7899)
                     /gene="galU"
                     /locus_tag="PXD41_001363"
     CDS             complement(7012..7899)
                     /gene="galU"
                     /locus_tag="PXD41_001363"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL6288891.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8035..8220)
                     /gene="csrA"
                     /locus_tag="PXD41_001364"
     CDS             complement(8035..8220)
                     /gene="csrA"
                     /locus_tag="PXD41_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL6288892.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8310..10937)
                     /gene="alaS"
                     /locus_tag="PXD41_001365"
     CDS             complement(8310..10937)
                     /gene="alaS"
                     /locus_tag="PXD41_001365"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL6288893.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
     gene            complement(11132..11557)
                     /locus_tag="PXD41_001366"
     CDS             complement(11132..11557)
                     /locus_tag="PXD41_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6288894.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
BASE COUNT         3146 a         2696 c         2200 g         3568 t
ORIGIN      
        1 ttttatttag caaagccttt taaaccaaca acgtgaacat actcttggtt attggtgatt
       61 ttacgcacca atttataagt tgtgcctcgt tcagggctaa tattttcagg ggctgcaatt
      121 aataactgca tatccaaacg ttcgcagagt tcaaatagcg tattaattga ggtagcatct
      181 aatcgagccg cttcatctaa gaacaataag cgagccggta gaatatcttt ggcacgcata
      241 cggcgagctt cttcttccca gctttgaact accattaaga gaatcgacat acctgtaccg
      301 atcgcctcac cggtcgataa tgcactactt tctgcacgca tccagccgtc tgcaccacgg
      361 aaggtttcca cttctaaatc taagtagtta cggtaatcca ataactcttc accaatggtc
      421 tgtggtgtac gttgccccat ctcaatatga gggttcaccc gtttatacaa catcgctaag
      481 gcttcggaga agctcagttt ttggctgtcg aataaatctt tgtgttcctc acgattattg
      541 gataacgcat tgagtaaaat agcgtgcgta tctcggatat tcaccaccaa acgcacccct
      601 tttacctgac cgaatgcaat attttgtaaa ccttggttca gttgcaaaat gcgttgttgt
      661 tcacgctgaa tggttttacg taaaatattt gccacacttt ccgcactgat cgccagtttt
      721 ttctcacgac cggttaattc attggttaag cgtgaaagct cgatttccat ctgctcaatc
      781 gcatcaatcg gatcatcggt tttgataatg tcttggcgaa tccgctcacg caaatgctga
      841 taaaccgcaa taaagaacgc cactttgttt tccggcttgc gactatcttc agaagcccgc
      901 aagctatcac gcaggtattc attatccgcc acggcggtgc gtaatgcccc gagagcttta
      961 tccgaaatcg aacgtaattc ttcagccgat tgataagcca attcacggcg atttaaacgt
     1021 ttttccacat cgctgttacg agataaacgt tgcacaatac accagctggc ttttgcctgc
     1081 accaccaatt cacgttgtgt atgataatca cgttcggctt tacgtaaggt gcggttaagg
     1141 ttatccattt ccgcctcgat caccgcaatt tgtttatcta aataaccttt gcgggaacgt
     1201 tgctggctta aacgttgttg caattcatca cggcggaatc tggctcgctc ttccgctccg
     1261 ctatcaccac gcacgcccaa atcgtcaatt tcacgaatta actcttgtag catttggttt
     1321 ttcgcctcat aagaactgcg taagccggtc aatacttggt tatattgtga aagttgagct
     1381 tgagcttgac gcagctgatc acgagcctgt tcacgctcac gttgtgcatt ttccaaacgt
     1441 tggcgtagct gttcggttaa tgcagagcct tctgtaccca ccgtttcttg atagctaaaa
     1501 tggaggcggc gattcattac atcagccaag ctgaacactt tttgctgtaa cactttttgc
     1561 tcggcaactg aacggcggta atcggcttcc aactgttcaa ataaagccgg atcacttttt
     1621 aatgcggctg caatcggctc aagttggctt aatgttgctc caaattggcg gataaacatt
     1681 tcatcttctt ctgccaattc taattgctca cgacattcct ccgctcgtgc ttccagcgtt
     1741 tcatcggcta ataaattcgc aagcggtaga attttattca acatttgcaa ctgggctttt
     1801 acgctttcta attggtgacg taattgctgt tcgttaccgg ctgattgtgc caattcacgt
     1861 tcaatttctg cccgttctgc cgcaatctct tgcattaaca tttcagggtt ttcttggaac
     1921 gctaaattta agtgcgtgcc gataaattgg cttaagtgtt gatgtaaacg ctggcatttc
     1981 tgcacatcaa aggcacgttc agcgtgtttt tctgcggttt catcacgctc tgcttttaaa
     2041 gtcgctaaat gtttttcacg agcagcacgt ccgaataacg gcacttcagg gaatttagaa
     2101 taacgccatt ggcgatcgga gactttcacc accacgcctt cgcctaattc ctcggcacta
     2161 aataccgcat cgtcaaaggc ggacggatca ccttcaatta aataaagatc acttgggcaa
     2221 tcgtctaatt tctctagctg tgttttaacc gcctctaaat cacgcactac aatagcgtgg
     2281 cgagcctcgc cgtataaggc ggagaaataa ggcgcatctt caattgatac atcatcatat
     2341 aactcagaga gtaacactcc accaaaacgt tctgccaact ggtttaagcg ggcgtcttcc
     2401 gagccgtccg gctggcttaa gcgattaatt tgctcatcaa gcatttgttc tttacgagcc
     2461 aattcatcac gagcaagggt ggcttcacgc tctttgctca gcatattttg cataaactgc
     2521 atcactgatt ggctggcttc aaacttctcg ccacattgct cttctaaacg agtcagagcc
     2581 gattgtgccg tatgccaagc cggtgcattc ttcgctaatt gctgatattg ttgattaagc
     2641 tgttcacgtt gttggcgttg ggttgaacgt tgttctacaa agtccgaaag ctctgcctct
     2701 aaatcttcta ggcgagcttg ctgctcttca aaataggcgt ctaattcttc cgctgaattg
     2761 agttgttgtt gcgatttttg gttaaattcc gccactaaac gctgggcatt ttgctgttgt
     2821 tgcaaacgct gttctaaatc gttgagtttt tgacgtaaac tcaccgcttg ctgagcttgc
     2881 attttttgct cagggaaggc agaaagtaac gcacgagcct cttcccacgc ttgcaagcgg
     2941 tcaatttcac cggaaatttt gcaaaccaat tcaaacgctt tttcaaattg ggttttcgcc
     3001 atatccgaca cgcttaaacg ttgttccagc tcaaatactt gatcggtaag atcttcggct
     3061 tgagccacaa attctgcgtg gtaatcttca atattattta aatctaaatt cactaagccg
     3121 gttagctgtt tggctttttc taacgcattc accgcttgtt ggtattgcaa tgcacgagtt
     3181 tgctgtgcat ctaaggcttg ttggtaatcc gccatttgag aacgcaattc ttcaacgtga
     3241 tcatctgcct catccgcacg agcctgagca ttttcggcaa tttccgcaat ttcttccaat
     3301 gcctcttgct gttcttccag cttaatattc agctcttcaa cttcgtcttg gtagcgttcg
     3361 attttctctt ggtggcgtaa cgcattcatc actaaattta gatgatcgtt cgcactattg
     3421 taatccgcct ctaacgccag ctctgcttcg gcaatatccg cactttcacg gctaaattcc
     3481 acaaagcgtt gctgttcgag caaaattttg gattttgccg cataccactc tttgcgttgc
     3541 tctaaggctt gttgtacatt gccacggcgt tcattcgcat tacgcatata atccgccgac
     3601 acataattgg tcgattcggt aattaagcgt ttgaacatat cccgatccga ttgcgtgacc
     3661 ttaatcgcct ctaaggtcat acggttttca cgcagagcgg attccatatc ttggaacgct
     3721 tggcgaacgc ccgtattttc cggcaacaag taatcacgca aggatttggt aatcacactt
     3781 gaaataccac cataaagcga ggcttcgatt aatttgtaga atttgctacg gtcggctgcc
     3841 gaacgaaggc gttttgggat tacgcccaaa tcgaacataa aactgtggta atcagtaatc
     3901 gaatggtact gtttgaattg gacttcgctg ttctcaaatt gatctttgag ttcatttaac
     3961 gccagcactc gagccttatt ccccacttgt tcggtcagta ggctgataat gctttgctct
     4021 tgaggaatat tctggagcga gaacgaacga atatcgactt ttttatcccg tccgacaatt
     4081 tgttgcaaac gcacgccggt aataatccgt tgcccacggg aattgaatga ctctaacacc
     4141 gcatagcaaa cacccgcttt taacttaccg tataagcctt tatcacgaga accggcggtt
     4201 gagcctgctt cagtcgtatt acggaaatta agcaaggtta aatctgggat caaggcggtc
     4261 acaaaccctg ccattgtggt ggacttacct gccccgttac cgcctgaaag cgtggtcact
     4321 aagtcatcta aatcaaaggt tcgagcaaaa aaaccgttcc agttaatcag cgttaaagag
     4381 agaaatttac cgcgttgtac atcattcggg cgtgcaagcg gtgcaatttg aggattattt
     4441 tgcaattctg tggtatcaat cattatgttt tctcactaat tgtcctagca cgctaaagcg
     4501 tactaggtta ggtataggtg agtagctccg ctactctaat cgcaacctca gccttggagg
     4561 gctgctttat gcttaaccta gttcggcttt accgtgtcta gggcagactc attaaatgct
     4621 gaatctattc gaatgaaatc actcattttc tccgtcaaag ggggcttcat ctgcaatatt
     4681 ttcatctatt tcaaccgctt gttcgtttaa caacgcaggg gttgtcgctt caccatcacg
     4741 aattaagcga agctgtgcct ctcttgggtc atcaccggta cgcacatcag ccccaaaacg
     4801 gaagaccgat tctgaaatca caaatttttt gctgttttgc tcgcctactc gggtaataat
     4861 gccgatacgg gctaatctgc gtaacgctcc gccggctttt tctgccagct tggcacggtc
     4921 taaatcggaa ccggtcgaac gtgggtttac cgcttttaat aatttgcttt catcggcaag
     4981 actgagtaat tcttcataca catcatcttg gctgaaaatc ccctgctgag ccaaacgttc
     5041 cggacttaaa tagaggtagc acaacacctt acccactaac atttccattt ctgacattgc
     5101 cgaacgggca attagtgtcg aggctttcgg gcgtaggtag aaaaagcctt ccggtgctcg
     5161 aatcaactca acgtgataac ggcggtaaaa actctctagt tccgcttgaa aatccatcaa
     5221 aaagacgtgt tggtcaagct gctcggtatt gatatggcga ccggctcgta attggctgtc
     5281 tagctccgga aaaatcgggt tggcaatcgc aagtgccagt ttcggggaaa tgaaatcttg
     5341 gatattctct gtcattgtca ttctcttcaa ttttgcaaaa ttctgggtaa aaacgaccgc
     5401 ttgttattta ttgtattggt cgataacatt cgcctgcact tccgcccctt gctcgttaat
     5461 cggctgccat tgtgggtaaa cggcttggct atcttggctt gccataccta acttaacagc
     5521 ttgatcgaca ataatacgag ccacgtcaaa atggcgggat tccgggaatc gggcaagctg
     5581 ttcacgcaag ataacgccta aatctatcgg tttaccttca gcacggaacg gcgctaaatg
     5641 agcttgcatt gccgaaacaa tttgctcttg cacatctgaa agcgactcat actctaactc
     5701 acttggcaac tcgcccaccg attctgcctc atttaacatt gcttcatcat cacgcaagtc
     5761 cagtaacgaa tcggcttttg cagtataaag caaccaaggg ctgttgtaat aatcttgaat
     5821 cgattggcgt aaccgttgcc cgaatacacg gtttttgtcc atatcaatcg ctgtacgaat
     5881 aaatttatgc acatggcggt catagccgat ccaaagatcg atagcttgtt gtccccagct
     5941 gataatacgg tctaacttat tttgtagatt cacaatcagc tgatcgataa aatccaaatc
     6001 attacgagcc atcaggcaac tttgaatccg caataattga gcttgcagtt tatcaccagc
     6061 ggcatttaag gtatcttgca actcacgcaa attccccgag gtttcgtcta acaattgctc
     6121 acaactcata attgcttcgt gccagttttg gctaagcagt tcggctattc gttcacggat
     6181 ttggtgctga ttttcgtcca taatccgttg tgaaagatcg atgctgtcaa agatttccgc
     6241 caccgaatat ttcaatgggg caaacacatt atttcgccaa aaacgttcat cttgtgcctg
     6301 ctctattccc tcttccgctg ctactgaagc tcgctgaatt tcatctgcca caatcgaaag
     6361 ttgaatcgat aaacgcaggg tagaaaattc ccgctggcga acgtaataat ttgaaattcc
     6421 cacccctaac ggcgtaacac gataaatcgc caaaccttcc gtaaattcgc tactaaaacg
     6481 gtttaacaac cgttgtctga ctaaatcatt aatcgcatta ttggcacgct gggtaaaagt
     6541 ggcatcagat tgctcaaacg aatttgaaac ataacggaaa agatcaataa gatcactttc
     6601 taacaattca ccatctgtct gttcttggtt ataaatagag atagcaagta gaaacgctaa
     6661 gcggtcggaa gaaagcgaaa gtgaaaattc acgatctttc gtccaagaga tgagttctgg
     6721 aatagtctgt gccaattcgt tctgcatacg ggcttaatct ttaatttcta tacaaaaatg
     6781 gtatttattg taactgaatg taatcaaaat gggaatggat aaaacgcaga caagagaaat
     6841 gaacaatata agcggtcaaa tatgggtgat tttttgcaaa aagtatttta aaggtaaatg
     6901 aatccgaaaa tttattatca ctacgctaat ttatgatacc ataaatagaa aagactggat
     6961 ccaatagaat atcagacaca gccccttaga tcatagtcta aactctaagg cttagagtga
     7021 tttagctaac tctttaataa atgctttaaa ttcttttccg catttgtcat gatttaaact
     7081 atattctaca aatgctttca tatagccgac tttataacca caatcaaatg agcgccctgt
     7141 catatgaaaa gcttcaaccg tttcttggtg aatcaacata tcaattgcat ccgtcagctg
     7201 gatttcatca cctacgccta ctggcgtttt ttctaataaa ttccaaatat ttgaggaaaa
     7261 tacataacgt cctactaccg ctaaattaga aggcgcctct tcaatacttg gtttttcaac
     7321 cattttcgca ataggcgctg cccccccgag agggatatct acaccatggc agtcagcaac
     7381 cccatagcta cttacatttt ccattggaac cggcgcaacc ataatttggc tatatccggt
     7441 ttcttggaaa cgcttcacca tcgcagctaa attttccgtt ttttggtttg ctgtaaattc
     7501 accaagtaat acatctggta atacaaccgc aaacggttca tcgccaacca ctgttcgtcc
     7561 acatagaacc gcatgaccta aacctttggc ttgcccttgg cgaacgtgaa ttaaggtaac
     7621 atcttttggt acaatagaac gtacatcatc taataattga cgttttactc gtttctccag
     7681 catcgtttcc aattcaaaag aggtatcaaa atggttttcg atagcattct ttgaagagtg
     7741 agtaaccaat acaatttctt taaaacctgc agccacacat tcatttacaa tgtattgaat
     7801 aagaggttta tctgcaagga taagcatttc ttttggaata gctttggttg cgggtaacat
     7861 gcgcgttccc aatccagcaa caggaataat gactttcatt tggaatcctt tgatgactta
     7921 acatattaga tataactgaa ataaaccgct tagacataac aggcggtcaa ttttcagaaa
     7981 attttgcatt gcctgcttcg ctgttatcat ctagcagctt tacagttaaa atgcttattc
     8041 cgcattttcc tcttctactg aggcttttat tctttcataa atctctcggc ggtgtacaga
     8101 gatttctttt ggtgcattca cacctaattt aacttgattt cctcggatgc tgagtaccgt
     8161 aatctcaaca tcatctccta cgagtaaaac ttccccaatc ttacgagtta gaataagcat
     8221 aattgtctcc taaaaagtga aaaactctat aaatacttaa atatagagta aagttttaaa
     8281 ggcgagttca gctcgccttg ttattatttt taaagttttg ctgtaatcca ttcttgagca
     8341 agtgacaatg cttgcaataa atgttgtggt tctgagcctc cggccattgc catatcagga
     8401 cgtccgcccc ctttacctcc cactttttca gccattgcac caactaattg accagcattg
     8461 actttatcgg ttaaatcttt ggtcacacct acaatcaaat tgactttatc ttccgccgta
     8521 gtcgcaaata caacaactgc actgcctaat tgatttttta ggtcatcaac catcgttctc
     8581 aatgcttttg gttcaacatt ctctaattgt tgaatcacta cattcacgcc attgatttgg
     8641 gtagcttgtt tggctaaatc tgaacctgct tgtgctgcaa gtttatcttt tagctgttga
     8701 agctcttttt ctgtacgttt agccttctct tgtaattgaa caattttctc aacgaatgaa
     8761 tgactgtctg cttttaacaa ttcagcactt tgttgaacgg cttgttgtaa ggtatgcaac
     8821 caagcaatcg cattttcacc agtgacagcc tctatacggc gtacacctgc tgctaccgca
     8881 ccttcagagg taattttgaa taagccaata tcaccggttt gtttaacgtg tgtgccgcca
     8941 caaagttcaa tcgagaaatc tgacatttcc actacacgca ctacttcgcc atatttttca
     9001 ccaaataacg ccattgcacc tttcgctttt gcagattcaa tatccatttc ttcaatgatt
     9061 acctgaatat tttcacgcac tttagcattc acgatacgtt caacttcttc aagttgtgat
     9121 ttagtaattg cttccggctg agaaatatca aaacgtaaaa tattttctga cactaatgag
     9181 cctttttgag caacgtggtc gcctagcact tggcgtaacg cagaatgcag taagtgggta
     9241 gcactgtggt ttaatgtaat agcatgacga cgctctctat ctacgatcgt attaactttg
     9301 tcgccaacag aaagtgagcc ggaagttaat tgcccaatat gcccgaatac ttgaccatat
     9361 ttttgcgtat ctactacctc aaaattgcaa atttctgcgg aaatttgacc gctatctccc
     9421 acttgtccgc ccatttctgc atagaatggg gttttatcta aaatcactac cgcattttca
     9481 cccgattgaa tagactcaac cgattttcca ttactaaata acccaattac agtagcatca
     9541 tttaagctgg tttcagtata tccactaaag catgttttac tgtccacttt aatcacattg
     9601 ttataatctg tgccaaagct actgctggct ttcgcacgct cacgttgtgc ggtcatttct
     9661 gcattgaagc cgtcttcgtc aattttaata tcacgttcac ggcaaacatc tgcggttaaa
     9721 tctaacggga agccataagt atcataaagt ttgaacgcaa cttcgccaga taaggtgtta
     9781 ttttcaacct tcgctaatgc ttcttctaat aaattcaatc cacgctcaag agtacgggca
     9841 aattgctctt cttctgcttt gagtgtcttt tgaatatgcg cttgtttttg ggtcagcacc
     9901 tcaccagctt gccccattac cgttgcaagt gttggcacca atttatagaa aaaggcttct
     9961 tttgcaccca aaatattacc gtgacgaacc gcccggcgga taatacggcg taatacatag
    10021 cctcttcctt catttgaagg taaaacacca tcggcaatca gataggaaca agcacgaata
    10081 tggtctgcca ctacacgtaa agatttatta tctaaatctt tcacattaag caaagtagcg
    10141 acttctttaa ttaaagtttg gaaaatatcc gtttcgtagt tggagtttac gtgttgcatt
    10201 accgcagtca tacgttctaa ccccatccct gtatctacag aaggcttagg cagtttttcc
    10261 atcgtaccgt ctgctaaacg attgaactgc ataaatacaa tattccatac ctcaatatag
    10321 cggtcgccat cttcttctgg gctacccggt aagccacccc aatgttcagg cccgtgatca
    10381 tagaaaatct cggtacaagg gccacaaggg ccggtatcgc ccatcgccca gaagttatct
    10441 gaagcataag gtgcgccttt attatcgcca atgcgaataa tatgttccga tggtacacct
    10501 acttctttat gccaaatatc gtaggcttca tcatcagttt catacacagt tacatataat
    10561 ttttcttttg gtaagccaag ccattgtgga gaagttaaaa actcccaacc gaatttgatt
    10621 gcatcttgct tgaagtaatc accaaagctg aaattcccca tcatttcaaa aaaagtatga
    10681 tggcgagcgg tataacctac gttttctaaa tcattgtgtt taccacctgc acgtacacaa
    10741 cgttgtgccg tagtcgctct gctataaggg cgtttttcta acccaagaaa aacatctttg
    10801 aattggttca tgcccgcatt ggtaaataat aatgtcggat cattctcggg aacaagagag
    10861 ctgcttggaa caatcgtatg tcctttagtt tggaaaaact ctagaaaaga ttgtctgata
    10921 tctgaagttg ttttcattaa aaatcactct ttttgtaaat agaagttaaa catttagtta
    10981 tcttgctatt ttacacattt tttatgctat tgggggagct atatgctact tattttttca
    11041 attaaataat ttttgtaaat tttcccaaaa aaataaccgc ttgtaagaca gataaactgt
    11101 ctcaagcggt tatttttcat tcactttctt gctattcatc tgctaatggc acaaccagca
    11161 tatcaacagt gatattattc atgactcgac gagttgaaga cataaattta ctccagaagt
    11221 cctgatgatg gccagtgatg agtaaatcga cattgtgttt ttctacggcc tcttccaaaa
    11281 cttgactaaa atctcccgtt ccgtttaaac attcagatac aggataattt acttttgagg
    11341 caagttcagc cagtgccgta tttgtttctt caacaacact gtattgtacc gaagacatat
    11401 taatatcaat taatcctgta tagagatccg aaaaattaac atcaacgtga atgagggaaa
    11461 gtttagctcc gcatttttct gctaacgcag cccccttacg cactaaaaca agactttctt
    11521 cagaaagatc cactgcaact aagatatgtt tatacataat atgctccttg cttgtgagag
    11581 ttgtttactt tgtgtataaa catactaaca
//
LOCUS       DANLXB010000077        11400 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.078, whole genome shotgun sequence.
ACCESSION   DANLXB010000077 DANLXB010000000
VERSION     DANLXB010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11400
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            9..1985
                     /locus_tag="PXD41_001367"
     CDS             9..1985
                     /locus_tag="PXD41_001367"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL6288895.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            2077..2877
                     /gene="apaH"
                     /locus_tag="PXD41_001368"
     CDS             2077..2877
                     /gene="apaH"
                     /locus_tag="PXD41_001368"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL6288896.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            2941..3017
                     /locus_tag="PXD41_001369"
     tRNA            2941..3017
                     /locus_tag="PXD41_001369"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2975..2977,aa:Val,seq:gac)
     gene            3245..4243
                     /locus_tag="PXD41_001370"
     CDS             3245..4243
                     /locus_tag="PXD41_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6288897.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            4521..4703
                     /locus_tag="PXD41_001371"
     CDS             4521..4703
                     /locus_tag="PXD41_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL6288898.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(4973..5263)
                     /locus_tag="PXD41_001372"
     CDS             complement(4973..5263)
                     /locus_tag="PXD41_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288899.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(5238..5507)
                     /locus_tag="PXD41_001373"
     CDS             complement(5238..5507)
                     /locus_tag="PXD41_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288900.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ"
     gene            complement(5497..5829)
                     /locus_tag="PXD41_001374"
     CDS             complement(5497..5829)
                     /locus_tag="PXD41_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288901.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            complement(5840..6292)
                     /gene="ssb"
                     /locus_tag="PXD41_001375"
     CDS             complement(5840..6292)
                     /gene="ssb"
                     /locus_tag="PXD41_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6288902.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            complement(6292..6624)
                     /locus_tag="PXD41_001376"
     CDS             complement(6292..6624)
                     /locus_tag="PXD41_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288903.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            complement(6637..8997)
                     /locus_tag="PXD41_001377"
     CDS             complement(6637..8997)
                     /locus_tag="PXD41_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL6288904.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            complement(8994..9326)
                     /locus_tag="PXD41_001378"
     CDS             complement(8994..9326)
                     /locus_tag="PXD41_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288905.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            complement(9323..9565)
                     /locus_tag="PXD41_001379"
     CDS             complement(9323..9565)
                     /locus_tag="PXD41_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288906.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            complement(9717..10010)
                     /locus_tag="PXD41_001380"
     CDS             complement(9717..10010)
                     /locus_tag="PXD41_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288907.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            complement(10023..10355)
                     /locus_tag="PXD41_001381"
     CDS             complement(10023..10355)
                     /locus_tag="PXD41_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288908.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            complement(10438..10710)
                     /locus_tag="PXD41_001382"
     CDS             complement(10438..10710)
                     /locus_tag="PXD41_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288909.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            10843..11088
                     /locus_tag="PXD41_001383"
     CDS             10843..11088
                     /locus_tag="PXD41_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288910.1"
                     /translation="MNTEDQIIELTVEVENLRHQLNAKNIILDDLKGRLTDYQRKRLD
                     RLFERSRRQYLNDLDLEEEQAEALEAICNELESFLAN"
     gene            complement(11187..11399)
                     /locus_tag="PXD41_001384"
     CDS             complement(11187..11399)
                     /locus_tag="PXD41_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6288911.1"
                     /translation="MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYL
                     LKIEAATNGQVTIREICEELGNATAK"
BASE COUNT         3335 a         2640 c         2029 g         3396 t
ORIGIN      
        1 gagaaattat gtttcaaaac aatccccttt tagcccaact caaacaacaa attgaagcaa
       61 gcaaagaata tgtcgcaggc gttgtcaaag cctcagacaa agcattcggt tttttagaat
      121 gcgataaaaa aagctatttt attccacctg cggaaatgaa aaaagtaatg cacggtgatt
      181 cagtgaaagc cgtagtcaaa cgtgatggcg acaaagaaca ggtagaaatt gattcactac
      241 ttgagccaat gctggataga tttattgccc aagttcgctt gaataaagag ggcaaattgc
      301 aacttgcggt tgatcaccca agcattaagc aaactatccc ggcaaatacc cataaaaaag
      361 ccactgaaaa attagaaaat ggcgactggg tggttgcaca attaaaaacg cacccattgc
      421 gtgacgaccg ttttttcttt gctcaagtta cccaatttat ctgtaaagaa tctgataatt
      481 ttgccccttg gtgggtcaca cttgcccgcc acgaacagcc tcgtgaaccg gtcgcaaatg
      541 aaaaaaacta tgaattacac gatgaattag ctcgtgaaga tttatctcat ctttacttta
      601 ccactattga cagcccaagc acgcaagata tggacgatgc tctgttcatc gaaccaatta
      661 agcaaaatgg caagcgaacc ggctggcgtt tagtggtagc gattgctgac ccaaccgctt
      721 atatcccaga aaattcccat attgaaaaag ccgctcgcca gcgttgtttc accaactatt
      781 tgccgggctt taacattcca atgttacctc gagaactctc agacgatctc tgttcgcttg
      841 tcccgaatga aaaacgccct gccctcgttg gctttattga aaccgattta aacggcaatc
      901 tcattaaaga gacaaccttt acctctgctt gggtcgaatc aaaagatcgc ttggcttacg
      961 acgatgtttc cgattatctc gaaggcgtgg aaaatgcgtg gcaacctcag tctgaagaaa
     1021 caaaacaaca aattgagtgg ctacatcaat ttactcaagc ccgcattcaa tggcgtgccg
     1081 agaatgcgtt gctattcaaa gaacaaggcg attatacctt tgagttaaat gaagatggct
     1141 cggtaaaaga tattcacgtt gaatatcgcc gtattgcgaa tcaaatgatc gaagaatcaa
     1201 tgattcttgc caatatttgt tgtgcaaaat tcttaagcca acatgccaaa accggtgtat
     1261 ttaataccca ttcaggtttt gatccgaaaa attatgaatt ggtaaaatca tttttactcc
     1321 aaactttagc cagcgatgaa aatcgtgatg agcttgccga acgctactcc gccgagcgtt
     1381 tagcaacctt agaaggctat tgccaaatgc aacgtgatat tcaagactac ccagagaaat
     1441 tcttagagtt gcgtttacga cgttatttaa ccttcgctga atttaaagcc gaagttgccc
     1501 cgcatttcgg actaggcatt accgattacg ccacttggac atcacccatc cgtaaatatg
     1561 gcgatatggt aaaccaccgt ttaatcaagc aagtgttact tggcaaacaa agccaagcgg
     1621 tggaagaatc agttttaagc cgtttacaag aagctcgccg tcaaaaccgt ttagtagaac
     1681 gtgatattgc tgactggctt tatgctcgtt accttgcccc aatggtggaa caagcggtcg
     1741 aatttgagtg cgaaattgca gatgtttccc gtggtggctt gcgtgcgaaa gtcataaaaa
     1801 acggtgctca aatttttgtg ccattctcca gcttgcacga caacaaagag gaaatggaat
     1861 accgccaaga agaacttgca ctttatatta aaggtgaaaa agcctatcag atcgggcaag
     1921 cggtgaaagt gaaactcacc gaagtacgct tagaaacccg ctcaatcgta ggaaatatca
     1981 tttaaatttc aagcggttat attttgatga gattttgcaa attttctcta aaatataacc
     2041 gcttgtttat aactttaggg gaacaaagga gaaacaatgg caacttatat tgtaggcgac
     2101 ctacacggtt gctttaacga atttcagctt ttattagaaa aagtcaatta taaccccaag
     2161 caagacgaac tctttttaac aggggattta gtcgcccgtg gtgaggactc tttagcctgt
     2221 ttacgttttg tgaaagactc tgcaaacaat gccaaaaccg tgctaggcaa ccacgatttg
     2281 cacttgcttg gcatcaaacg ggtaaaacca aatgataaga ttgatgctat ttttgaggct
     2341 aaagatcggc tcgatttgca aaattggctc agaaatcaac cgcttgtaat tcatcacccc
     2401 aaacatcaat ttttgctgac tcacgcagga atcagccctg agtgggattt agcaactacc
     2461 ctagcttgtg ccaaagaggc agaaaaggtg ctacaaagtg acaattatgc ggactacatc
     2521 gcccaaatgt atgagaataa gcccgaacgc tggagtgaag atttgcaagg tgttgaacgt
     2581 tggcgttata tcatcaatgt gtttacccgt atgcggtttt gctacaccga caagcggtta
     2641 gattttgact gtaaattacc gcttgaacaa gcccctcaag aactgctggc ttggtttgac
     2701 ttagataatc cgttatttac acagaaaaac attatctttg gtcactgggc aagcctaatg
     2761 ggcaaatgca ctcgtccaaa catctatgca cttgataccg gctgtgcttg gggaagccat
     2821 ttaaccatgc tccgttggga agataaacaa atttttaccc aaaagcgtct aaaataaaag
     2881 cattcgacca aaagcatatt gcactaagtt cctttttcca atagaatgca caccgttaat
     2941 gcgactatag ctcagttggt tagagcacca ccttgacatg gtgggggtca ctggttcgag
     3001 tccagctagt cgcaccatta tttttaagcc tgaatatccc cattcaggct taaccccaaa
     3061 aatacccctt ataaatcaat agcttattga tttaaaacac ttccccaagt gtagcataac
     3121 atcaataaaa acatcatttt tgatatgaaa acttgatatt tattgatcgt ttatgatctc
     3181 tattaacatt cctttgcaca catttgcaca cttaaactgc acacatacac aaaggaataa
     3241 aaaaatggct actattatta agaacggcaa caaataccga gcacaagtcc gcaaaaaagg
     3301 catttataaa actgccactt tcagcaccaa aacagaggca aaccgctggg cttacgcttt
     3361 agaggctcaa attgatgccg gagaatataa caccaccccg aacattcttt ttgccgaatt
     3421 aatcgacaaa tacctcaaag aggtcactcc gaccaaacgt ggcaaaaggg aagaacgcta
     3481 tcgcctgcta agaattgccg gcagcaactt gggaaatata ccattaccgg cactcaccaa
     3541 agagcattta cgccaatggc aaaaccaacg cttgcaagaa gtgcagccgg tttccgtctc
     3601 aagagaaaga gccactttat cggcactctt tacaaaagca atggaatggg attatctcaa
     3661 agaaaatcct ctaaaaacgc tggaaaaaat caaaacgcca ccagcaagaa ctcgccgata
     3721 tagcgatgag gagatagaca aactgatttt tgtctccggc tacagcccta accagccacc
     3781 gctattaatg caacaaagag ccggagcagc actattattt gcgattgaga ctgcaatgcg
     3841 agcgggtgaa attgctggtt taaaatggga acatataaac ctgcaggcac gcaccgcatt
     3901 tttgccacaa accaaaaacg gttattcacg caccgtgcca ctctcaacca aagcaatagc
     3961 aattttaaat cagttggcac aacttgaacc gaacaagcaa aacagtgttt tccagctcac
     4021 cagtcgcagc cttgattcga attttcgcaa gctgaaacaa aaagccaatc tacacaatgc
     4081 cgatctgcat tttcacgaca cacggcgaga ggcactcaca cgtttgtcta aatatctgac
     4141 ggtaatggag cttgccaaag tatcggggca tcgagattta agtattttgc aaaataccta
     4201 ctataacccg gatatttcag aacttgtgag caaactgcaa taaaaacaaa agccgataaa
     4261 cgaaaattta tcggcttttt tgtatttatt acttgcaatg taggataccc tacattataa
     4321 taacctcact ttcaagagac agcttgaaag tgagcgtaag gcttaaacct tacgaaatga
     4381 agaaggatag cacaatgttt aaatacatta tcctagttgt cttcttatta gtccttagct
     4441 ccccagctta ctaatctgaa gcaactcgct gggggtgaaa gctcccagct cttcaacaaa
     4501 atttataata gggataaatt atggcaatgt caagaaatga aatccaagct aaaagcgagg
     4561 caaaacgagg aataaagcaa aaatccttta aactaccgct tgaggtgatc gcagaaatcg
     4621 aagtacttag ccaaaaactc aacattccac aaaaccagct gattattcaa gctattcaac
     4681 aattcaagca aaacaaccca taaaacaaaa gccgataaat aatgaaattt atcggctttt
     4741 gtattttgaa atactttaca aataatcgtt attatccatc tttacaaatg ccagccaatg
     4801 cgttttgtta tgtttaccgc ttttatgccc atagataggt tggtattcga taacatttaa
     4861 aattttcgat acagggattc ccgattgtca gcaaacaata ccgaggggtt gtgcttatta
     4921 aagtgaaaca ttcggctacc gcaacaagca tctaaaatta tcttttttat catcacttca
     4981 ccttccacat caaacaaaat ttcaccactt caccggatac ccacttcttc gcccccctgc
     5041 ccttgcctcg taagccgtca agggcaatcg gtttcggaaa atgtggacta gatacaacac
     5101 ttcggctggt gtgttcttta gtgtagccga aatatgctgc tacatcgccc aaatcccaca
     5161 attcacggct atgctcattc acccctttgg tttttaataa ccgctcaacc tcacaaagtt
     5221 ttgcaaaaac ttgctcatta ctgaccgctt gtaattgttc catttttacc acctaaatca
     5281 tcaatccaaa catctacagg catttctttt tgttctaaca ctggcttaac tttcacatca
     5341 atttccaaat catactgact aaacccccgt aacccacttt cctcaaattt aaaaagatta
     5401 aaaatatgat aagcaaccac atcctgcaca agctcaatat cttctttttt ccgctgtgga
     5461 tgctcaactc tgactcgtat aaatttactc cccattttat ttttcattta atttccctcc
     5521 cagcaccgca taacccgcaa tatctcgcca gttatcttca tagtccggat tacaacctgc
     5581 aaaaatgcga gccagtttca agcagatcat ctcgcctgcc tctttttgat gtggtttaag
     5641 ttgagtattg gtatccagca acactgcttt taactgctgg ctcattgtgg caacatcatc
     5701 aaagttgccg taatttttgc cacgttctcc gattatttgt tctatgttta catttttcac
     5761 ttcaaatttt cctgtaggtc ttatatgtaa atttgcacta aatggcattt gtttttccca
     5821 ttctctcatt attcaccccc taaaacggaa tatcatcatc aaactgcgga atatctttct
     5881 gctcgtccgc agtcatcacg tcttgatttt tctgctttgg ttgcggttta ttttctgcct
     5941 tatttggcgt atttggcgta tttttctcac cactactgag catttgcatc tgctcggcaa
     6001 taatctctgt aatactccgc tcaacaccgt tgctatccgt ccattttcgg gttttaattt
     6061 tcccgataat tgataccaaa tgcccttttt ttacatacaa ttcggcgatt tcagctaatc
     6121 ggcgataaag caccacccta tgccattcgg tgctttcttt cttcacacct gtttgcttat
     6181 ctgtccactt ttcagaggtc gctaccgata aagccgcagc tttctcacca ttttgcattg
     6241 ttctaatatc agggtcttgc cccaaacgtc cgactaatgt gactaagttc attatttcgc
     6301 ctccaataat cctaacttca tttcaatttc gtctaaagtt tccaagacat atacatagtt
     6361 atcccttgct ctacaataat tcttctttac atcaaaaaga tagttctcaa aatatttacg
     6421 tccttcttca tttaaaatca gaaccgaacc attccaatct tcaaatccat aatcatcagc
     6481 tggtatctct ccctctcgaa atccttcaat aaacttagtt tgaataatct catcataacg
     6541 aaacgctctg caacgcaccg gttctccata ttcatctttc tcaatgaaat aattaatcaa
     6601 atttaaacga ataaatttaa ccattttctt aatatcctaa ttcaaaaaac tctcataatt
     6661 atcaacaata tgctcaatta aacgcccacg gctataactc acaaacattg ttttttgcga
     6721 atttccccaa atttttaacc gcttgccgtt tagtaaatcg tctatttgat gttcagtaac
     6781 ccgtcctcgc attgtaatca gttcatttct taggcaattt cgagcctctt cactaatctg
     6841 attatttttt gaccccgtac agttactgac acaagtccaa gggggagcaa gctcccctaa
     6901 taaagcgata gcctcttcgt taaaccctaa cttctcgtag tatttacgtt taacctccgc
     6961 tcgttccgtt tcggttgcat tttctaattt tttctgtaat tgttgctcct cccagttttt
     7021 aggtttaagt tgaatgctcc actctttcgg gcgtgtatta atctgcacac cgtttttaat
     7081 gttaataatg ccgctcactt ttaatgatgg ctcttgatac atcgtatata acgcctcacc
     7141 ggtttcgctt ttgcgttcgg tataagtaat acgtgcaact aaatcggcac gtttaaccaa
     7201 cgcaccgcct aattcttcgg tgaaaacgtc ccactcaccg ctatctgcaa tcacacggag
     7261 tttctctaaa gtttcatctt cttgctctac actccccaaa cggcgtaact cacgccataa
     7321 gctgatcgga atattaccta actgctggaa ctgtcgaata caccaaacgc tagaccacgc
     7381 tcctacacga gcggcattct ctttcgcctg aatatttgcc tcgtctgaaa gctcgccgtc
     7441 cattccaaaa ccgtcaatgt ttttagaaac atatttcact aaatagcccg ttgccgagcc
     7501 tttctctttc tcaatacgct tgaatttgca acggtatttt ttcgcaccgg cttctgtgcc
     7561 atcgacctct aaggcataac tcaagaacac gcggcgaagc ttttccatat cttccggacg
     7621 agtgaataga attaaatgcc agtgtggggt agcgtcagcg tgaggttcag ccactcgaaa
     7681 accgtaagcc attacgccct cacggttgag tttggcacgg attttcgccc aagtattcac
     7741 aaggtaaacc tgtgtttccg cagggcttgc tccattccat ttcgggttca cgctactggt
     7801 tcttgaaagc attgcgtgat acttagacgg agcagtcaag gtaataaacc acccctcgtg
     7861 cccttgctta tctgcataac gctcaaatcc attcatacga gtgagtaatt caaggcgttt
     7921 aattttcggg ttagaggcag acttcaacca cgtttcaaat aatgaaagtt gctcttccgg
     7981 ctcggcgata ttggcaatga tcattgattt caaataatca atattcgcct tgcgttgagc
     8041 ctcaaacgct ttcaagcgag catttgaaca gtaaggcgaa agcatattca ccataccgca
     8101 cgcaatagct aaatgctctt tcatctgttc ggcaatttta gataactttc tagtccacca
     8161 tttttcacag gtcattttta aaaagcctgt ggtaatttcc tcttcagtta atctaccctt
     8221 tctcgctttt ttctgataag gcgaatcaat cttgagctta tttacctctc ccatcattgc
     8281 ccgatagcat tcaagcaaca cactataggc tgtgtcgcca tctgtcgctt tgtgcatatt
     8341 ctgctcgatg ttatcttgct gaatttggcg aacacgataa gcaataccta aggcaagctg
     8401 tttgatttgc tcttcggttt ggtaagcaag cgggcgaatg ccgtgagctt ttaaatagcg
     8461 agagctattc tctaaacggc aaaggtgcat aggcagttga atacctttca cttcggcatc
     8521 ttgtttaatt ttttgtaccg cttgttgcgt atcaacaccg gcaccgaaat aaacattact
     8581 atctaattca gctaaaaaat ctaaatcttg atgggattgc ttcagaaaat cgaatacatc
     8641 gcaatactgg ctaataactg cctcaatgcg tggcattttg cgtgccattt ccgctttgaa
     8701 ccagtctgct gtgtcgtatt ggctttggta atgtagcttt tgcttatact gtctgccgaa
     8761 atgctctgct aaggcacgag gcaaacgctc aaaataagat tggcgtaacg gttcgtgaat
     8821 agggtctttc gagaataatt cttgctggac cattgaagtg taaggctgtt tgaacgcttg
     8881 atataaacga tcagaatgaa gctctaatgc acaagcagaa gcaccggcaa caggtgggag
     8941 tgaaacacct attgcgaaag cctctgtagc agatagaatc tcattctgat aattcattta
     9001 atgaaagttc cgttataagt taaacaaaat gcttgctcta acaagcggat attctcaaca
     9061 tcttgagggc ttaacggctc tttaatatta ccgctccacc ctaattcatt tttcagtagc
     9121 cataacaaca aaacatcact ttctatatgg ctctctacgt tcttattggg gtgtgttggg
     9181 tctttatata aaactaccct ctcaccatta caaaataagg cataccgccg ttttagctca
     9241 tatcgctcaa tccggtaagt gttacctctc ggggcttgcc agtttgggtg aatatgtgtg
     9301 taagcggatt tagtaatctg gctcatctca ccgttaccgt aaatttaata tctgttttag
     9361 ctcctgcttc ttggttgatg atatggttat acaactcatc aaacggttta tcttcggcac
     9421 gaataaacat ataagcgatg atttcgctta aattggtggt atcacgcaat agctcttcgc
     9481 cttgatacaa ctgataacac ggcttgccgt ctgcatctaa aatatctttc ttgattttgt
     9541 aatcgttcac agtaattaat gacatttttc taccctctac tcattcacta aacattcgtt
     9601 ttgataacgc tgaaaaaaca cttgataccg gcgataagca tagcgattac cggttttgca
     9661 ccacagtttg tgaaaaaact cacacaattc acggttacgg ctcatattta ctccttctaa
     9721 tccggtgcgt taatatgttt ttcacgcagt tttgattctc ttttcattac tcgctgaaaa
     9781 tctgctatct gctctaacca caagctaaaa ctatgtaaaa ggcgtttttc ttgtggggaa
     9841 tacgctcccc aaggtttcgg ctcggggtta tcctgcaaga atgcgactcg tagtaagaaa
     9901 cgtttaaaat cgtcgttttc cttcccccaa atctcgccta agtgattgca agtaaattgc
     9961 ttgtgattag tgttaatgcg tatcttttga tacgttgcca cgaaatccat atctacctct
    10021 tactaaggat tacccttgct acccaacacc tttttaaaca ttgcaaacaa accttgcttt
    10081 tgggtctgtt tgactttttc cagcttaatc acacgggctt tcagcttttc attttggcga
    10141 attaaccgat tcacttttaa ctccaacgct tgcagtaaat cgccaatctg ctcactattc
    10201 agctttgcca gctctacttc atcagctaac cggctttcta aattcgccac ccgcttttct
    10261 tgcaaaaaca gattaaggcg acgtttattc atcttcttaa ggcggttaag tctgttccaa
    10321 cgtgatttgt gtcggtaata taattgctta ctcattgttc aaattcctga atttagggtg
    10381 caaaaatctc gccctatgca aataaggctt attttgacga ttgtttaaaa attgggatta
    10441 gtcttgctta ggttggtctg ccacaacgcc atcgaacaaa tccggcgtgt tcaaatcggc
    10501 ttccatcaag catttattaa tacgcattgc ttccggtcgc tctttataaa tcggtgtgcg
    10561 aacacggata atttgacttt gcacaagttg ctctgtgccg cagttattac aataagtaac
    10621 agcctgaata gtcagcaaac cgattttttc agatgtacga acccgtaaat ttttactttt
    10681 gcaatttgta caggtgtggt ctaaattcat tatttcccct acgccttccc caaggctcta
    10741 ttaacattct ttacgttgat ttcggcttat ctatccccat agacaagcag tcgaattttg
    10801 gttatgtttt agatattgtt taaccctcca aaaggaaatt ttatgaatac tgaagatcaa
    10861 attattgaac tgactgttga agttgaaaac ttacgccatc aactaaacgc caaaaacatt
    10921 attcttgatg atttaaaagg tcgcttaaca gactaccaac gcaaacgact ggaccggctt
    10981 ttcgaacgtt cacgccgaca gtatttaaat gaccttgacc ttgaagaaga gcaagctgaa
    11041 gctcttgaag caatttgcaa cgagcttgag tcgtttctgg cgaactaata ccaaaatcca
    11101 acaaggtcaa atctaaacgc catttaccgt cttgattacg tcttacagta aatttcccac
    11161 tcgctagccc tgcctgttca gggcttttat tttgctgttg catttcccaa ctcctcacaa
    11221 atttcacgaa ttgttacctg cccgtttgtg gcagcttcga tttttagtag atattcagcg
    11281 gaaattccgc ctccgtttag ccatttcaag accgtaggct gactaactcc acaagcttca
    11341 gctaattttg tttgtgttcc tacaagttca atagctttct gaattttctt attagtcata
//
LOCUS       DANLXB010000078        11400 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLXB010000078 DANLXB010000000
VERSION     DANLXB010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11400
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            73..957
                     /gene="oxyR"
                     /locus_tag="PXD41_001385"
     CDS             73..957
                     /gene="oxyR"
                     /locus_tag="PXD41_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL6288912.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            960..1592
                     /gene="fabR"
                     /locus_tag="PXD41_001386"
     CDS             960..1592
                     /gene="fabR"
                     /locus_tag="PXD41_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL6288913.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(1619..1918)
                     /locus_tag="PXD41_001387"
     CDS             complement(1619..1918)
                     /locus_tag="PXD41_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL6288914.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(2007..5822)
                     /locus_tag="PXD41_001388"
     CDS             complement(2007..5822)
                     /locus_tag="PXD41_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6288915.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(5785..6270)
                     /locus_tag="PXD41_001389"
     CDS             complement(5785..6270)
                     /locus_tag="PXD41_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288916.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(6279..8438)
                     /locus_tag="PXD41_001390"
     CDS             complement(6279..8438)
                     /locus_tag="PXD41_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6288917.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(8667..8867)
                     /locus_tag="PXD41_001391"
     CDS             complement(8667..8867)
                     /locus_tag="PXD41_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL6288918.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            9231..10385
                     /locus_tag="PXD41_001392"
     CDS             9231..10385
                     /locus_tag="PXD41_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL6288919.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(10433..>11400)
                     /locus_tag="PXD41_001393"
     CDS             complement(10433..>11400)
                     /locus_tag="PXD41_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6288920.1"
                     /translation="TEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNISEHIKNILK
                     DKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRKWANSTLRT
                     YLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKLSSDYDKTD
                     KNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRKGDIVIAKN
                     YLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFSVLGNGGTI
                     THKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
BASE COUNT         3179 a         2579 c         2019 g         3623 t
ORIGIN      
        1 gcattatact cacaaatatg gcataattca gcctatcaga acaataggaa aaatttaaat
       61 tggaggaatc aagtgaatat tcgagattta gaatacctta ttgcacttgc agaacataag
      121 catttccgtc gtgcagcaga atcttgtaat gttagccaac ctactttaag cgggcaaatt
      181 cgcaaattag aaggcgaact aggcactatt ctgcttgaaa gaaccagtcg caaagtcctc
      241 tttacgcaag caggcttaac attagttgaa caagccaagg tagttttacg tgaagtaaaa
      301 attctaaaag aaatggcaag caaccaaggt aaagagatgt ctggcccgct tcatgttggt
      361 gtaatcccaa ccttggggcc ttacatttcg ccaattattg tgcctgcatt aaaagcagaa
      421 tttgcagatt tagagctgta tatttacgaa ttacaaacca accaattatt agatcaactt
      481 gaatccggcc agcttgattg tggcattatc tcatttgtaa aagagagtga atcttttatt
      541 gaagtgccta tctttaatga agaaatgtac ttggtagttc cagaacaaca cgaatgggca
      601 gcgcttaaaa aattcgatat gaatttatta aaaaaccgtg agttgctctt tttagacagt
      661 ggccattgtt tacgcactaa tacgctagac tattgtctat ccattggagc aaaagaaaat
      721 ccacacttta aagctaccaa ccttgaaacc ttacgcaata tggtagcagc aaatgttggc
      781 ctagcattga ttcctaaatt agccgctaaa ccgattaaag gagtacatta tattccactt
      841 gaaaacccga aaccgtttcg agctgtggga atggtgtatc gaccaggttc accattacgc
      901 gcccgctatg agcgtttagc tcaagccatt actaaaatta tgcaatccga ggcgtaaaaa
      961 tggcaaacgg tatgagtgtg cgcgcaattc agaaagaaaa aacacgcaga gcattagtag
     1021 aagccgcctt taatcaatta agctcagaaa aaaatttctc taatctcagt ttgcgtgaag
     1081 ttgcacgtga agctggagtc gcaccgactt cgttttaccg ccactttaaa gatatggacg
     1141 aactaggctt agcaatggtg gacgaatccg ggctactatt acgccaatta atgaggcaag
     1201 ctcgaaaacg aattgcaaat ggcggaagtg ttgtcgtggt ttcagtggaa acattcttcg
     1261 aactgattgc cgaccgccct aacgttttcc agctattact acgcgaaagc tccggtacat
     1321 cgcaagcgtt tagaaccgca gcatcacgcg aaattcaaca ttttgtagct gaattggcgg
     1381 actatattat gagcaaagat aatcacagta accgagaact tgcttatatt caatcggaag
     1441 gtttagtcac gctagtattt actgccggtt ctcatgcttt ggatatgaac aatcaagaac
     1501 gggaaaaact aaagcaacgt gtcattatgc agctaagaat gctgattcgt ggctccacct
     1561 attatgccaa taaacaagct tcatcaacat aaaaaaacag acgcctaagc gtctgttttt
     1621 attctttcgt aatatatgca gtcgatagct ttaaccattc tagtgctaat tgatgatgtt
     1681 cagataacgc attccataac gcatcttctg acaagatact ataattgcct ttagtatcta
     1741 actgttcatc aaaactatca tgtaattcac gccattccgg gctagcataa aaccgactta
     1801 agggttccaa aagtgcagaa gctcgtttcc attgctcaat ccccttttcc aattctggta
     1861 atagctctac ccattggtta taacaatcct gcattttctg aatatctgct tttttcattc
     1921 tttaccgctt acaccataaa ttttagcctc aatataacat aaaaatcccc ttccgaagaa
     1981 ggggatttca actcaattag gctaaattac cactggtatc caacgcctac accgccacca
     2041 aagtcgcctc ggctattcgc attaccttgt aatttcaaga taagcttacc gttatcactt
     2101 gaacgtgaat aacctactgc aagcgcgttt tcacctttaa atgtaccacc tgctgcagcc
     2161 accatagatt tacctggaat gtaaacctgc ggtaacgctg ctgctgcatt tgaaccggca
     2221 ataccagcac gggcttcacg gttattacga tggatcttgt tatttaagtg attaacagca
     2281 ccttttaact gaccaacatt aacagcatcg gtatctgcct cacctgcttt aacattagta
     2341 atacggttac caccattatt taagccatct ttcgttaagc ttaccgcttt tcctgcagag
     2401 ccattattaa tggttacgcc attattgttc accaatgtat caccagtctt gctagtaaat
     2461 tcaggggtat ctgaaacggc tacagttaca tcagaacctt tacgtgtcac tttgatatta
     2521 ttacctgcat tcacgctcac tgtactacct gcttttactt tcgcaggggc tttatcccct
     2581 tcaaccgcac ctgtaccaac tgctttagaa tctacgttcc agcttacgtt gtttacggca
     2641 tttgctactg ttgttgcatt cacaaagcgt gaaccggtac cgttaggatc ttgaacattg
     2701 attttgccgt tatcagcaac ggttaaatct gtgatgttta cgttcacttt cacctcacca
     2761 gccttatcac tggtaatagt tgtaccatta ccatttacga tattgataga accatcttca
     2821 tcagtaccaa tgttattacc attcactttc gcatagttgt tcagctgttt accgttgata
     2881 acatctgtgc ttactgggct aatatcgcca tctgctacat tagtgatctt agttggttta
     2941 ccgtctttat caccgacttt gatgttatca ccatcattag tgattttcgg accattctca
     3001 ctgaactgta cgctattgaa gctcacatct tttgctgtcg caaaagtaaa ttgattacca
     3061 tcacgtttaa cagttaagtt atcacctgct tcaaacacaa cttcttcgcc cgttttcact
     3121 agcttagtcg cagcttggtc accggcagcc ttattacctg cagatttaat attaaagcct
     3181 gcattattca ctgcatctgc aacagtttga gcaatcaata acgcatttgg ctgagttggt
     3241 gctttcaccg taccatcttc gttgttacct aactcactgg tatttgcagt gatgttacct
     3301 tcattatcta ctttaatagt agtaccgtca gttttcgctt caacgttata agtagttgaa
     3361 ccatcagcat tcgtgctagg tgtgatagtt acacctcggt taccgcccac tttcgtagta
     3421 gctgcattag ttgccgcttg taaatcacct aagttcacta cgttgtttag cttgtcgcct
     3481 tcagcatttt taatcgcttc tgcacggtct ttaccctctg gggttgagcc atcttcgtta
     3541 cgaacactac ttgccacatt gcctaattga acaggggctt cacctgtgaa tttagccgta
     3601 ttgcttggcg ttgagctatc agtaggatct tggtttacaa actcaatcgg gctatctact
     3661 ttaatcgtat tcttaccgtc tttgttttca accgtgaccg ttgtaccttt accgttaata
     3721 aaatcaaccg tgtcattatg taccacagta tcaaccgctt tgccgttacc ttgtaaattc
     3781 cagcctgcat ttaatacatc acctaatgtt gctgcattac ttaacttatc agctaagttg
     3841 gttggattat tgtctgctgg ttgaacctta tcatctgcag tcacaggtat cagattagac
     3901 gcaacattgc taatcgcttt attacctgca ttgataccat ctttattgat agtaattgga
     3961 ttatttgcag gatctgcttc atcagttggt acagttacag tgttagaggt tacgctgcta
     4021 aacttaacat catctttagt cgcataaatg actttaccat cagcttcttg cttcacagtt
     4081 aagtttttac ctgcaaccat ttcaactgct ttacccggat taatcagttc atcaccacct
     4141 gaaagcttct ctccaccttc tacagccgac gttttcaacg taaagcctga gttattgatg
     4201 gcgttggtaa tatcacctgc tgtcactaat ttcttagcat catcagcggt tggttcatca
     4261 attctaccgt cattatttgc atcatttaat gccgtagtgt tagccttgat cgcaccggtt
     4321 gtaggatctt ttacaattgt tacatcgtcc gtattcacag aaagatcgaa cacattcgcg
     4381 ccatcagcat tttttgtcgt gttaaccgta actgatttat cagtcgactt cacttcttca
     4441 cgagatgcca tagcgaaagt ataaagctga ctaccattta ctgcatcttt actatctgca
     4501 tttacgtcac cggcagctac attagttact ttgactgcat taccgtcttt gtcaccaaca
     4561 ttgatattac caccattgtt agtaatctta ggaccttcat ttccgaactg tacactatca
     4621 aaattcacat tttttgcagt tgaaacagta atgttattcc catcacgggt aatctcaatg
     4681 tttttaccat ttaagaactg aaccgtatca cctgttttca ccaggctctt ctcgtcaccg
     4741 tttgctttaa tgttaaaacc tgcattgtta attgcatctg caacggtttt agctgttact
     4801 aatgcatttg gttctgtagg ctcttccact ttaccatcag ggttatttgt taactcgctg
     4861 gtgtttgccg tgatttcgcc cttatcgttt accttaatgg ttgtaccatc cgtttttgct
     4921 tcaacggtat aagtggttga gccgtcatcg ttagttttag atgttacagt aacaccttta
     4981 tcaccttcca ctttggtggt tgctgctttc attgctgctt gtacatcacc cacattcaca
     5041 gcattattca acgtatcacc tgttgcgttg ttaatattat ccgcaatcgc tttacgctct
     5101 gcatctgttg gtgctgcttt atctgcaaat gtaccaccca cgccgctctt cagattagtg
     5161 attgagcctg ttgtatctgg tttaccattg ctcatatcaa tgctgttgaa tgcaacatta
     5221 tctttcgttg tgtaagtgaa tttaccgtca gcttgggtaa gtgtcatatt tttacccgca
     5281 tcaaaggtaa ctgtttcact tggcttgatt agctgtgttt tcttaccttt ggtttcacca
     5341 ccatcaacac catcacctgc tgttacatta aagcctgaat tattgattgc attagcaata
     5401 tcacctgccg tcactaattt cttagcatcg tcacctgtag gctcagtaac tttaccttca
     5461 ggagaattat ttaatgttgt ggtattcgct ttaacttcgc ctgttgtcgg atctttcacg
     5521 atagtaacgt tgtcagtatt cactgtcata ttaccgtcat tatcacgacc gatagattta
     5581 tccgttgcaa catctaccgt atattcagta ttgcctttat catcttcctt tccggcttta
     5641 acagttacgg ctttagaacc agctactaca gatgaggttt tctctgaatt attaattgca
     5701 tcagccacat taccacgagt tactgtagga gcacctgctt tcgctacatc taccgtatag
     5761 attgtttgac cattatcacc tgtttcaggt gcaccaacag ttgctaaacc tgaacctttc
     5821 acttcggttt tgtgacgctg ctgcttgttt taactgactt acattcaccg catcagtatc
     5881 agcttcacct gctttcacgc ctgtaatttt ggttggatta ccatcattac ctgcaatatt
     5941 aacattacca tctttattcg tgattttcgg gccattatca ccaaatgtta cgctatcaaa
     6001 tttcacatct ttcgctgttt cgtacgtgaa tatagtgcca acacgtttaa cttttaagtt
     6061 atcgcctgct gcaaaaatca ctttttcgcc cggattaatc aactctgctg cttcttgatc
     6121 accatcagct ttattgccac cagattttgc attccaacct gctttttgaa tcgcttcaga
     6181 aactgttttt gtagttgcaa ctttatcttc ttctgcaggt gtagttactg cacctgttgt
     6241 gttatcaacc gtgatagaac cggtatccac atcaaaggtt actttacgcc atcagcttct
     6301 tgtgtaacat ttgaaactgt acctttaccg tttacaaatt gtacagattc atttggggtc
     6361 actgtgcctt tggtttcacc cgcattatct ttaatattga aaccttggtt tacatagtta
     6421 tttaagttcg taattgcatc gccaacgttt gttgcagtat taccatactg agttccagct
     6481 gcattcgtta cattatattt aggctgagtc acagagccat ccggattcac aacagaaccg
     6541 ccaccaaaat tatttgcagt tgaatttgca aggttactgg ttgcattcat tgccatataa
     6601 agttgtgaac cattaatcgc atcggttgat gtagcagaaa tctgacccgc tgccacattt
     6661 tggatttgac gctctttacc tgcagagcct acagaaacaa catagttagt atctttattt
     6721 accccggcaa agccattata agtaataccc cctaccgttg cattttcagt tggtgttgct
     6781 gcccttacga ctgattcgct acccaaagca acagaactat tcagagtagc ttgagctccc
     6841 atacctaatg ctgtagcaaa ttgagctgtt gcattagcac gtgtaccaac agccactgct
     6901 gattgtgctg aggcaattga atttgcacct acggctaaag aggcatttgc actcgcattt
     6961 gctgcaacac caaaggcaga agctttttca gccgttgcat tagcattaga acctaccgct
     7021 gtagcatcac ctgctgtcgc atttgtttgg cgaccaagtg cggttgtacc attagccgtt
     7081 gcatttgctg aatgaccaac tgccgtagct tgaatacctt ttgaaaccgt agcaacacct
     7141 aaagataacg ctccgttacc atttgcattt gagtttgtgc ctaatgctac tgccgcttgc
     7201 tctccacctg ttgccgttgc attcgggccg atcgcaattg agtttctgct cttcgcgcca
     7261 tcattagctt gattctcagg tacggttgaa ttcacagaga aatattgaat ttggcttgct
     7321 tgcgcaggaa tattgacaga aagatcataa ataaccgtgc catttgcatt tctctctgta
     7381 ctttttacag ttactgtacc atcgtttgaa acaacagtag cttgggtatc tttcgtaaag
     7441 tcatcaatgg ctttcttagt taaaccaatt tcatagttag ttgtattcgc agcagttgca
     7501 gctttacctg ttacagtaat gtaatcaggg ctagaagaat ttgccgtggt gttatacgca
     7561 tttactgtat aaatagtttg cccatttgca ccggttgcat ttgtaatatt aacattgcta
     7621 cctgcaacaa cttctgtttt taccgctttt aatgcttctt caatcgtatt tttatttgtt
     7681 ccaccaatat tagtataggt aacagaacca tcaggcttta ctgtagcatt accacctaaa
     7741 atatttttag ttgaattagc aaggttacct gttgcgttca ttgccatata aagctgtgaa
     7801 ctattaattg catcggttga tgtagcagaa atctgacccg ctgccacatt ttggatttgg
     7861 cgtttgatcg tgtttgagcc aacagaaaca acattccctg ctgccgtagt attagccgca
     7921 aagccggaat aagtaatacc atttaccgtc gcagaaggaa ctgccacagc gttggaaacg
     7981 gttgaattac tccctaaagc aaccgaatta tttagcgcta cattagcacc tgagcctaag
     8041 gcaatagcaa aaccggcact tgctttagca ctatcaccaa ttgcaaccgt agattggttg
     8101 gaagatactg cacttacccc taaagctgtc gcattaacac ctgaaactgt cgcattataa
     8161 ccaatcgctg tacctctagt tgcagtagaa gttgcattag cattagcact tgaacctaaa
     8221 gctaaagaat aagtagcatt tgcaacagac ttatccccca ttgcacctga acccattgca
     8281 aatgaacgag tgccactagc ggcagatctc catcccatta ctgttgaacg gttaccagta
     8341 gctagagctc ctgcaccaaa agctgttgca cggttacctg ttgcagcagt atccgtacct
     8401 aatgcaatag catttgctga agtcgctcta gcccccatac caatagcaat agaaggaact
     8461 aatgcccaat tctgaccagt gttattgaga ctctctacac caatattata gtaatgtaag
     8521 aagtatcttc tggatccact aaatttgttc tatgcgttgc attcgtatct gtaccaattg
     8581 caatagtaga tctgccagtt gagattgaat ccgcaccaat agcaattgcg ttctccgatg
     8641 atgcagttgc ttgtgttgaa atataattac ttgttgttga acctataaga tacaacagcc
     8701 acagcatcat tagctcccaa cacggcacta gctccagcca ataaagccaa tgttgcctta
     8761 cttgcagaac taacagattt cgttttacct ttcgctcgtt gtaattcaga tactgcaacc
     8821 caactttgtg ttgcctgatt ccaaataact ttaaaaattt gattcataat cgaccctata
     8881 taaaaataaa aaagattacg tagaacctat gttcaacata atcttcacca atataaaaaa
     8941 ccgccaccta tttaagtgaa ataacttact tatagactca gaaatttaag tgcgcgtatt
     9001 ttacgctatt tgtaatataa ttcatcttct ggagtgtaaa tttattgtaa ataatacgag
     9061 gaatctaacc gcttgttata acgcaaaaca ccttgactta aatcaagcca ctacctcatt
     9121 ttgaggggag atttatacgc agtgaaattt taaaataagc taaggtttac ggataatcgt
     9181 tcaacactat tgaattatca ctgtagttat cgttaaaaag gtatgctttt atgaaccaat
     9241 tcttccctct aatctttagc ttaactctat tttccggcgt aactttggca ctagaaaaag
     9301 cacctcgaac tatgccgaca gaaggaataa ataagcccct acttggacaa attctattct
     9361 ttgacaatat gctgtcacac aacggttcac aaaactgctc cagctgccat aatccggatt
     9421 atgcctttat tgataaccgc actactccgg caaaaggggt ggtttcacaa ggagatactc
     9481 caaccaaatt cggcaaacgc aactccccga ccatgcttta tgcgaaatac tcgcctgagt
     9541 tccactttga tgagcaaagt caagaatata tcggcgggca gttctgggac ggacgagcca
     9601 aaaatctcgc cgagcaagcc ggtatgccgc ctatcgaccc aaatgaaatg ggaatgccta
     9661 acaaattaga agtagccaaa agattatata atgtgccgat gtatcagcga tttttagggc
     9721 aattttacgg tgaaaaggta tgggaaagtt atgaaagcgt ttatgcggca atggaagatg
     9781 cgattgcgac attccaacaa gaaaacaaac ttctcgctcc atttgattca aaatatgatc
     9841 tatttttaaa aggcgaggta caattaactg cattggaaga aaaaggcaga gctttatttt
     9901 tcaataaagc tcaaactaat tgtagtagtt gccaccaatt acagagtgct gcaaaccacc
     9961 aagaagaaac ctttagcaac tatcactatt acaatgtagg cgtacccggt aacccagact
    10021 tgatagcggt taacggcttc gcaccagact tcgtcgattt aggcttattt gaaaacccaa
    10081 atgttaaagg tgatgaaaca caaaaaggca aattcaaaac cccaacattg cgtaatgttg
    10141 ccgtgactgc actttatatg cacaacggtg tgtttaaaga attaaagact gttttgctgt
    10201 ttttagacag ctacaataac ccggagcgaa aaatcaaccc tgaaaccggc acggcgtggc
    10261 aacaagcaga atttgaaccc actatcgccc accaaaaact caaagccaaa cccttaagcg
    10321 atgaagaaat tgatgccctc gaagcatttt taaaaacctt gacggatgag cggtatagaa
    10381 aataaggcta caagcggtaa aattttgggg aaattttacc gcttgcgttt aactaccgtg
    10441 ttagctcact ttctaacttt tccaatgcct gcaaatcttc ccaatctgcc tctttctgtt
    10501 ttaaacattt acgctgaata tcaaattttt cgtattgctc tctgacaaag ctttccattt
    10561 gtttatgcgt gattgttcca ccatttccta atacagaaaa gccgttaaac tcaatcaaca
    10621 tatctacatt tcttcgccag aaacctaacg taagatcttg gttgttcttc acacgtaatt
    10681 cggcactttc aagaaagatc attaccaagc gatttaaaga atccagctca ttattatcta
    10741 aatagttttt cgcaatcaca atatcgcctt tacgcacgac ttttcctttc cagctagtta
    10801 atcccatatt catcttagtc gcatcagcac gttgacaaat caactcagcg gcagtgtgtt
    10861 tggttattgc ataaatgagc ttattttgcg tttctgcaaa aaacatttgc gtatttttat
    10921 ctgttttgtc gtaatcgcta gagagtttga aaagctctcg tactttttga tagaaacgca
    10981 attcacttgc ccgaatctca cgaatctgtt caagtaattc atcgaaataa tctaaacgac
    11041 cctgcggatt tttcaaacgc tcgctatcaa ttaaaaaacc tttttcgaga taagtgcgta
    11101 atgtgctgtt tgcccatttt ctaaactgta ctgctcttgg gctacgaact cgaaacccta
    11161 tcgccagaat catttcaagt gaataatgtt ttacttgata attcttgcca tcttgagcag
    11221 ttatcaagta atccttgata actgaattct catctaactc tttgtctttt aagatatttt
    11281 taatgtgttc ggatatattt tgcacagagg tgtcaaaaag ttctgcaagt tgattttgtg
    11341 tcagccaagc ttcattttca accactaaca aggctacatt gcttttgccg tcttccgtat
//
LOCUS       DANLXB010000079        11250 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLXB010000079 DANLXB010000000
VERSION     DANLXB010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11250
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            197..925
                     /gene="ttrB"
                     /locus_tag="PXD41_001394"
     CDS             197..925
                     /gene="ttrB"
                     /locus_tag="PXD41_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL6288921.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVMVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            927..1958
                     /gene="nrfD"
                     /locus_tag="PXD41_001395"
     CDS             927..1958
                     /gene="nrfD"
                     /locus_tag="PXD41_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL6288922.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            1948..5043
                     /gene="ttrA"
                     /locus_tag="PXD41_001396"
     CDS             1948..5043
                     /gene="ttrA"
                     /locus_tag="PXD41_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL6288923.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5184..6029
                     /locus_tag="PXD41_001397"
     CDS             5184..6029
                     /locus_tag="PXD41_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6288924.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6142..7539)
                     /locus_tag="PXD41_001398"
     CDS             complement(6142..7539)
                     /locus_tag="PXD41_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL6288925.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7629..8252)
                     /gene="gmk"
                     /locus_tag="PXD41_001399"
     CDS             complement(7629..8252)
                     /gene="gmk"
                     /locus_tag="PXD41_001399"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6288926.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8365..8838)
                     /gene="gpt"
                     /locus_tag="PXD41_001400"
     CDS             complement(8365..8838)
                     /gene="gpt"
                     /locus_tag="PXD41_001400"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6288927.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(8984..10393)
                     /locus_tag="PXD41_001401"
     CDS             complement(8984..10393)
                     /locus_tag="PXD41_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6288928.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10589..>11250)
                     /locus_tag="PXD41_001402"
     CDS             complement(10589..>11250)
                     /locus_tag="PXD41_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6288929.1"
                     /translation="LAAEKAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGN
                     SKETIEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKL
                     PTEGTATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINN
                     TQISSTVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQ
                     K"
BASE COUNT         3023 a         2637 c         2577 g         3013 t
ORIGIN      
        1 aaaactttag atctaaacta aaccatctta ttgcttttta attagtatca atgccctatt
       61 atctacttgt atagggcatt tcccttcatc cttgacccaa atcaactttc cccttgatat
      121 gtggaaaacc acaatacctt gccgttccct ctccgcctta gaataccttt gttattttta
      181 aatttgtggg ggaaatatgg atttaagcaa acgttccttt ttgaaagagc tttccgcctt
      241 gacggtgggg gcgagttttg tgccgttgca atcggcccag gcgtttatgc cggcttggcg
      301 tgagggcgat gagaacaaac gctatgcgat gctgattgat ttgcgtaaat gtatcggctg
      361 tcaagcgtgt accgtgagct gttcggtgga gaacgccacg ccgttgcaca gtttccgcac
      421 cacggtgcgt caatatgaaa tcaccaacgg cacgcaggtg gtgaacaatg tggtgttgcc
      481 tcgtttgtgt aaccattgcg atcaaccgcc gtgtgtgccg gtctgcccgg tgcaggcaac
      541 ctttcaacgt aaagacggtg tgatggtgat taacaatgag cagtgcatcg gctgtggtta
      601 ctgcgtgcaa gcctgcccgt atgatgcccg ttttatcaat gaagagacca aaaccgccga
      661 taaatgcacc ttctgcactc accgtttgga ggtaggtctg ctgccggcgt gcgtggaaag
      721 ttgcgtgggc ggggcaaggg tgattggcga tttgaacgac ccgaaaagtc aaatttccca
      781 actttatcaa gcccacaaag atgatttgaa agtcctgaaa ccggaggccg gcaccgtgcc
      841 acacgttttc tatgtggggc tagacgatga tgcctttgtg agcaaaattg acgggcaacc
      901 aatgctctgg acgggggagg cgtaaaatga ttcgtgaagt attagtggaa ccgcaacata
      961 tcgtctggtt gccgtggatt gtgcattatt tcttcttcgt aggcgtggcg gcaacggcag
     1021 tgtttaccgc cgtgctgttt gcaaaaaaat cactgaaacc gaccgcttgc gagctggcgg
     1081 cggtgacggt agccttgatt ggctcgattg tcgcccctgt ggcattgact gccgacctgc
     1141 accaaccgag ccgtattctg catttctaca ccgattttgc gtggcgatct ccaatggcgt
     1201 ggggagcgat tatcctgccc ctgttcagcg tggcggtagc gggttatttt gtgctggcat
     1261 tggctcacca tacccggccg aacctgccga aatggttagc gtggctacag ttgccgatac
     1321 tgcaaaatca aggcttgctt tgggcattcc gcctgtttgc cacactcacc gctatcggca
     1381 ttatcggcta caccgtgctt gaaacctacc aaaccggcac aagaacctta tggcacagtg
     1441 cgtggctgct gccgattatg ctcttttctg cgtgggcggt ggcattgggg cttacccaag
     1501 cggtctgcaa aatgctgttc cacacccaaa ccaacacggg gctatggaca aaactctgcc
     1561 tgattttaac cgcactttcg cttgtcggac tagcattcag tagtccacaa gccacacaag
     1621 attttgccca gctcttcaat ggctcaatca ccgcttacct tgtcggcatt ttctggctaa
     1681 ttgccctcat ttgcaatttt tctgccaaaa accaccgctt gcaatggctc ggcgtgcttg
     1741 ccctcatcgc tttcggctgg ctactccgct gggtactggt gatccaagtc caaaccattg
     1801 ccaaaaccaa tgccttgcaa aatccatatc atttcgattg gacagccgtc gatggtggtt
     1861 tggggattgt ctcgattttt gggctaacgg tgctagtaag tatcgtggta tggcaactga
     1921 ttttaataat ttgtggggga agaaaaggtg aacaataaac gcagaaatct gttgaaaggc
     1981 gggctggcac ttggtggggc ggcggcgttt ggggccgggt attcgccgaa ggtgtcggag
     2041 attgccaaag gggtgatgca cggcacatcg ggcgagaaaa cccgtgatgc aattcacggt
     2101 aattcgctca cgccggagta tcaggtaaaa gacggcaaac tgctcagcaa tcctgagcaa
     2161 attgtgtgca atacacagtg tatgggctgt tggacgcagt gtggcattcg ggcgagggtg
     2221 gatttgaaca ccaaccaagt gattcgcatt tcgggcaatc cgtatcaccc gctttcctcc
     2281 gacaaaaccc tgccgttcgg tatgccgatt gccaaggcgg aactgttgct ggcgggcgaa
     2341 agtggcattg aaaatcgctc caccgcctgt gctagagggg cggcgttctt ggagggggtg
     2401 aacagcccgt atcggattac ccaaccgttg aaacgggtcg gaaaacgggg cgaaggcaag
     2461 tggcagacca tcagctttga gcagttggtg gaggaaatca tcaatggtgg caacctattt
     2521 ggtgaaggcg aagtggaggg cttgaagacg atccgcaatc tggtcgatcc gattaacccg
     2581 aaacagcctg atttgggaat gaaagcaaac cagcttttag ttacttttgc cggccccgaa
     2641 ggtcgtcagc cgattttgca acgctttgcc caaaagagct tcggcacgat caacttttcc
     2701 aaccacgggg cttattgtgg cgctgcgtac cgtgccggtt cgggtgcctt tatgaaagat
     2761 tttgacaacc aacaacacgc caagccggac tgggatcacg ctgaatttat tctgtttatc
     2821 ggcacgtctc cggcacagtc gggcaatccg tttaagcgtc aggctcgcca gcttgccaaa
     2881 cgccgccctg atgacaattt cagctatgtg gtggtttccc ctcgtttgga gatgacctcc
     2941 tccctcgcca cccaaaacaa ccattgggtg ccgattaagc ccgagggcga tttggcgttg
     3001 gtaatgggaa tgttgcgttg gattatcgaa aacgagcgtt tcaatgctga ctacctctcc
     3061 cgcccaagtc tggcagcgat ggaaaatgcc ggccacgtca gctatgccaa tgcgtcacat
     3121 ctgattattt gcgaaccgaa ccacccgaaa ttcgggcagg cgttgcggat tagcgatctg
     3181 caagatgtgc aactcgaccc cgaagagaaa gtggaagaaa acctgattgt ggtaaaagat
     3241 caggcaagcg gcgaactcat ttcagcaaaa gattgcttac aagcggtcat ttttgtcgaa
     3301 caaattgcaa aactgcttga tggctcggaa gtgttggtga aatcctcaat gcagttgctg
     3361 aaagaggcga cacaagagaa aacccttgcc gaatatagcg acatttgtgg cgtgccggtg
     3421 caaaccattg aaaacttagc gaaaaaattc acttcgcacg gtcataaagc caatgccatc
     3481 actcacggcg gcacgatgca cagcaccggt ttttatacca gttgggcgat tttgttgctg
     3541 aatgcaatgg tcggtaacct caacaaaaaa ggcggaatgg cagtagccgc aggcaaattc
     3601 aaagatttcg gggacgggcc tcgctacaat ttagcgaact tcccgaatga agtgaagcca
     3661 aaaggcacga accttgcccg cagtaaaaag gcgtaccaaa attcaagcga atttaagcag
     3721 aaagtgacga agggcgaaaa tccgtatccg gcacaagggg cgtggtatcc gttcaccggc
     3781 gggcaaacta ccgagatgtt tacctcaatg gtgcagggct atccatactt tgcgaaagcg
     3841 tggatcaacc atatggcgaa ccccgtttac ggcttaaccg ctatgaaccc gattgcgttg
     3901 gagaaattaa aagatccgaa aattctaccg ctctttgtct ctattgatgc ttttatgaac
     3961 gaaaccactg cactgacgga ctacatcgtg ccggacaccc acaactttga gagctggggc
     4021 ttttcaacgg cgtggggcgg tgtgcctcaa cgcaccagca ccgcacgcca cccgattgtg
     4081 ccgtccaaaa acgccaaaac tgccgaaggc gacaccatct gtatggagaa tttcgtgatt
     4141 gcggtggcga aaaaaatggg cttgccgggc tttggcgaaa atgcgattgc cgatttagaa
     4201 ggcaaccgct atccgctcca ccgtaccgaa gattacttcc tacgggcggc agcgaacatt
     4261 gcctttgccg gtgagaaacc tgcaccggac gccagcgagc aagatctgct gctcaccggc
     4321 gtgcaacgga ttatgccgaa aattgaacaa acgctaaaag ccgaagagcg attaaaagtg
     4381 gcgaatgtgt attgcaaagg cggacgtttt gccccacacg aaagtgcgtg gaaagaggag
     4441 aatatggagt tccagtggaa aaactgcctg caaatttgga acgaaaacgt gtataaagcc
     4501 cagcaccaca gcaacggtga acactattgg ggctgccctc gttatatgtc gccacgtttt
     4561 gcggacggct ccacgctgga gcagcactat ccgcagtcgg aatggggctt taaactgatt
     4621 tcgtttaaat cgaacattat gagcagtatt accgccccac tgttgcgtct gctctcgatc
     4681 aagcctgagg gcttagtggc gatgaaccgt ttagatgcgg aagaaaaagg cattaaacac
     4741 ggcgatgtgg tgaaactcag caccccaacc gccggcttga cggtgcagat tgtggtgttg
     4801 gacggtatcg cccgaggcac aatcggcatc gaacacggct acggtcataa acagattggg
     4861 gcaagttcct acaccattga cggcgtggaa attccagcca acccgatgat cgccaaaggg
     4921 attaacctca acgacctcgg cattatcgac cacaccaaag cggtcaaatc cccgtgggta
     4981 gattgggtct gtggctcagc ggtgagaaat ggcattccgg cgaaggtaga gaaattagcc
     5041 tagccgaaca agcggttggt tttgcagaaa aatgtgcaaa atcgaccgct tttattgatg
     5101 taagggacac tgttccttat gcaaaccagc attgcagagc gtaaaaaatc atactctgca
     5161 ttttaattta ttttggagaa cctatgactt ttgtcaaaaa aacagcactg agcctgattg
     5221 caacggcact tttcgctaca tcaagttttg ccgctgagca gagccaatac caacatattc
     5281 gtaatgcaac ggcgaaaatt gaatatgccg gcaagacgtt tttggttgat ccgtatttag
     5341 cggagaaaga tcgctactta ccgccgaatg cgaaaaaacg taatccgacc ttggatatga
     5401 ctgtgagcat tgatgaagtg ttaaatggcg tggatgcggt gatcgtaact cacactcacc
     5461 acgctcactg ggacgatgta gcacaacaac gtgtgccgaa aaatctgccg atttttgtgc
     5521 agaatgccgg tgatgcccgt ttaatccgtt cacaaggctt taccgatgtg cgtgtggtcg
     5581 gcaaagatac cccgtttgaa ggcgtaacct taacccgaac tcgtggccag cacggcaccg
     5641 atgcgatgta tgcgaacccg aaaattgccg aaatggtcgg cgatgcgatg gacgtagtga
     5701 tgaaagcgga aggcaaaccg accgtctatt tggtgggaga taccatttgg aaccacgaaa
     5761 tcgaacattc gttcaacact tacaaaccag actttgtggt gctgaatgcc ggctgtgcca
     5821 aactaccaaa ctttgaaggc agcccgatta tgtgtaccga agatgtttcc aaagcacaca
     5881 aaatcgctcc acaagcgaaa atcttaactg tgcatatgga cgccctgcca caaacctcaa
     5941 tcagcagtga tcagatgcgt gattatgtac aaaaagaggg attaaatcgt gtaactgtgc
     6001 cgaaaaacgg tgatgtgatt aagttctagt agctaaacta acattaccaa aatggtttaa
     6061 gtagcaataa atagcgaagc gggttaagcc atcaagcctt aacccacttt taccaaccat
     6121 agtatatagt tttagatata attatcttct gtatttacct gccattgctt ggtaaaccgc
     6181 attctcgttg gtcaaaatcg catattttgc atttaaaatc gccaactgag aattaagctc
     6241 ggtattcagt gcggtaatcc actcacggaa ctccgacacc ccttgttcat aacggttttt
     6301 atagtatgaa ctgatacgtt tatttttcgc attggtatct tgaaggattt ttaacgagct
     6361 tctcgactgc gtataactgt aataataacg gtcaatttca tttaaggctg aggtaatttt
     6421 ttgctcatag tttaaacggg cagtcacata atccgtttca gaaattttta cgttattttt
     6481 aacccgattc caatctaaga acggtaaatc caatttaatt aagccgttac ccacagggtt
     6541 atctgccaca ttgccgatat tggttgcact accggtaata gaaccaccga tggttaaggt
     6601 tgggaaccag cttttctcgg ttgcggttaa ggttttaaat gcactttgta agcgttgtaa
     6661 cgagcctact acatcagggc gattagcaat ggctgacact ggcacattta aatctacccc
     6721 ttgcaatttc acgctcataa tattcgggta acgaatgtta agcggagtat ttggctgaac
     6781 atttaacaaa ttgcgtaatg tttgctcggc aattttttgg ttggttttca gatcaattac
     6841 actatttctg gcgtttaaga ccgcttgttg agcctgatca accgctaaac tatcaatcgc
     6901 accggcattc attttgttag ttaaaatacg gctgatttgc tcataatggc gaatgctctc
     6961 ttcggtaata cgaatcgcat cacgatagta agctaactgg tagtaagtag tcacaaccgc
     7021 attaataata gataaacggg tagcttttaa gtcttcaatg gtggctttat gcgtccattc
     7081 tgccgcactg gcggtatcgg ctaaacgtcg ccataaatcc acagtataac ttaaattaaa
     7141 tgcagcttga gctgcggttg ttgaaacacc ggtcgaaaca ttatttgaag aagccgaacc
     7201 taaaccttta gccgcagaaa cagaacctga accactaaag gttggcacta aatttgcccc
     7261 tactaaatta gcgttataca aggctttatt gactgcaatt ccgcttttgg ctaaatcaag
     7321 gttatttttg atggctaaat caaccacacg gtttaattcc gcatccgtat agccttgcca
     7381 ccattgctcg ttaatttgat attgtttggt aatttcatca tagctttgat aggtttgctg
     7441 tgcttgttgc aaagtcccgt cattgctcat attccctgtg gtacaagccg ttacggttag
     7501 agccaacgcc acagaaaatg ctaattttga aagtttcatt acatttcctt ttgaaaataa
     7561 agaggggaaa atgggcgtat tctacccaaa aacagattgc ctttccagtt aaatgaacaa
     7621 ctgttcattt aattatttaa caaatcagta atcaaatgct gatgacgaat ttgttgcgaa
     7681 cctaagctca aacgctcggc aattaaaatc gcttttagct ctgccaatgc ctgttggaaa
     7741 tcatcattaa taatcacata atcgaactca ttgtaatggt tcatttccga caccgcctct
     7801 gccatacgtt tggcaatggt ttcagcggaa tcttgcccac gcccgattaa acgtttttcc
     7861 aattctgttt ttgacggtgg caaaataaaa acggttttca cattcggcac tttttcccga
     7921 atttgtctag ccccttgcca gtcaatatcc aaaaagacat caatgccctg ctctaggcta
     7981 cgttcaatca tcggcaatga tgtgccgtaa taattgccaa acacctccgc ccattctaaa
     8041 aaataccctt gctcaatcag ctgcttaaac tcatcgtgcg aagtgaaata ataatgcacg
     8101 ccgtcctgtt ctgccggacg aggctgacgg gtagtgtgtg aaatcgaaag ctgtacttcc
     8161 gaacggggta aatccgccaa caaggcgtta attaaggaag attttcctgc tccacttggg
     8221 gcagaaataa tataaagatt gcctaaactc attatttgta tatacctatt tgattttggg
     8281 aatagggcga atgatgattc gcccctacat ttcataggaa taaataaaaa ataatggaca
     8341 actttcattg tccattacac aaaattatct acgtgccaaa ggctgaacga aggtaatgcc
     8401 taaatcccaa ggctgctcaa tccacgtttc ttgtggaata tcaatcacat aatcatcaac
     8461 caacggtgca ccgtgcggtt tcgcaaacac ggttacaaaa cgagctttcg ggtacattct
     8521 gcgaatttct tttgccgtgt tgccggtatc cactaaatca tctaccacaa taaagccttc
     8581 gccatcggta tcggctgcgt gtaacacatt taactcacct tggctatcgt gatcgtagct
     8641 ggcaatgcac actgtttcta cgtggcgaat acccaactca cgtgctaaaa cggctgccgg
     8701 aaacaagccg ccacggctca ccgcaataat ccctttccac tgtgtggcag gtaataaatt
     8761 ttctgccaac ttgcgagcgt gcatatggaa catatcccac gtcacgacat atttttcatt
     8821 tgtgtatttt tcactcatag aaacaaccta atataaaatt gggggctacc ccgatataaa
     8881 aaattgcact aggataaccc gaaaatgctt ttttcgccat catttcattt atttttttgt
     8941 gccggcagct acgcaatcgt atgcttagca caaaaaacca acactaaaat agcttttcta
     9001 aagtgaaaaa gacttccttg ttttggcgag agtaaaaatc agcaatattg ctgtcaattt
     9061 tttgataacg gaaattcagc ttcggcacaa tgccctgcca atgccaagtg cggttccaaa
     9121 ccgctaaatt ggcttgatat tccgtgtcta accgcttata gccaaacaaa tagtgcttgt
     9181 cggcaaaata tcgcttgcca aagccgatac ttgcctgcgt tgcccagcgt tcgccttgaa
     9241 aaaccgcccc cactcgagcc agccacttat tcgagctttg tgctttttcc cgtgcaattt
     9301 cacgcacgcc gtctaaattt gcaaaaaacc gcccattttt gaccgcttgc cactgcacac
     9361 cgccactgag ttggtgctga tagctgttat aacggcttgc ggttagctcc tcaaaatacc
     9421 gtttttgcaa atgggtaaaa ctccccgaca ccaaccattg cgaattaagg taacgcaaac
     9481 cgttgagtgt tgccccaaat tgaacattat aacggctact ccccagccaa ttttgctcaa
     9541 taaaaggcga aaaagtcagc cgataagcga cggtgcggta gctataattc ggcgaaacgg
     9601 atacggattg ctcacggtaa tctcggttat cccaatagta aatcccgcta taattgagcg
     9661 ttaaaccgac aaaatgattg cctttcacgt tgtgcaattt actcaaccct aagccataac
     9721 gcacgccttt tgctgattgt ggcaaactgt ctgcattttt gcggaaaatc cgcccattta
     9781 cattcacaat cggcgaagat gaggcattat tcacgttatc tgtttgggta tattgcagat
     9841 aaaaatcggg ctgccacgcc tcattttcag caatttggac ttgagtattg cgggcaattt
     9901 tagcaagttc cggcggtaaa tgggcttgaa tagccttaaa ttcctgctct gccgcacgaa
     9961 attgctgatc ttctgccaaa atcaacgcca aatcaaaacg agggtaaacc aaactcgggg
    10021 gcttagctaa cagttggcga tagtgaaaaa ctgcggtttg atgatctttt ttcgcatagg
    10081 caagtgcggc ttgcgcatag tgccacaaca acgggtcaaa attttcagtt tgcggataac
    10141 ggcttaaaag cggttcaagc gttgcccaat cttggctgag aatcgcttgg ttaatttgct
    10201 gttcaacatt ctgattgact gaatacgcag gctgataagc ggtcggtttt tgtgaatttt
    10261 ttacaacatt ttgctcaaat ttaaccgctt gcggctgacg ctcaaaggaa atcgggtcag
    10321 tgttgtgttc aatcaccttt tctgcccata caacggggct gaacagcgaa aataaaaggg
    10381 gatatttttt cataaagata aagaaaattg gtaggggcgg acctatatgt tcgcctctac
    10441 gggatttatc actctctccc cttgtgggag agggttatta gaagctgtaa attgaaatct
    10501 aaactattgt gtcttatggt atctacaagc aatatcaaga caaatgccgt ttaatttttc
    10561 gttaaacggc attgaacgtt agaaaaggtt atttttggat atcgccacga gtgccggcaa
    10621 gtccaaaatt actcacttcc ccagtaagat ttgcttttgt ctgaatttca ccggcaattt
    10681 cctctgcatt tttaccgaaa aattcgactg tatattttcc agaaaggttt aaaggattat
    10741 tgccatgtac tgttgaagaa atctgagtat tattaatcgt cccctcttct aatacgatta
    10801 agtttccaaa ttctccctca actctacctg aaccggtacg cttagagaaa ttaacattat
    10861 aggttagatc accaccatta aaacctttag ctccatcgtg gttaaatgct tttcctgaat
    10921 atgttgcagt accctctgtt ggtaatttct ctgttttcaa tcctttaact gtaactgttc
    10981 catcaacttt atcaatataa ttaccgtttt cccagccatt tctttgaact gcttgtgctg
    11041 ttactacaga atatggctga ttatataaat aactctgtgt tctgactgtg actttaccct
    11101 caatagtttc tttactatta ccaagtttta agccgtaatt tgtatcatca ataccttttg
    11161 ctttaataat agctatagga tctacttctt tttctgctgc taaacgctcc gcttccgctt
    11221 tctctttcgc cgctttttcc gccgctaaac
//
LOCUS       DANLXB010000080        11221 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLXB010000080 DANLXB010000000
VERSION     DANLXB010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11221
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            147..365
                     /locus_tag="PXD41_001403"
     CDS             147..365
                     /locus_tag="PXD41_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288930.1"
                     /translation="MYQYYLAQVGNEQQKLIRGMPDNLLSFSVYEPEQEDWDNKFGPF
                     WADKILISGFDAYEEISEKEAIRFIKVH"
     gene            366..779
                     /locus_tag="PXD41_001404"
     CDS             366..779
                     /locus_tag="PXD41_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDL6288931.1"
                     /translation="MCQAEQFARQLHYGQTDKAGKPYIEHLAFVAENISTKNEETEAV
                     AWLHDSVEDTQCSINDIRHIFGDVIADAVEAITKKQGESYFCYLDRVKSNPIAKVVKL
                     ADLTHNLCLERLPKITEKDLKRAEKYKSALEYLQA"
     gene            897..1631
                     /locus_tag="PXD41_001405"
     CDS             897..1631
                     /locus_tag="PXD41_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288932.1"
                     /translation="MKLKLDENGHVVVENGMPVYIHDDGKEIPFDALKATQKITQLNA
                     EAKQHREAKEKAEADLKAFSGIDDPKAALEALKTVANLDAKKLIDAGDAEKVKAEIIK
                     GYDEKLAVATAQAEKLQQQLHAELIGGSFARSKYAQEHLNIPSDVVQAFFGKHFSISD
                     DGKVVAKFADGGEIFSRTRPGEKADFEEALEALVSAYPNKDAILKPSGSSGAGAGGGS
                     RSSSMPKTLSDCKTDEERIAYLQANS"
     gene            1697..2644
                     /locus_tag="PXD41_001406"
     CDS             1697..2644
                     /locus_tag="PXD41_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288933.1"
                     /translation="MAFDLQVFNKQTQLALTETVDQAIEKFNAASGGAIILQNKPAEG
                     DFDIRASFKGIAGLVRRRNVYGTGTVDAKRLEQLLDVAVKVAAGTAPIEYQPSQYKWI
                     LLNPELAAIEIGTQLAKARVADMLNTAIAGTVAAISGNTAMTLDEKTAAPTFRILNKG
                     AAKMGDRAGSLKAWVLHSTTLHGLYDNALTNAENLFKYENVNVIRDPFGRVFVVTDSP
                     ALMASDGTFNTLGLVENAVVVSGNNDFDSVLVPKTGGENLSAVYQAEWTYNLGILGYK
                     WDMTAGGKSPNDTALGTPTNWDKSVTSNKDTAGVLVKTK"
     gene            2704..3054
                     /locus_tag="PXD41_001407"
     CDS             2704..3054
                     /locus_tag="PXD41_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288934.1"
                     /translation="MKRILYFTTDFSAKNIAFAKAHGVLMRNLNAYHPSDTLENADAV
                     CGNVPQAYQHLPLFELPESNQKSGQDLKTLKTEEIKEKLTELGIAFEANAKKETLLTL
                     LTQAVGRDGTNDAK"
     gene            3044..3481
                     /locus_tag="PXD41_001408"
     CDS             3044..3481
                     /locus_tag="PXD41_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288935.1"
                     /translation="MLNSYMTVEQANAYHDIRMSREAWNALSDQEKQQRLVSASDFLD
                     FNYRFSGEKADLTQEREFPRKGFEAIGIPKAVQFAVCELALQDNLTANQEAQMSSVRV
                     GPVSVNYDNSSPQNSVNRFEYVRQLLSTWLDRSSFGTVKLERS"
     gene            3481..3852
                     /locus_tag="PXD41_001409"
     CDS             3481..3852
                     /locus_tag="PXD41_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288936.1"
                     /translation="MADFYGNLGKISHSLIKQFGQPCSVTINEQGRYNPATGERKKGS
                     STVHAGYCLFDNLAFDFRNQQSVSVQQGDVMIYLTADCKPVLNAVIEANGEKWSVINV
                     QPIRPAATTMIYQVQGRKADG"
     gene            3845..4258
                     /locus_tag="PXD41_001410"
     CDS             3845..4258
                     /locus_tag="PXD41_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6288937.1"
                     /translation="MGSFHAQIARFVEQTQQKADRALRVIALQTLSGVQKKSPVDTGQ
                     LRRSWTVALNGFPSSYNGSQTVLNSAKFGDMIVIATNKPYAPMLEYGLYPNPPKKPTG
                     KTKNGYSIQAPNGMVRITVQEMQAFIRNNPQLGVS"
     gene            4258..4650
                     /locus_tag="PXD41_001411"
     CDS             4258..4650
                     /locus_tag="PXD41_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288938.1"
                     /translation="MRPIIRSVLEQHLAELNPFNTVWEGIIDSPKLPYQTVSMTTSTN
                     ETATIGNTPKAKQSGFLQVTLYYPLDQGTKAIEERADEIFRHFFGQVWIEENVQILVQ
                     QPPLVASLYRLDNSIALPITIYFTAYEL"
     gene            4660..5682
                     /locus_tag="PXD41_001412"
     CDS             4660..5682
                     /locus_tag="PXD41_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288939.1"
                     /translation="MSILGNSQGTKRTVVFAKESSFGTKAAPTGAKIMPRVETSLNTN
                     FESYQSEEIRDDLQRSASVIGFEKVEGDIKGELAAGQWAAFFAAALRGSFTAQAKKPI
                     ITKTTDGTGEKNGKILIVPKTSHTSDSFTLEDVFKDINVSRQYLGCRVSKLSLDVQPN
                     GIASITVSFLGQRGEESTTAYFTNPTDLTQSGKLAGVKGSLQVNKRPVGLVTAFKLDI
                     DLGASSEPVLGAKYAPDVFIGTVAVSGSFTMYFQDKTMIDAVRNGTDLSLALRMDAEE
                     RTNTDYLTIILPGVKVTSNELDDGAKNIMQTLNFDAFPAVWDSASQIDNVLKVATTMI
                     VQDSLA"
     gene            5772..6173
                     /locus_tag="PXD41_001413"
     CDS             5772..6173
                     /locus_tag="PXD41_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288940.1"
                     /translation="MNLNALSKEKQLAEHRFELVHPVSGEPLGVFMSVVSAKSDKAQR
                     FAEKQLRQEQMRELENAKSRKPKFKGLGDMIAESRAMAIDRLTGWENVEWNEKPLEFS
                     DQNAELLLTECDWIVEQIFEHSNDLGKFLKS"
     gene            6188..6514
                     /locus_tag="PXD41_001414"
     CDS             6188..6514
                     /locus_tag="PXD41_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288941.1"
                     /translation="MYAEKTFKLDKKLKGSESTLREHLQAIEMQTGITPEELHNPEPS
                     PAVAYLLGWFFELAMSRQSGMSLNPISYTEIDAWSRLFARHLEQWEISVIKQLDMIYL
                     NVQQTE"
     gene            6516..6839
                     /locus_tag="PXD41_001415"
     CDS             6516..6839
                     /locus_tag="PXD41_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6288942.1"
                     /translation="MDTFNFQPNWGLNVQRKPEVMKIAFGDGYEQVAPKGLNHNLRTY
                     SAVFTGTEARIKQIEAFFERQGGYKAFLWTPYGGKEGKFRCEEWEVSISSGKWTLSAT
                     IREVL"
     gene            6926..7618
                     /locus_tag="PXD41_001416"
     CDS             6926..7618
                     /locus_tag="PXD41_001416"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288943.1"
                     /translation="MKKIFVSALLLTCSLSALGNSSYELIIDSMQDLEKHKPEILSIP
                     EADRNTFIRYMMRKELRIKLNQGRLADGLTVREAIQNQQAFEKDRNSKMQQEKQKKET
                     EKAEKEKAVTDFNQKFELSITGARKAKNALNQDILLVSLSLKNNSDKPIIAVQPDIQF
                     VLGEDKQTISSMRPKKFENGIPPNGSEIFEFGFDLDDMFALKAEKNIEKLRAVFQTAE
                     VLFADGTTEKLQ"
     gene            7682..8506
                     /locus_tag="PXD41_001417"
                     /pseudo
     CDS             7682..8506
                     /locus_tag="PXD41_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015691083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
     gene            10550..10708
                     /locus_tag="PXD41_001418"
                     /pseudo
     CDS             10550..10708
                     /locus_tag="PXD41_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            10716..>11221
                     /locus_tag="PXD41_001419"
     CDS             10716..>11221
                     /locus_tag="PXD41_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6288944.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRNLKDKSGNAGRVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITSIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNA"
BASE COUNT         3531 a         2201 c         2637 g         2852 t
ORIGIN      
        1 aacggtaaat tgcacgagct ctatgaaaaa ttcagagatc tgaatatacc tcttgcaaaa
       61 aaatcagaaa ttttacttga aatgcagaag ttaagtgcta atctaaaaga gccaaagaac
      121 attgatttaa tcaaggagaa aaaataatgt atcagtatta tttagctcaa gttggcaatg
      181 aacagcaaaa acttattcgt ggtatgcctg acaatctact tagtttctcg gtttatgagc
      241 ctgaacaaga agattgggat aataagttcg gcccattttg ggcagacaag atcttgataa
      301 gcggatttga cgcttacgag gaaatttcag aaaaggaagc aatccgattt atcaaggtac
      361 attaaatgtg tcaagctgaa caattcgctc gccaactgca ttatggacaa acagataaag
      421 ctggaaagcc atacattgag catcttgctt ttgttgcaga aaacattagc acaaaaaatg
      481 aagagacaga agcagtagct tggttgcacg acagtgtaga agatactcag tgttcaatta
      541 atgatattcg tcatatattt ggcgatgtta ttgctgatgc agttgaggct attactaaaa
      601 agcaaggcga aagttatttt tgctacttgg atagagtaaa atcaaatcct attgctaagg
      661 tggttaagtt agctgatttg actcataatc tttgccttga gcgattgccc aagatcactg
      721 aaaaggatct taaacgagca gaaaaataca aatcagcatt ggaatatcta caagcctagc
      781 ctaaaacgct aggctttttt atcgcaattt tttaccccaa actgaccgtt tgtgagccat
      841 cacaggcggt tttttattat cgggcggaag cccaccagca atgagaggaa gctcaaatga
      901 aattaaaatt agacgaaaac ggacatgtag tagttgaaaa tggtatgcct gtgtatattc
      961 acgatgacgg aaaggaaatt ccgttcgatg cactaaaggc gacacagaaa atcacacaac
     1021 tgaacgctga ggcaaagcaa catcgagaag ctaaagagaa agcggaagcc gacttaaaag
     1081 cattctcagg gattgacgat ccgaaagctg cactcgaggc attaaagacg gttgccaatt
     1141 tagatgctaa aaagctgatt gatgccggtg atgcggaaaa agtcaaagcg gaaatcatca
     1201 aaggttacga tgagaaatta gctgtggcaa ccgctcaagc cgaaaaactg caacagcagt
     1261 tacacgctga attaatcggt ggttcgtttg ctcggtctaa atacgctcaa gaacacttga
     1321 atattccgtc tgatgtcgta caggcattct tcggtaagca ttttagtatt tcggatgacg
     1381 gcaaagtggt agctaaattt gctgacgggg gcgaaatctt tagtcgcacc cgcccgggcg
     1441 aaaaagcaga ttttgaagag gcattagaag ctttagtaag tgcttatcca aataaagacg
     1501 ctattttaaa accaagtggt tcaagtgggg caggagcagg tggcggatca cgcagttcat
     1561 ctatgccgaa aacattatcg gactgcaaaa cagatgaaga gcgtatcgct tatcttcaag
     1621 caaattcgta aggtgcaaga ggttgcacct tttttatttt cggtgcaatc gcaccacttt
     1681 ttagaggaaa atcaaaatgg catttgacct acaggttttt aacaaacaaa cgcaattagc
     1741 cttgaccgaa actgtcgatc aggctattga aaaattcaat gcagcatcag gcggtgcaat
     1801 cattttacag aacaagccag ctgaaggtga ttttgatatc cgtgctagct ttaaaggtat
     1861 tgccggttta gttcgccgcc gtaatgtgta cggtacaggt acggtagatg caaaacgttt
     1921 agagcaatta ctggacgtag cagttaaagt ggcggcaggt acagcaccga ttgaatacca
     1981 gccgagtcaa tataaatgga ttttattaaa tcctgaattg gcggcgattg aaatcggcac
     2041 acaacttgcc aaagcccgtg ttgctgatat gctcaatacg gctattgccg gcacggttgc
     2101 tgcaattagt ggcaatacag caatgacact tgatgaaaag accgccgctc cgacattccg
     2161 cattttaaac aaaggtgcag cgaaaatggg tgatcgtgcc ggttcgctta aagcgtgggt
     2221 gttgcactcc acaaccttac acggcttata cgataatgcc ttaaccaatg cggaaaactt
     2281 attcaagtac gaaaacgtga acgtaattcg tgacccgttt gggcgtgtat ttgtcgtcac
     2341 agacagcccg gctttaatgg cttcagacgg tacatttaac accttaggct tggttgaaaa
     2401 tgcggtggta gtttccggca acaatgactt tgacagcgtg ttagtgccga aaaccggcgg
     2461 agaaaacctt tcagcagttt accaagctga atggacctat aacttaggaa tcctaggtta
     2521 taaatgggat atgaccgctg gtggtaaatc accgaacgat accgccctag gcacaccgac
     2581 gaactgggat aaatcggtta cctccaacaa agacaccgcc ggtgtattgg taaaaacgaa
     2641 gtaattttta accgcttgta gataaggttt acaagcggtt gtttttttat ctggagtttg
     2701 caaatgaaac gaatacttta ttttacaacg gatttttcgg caaaaaacat tgcctttgcc
     2761 aaagctcacg gtgtattaat gcggaatctg aacgcttacc acccatcaga caccttagaa
     2821 aatgcagatg cagtgtgcgg taacgtacct caagcttatc aacatttacc gttgtttgaa
     2881 ttgcctgagt ctaaccaaaa atcaggtcaa gatttgaaaa ccttaaaaac cgaagaaatt
     2941 aaggaaaaac tgactgaatt aggtattgct tttgaggcga atgccaaaaa agaaacatta
     3001 ctaaccttac tcactcaggc ggtgggacgt gacggaacaa acgatgctaa atagttatat
     3061 gacggttgag caagccaacg cctatcacga catcagaatg agccgtgagg cgtggaatgc
     3121 gttaagcgat caagaaaaac agcaacgatt ggtgtcagcg tctgattttc tggatttcaa
     3181 ttatcgtttt tcaggcgaaa aagcagatct tactcaagag cgtgaatttc cacgcaaggg
     3241 ttttgaagct atcggtattc ctaaagccgt gcaatttgcg gtatgtgagt tggcattgca
     3301 agataacttg accgcaaatc aagaagctca aatgagtagc gtaagagttg gcccggtttc
     3361 agttaattat gataacagtt caccgcaaaa cagcgtgaat cggtttgagt atgtgaggca
     3421 gttgctttcc acttggttag atcgatcttc tttcggcacg gttaagttgg agcgtagttg
     3481 atggcggatt tttacggcaa tttagggaaa atctcccatt ctttgattaa gcaattcggg
     3541 cagccttgta gtgtaacaat taacgaacaa ggcagataca accctgcaac cggtgagcgg
     3601 aaaaaaggta gctcaacggt tcacgcaggc tattgtctgt ttgataattt ggcgtttgat
     3661 ttccgcaatc agcaatctgt cagcgttcaa caaggcgatg tgatgattta tctcactgcc
     3721 gattgcaaac cggtattaaa tgctgtgatt gaagcaaacg gcgaaaaatg gtcggtcatc
     3781 aacgtccagc ctatacgccc agcagctacc acgatgattt atcaagtaca agggagaaaa
     3841 gccgatgggt agttttcacg ctcaaatcgc ccgttttgtg gaacaaacgc aacaaaaagc
     3901 ggatagggcg ttaagggtaa ttgccctgca aaccttaagt ggggtgcaga agaaatcgcc
     3961 tgtcgatacc ggacaacttc ggcgtagctg gacggtggca ttaaatggtt tcccgagcag
     4021 ttataacggc agtcaaaccg tgctgaatag tgctaaattc ggcgatatga ttgtgattgc
     4081 taccaataaa ccttatgcac caatgctcga atatgggctt tacccgaacc caccaaaaaa
     4141 accgaccggc aagaccaaaa acggttattc aatacaagca cctaatggaa tggtgcgaat
     4201 taccgtgcag gaaatgcaag cctttatccg caataatcca caattaggag taagctgatg
     4261 cgaccgatta tccgctcggt attagagcaa catcttgccg aactcaatcc gtttaatacg
     4321 gtttgggagg gcatcatcga cagcccgaaa ctgccgtatc aaaccgtatc aatgacgact
     4381 tcaaccaacg aaaccgccac gattggtaat acgccgaaag ccaaacagag cggttttttg
     4441 caggtcacgc tttactatcc gctagatcag gggacaaagg cgattgagga acgagccgat
     4501 gagatcttcc gccacttttt cgggcaggtc tggattgagg aaaatgtgca aattctggtg
     4561 caacagccac cgcttgtagc ctcactttat cgactggata acagcattgc cttacccatc
     4621 accatctatt ttaccgctta tgaactatag gagaacccaa tgtctattct aggcaattca
     4681 caaggcacaa aacgtacggt cgtttttgcc aaagagagtt ctttcggcac gaaagctgct
     4741 ccgacaggcg caaaaattat gcctcgtgtt gaaacctcac tcaataccaa ttttgaaagt
     4801 tatcaatcgg aagagatcag agatgattta caacgctccg cctctgtgat cggctttgaa
     4861 aaggtcgaag gcgatattaa aggcgaacta gccgccggac aatgggcggc attttttgcg
     4921 gctgcattac gtggttcatt taccgctcag gcgaaaaagc cgattattac caaaaccaca
     4981 gacggcaccg gcgagaaaaa cggtaaaatt ttgattgtgc cgaaaaccag ccacacctcc
     5041 gacagtttca cgctggaaga tgtcttcaaa gacatcaacg tcagccgcca gtatttggga
     5101 tgtcgtgtat cgaaactcag ccttgatgtg caaccaaacg gtattgcctc gattacagtc
     5161 tcatttttag ggcaacgagg cgaagaaagt acaacagcct attttaccaa tcccaccgat
     5221 ttaacccaat ccggcaagct ggcaggggta aaaggctcat tgcaggtcaa taaacgccca
     5281 gtcgggttag tgacggcctt taaactggac attgatttag gggcaagcag tgagccggta
     5341 ttaggggcaa aatacgcccc tgatgtcttt atcggtacag tggcagtgag cggatcgttt
     5401 acgatgtact tccaagacaa gacgatgatt gatgcggtgc gtaacggcac agatttatcc
     5461 cttgctttgc ggatggatgc cgaagagcgt accaataccg actatttaac cattatctta
     5521 ccgggtgtca aagtgacctc aaacgagttg gacgatgggg cgaaaaacat tatgcagaca
     5581 ctcaattttg acgcattccc tgcggtatgg gattcagcaa gccaaatcga caacgtgcta
     5641 aaagtcgcca ccacaatgat tgtgcaagac agcctcgctt aatcgaaatt ttgcaaaaaa
     5701 ataaccgtat ctaaccgctt gccctcaaac aagcggtctt ttttatcccc aatttacaaa
     5761 aggaaaccca aatgaattta aacgcattaa gtaaagaaaa acagttagcc gaacaccgtt
     5821 ttgagctggt tcaccctgtt agtggcgaac cgctcggcgt gtttatgagc gtcgtgagtg
     5881 ctaagagtga taaggctcaa cgctttgccg aaaaacaatt acgccaagaa cagatgagag
     5941 agctggaaaa tgccaaatcc cgcaagccga aattcaaagg cttaggcgat atgattgccg
     6001 aaagtcgtgc aatggcgatt gaccgcttaa ccggctggga gaatgtcgaa tggaacgaaa
     6061 aaccgttgga gttttccgac cagaatgcgg agctactttt aaccgaatgt gattggattg
     6121 tggagcaaat ctttgagcat tcgaacgatc tgggaaagtt cttgaagagc taattgatga
     6181 tttacaggtg tatgcagaga aaacgtttaa gttggataaa aaacttaaag gcagcgaaag
     6241 taccttgcga gagcatttgc aggcaatcga aatgcaaact ggcattacac cagaagaatt
     6301 gcataaccct gaacccagtc cagcggtggc ctatctgctg ggctggttct tcgagttggc
     6361 aatgagccga caatcgggta tgagcttaaa cccaattagc tacactgaaa ttgatgcgtg
     6421 gagcaggctt tttgctcgtc atctcgaaca atgggagatc agcgtaatta agcagcttga
     6481 tatgatttac ttgaacgtac aacaaacgga gtagtatgga tactttcaac tttcagccca
     6541 attgggggct taacgtacag agaaagccag aagtgatgaa aatcgccttt ggtgacggtt
     6601 acgaacaagt cgcccctaaa gggttaaacc ataatctccg cacttattcc gctgttttca
     6661 ccggcacaga agcacggatt aaacagattg aggcattttt tgaacgacaa ggcggctata
     6721 aggcttttct ttggacacct tacggcggga aagaggggaa attccgctgt gaagagtggg
     6781 aggtaagcat aagcagcggg aaatggacgc tgtcggcgac gataagagaa gtgttgtagt
     6841 tttttctgat tttgtgaact ggttcacact ctgtgggttg gatataggtt agaatttaag
     6901 tctaatttgc ttaacggagt cttttatgaa aaaaattttt gtttcagcct tattgctcac
     6961 ttgctcgtta tctgcacttg gaaattcctc gtatgagttg attattgact caatgcaaga
     7021 tcttgaaaag cataaacccg aaattctatc tataccagaa gcggatagaa atacttttat
     7081 tcgttatatg atgcgaaaag aactgcggat aaagttaaat caaggcagat tagcggatgg
     7141 tctaactgtg agagaagcta ttcaaaatca acaggcattt gaaaaagata gaaatagcaa
     7201 aatgcagcag gagaagcaaa aaaaagaaac agagaaagca gaaaaagaaa aagctgttac
     7261 ggattttaac caaaaatttg agctatccat tacaggggcg agaaaggcaa aaaatgcact
     7321 aaatcaagat attttgcttg tttcattaag tctaaaaaat aactcagata agccaattat
     7381 cgctgtacaa ccggatattc aatttgtact gggtgaagat aaacaaacta tttcatccat
     7441 gcgtccaaaa aaatttgaaa acggcattcc gcctaatggc tcagagattt ttgagtttgg
     7501 gtttgattta gatgatatgt ttgctttgaa agcagaaaaa aatatagaga aattgagggc
     7561 agtcttccaa acagcagaag ttctttttgc tgatggaaca actgaaaaac ttcaatagta
     7621 attggtaaat cttcattggc cgcttgtaga aatacaggcg gtttttttat tggagcaagc
     7681 tatggcagat ttagcaacac tggcgattaa aatcgaaaca gaaggcgcaa gccgagcaag
     7741 tgcagatcta agtaaggtcg agcaatctgc aaagaacaca gagaaagccg cagataatct
     7801 gacgcgcgca atgggaaatt tgaagcggat tttagcgatt gcagggctgg ctggtgggtt
     7861 atccgcttac ctagatatgg ctgaaagaat gcagtcgtta aacgcacagc ttaaatttgt
     7921 tactaactct caatacgaat tcaatagcgc acaaaaagag ctttttgcga ttgcgcagaa
     7981 tacgcgcgct agtttggaaa gcaccacgca actttatatt aaatcttctc aggcactgaa
     8041 agattacggc tacgcgcaaa aggatattct cacatttacc gaaaccatta acaaagcaat
     8101 ggcagttggc ggggttaagc cacaagagca agctagtgct ttactccaat tatcacaggc
     8161 attaggttca gggaaactgc aaggagatga attccgttca atttcagaag ctgcaccgat
     8221 tattttagat acgcttgccg agtatatggg taaaagtcgc gatgaagtaa gaaaactcgc
     8281 atccgagggt aagctcaccg cagacttact gttcaatgcg tttaacggtt caagcgctaa
     8341 aattaccgaa aaatttaatc aaatgccgct aacatttggc ggtgcaatgc agcagttgca
     8401 gaatgccaca ttgaaattta tcggtgacct agatagtgca aatggcttga gtggaatgtt
     8461 agctcaagcc attagttttt tagcacagaa ttttgatgtg ttaggcaagg ctttgattta
     8521 tgcaaccggt gcttatattg cgtttaatgc agttgccttt gctcagaatt ttgcaaaagc
     8581 aaccggtggt gtcggtttat taagtagtgc atttggttat ttgactacga tgatccgagg
     8641 tgcaactgtt gcaatgatgg ctaatcctat cgagctttta acaactgcaa ttattggggc
     8701 tgcttttgta tttgatgctt ttatcagtga tatagaggta ggtgcagcaa cctttgatgc
     8761 gacttgggga gatgttgcga cagctgtgtg ggatgatttt aaagatttaa cttcagatgc
     8821 ggcagattgg ttagtcactc aatgggataa agcaaccgcc agtgcagcga gttcgttcag
     8881 ttccttaggt gttgatattg gctcagtatg ggagacggtg caatccatta cgaaaacatt
     8941 gatcaatagt attattggtc tgtttgttgg agcttatcaa gccatcgtgc ttgcttggaa
     9001 taattttcct gccacaatgg aaaacttggg tgtgatggcg gtaaatgctc ttgtcgattt
     9061 ggttcaaaaa ggcatcaata gcattattca gcttatcaaa ttaccgattg agcttttaaa
     9121 cagagcctca tctacttttg gtggaggaaa tctgattgat acatcaggtt ggaaggcaag
     9181 cttagatgat tttaaactaa aggcaagccg cgaggcagaa gttgttggtc aatcaattag
     9241 ccaagcattt gcggatagta tcaccacaga ttacataggc aatgcagtta attcagtgag
     9301 tgactatatt gatggagcgg cagttcgtgg gcgcttaaaa cgtcaattag atgaaaccgc
     9361 ctctgacgat caaggtacgc agtcaccagc taaaaaaaca ttagctggaa ataataactc
     9421 tgctagtgac tggaaaaact acctcaatga acttgaacga gccaatgccg atggattagc
     9481 ccgtattgca cttgagcaag atcgctcaat gcgtgaaatg ttggaaaagg cgaagaaagc
     9541 cggtgcaagt cacgctgaaa ttgaaaaagc caaaatgctg attacagaac gttatgctaa
     9601 agagcgaatg gaaattgccg agaagtatgt gccgagtctg aagtttgagg aagaactcaa
     9661 agatcagatt aaggaaattg atgaactgca aaagttaaac ctgattacca ccgagcaagc
     9721 aggtcttgcg aaagaggcgt tagcaggcaa atatcagccg gtagttgaaa tccaacagca
     9781 atacatcaat caactgagag agattgaagc attaaaacaa gccggtgtat taagcaaacc
     9841 tcaagcagaa gtagcggccg aaaaagccaa atgggacgcc ggcacacaaa aagccaaaat
     9901 cgcaggtaaa aacgccgtta gcccttatga aaaatggaaa tcggaatttg acccaatgca
     9961 ggcaattcaa aatgagcaag cctcaaagtt ggcagaagtg caatcgatgt acgatcagca
    10021 tttgatccaa tatgaggatt ttatcaacgc taaagcacaa attgatgcta aggcgactgc
    10081 tgatactcat caactgttta tgaacagtat tagtgggttt ggttcggcga tagatacgat
    10141 gttaggcgtg atgaaaaacg cagggcaaga gcaatcaggt atttaccgca cgatgtttgc
    10201 gatgtcgaaa gcgtttgcta ttgcggaatc aattctgaac ttgaatcgtg caattactca
    10261 agcaatgagc gatcaaacag ctattacacc ggctcaaaaa tttgcaaata tggcggctat
    10321 tgctagtgcc ggggcgagct tgatttctaa tatccagtca gtctcattag gcggtatggc
    10381 tcacagcggt attgacaatg tgccgaaaga aggcacttgg ttgctggata aaggtgagcg
    10441 tgtagtggat agtcgtacta accaagactt aaaaaccttt ttatccaatg ctaatcgtgg
    10501 cggtgcaagt ggtcaaagat cggcgataaa tgtcaaaatt attaataacg ggcaacccgt
    10561 agaggcgaaa gtcagcagtg aagagactgt agatggcaat atccaaatga cggtggaact
    10621 gctgaagaaa atggatcaaa tcgccgatca acgctaccgt agaaatcagt taaatgattt
    10681 aagaacaggt ggaacattat ctaaataggt gaagtatgcc aattagtatt tctaaccaaa
    10741 tgaaactaga tcttgccaaa cttgagcaaa atgcaatgct ggacttgtac gaggttgatt
    10801 tgcgcaatct caaagataaa agtggtaatg ctggcagagt ttaccgcttt tattctgggc
    10861 taaatgaact caaaacaagt atcgtctggc aagggcggac ttacgatccg tatcctattg
    10921 aggcaagtgg atttgaacga aacagtagcg gcccgagcaa tcgcccgact ctcacgctat
    10981 caaatctgtt tggtttaatt accagtattg cgaatcagtt tgacgaatgt atcggtgcga
    11041 ttgtccgccg gcatcaggtt tatgctcaat atttagatgc cgtgaatttt gccgggggta
    11101 atgcgaaagc tgatccaaat caggaaataa tcagtcattt tgtgattgag cagcttacca
    11161 gcctcacccg agaaacggcg acctttacgc tggcattacc gattgaaacc gataatgcca
    11221 a
//
LOCUS       DANLXB010000081        11220 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLXB010000081 DANLXB010000000
VERSION     DANLXB010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11220
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            130..1926
                     /locus_tag="PXD41_001420"
     CDS             130..1926
                     /locus_tag="PXD41_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL6288945.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            2006..3067
                     /locus_tag="PXD41_001421"
     CDS             2006..3067
                     /locus_tag="PXD41_001421"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6288946.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3055..3519
                     /locus_tag="PXD41_001422"
     CDS             3055..3519
                     /locus_tag="PXD41_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6288947.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3550..3666
                     /locus_tag="PXD41_001423"
     CDS             3550..3666
                     /locus_tag="PXD41_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL6288948.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3682..4149
                     /locus_tag="PXD41_001424"
     CDS             3682..4149
                     /locus_tag="PXD41_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6288949.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4204..4884
                     /locus_tag="PXD41_001425"
     CDS             4204..4884
                     /locus_tag="PXD41_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL6288950.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4952..6094)
                     /locus_tag="PXD41_001426"
     CDS             complement(4952..6094)
                     /locus_tag="PXD41_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL6288951.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6104..7483)
                     /locus_tag="PXD41_001427"
     CDS             complement(6104..7483)
                     /locus_tag="PXD41_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6288952.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7605..8699)
                     /locus_tag="PXD41_001428"
     CDS             complement(7605..8699)
                     /locus_tag="PXD41_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6288953.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8803..9255)
                     /locus_tag="PXD41_001429"
     CDS             complement(8803..9255)
                     /locus_tag="PXD41_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL6288954.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9276..10028)
                     /locus_tag="PXD41_001430"
     CDS             complement(9276..10028)
                     /locus_tag="PXD41_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL6288955.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10039..11199)
                     /locus_tag="PXD41_001431"
     CDS             complement(10039..11199)
                     /locus_tag="PXD41_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL6288956.1"
                     /translation="MISPHFPTNFETFAIRLREAGFNTLGIADAPYESLSENLRHSLT
                     EYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFNVFGYKSDD
                     MLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNSGVGASDTY
                     KIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSLEYSEAVLD
                     TVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKKEELLPLEI
                     NCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRKANQNYVNS
                     IEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQAKQ"
BASE COUNT         3226 a         2585 c         2351 g         3058 t
ORIGIN      
        1 taaaatgtga tctcgctcac aaataattaa aaataatctt ttttaatctt tttctagcgt
       61 ttatcattaa ttccgacaac ttctctggag ttttttagtt ctattaatct ctcaacaaag
      121 aggcccccta tggacttttt aaccgaaatt ctccttttct taaaggatca agtgctgaat
      181 aaagcaccct tcttactagg tatcgtagct tgcttaggtt acattcttct taaaaaagac
      241 acttctacga ttattaaagg cacaattaaa acaattgtcg gttttatgat tgtacaagcc
      301 ggttcaggtt tcttagtaac caactttaag ccggttattg atggcttagc caaatatcac
      361 caacttaccg gtgcagtaat tgacccttac accagtatgc aatcgaccat tcaaaccatg
      421 ggcgagaact acgcttgggt tggttatgcc gtaattgggg cgctgttcct caatattcta
      481 ttagtggtgt tccgccgttt aaccggtatc cgtaccatta tgctcaccgg tcacattatg
      541 ttccaacaag caggcttggt tgcggtgttc tatatgatca tcggagcgtc aatgtgggag
      601 accattatct acacctcagt gttgatggct ctttattggg gtatttcgtc taatattatg
      661 tataaaccaa cccaagcggt aacaggcggt gcaggcttct caattggtca ccaacaacaa
      721 attgcttctt ggattgcagt caaactcgca ccaaaacttg gcgataaaga cgatactgta
      781 gataaaatga aattgcctaa ctggctcaat attttccacg acagtatttc tgcaaccgca
      841 ttagtaatga ccatcttctt tggaatcatc ttactttcat tcggtttaga taacctcaaa
      901 gaacttgctg gcaaaaccaa ccagtttatg tacattcttg aaatgggctt gaaatttgcg
      961 gtggcaattc aaatcattgt aaccggcgta cgtatgtttg tagctgagct ttcagaagcc
     1021 ttcaaaggta ttgctgaacg cttaattcca aactcagtat tagcgattga ctgtgccgct
     1081 atctacgctt tctcgccaaa tgcgatggta ttcggcttta tgtggggggc tatcggtcaa
     1141 tttgtggcag taggcggctt gcttgcagta ggctcaccgg tgcttattat tccgggcttt
     1201 atcccgatgt tcttctctaa cgcaaccatt ggtgtgtttg caaaccaatt tggtggttgg
     1261 aaagcagtaa tgaaaatctg ttttgtgatg ggtattattg aagtgcttgg ctcagcttgg
     1321 gttattcaaa tgcttgcttc acaaggcaca acctttaacg gttggatggg tatggctgac
     1381 tgggcattgt tcttcccacc aatcctacaa ggtattatca gcattccggg cttcttcttt
     1441 gtaattgtgg cagcagcaat ggtttatatg ttcttcgcat ctaaacaact tcgtgccgaa
     1501 gaagcagaag cggcagctcg tggcattaca cttgaacaat tagacggcta cggcttagat
     1561 gaagtaaaag cagaaccaaa agcggaggca gtagtacaac aagcggtcga aaatgccgaa
     1621 aattctgcaa acccaatccg cattctagcg gtgtgtggct ctggtcaagg ctcatcaatg
     1681 atgatgaaaa tgaagatcaa aggctatctc gacaaacgtg gtattccgaa tattatggat
     1741 tcctgtgcgg taactgatta caaaggcaaa ttaagcgagg ttgatattat tgtctccagc
     1801 aaacatttag ccaacgaaat cgaagtaccg gaaggcaaag cggtattagg tgtacaaaat
     1861 atgctaaatc caaactcatt tggtgatgaa ttagttgagc taatcaatca gcataatgca
     1921 aaataagtaa gtttaggggt gaataatcac ccctatctat gctaaagatt gtaaaaactc
     1981 acttcatcaa acgaggaatt atccaatgaa aaaaatctta tccaccctgt ttatgctctc
     2041 cgcggttagc gttgccgttg ccaaagaggt aaacattaaa ctacttggta cctcagacgt
     2101 tcacggacgt gttgtgccgt ggagctacgg ggcagacgtg gaagacaaat ccggctcatt
     2161 cgcccaaatt gcaacctatg tcaaagaggt gcgtgccaac cacaaaaatg tgttgctgtt
     2221 tgatattggc gatgcgattc aagacaacca agtcgaagag ttcgctaaaa ccttagacaa
     2281 agcgaaaaac aatcccgtgc cgaaagtgct gaatgcaatg aattacgaca tcttcattct
     2341 cggcaaccac gaatttaact tcggaatgcc gaatttagat gcgattttaa aagacatcaa
     2401 cgccaaaatt ctcactgcca acttctatca caaagacggc aaacgctacg ttgagccaac
     2461 taccatcatt gaacgtgatg gcgtaaaact tgggattatc ggcttaacca ccccaatgtc
     2521 ggctattttt gaaaaagaca ccggtcattt agacgcaatg aagttcactt cgccgattga
     2581 agaggcgaaa gcccaaattg ccgatctcaa agccaaaggc gtggacgcca ttattgtgct
     2641 ggcacatatg gggattgaga acgaaaacaa cattcccgac accggcgtgg cggatttagt
     2701 gaatgcagtg gacggtattg atgtaattat cgccggccat atgcataaag atgtgccgag
     2761 tgaaactatc aaaaataccc tgattaccga accgcaccgc tacggcacag tggtttccga
     2821 agttgatctt gcctttgatg tgaatgacaa aggcgaagtg aaactacttt ctaaaaccgc
     2881 caaaaccgta ccggtgaaga aactcgcaag cgatccggaa atcgaaaaaa tttaccaacc
     2941 gtatcacaat gaactgcgtg ccttaaacaa cgtcaaaatc ggtgaaactg cacaagattt
     3001 aatcccacaa ggcaaaatca cggtgtatcg attgctttct cgcaagacac cggaatgtcc
     3061 tcattgatcc acgatgtgca acaacattac agcggtgcag acgtagtgag ttttgcattt
     3121 gactacgaaa ccgtgcgttt agacaaaggc gacatcaaga aaaaagacat catctacaac
     3181 taccgctatg ccggtggcga tgtgagcatg tatgagctaa ccggcaaaca gcttaaacag
     3241 tatatggaat ggtcagcgga ttacttcgac accattcaag ccggtgacaa agactaccgc
     3301 tacaacgctg tgcggggtaa atctaaatac gttaccttcg acctattcgg cggcgtaagc
     3361 tacaacatcg acctacgcaa tccaagcggt agcaaaattg tcgatctaaa actggcaaac
     3421 ggcagtctaa tcaccgatga cggcaaatac aaagtgggaa tgaactccta ccgctttggt
     3481 cagctcacca aaaaaggcgg catctgggaa ggacagtaaa tccccgtgat ttgggaatcc
     3541 aaagtcgcca tgggggctga aaaaggcaca atccaaaata tgctgattga ttacatcacc
     3601 aacgtcaaag gcggaaaaat cgaaggcaaa tcgcataacc gctgggcgat tatcggctta
     3661 aattaacgaa agggaaacac tatgaactta aaacaatctc ttattgaaaa taactctatt
     3721 ttgctcaatc aatcagcggc gaattgggaa gacgcaatca aaatcggcac tgatttatta
     3781 gtcaaagccg gtacgattga accacgctat tacgataata ttgtaagcaa aatcaaagag
     3841 atggggcctt atattattct tgcaccgggc ttggcaatgc ctcacgcccg tccggaagaa
     3901 ggtgtgatta aaacctcttt cgctttagtg acttttgaca ccccgattta ttttgagggc
     3961 gaagatgagc cggttcacgt tatgctaacc cttgcaggga gtgactctga tcagcatatg
     4021 caaggcttgg tagaaatcac ccaagtgcta gatgacccag agagcgacac aggtgttgat
     4081 ttagataaaa tccgccgctg taaaacggct gaagaagtgt atgcagtaat cgatcaggca
     4141 ttagcctaat attctacaag cggttcaaaa acatcaatat tttgcaaata gaggaataca
     4201 attatgtcca aaccattatt acaaattgcc cttgattctc tttcactgga aaaagcggtg
     4261 gcggatgcaa aacaagcaga aaaccaagtc gaaattattg aatgcggtac tattcttgct
     4321 tttgctgagg gtatgaaagc cgtttccacc ttgcgtgtat tgcacccaaa tcacattatt
     4381 gtgtgcgact taaaaaccac cgatggcggt gcaattttag ctaaaatggc atttgaagcc
     4441 ggtgccgact ggctcacggt ttcggctgcg gctcaccctg caaccaaagc ggcttgcaaa
     4501 aaagtggcgg acgaatttaa cgctgctcac ccggagctaa aagtgaaaaa agagattcaa
     4561 attgaaatct acggcaactg gacggtggaa aaagatgcca aagagtgggt agaattaggg
     4621 gtaacccaag cgatttacca ccgctcccgt gatgcggaac tagcaggtaa aggttggaca
     4681 acggaagatg ttgagttaat gaaacagctt tctgacttag gcattgaatt atctatcacc
     4741 ggcggtatcg taccggaaga tattcacctg ttcaaagaga tcaaaaacgc caaagccttt
     4801 attgcaggcc gtgctttagt cggtgaaaaa ggcaaacaaa ctgccgaagc cattcgtgtg
     4861 gagattgata aatactggaa ctaatccggc attgaaaccc aataaaaatg gcgttctctc
     4921 aaccggaacg ccatttttta tctcattttt tctattcttg caaggccgat attttccaca
     4981 atctcgctac attttcggca gttgaaatca ggttctcttt gcctgatttt aacaccgctt
     5041 ctaaattgct gacctgtcga ataatcggaa ataccgcatc aatgccgtgt tggtacacca
     5101 cagggtaatc ttctttcaat gagccaacta tcgcaatcac cggcttgcca aactgcttag
     5161 cgactttcgc caccccaatc ggggttttac cggcgataga ttgagcgtcc attcgccctt
     5221 cccctgtcac caccaaatcc gcatcggcaa gtttctcagc aagatcggtt gcctcaagaa
     5281 taatttgcac gccggaacgt aatgttacgt taggcagtag cagtaaacca ccgcccattc
     5341 caccggctgc accggcaccg gctttctcgg caatctcaat gcctaattgg gattttacgg
     5401 tttcggcaaa atgcaacagg gcgtggtcga gcattttaac catttccggt gtagctcctt
     5461 tctgtggccc aaaaattgcc gaagcccctc gctcgccaca cagcggatta tcgacatcgc
     5521 aagcaacctc aaattccact tgctttaagc gtgaatccaa accgcttaaa tcaatctgct
     5581 gaatttggct taatgcctcg ccaccaaagc cgatttcccg ctgttcggca tttagaaatt
     5641 tcgctcctaa ggcttgtagc attccgacac cgccatcgtt agtcgcactg ccgccaatgc
     5701 cgagaatgat tttttccacc cctaaatcta aggcggcttt aattaactgc cccgtgccgt
     5761 agctggtggt aaccagcgga tttcgttgct ccattggcac taaatgcaag ccacttgccg
     5821 ccgccatttc aataaaggcg gttttttgat cccccgacaa gccaaaaaag ccctccacct
     5881 catttgcaag cggtgcaatt acgctgattt tttgcaaact gccgtgagtg gcatcaacca
     5941 gcgactgtac cgagccttcg ccaccgtctg ccatcggtac gagctgatac tccgcctcag
     6001 ggaaaacacg ggcaaaaccc tgttgaattg cttgagccac ttctaatgcg gtcaaactct
     6061 ctttaaatga atccggtgca atcacaattt tcatcgtcaa tccttagagt aaaatcaatg
     6121 aaagcagata aaccgtgagc atacccacca cacccataat gaaagttagg gtagtttgcg
     6181 tacgatagcc ttgttgcgga gtcagtttag taaagtttgt taccacccag tagtagctgt
     6241 cattggcgtg ggaaacgcac attgagccag ccgcaatcgc cattacggtt aaggctgccg
     6301 ccatttcact ggttagccct aaggcgttca ttaatgagtc cggtgcgttg aacattccca
     6361 taatggaggc ggtggtgata attgccaccg ttgagctgcc ttgtgcggtt tttaaaattg
     6421 ccgaaatcag gaacgggaag aaaatccctg ctgtactgat aatatgagcg ttttgcttga
     6481 tgtaatccac aaagccggct tgagtaatca cgttacctag cacaccaccg gcggcggtaa
     6541 taaagagaat tgggccgact aatttcaggg tatcattggt taagctgtca aattccgcca
     6601 ttttaccgct tgaaaccagt aggaaaatag cgaagatcac cccaattgct aacgcaataa
     6661 tcgggttgcc gacaaattgt aggaatacgc cgaaatcgcc acttacaccg gcaattttgg
     6721 caatcgagcc gatagccatt aagataatcg gcataaaaat cggggcaaag cttaaaaacc
     6781 cacttggtaa tttgccgtat tgtttgatca gatcttcata gctttggctg attacttgat
     6841 ccgcttgagc ttcttccatc acgctgactt gtttgccaac atatttggca aagaagtaac
     6901 tggcaatcaa cacaggaatc gaaaccacaa agcccattcc gatcacaagc aggagattat
     6961 ggcttaaacc aacagcaccg gctgctgcaa tcgggcccgg tgtcggagga ataaagacgt
     7021 gggaggcata taaaccggca cttaacgcca ccgccattcc caccggattg gcaagaattt
     7081 ttttgcgaat agcttcacga atcgggttta acaccacaaa gccgctatca cagaacactg
     7141 ggataccaac cacccagccc ataatcaaca ttgccagttc agggcgtttt tgccccacca
     7201 cttttaccac catatcggct aatttgaggg ctgcaccggt tttttctaaa atcgtgccga
     7261 taatcgcccc aaaaataatc acgataccga tacttttgaa ggtattacta aaaccttcgc
     7321 ccacaatagt tggaattttg gcaagcggta aacctgccac taatgcaagg gctatcgaaa
     7381 tcgacattaa ggctaagaac gggtgaactt tccacttcgc aatcatataa atcattatga
     7441 tgatagcgac cagaaagatc agaataagtg caatacctga cataataagt ctcctcattg
     7501 tagaaaaatg aacttattat tcggtattta ttgctaaaaa gatttagata aatttgcaaa
     7561 aaatttgtta aaaacgaccg cttgtttgta tatttttaca atttttacga cagaaccgct
     7621 ccaagataca gcacaaattt ttgctctatg ttattgaaag ataaaccagt tatctgctca
     7681 atcttctcta aacggtaacg tagcgtattt gggtgaataa acaatttttt ggcagcgtga
     7741 tccagatcac aatttgcgaa aaaatagtaa cgcagacttt tcagtaacac ctgtttttta
     7801 tcggaaacca gtaaagcttg gaacggcgag agcaaggttt tcgcttccca agagtggctg
     7861 aaactgtgca agagggccgg cagtttaaaa tcttcaaaat gaataatctg cttacggctt
     7921 tggatctgct cggcataatt gagggtatgg caggcggttt ggtaggaaat atgggtttgc
     7981 gataaatttt cgaccgccag cccaaccacc gttttgaagg aaatatccgg atcgttaagt
     8041 ttgtttagtg cattgcggat taacgatttt tcgttggata aatgattcag caaggcaatt
     8101 ttatctaacc caatcacggc ggtgagtagg ctcgggaaat aatgttcgaa aaaatcaatc
     8161 aggcgttgga gtttttccgc agtagagccg tgaattttaa tcaccatcac cgacagcggt
     8221 tttgcaaaat cttgcccgaa aaagaccgct tgttgctgga tttctgctgt gcttaggcta
     8281 cctttgagca aggcccgcac aaactcttcc cgatagcggc gttgccaacg ttcctgttcc
     8341 aactcaaacg cttgctgcat aatcagctcc gccgccattt tcaccaattg agcatattgc
     8401 cgaacttgtt gtggctgccc tgaaatcccc actacaccaa tggttgagcc taaatagtga
     8461 agcggtaagt taatgcccgc tttcacttca tcgcaccact gttttgcaag attttcatca
     8521 atttcgaccg cttgatcgtt gcgtaacgca atcaccgctc ctgtgtgtcg ttgcccgata
     8581 cgaccgacat cgccggaagc aataatcacc ccttcactat ccatcacatt gacggagttg
     8641 ggaataatct gcatcgtgcg cttgacgatg cggtcggcaa tcgcttggtt gagtttcatt
     8701 atatgattcc tactcattcc caatactatg aaaaatccct ctttcgaggg atttgcaaat
     8761 tatctacgct tccacttcct gagaatagat catagcgtga agttattttg ccacagtcgc
     8821 tttaattaat ttttccgctt tggcaaggtt gttttctaca tcagcataat cggtattagc
     8881 gtgagccacc acttgatcgg cacgatttaa cattacttcg accttgccct tgttcggttc
     8941 ggtaattaac acttttaacg gtaattgcaa cgctaacatc ggatctttca ccattaatgg
     9001 cgtaccggct ttcggtgtgc cgtaaaccaa tacggttgcc ggttgcattt ctaagccggc
     9061 ttgttttgcc gccgcttggt gatcgatttc ggcaaaaatc gtcattcctt tttcttttaa
     9121 ggtgttggtt aaagttgtga ctgtagtttg gaaatcaaat ttactttcaa ataccaccgg
     9181 tttgacatcg gcaatatctg ccattgccac gctgctcatt gctaatgcag aaactgcgac
     9241 tgcttttaag ttcatttctt ttctcctcaa atagattaaa taatcccttg ttcttccaac
     9301 ttgcctaaga aataaggcat ctgtttacgc caagtcggcc agtcatggtc aatatcaaag
     9361 ccccagtagt caaaccaagc atcgatccct tttgcgttaa aagcctcttg taatcggcgg
     9421 gtgtcttcaa tatgctgttc ttcccacgca ccttgtccga ctgcaatcac atagtgattt
     9481 tggcggtagc ggtctaagaa ccaatcgtca ttttgacccc atacataatc aatcggcgag
     9541 ttaaaataaa ccgctttatc gccataaaac tcaccactga aaaagcgagc gtcataaaca
     9601 ccgcttaagg cgatggcaat atcaaacaga tccggatgac gtaaggcaaa gtttaccgta
     9661 tggaaagccc ccatactaca accggtggca atcatcgtgc cgttccagtg cgattcatgg
     9721 cggattaacg gcactagctc gtgaataata taacggtcgt aagcattatg agctaatgcc
     9781 atatcgtgtc cggatttatg tttagataac caagattccg catcgtaaga atcaggcgtg
     9841 taaaatttga ttaagccacg ttcaataaag gaacggcaag cctcaatcat tccaaaatta
     9901 ccatactcgt tttcattgcc gccggaggaa gggaaaacaa taaccggttt acctgcgtgt
     9961 ccgtaaacgt tgaacgacat ttcacgacct aattctccac tccagtggct tcttttttca
    10021 aaatgcatac ttcacctctt actgtttagc ttgtgcaaat tgtgcaattt cacgcatttg
    10081 ctccattgtt tcggtacggg ctaaaatgcc ttgttcgccc atcactttgg caaatacgcc
    10141 cggtacgctt tgcacgctga taatattgcc ggcaaatttc tcacaaacag cttcaatcga
    10201 attcacataa ttttggtttg ccttgcggga aatataaacc acgttccaag ggtgctgaat
    10261 atcggcatag aatttgtttt ctttcacaat attggcaaat tcacggaaca catcgaaatc
    10321 gttggcgtag ttccacatat caatagttaa gccacccggc ggacggcagt tgatttcgag
    10381 tggtaacaac tcttcttttt tgctcccttt aacacggaag aactcaaaat ggaaaaaacg
    10441 ctcttttacg ttaaaggctt tcacacattg tttgcccatt tccactaatt ttggcgaaat
    10501 ttcacatggg acatagtaga acatatcgcc atcttttgaa acggtatcta ataccgcttc
    10561 tgaatattca aggctggagt agaaaacgat attgccctct ttatcggtta aaccgtcaaa
    10621 ggtaataata tcgccgtcaa taaactcttc cataatatat tcaaccgttg gcgttttata
    10681 accgaagaaa gcttctaact cttccgcagt tttgattttg taagtatcgc ttgccccaac
    10741 ccctgaattt ggcttgataa tcaccgggaa tttaagctgt tttgctaatt tgcgggcatc
    10801 ttcatcatct ttaaatactc gcccttgtgc cactttcaag ccggttttgc ggaatacctc
    10861 tttcatttgg gctttggttt taattgagag catatcatcg ctcttataac caaacacatt
    10921 gaaatcggta cgcaatttcg catctaactc cagccaatat tcattgtgcg attcaatgcg
    10981 gtcaattcgc ccgtatttat gggcaaagta cgcgaccgca cgataaactt gttcgtaatc
    11041 ttccatatta tctacacgat aatattcagt cagggaatga cgcagatttt cgctcaatga
    11101 ttcataaggg gcatctgcaa ttcccaatgt attaaaaccg gcttcacgca aacgaatggc
    11161 aaaggtttca aagttcgttg ggaagtgcgg ggaaatcatc acaaaattaa gtggtctaga
//
LOCUS       DANLXB010000082        11128 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLXB010000082 DANLXB010000000
VERSION     DANLXB010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11128
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..514
                     /locus_tag="PXD41_001432"
     CDS             <1..514
                     /locus_tag="PXD41_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6288957.1"
                     /translation="AKQFCQRKNLPLYITEISKERIRRAGKQILQNNPENRPLDVGFK
                     VFKLTESHFKQWQSPTSENLADQLEMFIDPVSEKADTQAVLYELLLRLGLKLTAKVRL
                     ENKVFWVEENGLIFALLLNAADEEIIQTVIAQQPKKVIALDRLFNGNDARKKNTELQM
                     QDAGITFFVI"
     gene            524..3160
                     /locus_tag="PXD41_001433"
     CDS             524..3160
                     /locus_tag="PXD41_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6288958.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3292..5724
                     /gene="gyrB"
                     /locus_tag="PXD41_001434"
     CDS             3292..5724
                     /gene="gyrB"
                     /locus_tag="PXD41_001434"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL6288959.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5777..6739)
                     /gene="cmoB"
                     /locus_tag="PXD41_001435"
     CDS             complement(5777..6739)
                     /gene="cmoB"
                     /locus_tag="PXD41_001435"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL6288960.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(6836..8599)
                     /locus_tag="PXD41_001436"
     CDS             complement(6836..8599)
                     /locus_tag="PXD41_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL6288961.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
     gene            8863..>11128
                     /gene="cas3"
                     /locus_tag="PXD41_001437"
     CDS             8863..>11128
                     /gene="cas3"
                     /locus_tag="PXD41_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
                     /protein_id="HDL6288962.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFL"
BASE COUNT         3475 a         2187 c         2393 g         3073 t
ORIGIN      
        1 agcaaagcaa ttttgccaaa gaaaaaattt accactatat ataactgaaa tttcaaaaga
       61 acgtattcgc cgtgccggaa agcagatttt gcaaaataac cccgaaaacc gaccgcttga
      121 tgtaggtttt aaagtcttca aactgacaga aagccatttt aaacaatggc aatcgcccac
      181 atctgaaaat ttagccgatc aacttgaaat gtttattgat cctgttagtg aaaaagcgga
      241 tacgcaagcc gttttatatg agcttttatt gcgtttaggg ttaaaactca cggcaaaagt
      301 gcggttggaa aataaggtgt tttgggtgga agaaaacggg ctgattttcg ccttgctgtt
      361 aaatgcagcc gacgaagaaa ttattcaaac tgttatcgct caacaaccga aaaaagtcat
      421 cgctttagac cgtttattca acggcaatga tgcccggaag aaaaacaccg aattgcaaat
      481 gcaagatgcc ggcattacgt tttttgtgat ttaaggagaa aaaatggaac tccaatttga
      541 aaccttagag tatcaattac aagccgttaa tgccacagta aatttgtttg tcggacagcc
      601 gaatgccgca actgaatttt cactcaaagc ccaaaatgat atgcggtttg tgccgaattt
      661 aggcttgcag attagtgatg agcagttaca acagaatttg gctaatctgc aaaacaggca
      721 aaaaatcgac cgcactttgc ttgtcgaaca gggaaaaaat tttaccgtgg aaatggaaac
      781 tggtacaggg aaaacctatg tctatttacg cacgattttt gaattaaacc gtcaatacgg
      841 ctggcaaaaa tttgtgattg tcgtgccgag tgtggcaatt cgtgagggag tgttgcatac
      901 gttggaaact acaaaaagcc attttaatac ggtatttgat aacccgagcg tcaatcaaaa
      961 atttgaatat aaaagtaacc aaacttcacg cttaaaatcc tttgctagtg ctaatcatat
     1021 tgaaatttta gtgatgaata ttgatgcttt caccaaagaa agtaacgtga ttaataccgt
     1081 gaatgaaagc ggtgatgctc cgattttcta tattcaacag gcgaatccga ttgtgattat
     1141 tgatgaaccg caaaatatgg aaacggagat tcgccgtaat gcgattgaga gtttaagtcc
     1201 gcttttcact ttgcgttatt ctgccaccca taaaaatgcg tataacccga tttttagcct
     1261 caatccggtg caagcctatg aaatgggatt agttaaacaa attgaggtag atagcgtatt
     1321 ggcggaaaat gaggtaaatg gagcttatct ttccctcaaa gagattaaaa caggggcaaa
     1381 aagctggtcg gcaaaaatcg aaattttatt taacgataaa aaagcgatga aaaagaaagt
     1441 gattagcgtg aaaccgaatc aggatttgta tgagctttcc aaccaaaatg aaatgtatcg
     1501 ttcagggttt atattaagcg gaatggatac cgatagccaa atggttagct tctccaacgg
     1561 cacacaaatt tttcaagggg cggaacattc ccaacttaaa gaagatgtgc aaaaaatgca
     1621 gattcgccgc actattggcg agcatttgca aaaagaaaag aaattacgac cgcttgggat
     1681 caaggtgttg tctttgttct ttatcgataa agtggataat tatcgccctt ctgcacaaag
     1741 ccctacgggg ggaaaatttg caaaatggtt tgaggaaatt tatttggagc tagccaaaga
     1801 agagcctcaa ggcgtgcata acggttattt ctcacaggat aaaaaaggcg tagcaaaaga
     1861 tactaatggc acaacgcaag cggataacga gacttatcaa ctgattatgc gggataaaga
     1921 aaaattgctt tcgctggaga atccgttacg gtttattttc tcgcattctg ccttaaaaga
     1981 aggatgggat aatccgaatg tgtttcaaat ttgtacttta aacgatactg caagcgaaat
     2041 gaaaaaacgc caagagattg ggcggggctt gcgtttgcct gtgaatcaac aaggattgcg
     2101 gatttatgat cgtcatctaa atacgctgac aattatcgca aatgaaagtt acgaacaatt
     2161 tgccgccaca ttacagcgtg aaattgagga agattgtggt gtacagtttg ccaaaagcaa
     2221 tgttaaaaaa cgggaagata aaaaagccgt tcgctaccgt aaagatttca gcttacatcc
     2281 ggaatttgcg gcaatttggg aacggattaa acaccaaacc acttatcggg tagatttcag
     2341 taatgcggaa ttgattgaaa gtgcggtgga aaaaatccgc aaaatgcccg atatcgaggc
     2401 gacaaaaatt aagcattcca aagtgaaatt ggaaatgaat gaaacaggga tttcaactaa
     2461 ttatcgctca tctaatgaaa cagcggtaaa tacacaatgg gcgatacctg atttattgag
     2521 tgagattcaa aagaaaaccg ggctgacgcg tgcgaccctt tgcaaaattt tacaaaaatc
     2581 cgaccgcttg caagaagtct tccgcaatcc tcaacgcttt attgatttaa ttgcagagaa
     2641 aatcaacctt gctttacaac aaattatgac agacggggtg gaatatcaca aaattgccgg
     2701 aaaaacctat gaaatgacgt tattcggcga ttttgatttt tacctcaatc aatatacttt
     2761 tgaagttcaa gataaaacaa aaacgattta tgaagactat attgcactgg attcccaaac
     2821 agaaaatatc ttcgcccgac attgtgaatc tagtgagcaa gtggagtttt attttaaatt
     2881 acccaaacgt tttaaaattc caacgccatt aggcagctat aatcccgatt gggcagttgt
     2941 gtttaaggga gaaaataaaa tttacttggt tgccgaaacg aaaaatacag gcaaaggtat
     3001 tcaagcagga gtagatgaag aaaaattaga tgaaagtgaa cgaatgaaaa tcgactatgc
     3061 ccgtaagcat ttcaaaggct tacagagaga ttataaggat ttggattata gggttgtaca
     3121 gaaagtggag gagctgtctg cggagtattg taaaatttaa tctgtggtct tgtagaattg
     3181 agatagactg caatttcaac taaaatttaa ccgcttgttt tgcgatactt ttacgcattt
     3241 ttctgctata atcggcacaa ttttttcgat ttcaaattag taggaataag aatgtctgaa
     3301 caaactcaag caacaagtta tgattcttcc agtattaagg tgttacgcgg cttagatgcg
     3361 gtgcgtaaac gcccgggaat gtatatcggc gataccgatg acggtacggg cttacaccat
     3421 atggtgtttg aggtggttga taatgcgatt gacgaagcat tagccgggca ttgtaaagac
     3481 attattgtca caattcattc cgataattcg gtttctgtgc aagatgacgg tcgtggaatt
     3541 ccggtgggga ttcacccgga agaaggcgtt tcggcagcag aagtcattat gactgttctt
     3601 cacgcaggcg gtaaatttga cgataactcc tataaggttt ccggcggttt gcacggtgtg
     3661 ggcgtatcgg tggtgaatgc actttcctct aaattacaac tcactattcg ccgtgaagga
     3721 cacgttcacg agcaattcta tagcttaggt gagcctgatg cacctttagc gattatcggc
     3781 aataccgaaa aaacggggac gtcggttcgt ttctggccaa gtttggatat tttcaaaaat
     3841 aaaaccgaat ttgaatataa aattctgtct aaacgcttgc gtgaactatc atttttgaat
     3901 tcaggcgttt cgattaaatt aattgatgaa cgagacggca aagaagagca ttttaaatat
     3961 gagggcggta ttaaagccta tgttgagtat ttaaacgaag gcaaaactca tattcacaat
     4021 acgccattct atttgaccac tgagaaagac ggcattggcg tggaaatttc cctacagtgg
     4081 aatgacagtt acaacgaaaa tgtgtactgc tttaccaata atattccaca gcgtgatggc
     4141 ggtacgcact tagccggttt ccgtggggca ttaactcgtg cgttgaaaaa ctatatggat
     4201 aacagcgggg tattgaaaaa agccgatgcg aacattgatg cctcaggtga tgatgcccgt
     4261 gaaggtttag tagcggtgat ttcggtgaaa gtgccggatc cgaaattctc ctcacaaacc
     4321 aaagataaat tggtgtcgtc agaagtgcgt ggagcagtgg aaagctcaat gaatgaggct
     4381 ttatccgact atttagccga aaatccggac gatgcaaaaa atatcgttac caaaattatt
     4441 gatgcagccc gtgcaagaga agcagctcgt aaagcccgtg aaatgacccg ccgtaaaggg
     4501 gcgttagatt taggcggctt accgggtaaa ttagctgatt gtcaggaaaa agatccggcg
     4561 ttatcggagc tttacttggt ggagggtgac tctgccggtg gctcggcaaa acaagggcgt
     4621 gaccgtaaaa accaagcgat tttgccgtta aaagggaaaa ttctgaacgt ggaaaaagcc
     4681 cgctttgata aaatgctttc ttcacaagaa gtagcaacct tgattaccgc tttaggcaca
     4741 ggcatcgggc gtgatgatta taatttggaa aaattacgtt accacaaaat cattattatg
     4801 accgatgcgg acgtggatgg tgcacatatt cgtacgcttt tattaacttt cttctaccgt
     4861 caaatgccgg agctgattga aaacggctat atttatattg cacagccacc gctttataaa
     4921 gtgaaaaaag gcaagcaaga gcgttatatt caagataacg atgaaatgtc gcaatatgaa
     4981 attgatattg cattagaagg tgcaggctta tatgtgagtg aagatgctcc agcgttaagt
     5041 ggcgtagcgt tagagaactt aattgcccaa tataacggcg tacaaaaatt aattgaacgt
     5101 ttaagccgtc gttacccaac attattactt aacgaattaa tttattcaaa accgctttcg
     5161 gtggaatttg caaaaaatca agcaaatatg accgcttgga gcgagcaatt tgtcgctaca
     5221 ttgatggcaa aagaggtggg cggcagtttc taccgtatta ataccttgtt caatgaagaa
     5281 cgccaaattt atgagccgga aattattgtg actacacacg gtatggacag tacctatcgt
     5341 ttagattaca actttatcaa cggtaatgaa tacgctcgca ttgtggcatt aggcaacgag
     5401 ctgaacgatt tactatctga ttcagcctat gtggtgcgtg gtgaacgtcg ccaagaaatc
     5461 agcagttttg ctgaagcctt agattggttg gtgaaagaat ctcgtaaagg cttaactatt
     5521 caacgttata aagggttagg tgagatgaat ccggaacaat tatgggaaac cacgatggat
     5581 ccggtggctc gtaaaatgct acaggtcaat attaccgatg cgattgcggc agataaactc
     5641 ttcagtacgc tgatgggcga tgaagttgaa ccacgccgag atttcattga aactaacgct
     5701 ttgtatgctc agttagatat ttagttaaaa aatccgcatt tgacatgcgg attttttatt
     5761 ctcttaaact agcattttaa gcattcgcta aaatcaccgc ccgcttcgga gcagggtagc
     5821 cttcaatggt tttgctatga tcgtttggat ctaaaaaatc cactaaactt tcattttcca
     5881 accaatcggt ttttcgctgc tcttctagtg tagtgattgc ctcatcaaca caacgcacat
     5941 ttttaaagcc gactttttcc agccaattaa tgagtgcagc aacagaagga ataaaataga
     6001 tatttttcat tttcgcatag cgatcagccg gcactaaaac atcattaata tcgccatcaa
     6061 tcaccagcgt ttctaacacc aattcaccgc ctctgactaa ttgggctttg agttgagaaa
     6121 gatgatcaag cggtgatttg cgatgataaa gcacccccat tgaaaacacg gtatcaaaag
     6181 cagcaagcgg ttgcatttgc tcaataccaa gtggaatcag attagcccgt ctatcattcc
     6241 ctaagagttt ccgcactgcc tcaaattggc acaggaacag ctcggtcggg tcaataccaa
     6301 ctaccatttt tgccccttcg cctaccattc gccacatatg ataaccgcta ccgcagccga
     6361 catctaaaat ggtgcggtct tttaacggtg caagatgcgg aagcacacga tcccatttaa
     6421 aatcggaacg ccattcggta tcaatatgaa tcccgtgtag atgataaggg cctttacgcc
     6481 acggcattag ttgctttaaa tggtgggtaa tttgcttgac ttccccctca gataaaggct
     6541 tgcttgaaat agactcaacc ttgtctttta gattgataca agcggtcgaa tttggtaaaa
     6601 aatctgcaac ttttgcccac ttggcatagt cagcgtgggt ggtcttttcc cattgtttga
     6661 gttgtaaggg taaggtttct aaccaagcag aaaggtcggt tgtggcaatt tgttgataaa
     6721 aaggacgaaa gtcaatcatt ttgaaattta tgtctagggg agagacctat gccctcccga
     6781 aaggtagtaa atagaaagga caggcacaga acctacccct acgaaaaata taaaattatc
     6841 tcgcaatcgg atttactttc gctttttgca ctttgcgata agcgttcagt aatttctgat
     6901 gtgcagtcat attttcaagc gattcgtccg atgcagttaa accgtggaac gggttaccgc
     6961 cttggattgc accccaagca gcttcaaccg cttgtttacc gtacattttc tcaaacacca
     7021 tacgatattg ttccgaatca cgctcttcat ctaagaacaa ctcaatcgat tggattaagc
     7081 agcggtaata attgttacgt tctgctgaga atacgcttgc attcatattc gctgtccagt
     7141 ttgcccagtc tgaggcttgc tctaagttac ctaaagctaa atgcagcatc gatttaagct
     7201 caccgatacg caatgtttgc attgcagagc ctttctctgc caccacgcca ataaattcac
     7261 gcacacgggt taaatcatca atgctttgct catctaattc atcaagcagt tcttggtaag
     7321 tttcagcatc gtgatggaaa tgtggcaaat ctaacaagat ttcacgccaa tccataccca
     7381 tattgttatt ggcatagacc aaatcatcgc ttggatagat attcgacata cccggtgcaa
     7441 gaatacggca agcgtacaca cctaaatgct cataatccat aatatacaca ggctgattat
     7501 gcttgttgaa aatcgccatc atattattaa attcttgctc cgttgtgccg gagaagtccc
     7561 aatgcacgaa cggataatcc gcatcacgtt tgaaaagatc ccacgaaatt agaccgcttg
     7621 aatcaataaa gtgtgtctca aggttcgcat gatctgctac atcttcatta ttaaatgaag
     7681 gtggggcaaa cacatctaaa tcctttaagc tacggccttg taataactcg gttacggtac
     7741 gttcaaacgc cacttggaaa ttcgggtgtg caccaaaaga ggcaaaacaa gtaccgttat
     7801 ttgggtttaa caagatcaca caaataactg gaaattctcc gcctaatgaa gcgtcatagc
     7861 ataaaatcgg gaagtcttct tgctctagtt tctcgataga ggctttgatt gtcggataac
     7921 cgtcaatcac actttgcgga atttccggca agctgattgc ctcagtaata atacggtttt
     7981 tgacaaaacg ctcgaacact tcggataagc cctgcactcg agcttcattt tttgtgttgc
     8041 ctgccgacat accgtttgaa acaaacaggt tgccgataat gctttgcgga atgtaaaccg
     8101 tttcattgtc agattggcga acgtaaggta gggtaacaat tccacgatca taatttcctg
     8161 attgtaaatc aaccaataat tccggcgtga tttcaccatt cggatcaaaa tattcccata
     8221 aaaactcgtc catcatctcc attggtggaa tggcttcatc atcaatcgga aaccattttt
     8281 cggttggata atgcacaaat tcactattag caatctcttg acctaaataa aaatccgccc
     8341 agaaatagtt ggtagataaa cgctcaaaat actcacctaa tgcagaggca agagcggctt
     8401 ttttgcttgc tcccttaccg ttagaaaaac attgcggaca gtctgcatca cgaatatgca
     8461 ccgaccacac attcggaaca ggatttaacc aagaggcttc ttcaatatta aaacctaagg
     8521 tttttaattt atgctgaaag gtcgcaatgc tgtcttcaag tgcagcatct ttaccggtaa
     8581 taaaagtttg ttctgacatg ataatacctt taacttgtcg taaaaatggc aacattctag
     8641 caaaaatccc catagataag taaatttttt gtgaaatttc tgctgaaaga acagatttca
     8701 aaacttagaa aaaatgatta caagcggtca aattttactt gaattttgca agtgaaattt
     8761 gtgtttgatt tagattaaga aaatattatc taggatatat acagaataaa aggttagagg
     8821 tagtattgct tgtgttagga aggaaatatt gaaggtataa aaatggaaga acatactatt
     8881 cagtcttttt atgcccattc ggggaagctt tcagatcatt cagattggca aactttactc
     8941 agccacgcca ataatgttgg cttgcttgcc gccgaatttg ctgcgccgtt tgcttcacaa
     9001 gaaattgctc gctgcacggg gctattgcac gatttaggca aatatagtga acgttaccaa
     9061 aagcgtttac atggcggaga acgggtaaat cactctactg ctggtgcaaa aattgcagtg
     9121 gaacgttggg ggcctttggg caaaatgatg gcgttttgta tcgcaggcca ccacgctggg
     9181 ttagcaaatg gttctggaga agggaaaaat cgttctacac ttacacaacg tttgcaagag
     9241 caatttggct atggtcataa agatctaccg gtacttgacg ctatttggca gcaagaactt
     9301 aatttgcctg aaaaattgcc cttaccgccg ttaaagcctt ctaaaaacga acctttcttt
     9361 tcttacgcct tttttatccg aatgctctat tcttgccttg tcgatgccga ctttcttgat
     9421 acagaagctt tttatgccaa tctcgaaaaa agaccgcttg aacgaggaaa ttaccccaat
     9481 ttaaccgcac tccatcagca atttaatcaa tttattgcac agtttaggga gcgaattgcc
     9541 actcaaacgc ctaatacgca ggaagcacaa cgtaaagcgg aagtaaaccg cttgcggagt
     9601 gaaattttgg attatgccgt atctcaagca aaacaggaaa caggtctgtt ttctctgact
     9661 gtgccaacgg gcggtggtaa aacctttact tcaatggcgt ttgcccttga gcatgctaaa
     9721 cagtatggtt tatgccgcat tatttatgtt attccgttta ccagcattat tgaacaaaat
     9781 gctgcggaat ttcgtaaagc ttttggcgaa ttaggaacag aggcggtatt ggaacatcac
     9841 agcacttttg atcacgatag cctacctgat aaatcaagcc gagataagct gaaattggca
     9901 tcagaaaatt gggatactcc tgttgtggtt acaactgcag tgcaattctt tgaaagtttg
     9961 tttgccgacc gttcttcacg ctgtcgcaaa ttgcataata tcgtcggtag cgtgattatt
    10021 ttggacgaag cccaaatgct accgttgaat ttattacgcc caattatggc tgcgattgat
    10081 gaattagctc gcaattatca atgttcggta gtgctttgca cagcgacaca acccgctatt
    10141 catcaagcga acggttttta taaaggattt gaaaatgtgc gagaaattgc ccctaatcca
    10201 accgcacttt ttgaaaaatt gaaacgtact acggtaaagc atatcggtat tcaaacagat
    10261 gtggagttgc aaagcaaact cgcagataac ccacaaatgc tgataatcgt gaataaccgc
    10321 cgtcacgccc gagcgttata tgattcagcg aaacagttag agggagctta tcacctcacc
    10381 acgctaatgt gtgctaaaca ccgctcacaa acgctgactg aaattcgtct tcgcctaaaa
    10441 caaaacctac cttgccgagt gattgccact tctttaattg aagccggtgt tgatgtcgat
    10501 ttcccactgg ttatgcgagc tgaagcagga ctagattcag tggctcaagc agcagggcgt
    10561 tgcaaccgag aggggaaacg tttatctgta gaaagcaatg tttgggtttt ccaacctgaa
    10621 gaacagtgga aagcaccacc agagctaggc ttactttctg gctgtatgcg ttcaacggtt
    10681 caggttcacg cagatgatct acttaatccg aaagcaatca atcattattt ccaagcggtt
    10741 tatgaggcta aaggaaaaga gctggataag ccaaatattt taaaggcgtg tcacgacgct
    10801 gggcaaagcc ttaatttccc attccaaaaa atagctgaag atttccgaat gatcacaagc
    10861 catttaattc cggtgattat ccctttcgac caagaagccg aaaaccttat tgaccgttta
    10921 cgctatgcgg atcaagtagg cggtatttta agaaaactcc agccttacac tgtgcaagta
    10981 ccggaaaaag cattagccga actctataac gctggcagag ttgaaaccat taatgaaacc
    11041 aacttcggca aacagtttta ctgcttaatt ggaatggatt tgtatgatga agtggcgggg
    11101 ttgagttggg agaatgtgga ttttcttg
//
LOCUS       DANLXB010000083        11123 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLXB010000083 DANLXB010000000
VERSION     DANLXB010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11123
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXD41_001438"
     CDS             complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXD41_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL6288963.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXD41_001439"
     CDS             complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXD41_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL6288964.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXD41_001440"
     CDS             complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXD41_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL6288965.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3255..3845
                     /gene="rsmD"
                     /locus_tag="PXD41_001441"
     CDS             3255..3845
                     /gene="rsmD"
                     /locus_tag="PXD41_001441"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL6288966.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            3929..4243
                     /locus_tag="PXD41_001442"
     CDS             3929..4243
                     /locus_tag="PXD41_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL6288967.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            4256..4768
                     /gene="hpaC"
                     /locus_tag="PXD41_001443"
     CDS             4256..4768
                     /gene="hpaC"
                     /locus_tag="PXD41_001443"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL6288968.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            4886..5758
                     /gene="tehB"
                     /locus_tag="PXD41_001444"
     CDS             4886..5758
                     /gene="tehB"
                     /locus_tag="PXD41_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL6288969.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            5896..6933
                     /gene="purM"
                     /locus_tag="PXD41_001445"
     CDS             5896..6933
                     /gene="purM"
                     /locus_tag="PXD41_001445"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL6288970.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            7011..7289
                     /locus_tag="PXD41_001446"
     CDS             7011..7289
                     /locus_tag="PXD41_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL6288971.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            7432..8859
                     /gene="aspA"
                     /locus_tag="PXD41_001447"
     CDS             7432..8859
                     /gene="aspA"
                     /locus_tag="PXD41_001447"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL6288972.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXD41_001448"
     CDS             complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXD41_001448"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL6288973.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDAAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
BASE COUNT         3225 a         2442 c         2155 g         3301 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac caagttccta ggaactggtt tttatctgca
       61 attatttctc taaaaacaac cgcttgtatt agcctctact accaatacgg aaaatatttc
      121 gcattgtcgc aatttttgcc gacagccagc caataaacac acaaagcacc actaagaaga
      181 aggcttcgct gaaatctaat ccgttcagtt caaattgtac ggtaaacata tcagtcacat
      241 acttcactac accggtgaaa tagctaatcg ttaccgcact aaacagcacc gctaacaggc
      301 tgccaaacaa gccgtaaatc atacctgtgt ataaaaacgg acgggcaata aagtgatcag
      361 ttgcccctaa aatttgttgg acttcaatcg ctgctttgct attggcaaca tcggttcgca
      421 cactgtttcc aatcactaaa aaaactgcca acagcattaa taaggtacac accaccgcaa
      481 tacgagcaat cagccaagtt agagcagtta atttttccag ccagccgtta tctaaacgaa
      541 cctcctgcac ccctttaatt tgttgcaaac cgttgcgtag ctccaccatc gtatcagcat
      601 tattaaaatt tgctttcggt tttaaggtaa cgaccgcagg caacgggttt tcatctaaaa
      661 tatctaacgc ttcaccaaag cctgaccaag aacgaaattc gtctaaactt tgttggcgag
      721 aaatatagtt aaatgactca attttatccg tctcaaaagc acgaatgcga tcaacaacgg
      781 tattcacatc gtgttctgcc aaatttttgt gcagataaac ggttaattgt ggctcagggt
      841 aaaattgtgt tgctgcctcg tgggtattct tccaaagtaa ataactcacg gttggaatcg
      901 taagtgagac cgcaatcacc agcaccgtca gaaaagtgcc gagcttgcgt tgcattaaat
      961 cttgccaaac cgctcttaaa gagtagttgg tttgagcacc taatttacta aatgaacgaa
     1021 tcataatatt tccttaaaat ttaagatgcc cttgctccag cactaaacac ggctttggac
     1081 gctttgaaat aatattggta tcgtgggtgg caatcagcac cgttgtgccg gcttgattaa
     1141 attcctcaaa caaacggaaa atttcaaacg agagcttttc atctaagttt ccggttggct
     1201 catcggctaa taacagcgtt gggcgatgaa caatggccct ggcaatatcg acacgttgtt
     1261 gctcaccgcc ggaaaggtgc aacggcagat agttcgcttt atctgccaag ccaacacgct
     1321 caagggcaat gcgggcttca cgctccacaa tcgcttggtt cattcccaaa ataatcaatg
     1381 gtaatgcgac attatccaaa atggttcggt cggttaataa gcgataatct tgatgcacca
     1441 tcccgatttg gcggcgtaaa aacggcaatt catgatgagc aagtcgggta atatcgtgtc
     1501 cgttaaacaa aatttgcccg ccattggcac gctcaatccc cataattaat tttaatagcg
     1561 tgcttttccc cgcaccggaa tgcccggtaa tatatgccat tccaccggca ggtaggtgga
     1621 aatcaatgcc ctgtaaggct ggctttccgc ccttataaac cttgttcaca ttagtgaatt
     1681 taatcattct gttcgtcctc gtggctaaat aaggcttcaa taaattcttc tgcattaaac
     1741 gggcgtagat cttcaatttt ctcgcccacc ccaataaagc ggatcggaat attgaattga
     1801 tcggcaatcg caaaaatcac gccacctttt gccgtaccgt ctaatttagt taaggtgata
     1861 ccggttaaac ccactgcctc attaaacaat ttcgcttggc tgatcgcatt ttgcccagtg
     1921 ccggcatcaa gcgtaagcat aatttcgtgc ggtgcggttt catcatattt tttcatcacc
     1981 cgcacaattt tcttcaactc gtccatcagg ttatttttgt tttgcaaacg ccctgcagta
     2041 tcagcgatta gcacgtcaat cccttttgcc gcagcggatt gcatcgcatc aaaaatcacc
     2101 gaggcagaat ccgaaccggt gctttgtgcc accaccggaa tgttatttcg ctctccccaa
     2161 acctgtagct gttcaactgc cgccgctcgg aacgtgtctc ctgctgctaa cattaccgat
     2221 ttgccttctt gttggaattt acgggcaagt ttgccaatgg tagtggtttt ccccacgcca
     2281 ttcacaccaa ccattaaaat gacatacggt tttttcgctt ccaacactaa cggttgagcc
     2341 accggtttta gcacttcacc cagttccact ttcaactgtt gatacaacaa atctgcatct
     2401 tttaattgtt gcttggtagc atgttgcgtt aaattgttga tgattttttg tgtggtcggc
     2461 atacctaaat ccgccacaag caactgctct tccagctctt caaataactc atcatcaatt
     2521 ttcttgccac ggaagaaatt acggaagccc gaaccaatat tctgcttggt tttaatcaag
     2581 ccttgaatta aacgactgaa gaaaccgcct tgactcggtt tttcttgata ttcatcttgg
     2641 atagtagatt cttcaactgt gtcttgaaca ttatttacta attcagtttc agcaacttct
     2701 tcagccacag cctcttcgac ttgataagta acttgctctt gttcgttgag atctaactgc
     2761 tcagttgcaa tattttgaag attttcgacc gcttgttcgc ctttttgttc ttcaaatgtt
     2821 tgttcgattt tatcttcaac atcatcaaag aacgctttcg cctcttcaac tttttcttca
     2881 acaaactctt tgaaatcttc gactttttgt tcaatggtat cttctacttg ctcagcaaat
     2941 tgctcaattt tttcttcttt ttcctcaaaa tagtcttcta actgatctac cttttcttca
     3001 attttatctt ccagctcatc taatttttca gaaaacgact tctcagtttc cggttcaaca
     3061 ataacaggct gttccggttg aatactctct tgttcttgtt gaatctcttt ctgttcagct
     3121 tcttctttct taccaaatcc aagccaagac caaaaccctt ttttcttctc tgacatattt
     3181 ttctctcatt tctcgtaaaa atagactaaa cttacatagt ctatcaaaaa atcccttatt
     3241 ttcctttagt gagtatgaaa aaaaatcgaa attcccccca atctgttcag caaatgggcg
     3301 aagtacgggt tatcgccgga ctgtggcgag gcagaaaatt acctgtacta aatgccgagg
     3361 ggcttcgccc gacaaccgat agagtaaaag aaacgctgtt taactggtta atgcacgaca
     3421 ttgctcactc acgctgtctt gattgctttg caggcagtgg ctctctgggc attgaagccc
     3481 tttcccgcca agcacaagcg gtcgtttttt tggaaaaatt tgcaaatgct gccaaccagt
     3541 taaagaaaaa tctccaagca ttaaaatccg aacaaggtag cgttattcac actgacaccc
     3601 tcgcctattt agcacaaaaa aataacggtg agccatttaa catcgtattt atcgatccgc
     3661 cttttcatca agggtttgta cctcaagtgc taaacttgct ggcagaaaat aactggctcg
     3721 ccccgaatgc gattttgtat gtggaaaccg agaaaaatca cccgccatta gagctaccgc
     3781 aaggctggca aattttaaag gaaaaagcag ccggaatggt ggtaagccgt ctgattcagc
     3841 tataatcttt ttgtttttta taactaaaaa atataaaata aaacttatct atctaacatt
     3901 ttattaacac tcaaattaga ataacgaaat gaaaaaatta acccctgatg aagccattga
     3961 tattgcctac gatattttct tagaaatggc aggcgaaaat ttagatcctg ccgatatttt
     4021 actgttcaac ctccaatttg aagagcgtgg tgcagtggaa atggtcgaaa cttctgaaga
     4081 ctgggatcaa gaaatcggga ctttaattga ccctgatgcc tttgccgaag tttgggttgg
     4141 cttagtcaat gaacaagatg aaatggacga tgtattcgcc cgtttcttaa tttcccacga
     4201 tgaagaaaac cgtgaatatc acgttgtttg gaaagaaaaa taaaaaggag aaaaaatggc
     4261 taatatcgac actaatcaac caatagaagc ctcgcttaaa tttcgtgaag caatggctca
     4321 cttatcttct gcggtgagca ttgtgacaac caatggcgta gccggcaaag cagggctgac
     4381 ggtttcgtct gtttgttccg ttaccgattc cccaccaacg ctcttatttt gcattaataa
     4441 aaacagccac gttcacgata ttatccaaca aaacggcaaa gtatgcgtta atgtgttaag
     4501 ccacgaacaa gaagacttag caaaacattt tgccgccatt ttagaaagta caatggaaga
     4561 acgctttggt tgggatattt ggaacaacgg ctttgacgat cagcctgtgt tacgcagtgc
     4621 tatttctgct ttacaaggca atattgttga tacgcacgca gtgggtacgc atactatttt
     4681 tgtggtagaa gtgagccata ttgacgtaga gccgaaccac agtttagttt attttgcccg
     4741 ccaatttaga agcgtgaaca ttgactaaaa tatatttaac agaaatttga tcaaatccga
     4801 cttttttagt cggatttttt atttcctgtt tttaaaacag tgctaaaatt ttgccgttta
     4861 tgtttgactg acaaaaggaa acaaaatgga aaatttaatt tgctacaaac aaatgccggt
     4921 gtggacaaaa gcaaccttac cacaaatgtt ccaagaaaag cacaacacca aagtcggaac
     4981 ttgggcaaaa ctcaccattc tcaaaggttc tctcaaatat tatgaattaa ccgaagaggg
     5041 agaaattatc aaggaagata tttttgatgc aaaccaccaa cgcccaatgg ttgagcctca
     5101 actttggcat aaggttgaag ctctttctga cgatttagaa tgccagttgg ctttctattg
     5161 caagccggaa gattattttg ctaaaaaata taatctgacc gctacccatt cagaagtgct
     5221 aaatgccgtc aattatacca aaggtggcaa agcgttagat ttaggttgcg ggcgaggacg
     5281 caatgcactt tatctgaatt tactgggttt tgatgtcact gctgttgatc ataatcaaga
     5341 aagcattgat tttctcaact atatgatcga aaaagaacaa gctcaaaaca ttactaccgc
     5401 tgtttatgat attaacgagg caactatcgg ctcgcaaaac ggtgaatatg acctgattat
     5461 ttccactgtt gtaatgatgt tcttaaaccg tgaacgcatt cctgccatta ttgagaatat
     5521 gcagaaaaac actaaagtcg gcggttataa cttaatcgta tgtgcaatga gtaccgatga
     5581 ctacccttgc ccgatgccgt tctcctttac cttcaaagaa ggcgagctcg ccgattatta
     5641 tcaaggttgg gaattagtca aatataacga agatttagga catttacaca aaactgatga
     5701 aaacggcaac cgcattcaac tacgttttgc gacaatgttg gcgaaaaaaa tcagctaaac
     5761 ttaaccgctt gcagggggaa ttagcttccc cctaattcat caaatccatt ctatttattt
     5821 tcactttttc attccgcaaa cgtttgcttg tgctataatg gcttcgtttt ttagtcattt
     5881 actgttgagg ttaaagtgag caacacacaa ctaagttaca aagatgccgg cgttgatatt
     5941 cacgcaggaa acgagttagt cgaacgaatc aagcctgatg ttaaacgcac ccgtcgccct
     6001 gaagtaatgg gcggattagg tggttttggt gctttatgtg ctttaccgac aaaatataaa
     6061 gagccgattt tagtttccgg taccgatggc gtcggcacaa aattacgctt agccattgac
     6121 ttaaacaaac acgatactat cgggcaagat ttggtagcga tgtgtgtgaa tgaccttgtc
     6181 gtgcaaggtg ctgaaccgct tttcttctta gattattacg ccaccggtaa attagaggtt
     6241 gatgtagcca ccaatgtcgt caaaggcatt gcagacggtt gcgtgatttc aggttgtgct
     6301 ttagtgggag gtgaaacggc tgaaatgccg ggaatgtacc acgaaggcga ttacgattta
     6361 gccggattct gtgtcggtgt ggtagaaaaa tctaaaatca ttgacggttc aacggtgaaa
     6421 accggtgatg ccttaattgc attagcgtcc agtggcccgc attccaacgg ctattcgtta
     6481 attcgtaaag tattggaagt cagccgatcc aatcctgcaa ccgatttatt ggaagacaaa
     6541 cccttaagcg aacacttatt agccccaact aaaatttatg taaaatcaat cctaaaatta
     6601 gttgaagaag ttgatgttca cgctatcgct cacttaaccg gtggcggttt ctgggaaaat
     6661 attccacgcg tattgccgga atctgccaaa gcggtgattg atgaatcgag ctggcaatgg
     6721 ccggcgatat ttagctggtt acaggaaaaa ggcaatatca gccgttatga aatgtaccgt
     6781 actttcaact gcggtgtcgg aatggtgata gccttacctg agagagatgt cgaaaaagcc
     6841 cttactcttc ttaaagagag tggtgaaaat gcgtggctta tcggtaaaat tgaagactta
     6901 ggcaccggta gcgagcaagt tgaaatccgc taatttgcaa aataaatgct aaaattgacc
     6961 gcttgtagta actgatctgc aaacggttaa atttttattg aggaatgcaa atgcaactat
     7021 tttggcctat ctactttgtc ttaatgaacc tagctgcctt atatttaatg tatagtgaca
     7081 aacaaaaagc gatcaaaaaa gaatggcgag tgccagaaat tactctcctc tctttttgcc
     7141 tcttaggtgg ggctatcggt gtttacctag gtatgaaata ctttcgccat aaaacccaac
     7201 attggtattt ccacgtcgct gttgtgcttt ctacttttgc ttggctgatt ggcttgcctt
     7261 acttttattt agctttatca tcatattaat ttatcattac tttttttaat ccgaaagccc
     7321 aatttatatc ctagtccgct cacaaaaaat ttgatttaga tcgcattatt tgtctattaa
     7381 aatcgttatt atctaccaaa atcgattgtc atttatttta aggagatgaa tatgtcagat
     7441 gtgcgtattg aacacgattt acttggtgaa agagaagtac ctaatagtgc ttattggggc
     7501 attcatacat taagagcgat tgagaatttt aatatctcaa atgtcaccat ttctgatgta
     7561 cctgaatttg tgcgtggcat ggtaatggta aaaaaagcta ctgcgttggc aaatggtgaa
     7621 ttgggtgcaa tcccgaaaaa aattgccaaa gctattgtgg cagcctgtga tgaagtatta
     7681 gtgaaaggac gctgtctcga tcaattccct tcagatgttt atcaaggtgg agccggcaca
     7741 tcggtgaata tgaataccaa tgaagtgatt gccaaccttg cattagaaat tttgggcgag
     7801 gcaaaaggta aatatgatat tgtcaatcca atggatcacg ttaatgcaag ccaatccacc
     7861 aatgatgcct atccaaccgg tttccgcatc gcggtttata acagtatcac taaattaatc
     7921 aataaaatca cttacctaca aactgcattt gaaaataaag ccactgagtt ttccgatgta
     7981 ctaaaaatgg gaagaacgca gttacaagat gccgtgccaa tgacgctcgg tcaggaattt
     8041 aaagcttttg ccgtattatt agatgaagag gttcgtaacc ttaaacggac ggcagaattg
     8101 cttcttgaag tgaatttagg cgcaaccgct atcggtactg gtctgaatac gccagagggt
     8161 tactctactc ttgcagttaa atatttagcc gaagtcacgc aactgccttg ctcactgtct
     8221 gaaaatctca ttgaggcaac atctgactgt ggtgcttatg taatggttca cggtgcatta
     8281 aaacgcaccg ccgtcaaact ttctaaagtg tgtaatgact tacgattact ttcatcaggc
     8341 ccacgtgccg gcttaaatga aattaatctt ccggaattac aagccggctc atctattatg
     8401 ccggcaaaag taaaccctgt tgtacctgaa gtcgtaaacc aagtgtgctt taaagtgatt
     8461 ggtaacgaca ccaccgttac ttttgcagca gaggccggtc aattacagct taacgtaatg
     8521 gagccggtta tcgggcaagc aatgtttgaa tctatcgagc tgctttccaa tgcatgtatt
     8581 aatctacgtg ataaatgtat tgacggtatt accgctaacc gtgacatctg ccaaaactat
     8641 gtgttcagct ctattggtat tgtgacctac ctcaatccat ttatcggcca ccataatggt
     8701 gatattgtcg gcaaaatttg tgcaaccacc ggcaaaagtg tacgagaagt tgtgcttgag
     8761 cgaggcttac tcaccgaaga acaactcgat gatattctct cgattgagaa cttaatgaat
     8821 ccgacttata aagccaaacg ctttaccgaa gaggaataat cattgtttac aagcggtctg
     8881 attctggcaa aaaattgcaa atttttacca aaatcagacc gcttgttatc ccattatttc
     8941 ttatttgctt tcagcatcgc cattaaattt gcaatatttg cagaagattt tgcctctttt
     9001 tcctgttcgg tcattcttgg cttttcactt tcccactcca aatcatcttg tggcaattcc
     9061 agtaaaaacc ggctcggctc aggtttgatg atttcgccat attggcgacg ttctttacac
     9121 agtgaaaacg tgagcgtttg ttgggctcgg gtaatgccga cataagccaa acgccgctct
     9181 tcttctacat tgtcctcatc aaggctggtt tggtgtggca gaatcccctc ttccataccg
     9241 attaagaaaa cgtgcggaaa ttccaaccct ttcgaggcgt gaagagtcat tagttgaact
     9301 tgatcggctt catcgtcctc ttcgccacgt tcgagcatat ctcgcaaggt taaacggttt
     9361 accacttgca ccaaattcat cggaggctct atttcatcgc cctctaacat cgcttgcacc
     9421 cattcaaaca aggtctgcac attacggctt tgcatttccg ctacttttgg gttcgccgcc
     9481 atttcataca aataggcttc atactgaatt ttcgccaaca gatcttttac tgcttcaatc
     9541 ggatcggatc tatcggcttg atcggcaatt tccacaatcc agcgggcaaa atcctgtaag
     9601 gcttggtaag gctttggcgt gaggcgttgt atgagttcaa aatcaaaaat cgcctcaaac
     9661 aaactgacct gcttttcatt agcaagtatg cctaattttt ctagcgttgc cgccccaatt
     9721 tcccgtttcg gcgtattcac aatacgcaag aaagctgcag catcgtcttg attcactacc
     9781 aaccgcagat acgccatcat atctttgatt tccgctcgag caaaaaatga cgtaccaccc
     9841 gaaattttat acggaatgcg gttttgcatt agcaattttt ccaacaagcg ggattgatgg
     9901 ttgcctcgat acaaaattgc ataatctttg tatttggtct ttttcgagaa acgatgggca
     9961 atcagctcgc ccacaatgcg ttccgcttcg tgttcctcat tttttgcctc aatgacctgt
    10021 aatttttccc cttgccccag ttctgaaaac agccgcttgc taaacaagtg atcgttatta
    10081 tcaatcagaa tattggcaca atgcagaatc cgctggctgg aacggtaatt ttgctcaagt
    10141 ttaatcactt gcaaatcaaa atcttcccgt aaccgttgca tattttcagg cttcgcccca
    10201 cgccaagagt aaattgattg gtcatcatcg cccacgaccg taaagtttgg ctcgttgccg
    10261 acaatcagct taattaactc atattggctg gtgttggtgt cttgatattc atcaactaac
    10321 aaatagcgaa ttttctgttg ccaacgagat tttgcttcgg gaaattggcg gaacagcaac
    10381 accggcaaca taatcaaatc atcaaaatcc aacgcattat aagccttaag ttgattctgg
    10441 tagagctgat aaaaatgtga aaacactcgc tcacgttcat cacgcacacg agtaagtacc
    10501 ctttcaggcg aaagcaaatc gtttttccag ttagaaatag tggcaattaa ggctttcagc
    10561 agatccttat cttccgtcac attttcaggc aataaatgtt tcagcaaagc aatttgatcc
    10621 tgctcatcaa acaaggtcat acccgattta aaaccgagca atttatattc gcgttttaaa
    10681 atttcaaacc caagtgtgtg aaaagtcgaa atggttaaac ctttgctgtt ttctttgccg
    10741 atagaatgat ccacccgttc acgcatttcc cgagcagctt tgttggtaaa ggttactgct
    10801 gcaatctgct taggcgaata gccacaatgt gcaattaaat gtgcgatttt attaataatc
    10861 acccgagtct tacccgagcc ggcaccagcc agcacaaggc aagccccttt ggtatattct
    10921 actgcttgtt gttgttgaga attgagtttc attgaatcta ttcaaaagta attttgacaa
    10981 ctattttaac ggaaagaaaa caagcggtcg aattttcagg aaaatttgca aaaaactttg
    11041 aaaatccgac cgcttgttca tcagagaaaa atccccaaaa cgcaaatttt tcctttcaat
    11101 cttgcccctt tagctatatc att
//
LOCUS       DANLXB010000084        11098 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLXB010000084 DANLXB010000000
VERSION     DANLXB010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11098
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(131..1420)
                     /locus_tag="PXD41_001449"
     CDS             complement(131..1420)
                     /locus_tag="PXD41_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL6288974.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1544..2341)
                     /gene="ccsA"
                     /locus_tag="PXD41_001450"
     CDS             complement(1544..2341)
                     /gene="ccsA"
                     /locus_tag="PXD41_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL6288975.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2557..3081
                     /gene="yceD"
                     /locus_tag="PXD41_001451"
     CDS             2557..3081
                     /gene="yceD"
                     /locus_tag="PXD41_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL6288976.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3098..3268
                     /gene="rpmF"
                     /locus_tag="PXD41_001452"
     CDS             3098..3268
                     /gene="rpmF"
                     /locus_tag="PXD41_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL6288977.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3287..4309
                     /gene="plsX"
                     /locus_tag="PXD41_001453"
     CDS             3287..4309
                     /gene="plsX"
                     /locus_tag="PXD41_001453"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL6288978.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4406..5689)
                     /gene="hisD"
                     /locus_tag="PXD41_001454"
     CDS             complement(4406..5689)
                     /gene="hisD"
                     /locus_tag="PXD41_001454"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL6288979.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5701..6600)
                     /gene="hisG"
                     /locus_tag="PXD41_001455"
     CDS             complement(5701..6600)
                     /gene="hisG"
                     /locus_tag="PXD41_001455"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL6288980.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6633..6760)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6959..7816
                     /locus_tag="PXD41_001456"
     CDS             6959..7816
                     /locus_tag="PXD41_001456"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL6288981.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7957..9438)
                     /gene="ilvC"
                     /locus_tag="PXD41_001457"
     CDS             complement(7957..9438)
                     /gene="ilvC"
                     /locus_tag="PXD41_001457"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL6288982.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9660..10895
                     /locus_tag="PXD41_001458"
     CDS             9660..10895
                     /locus_tag="PXD41_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL6288983.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT         3321 a         2472 c         2081 g         3224 t
ORIGIN      
        1 caagacatct tcagttaaat ataaataaaa acctaaaagc taccagcata attatttata
       61 ttaaaattaa caaaaaaata acacattatt tgtacaaata atgtgttatt tactttcttt
      121 tttcttaaaa ttaggctgaa tcttgctctt tttcaatttt cggtgaaaga tgttcaactt
      181 tcgcttgttt aaccatattt tcactcactt caagaatcat cactttcaag ttgtagagtt
      241 caaattccat tccttcatca ggaatttttt ctaaatgctc taaaatcaag ccgttaaagg
      301 ttctggcttc ctcaagcggt aaatcccaat caaatagttt gttcagatca cgcaggttgg
      361 ctgagccttc aataatcacc gtaccatctg attgttgctg aacttcttgc tcaagggtcg
      421 gtgctgatga agtcgtaaat tcacccacaa tttcttctaa aatatcttca agagtgacta
      481 gccctttaat atcaccatac tcatcaacca ctaaaccaat acgctcttta ttcgctttaa
      541 agttcattaa ttgtgtagtg agtggtgtgc cttcaggaat aaaatagact tcatctgttg
      601 cacgcagtag catttctttg gtaaattcgt ttttctccaa cattaaacga aaggcttcac
      661 gcacccgcaa aatcccaaca atattgttgt ccatatcccc tttgtagata atcacccgag
      721 cgtgaggggc gtgattaagc tgacgcataa tcgctttcca gtcatcatca atatcaatgc
      781 cgctgatgtc gttgcgaggc accataatgt catcaaccgt cactttttcc atatctaaaa
      841 tagagaccaa catttcacgg tgttcggcag gaataaattt accggcatca agcactacac
      901 tacgcagctc ttcggagctt aagccttgtt tatctttttg ttgaatccgc aataatttca
      961 tcagcccggc aataatcaaa ttcattaaaa atacaatcgg gctgagtaat tttttaagcg
     1021 gtgttagcac aaagctggcg aaaaaaccga ctttttcagg gtaaattgcc gctactgttt
     1081 taggtaggat ttccgaaaaa accaacatta caaaagttag caaaccggtt gcaattgcca
     1141 caccggcttc accggataac tgcataccga tcatcgttgc aatcgcagag gcggcaatgt
     1201 tgactaagtt attacaaatt aagataaggc taagtagcac atcggtgcgt gccaagagtt
     1261 tttccgccag tttcgcccct ttatgccctt gctcggcaag gtgacgcatt ttgtagcggt
     1321 ttaaagacat caagccggtt tccgagcctg aaaaaaatgc agagagtact aaaagaatag
     1381 ctaaggtaat aaataaacta ctcaggggaa tactgtccaa aattcaattc ctatgtaaat
     1441 taatcataaa aggtagcgta acactaaaag cgttgtcact acctcacttt gtcggttcag
     1501 ccgacttgca aaaaattttg cttttttgac cgcttgtaga tcattaattg acgatcaaac
     1561 gactaccgaa atagccgatg gtgagcaaca tcatacccga aatcgaataa ataagcaccc
     1621 gttttccacg ccaatgtaat ttccactgtc caagtaactg aatgctataa acaagccaag
     1681 ctaaaaagga gaaaattgct ttatgaatat gctccggctc gaaaaagtta tgcaaataaa
     1741 ccacaccgga aaataaagtg agcgtcagca tagcttgtgc agctaaggtt aaagtaaaga
     1801 aatggcgttc aaccgtcatt agcggtggta gaatctggca aaagaacatt gttttgctct
     1861 ttagttttct atccagccat ttgagttgaa aagcataaat taatgctaaa aagaagagag
     1921 cataagaaaa taatgcaatc cctaaatgga aaagcagtcc cgcattttct tgcacattac
     1981 ggataaaact accttttaca aatccagcca cccccacact acaaatggcg aaagagtaca
     2041 caataattaa aggaaaccaa accgttttcc attttaacaa cgcaagtgtg acacaagccg
     2101 ccataatgaa actcatcaaa gagattacat ttgttaccgt aaaattctgc ccttcgatta
     2161 aaaataattc attatataac acagaaaaat gcaaaatcgt ggcaagtaac ccaaacccaa
     2221 agactaacat catattaggc tttttattaa ctgttgcggc attttctaaa ttcactagag
     2281 taggggcaac ccaaagtagc gctagagcgt aagcaacaat ggataaaaga ggaagtaaca
     2341 tattgtctcg aatctcgtca aataagaata actatcagaa ttttaatcaa aagtaaccgt
     2401 tttagctagt ttttgctgtt gctagatcaa aaattatcct aaaaaatgtg cttttcgcct
     2461 taaattgaac cctacctttt ctcggtaaga ttatctcact gaaaacaata attttccttt
     2521 gactaatttg ctttctatct gtaatatgca caccctatgc aaaaggtaaa actacccctt
     2581 acgattgacc cttacaaaga tgctcagcgt cgcgttgatt atgaaggcta catttcaggt
     2641 aaacttctaa cacgcttggg tgaatcagta tgtaatgtgc aaagtgatgc acaagtcact
     2701 ctctcgttat atgtcgatcc acaacgccta actgtgatta aaggcacagc aaaagtagat
     2761 gtggaatttg attgccaacg atgtggtgac ccgtttacac aaacgctcga ctgttcattt
     2821 gttttcagtc cggtgtctaa catggatcag gcggacatct tgcccgaaat ttatgaacct
     2881 atcgaagtaa acgagttcgg tgaagtaaat ttactagata tgattgaaga tgaatttatt
     2941 cttgaattac ctctagtccc gatgcatagt gaagaacact gtgaagtgtc cgtaagtgaa
     3001 caggtatttg gcgagttgcc ggaagaactg gtacaaaaac caaacccgtt cgcagtatta
     3061 gctaatttaa agaaaaacta gatctaggag aaagcccgtg gctgttcaac aaaataagaa
     3121 atctcgttca cgtcgtgata tgcgtcgttc acacgatgca ttaacaactg cagcagtttc
     3181 agtagataaa accagtggtg aaactcactt tcgccaccac gtaactgcag acggttacta
     3241 ccgtggtcgt aaagtaatca acaagtaatt cctttcgagg tttatcttgg ttgatatcac
     3301 tcttgcagta gatgtgatgg gcggggactt tggtccccgc gttactattc ctgcactgga
     3361 aaaagcctta aaacaaaatc caagcctttc ttttttatta tttggtgatg aacaccaaat
     3421 agccccttta ttacaaaaac acacactact caaccacccc aaaatccaaa ttcatcatac
     3481 cgaacaagtg attgaagctg atgttccgtt cactactgca atccgccaaa gcaaaaacag
     3541 ctctatgcgg ttagcgattg aggcagtaaa agagggcaaa gcacaaggtt gtgttagtgg
     3601 cggtaacact ggtgcgttaa tgggattggc aaaattattg attgaaccat taccaaatat
     3661 tgaacgccct gcactcactt cgctaattcc taccctcaac ggcaaatcca gcgtaatgtt
     3721 agatttaggg gcaaatattg aagtaagcaa tcaccagcta caacaatttg cagaaatggg
     3781 aaacctgttt gctcaagtaa tgcttgattt agtttaccct cgcctgtctt tattgaatat
     3841 tggtacagaa gaaaataaag gcacggcaca acttcaggca gtgcatcaac tgctgaaaaa
     3901 cagacaagac ttaaattaca ccggctttat tgaaagcgat aaattaacca gctatctcac
     3961 tgatgtgatt atttgtgacg gctacaccgg caatatcgcg ttaaaagcgt tggaaggggc
     4021 agctaaaaat attatttctc tctttaaaaa agagaaagcc gattccaata tttgccgtaa
     4081 caccaaacga tatttactga aagcgatgtt ctaccgttac taccgcaaat tgcaacaaat
     4141 taaccctgac cgccataacg gtgcgacctt gctcggctta tctaaagtag tcgtgaaaag
     4201 ccacggcggg gcaaatatca atgcctttta ttacgctatt gattatgcgg tgcaacaaat
     4261 tcaaggcgac attccaaata aaatcctaga gggtttaacc caaaaataag cgaactcaac
     4321 tgttcgctta ttttcatttc ttgtttcact taaagataca agcggtcaaa tttgcaaaaa
     4381 aatttaccca ttcaaccgct tgtgtttagc cttttaattt tgccactcgt aaactaaccg
     4441 cattgcggtg tgcatctagc aattctgcac ttgccattcg ttccaccgtt tcggccaagg
     4501 ctagaaagcc ttgtggtgtc agctcctgca ccgtcattcg cttgctaaaa tcagctaaac
     4561 ctaagctcga ataggtttta gtgtagccgt aagtcggtaa aacgtggtta gtgccgctag
     4621 cataatcccc catactttcc ggcgaatacg cccctaagaa aatcgagccg gcattatcta
     4681 aatccgccaa caacgagcga gcattttcag tttgcacaat taaatgctcg ggtgcatatt
     4741 tattactaat ttcgaccgct tgttgcaggt tttccgcaat aaaagtgcga ctgtgagcca
     4801 atgctttacg ggcagtttcg gcacgaggta aaaccgccac ctgcttttct aattcttcat
     4861 cgactgccct tgccaagctc tcacttggtg tgactaaaat cacttgggaa tcggctccat
     4921 gttctgcttg agagagtaaa tcgctcgcca caaatgcagg gtcagcaaac tcatcggcaa
     4981 tcaccaacac ttccgacggg cctgccggca tatcaatcgc cgtgccttct tgcacaactt
     5041 ggcgtttcgc ctccgtcaca aacgcattgc ccgggccgaa aattttatcc actttcgcta
     5101 ccgtttgtgt gccatttgcc atcgcaataa tcgcttgagc ccccccaact gcgtaaatcg
     5161 tttccacccc acacaaatgg gcggtgtaga gaatttcatc ggcaatcggc ggtggtgagc
     5221 aaagcacaat cttgttacaa ccggcaattt ttgccggcac tgcaagcatt aacacggtag
     5281 agaaaagcgg ggctgaaccg cccggaatat aaagccccac cgcattaatc gggcgagtga
     5341 tgacttggca acacaccccc ggctgggttt caatatccac ctcttgattt tgctgtgcct
     5401 tgtggaaagc ctcgatattc gctttcgcat tttgaatcgc ttgcttaagc tctggtgaaa
     5461 tacggctctg tgcttgctga atctgctgtt ctgatacaac taagctctct aattttactt
     5521 tatcgaactt ttcagctaat tcaaataatg ccttatcgcc gttggcaatt acattcgctt
     5581 taatttcatt aactgccgct ttaatactct cgccaaccac ctgtgccgga cgggcaagat
     5641 attgctgctg ctcagtttct gttaaattgt tccaaattag ggtttgcata tttattcctt
     5701 ttacgccaac attttctcaa tcggtaaaac caatacggaa cttgcgccca tttcttttag
     5761 ctgctccatt gtttcccaga acaggttttc ttggctgaca acgtgcattg ccacacgggt
     5821 ttggtcgtta gctaacggta aaatagtcgg gttttccaca ccgggtaata aagcggtaat
     5881 ttccgccagt ttgtctttgg gggcgtgcag cataatatac ttagattcgt tcgcctgttg
     5941 cacaccttga atgcgggtta ataatttatc cactaacgct tgtttttccg ctgaaagtgg
     6001 ttcttggcgt tgaattaggc aagcagttga acggtaaatc acttcaacct cttttaatcc
     6061 gttcgcctct aatgttgcac ctgaagaaac caagtcacaa atcgcattcg caattccggc
     6121 acttggagca acttcaaccg aaccggtgag taaaatactt ttaaacggca cattttgctc
     6181 tttcatatac cgctttaata aattggggta agaagtggca atcacagcat cttctaaatc
     6241 tttgatattg ttataatttt tatcacgatc aatagctaac gataaacggc agccaccaaa
     6301 atctaactga cgaagttttt tataggcaac attctcacca gcacttaatc gccctaattc
     6361 cacttcctct aatacatttt caccgataat cccaagatca actacgccgt caaaaactaa
     6421 gcctggaatg tcgtcatcac gcacccgtaa aatttcaatc ggcatatttt ctgaataggc
     6481 aatcaggcgt tgatcgttcc aaatgatttt cacgccacat tgtttaagca actcactaca
     6541 ttcttggctt aagcgacctt ttttctgcat cgcaattctt aatcgatttt gtgttgtcat
     6601 tgttgtttcc ttcttatgtt ttaaattgta aaaataaaaa aacctctcga aatcacttcc
     6661 gagagggtta aatttatgct gcgtttaggc gtactcggaa gtcttatctt ccgcacatac
     6721 caaatgcccg aaagattatt caggtaaatg atggtggtga tgagtacgaa taaaagccat
     6781 tttgttgttc tccaaactaa attgctttaa aagatacgct taaattttgg caatgacaag
     6841 tgttttttgc gaaaaaattg ctatttttca tctctctaaa acaactatcg caaacgtttg
     6901 cgtaaagcgg tataatttgc ctgatttttt gcaaattcaa caaagtagga ataacactat
     6961 gcaaatcagc ctcaaaaaga tctactccgg caaagtccgt gatctctacg aaatcgatga
     7021 aaaacgtatg cttatggttg ccaccgaccg attatctgcc tttgatgtta ttttagacga
     7081 tcctattcct cgtaaaggcg aaatcctcac ccaaatctcc aacttctggt tcaacaaatt
     7141 agcccacatt atgccaaacc acttcaccgg cgacagtgtg tttgacgtgt taccgcaaga
     7201 agaggcagaa gctattcaac atcgtgcggt ggtttgcaaa cgcttaatac cggtgaaaat
     7261 tgaatcgatt gtgcggggtt atttaaccgg ctccgggctg aaagattacc aacaaaccgg
     7321 cacgatctgc ggcttaacat tgccggaagg cttggttgag gccagcaaat taccgcaacc
     7381 gatcttcaca ccgtccagca aagccgaggt gggcgatcac gatattaata tcagctacga
     7441 agagtgtgaa cgccagatcg gtcaagaact tgccgccaaa gtgcgtgatg ccgctctaaa
     7501 actctacact gaagcggcaa actatgccct gaccaaagga attattattt gcgacaccaa
     7561 attcgaattc ggcttagacg aaaacggtga actaacgcta atggacgaag tcctaacccc
     7621 ggattccagc cgtttttggt cagttgaaac ctaccgagaa ggcacaaatc caccttcatt
     7681 tgataaacaa ttcgtgcgtg actggctgga aaatagcggt tggaacaaac aacccccagc
     7741 cccgaaaata ccggcagagg taattgaaaa aaccgtagcg aaatatcaag aagcattgga
     7801 tttattaacc aaataacacc acaagcggtc aaatttacgc tattttttgc aaaacaaaaa
     7861 cctgtaagcc aacacttaca ggttttttag ttagtggtaa aaagtgcggt tattctaccg
     7921 cacttttgca aaattttgtg taaatctgac cgcttgttag ccttgcgaag aaatacgttt
     7981 catatctgtc atataaccac gtaattcttg accgattaac tcgattgggt ggttacggat
     8041 tgcgtcattc acatcacgta aggtaacgtt gtcgatttcc actgccggag ttggttcacc
     8101 taaatcgcct ttctctaacg ttgggataat tttctccgct aaaatcgggg ttgcaacgtg
     8161 agagaataag tagttaccgt attctgcggt atctgaaatt accacgttca tttcatataa
     8221 acgcttacga gcgattgtat ttgcgattaa cggtaactcg tgtagagact cgtagtaagc
     8281 cgattcttca taaataccgg ctgaaaccat tgtatcaaag gctaattcaa cccctgcttt
     8341 caccattgca accattaaca caccgttatc aaagtattct tgctcagaaa ttttaatacc
     8401 gtctgcttgt ggtgcgtttt caaaggctgt tttacctgtt tcttcacgcc attttaataa
     8461 gttggcatcg ccgtttgccc agtctgccat catcgttgat gagaactcac cactgatgat
     8521 gtcgtccata tgtttttcaa ataagaacgc taattcttct ttgatttgct cagaaagctc
     8581 gaacgcacgc aatttggcac tgtttgataa gcgatccatc attaaggtga taccgccttg
     8641 ttttaacgct tcggtaatgg tttcccaacc gtattggatc aatttacctg cgtaagccgg
     8701 atctttacct tccgacacta atttgtcgta gcacacgatt gaacctgctt gtaacatacc
     8761 gcaaagaatg gtttgttcac ccattaaatc agatttcact tctgctacga atgaagattc
     8821 taatacgccc gcacggtcac caccggtagc acttgcccac gctttcgcaa tggctaaacc
     8881 ttcgccttta gggtcatttt ccgggtgaac ggcaattaag gttggcacac cgaaaccacg
     8941 tttgtactct tcacgcactt ccgtgcccgg gcatttcgga gcggtcatca caaccgttaa
     9001 atccggacga atttgctcac cttcttccac aatgttgaaa ccgtgtgaat aaccaaatgc
     9061 cgcaccttgt ttcattaacg gcattacatc ggcaactact ttagagtgct gtttgtccgg
     9121 cgttaagtta atgactaaat ccgcttcagg aattaattgc tcgtaagtac ccaccacaaa
     9181 gccgttttca gaagcacgtt taaatgaagc acgtttttca gcaatcgctt cggcacgtaa
     9241 agcgtaagca atatctaagc ctgaatcacg catatttaaa ccttggttta aaccttgagc
     9301 accacaaccc acaatcacga tttttttgcc ttttaagaaa ttgcagccat ctgcaaattc
     9361 atcacgatcc ataaagcggc aacgacctaa ctggtctaat ttttgacgta aatttaaagt
     9421 gttgaaatag ttagccattt tttaatcctt atttgaatta atgagattga tatgatgttt
     9481 tgtttgcaca ttgttatagt ttgatttgat tataccttaa cctaacattg cgtaaattga
     9541 aaatattaat atttcatatt gcataaaatg caacttgcaa aaattttgcc aaatttaacc
     9601 acttgcaatc tctacgataa agtagaaaat aaccacctaa tttaatagaa gatcaaaaaa
     9661 tgaaaataaa cagaatcatt ttacaaagct gtagcgaatg tgggcaacaa gtgcgagtcc
     9721 cgctcacgtc aaatggcaat gccgtttgcc cggtctgcca taatatatta cgcaaaagca
     9781 atacttggag cttgcaccgt agtgcttttt tggcattagc cattttaatt ttgcttccct
     9841 tcgcacttac ttttcccttg atgagcattg acttactcgg catcaaaatt aatgctaccg
     9901 tatgggacgg tatttggaag atggcaacgg agggctaccc ttacaccgct tttatggtgc
     9961 tagtctgcgc ggtaataatg ccgattgcat ttgtattgct aattttaacc attcagctac
    10021 aacgtattat tcgccaacgc ccccgttaca cgctgatttt cttaactaaa ataaaagaat
    10081 gggtaatgct tgatgtctat ttagttgctc ttgcggttgc cgcttttaaa attcgagatt
    10141 atgccgatct acaattcgat atcaacttaa tcgcctttgt gttggtaaca ctcttaaaca
    10201 ccctactttt tattaaaacc gagccaaaac aagcatggga acgtttttac ccagaatatc
    10261 acgccttgcc gtttgatcac ccaagcaatc caacactttg cccgacctgt gaatattgct
    10321 ttgatgaaac tattttagac ttaaaaggac ggcaacgctg ccctcgttgt gaaagcaatt
    10381 tatctatttc cgacaacgta aaaatacaac gggtttgggc ttgcttaatt gcagggacta
    10441 ttatgatgat tccggcaaat attttcccga tttcgacaac tgaactggca ggtcaggttt
    10501 cggcagattc attaatgtcc ggcgtgcttc tgtttatgga aatgggtagc tacaccgtgg
    10561 cagcgattgt gtttatcgct agtattgcgg tgccggtgag caaaattacc attatttttt
    10621 atctcttgct ggcaattcat tacaagtgga aacacccgat tcattggcaa atgaaactac
    10681 tacactacgt ccattttgtc ggacgctggt caatgctgga tttattcgtg ttatcattga
    10741 tgatgtcgct actcgaacga gggcagattc tcagtttctc ggtaggggaa gccgctttct
    10801 attttggagc agccgtattc ttaacgatgt ttgcctctgc aaatttagat tccagaatgt
    10861 tgtggaagat tcatactgtc cagaaaacat cctaaataaa gattttccga taaataatac
    10921 ataacatgca aagtaagaaa agtagtacgt aacccaaaat ctcaatccct attgagtaag
    10981 aaagagccga taatgtagca ccgatagcca gaaagaaatt agcaaatata aaatagtctt
    11041 tactatattt acttgaggca attagggtat ccattgcagt actaaagaac atttccaa
//
LOCUS       DANLXB010000085        11093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLXB010000085 DANLXB010000000
VERSION     DANLXB010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            230..478
                     /gene="rpsP"
                     /locus_tag="PXD41_001459"
     CDS             230..478
                     /gene="rpsP"
                     /locus_tag="PXD41_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL6288984.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            511..1038
                     /gene="rimM"
                     /locus_tag="PXD41_001460"
     CDS             511..1038
                     /gene="rimM"
                     /locus_tag="PXD41_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL6288985.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            1083..1838
                     /gene="trmD"
                     /locus_tag="PXD41_001461"
     CDS             1083..1838
                     /gene="trmD"
                     /locus_tag="PXD41_001461"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL6288986.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            1865..2215
                     /gene="rplS"
                     /locus_tag="PXD41_001462"
     CDS             1865..2215
                     /gene="rplS"
                     /locus_tag="PXD41_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL6288987.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            2371..2727
                     /locus_tag="PXD41_001463"
     CDS             2371..2727
                     /locus_tag="PXD41_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288988.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            2729..3052
                     /locus_tag="PXD41_001464"
     CDS             2729..3052
                     /locus_tag="PXD41_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6288989.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(3062..3394)
                     /locus_tag="PXD41_001465"
     CDS             complement(3062..3394)
                     /locus_tag="PXD41_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6288990.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(3487..4683)
                     /locus_tag="PXD41_001466"
     CDS             complement(3487..4683)
                     /locus_tag="PXD41_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL6288991.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(4832..6175)
                     /gene="accC"
                     /locus_tag="PXD41_001467"
     CDS             complement(4832..6175)
                     /gene="accC"
                     /locus_tag="PXD41_001467"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL6288992.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(6247..6714)
                     /locus_tag="PXD41_001468"
     CDS             complement(6247..6714)
                     /locus_tag="PXD41_001468"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL6288993.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(6967..7749)
                     /locus_tag="PXD41_001469"
     CDS             complement(6967..7749)
                     /locus_tag="PXD41_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL6288994.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(7759..8196)
                     /gene="aroQ"
                     /locus_tag="PXD41_001470"
     CDS             complement(7759..8196)
                     /gene="aroQ"
                     /locus_tag="PXD41_001470"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL6288995.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(8282..8650)
                     /locus_tag="PXD41_001471"
     CDS             complement(8282..8650)
                     /locus_tag="PXD41_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6288996.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(8710..9534)
                     /gene="dapD"
                     /locus_tag="PXD41_001472"
     CDS             complement(8710..9534)
                     /gene="dapD"
                     /locus_tag="PXD41_001472"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL6288997.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            9682..10344
                     /locus_tag="PXD41_001473"
     CDS             9682..10344
                     /locus_tag="PXD41_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL6288998.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            10341..11093
                     /locus_tag="PXD41_001474"
     CDS             10341..11093
                     /locus_tag="PXD41_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6288999.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
BASE COUNT         3181 a         2240 c         2383 g         3289 t
ORIGIN      
        1 ttatgatatt ttaaacattt tctgatggtt agaacaattt ttattagtaa tttgtataaa
       61 aaaacgctaa atgtatcttt ctttaaaaga gtcatatcaa tgaatctccc ttgtctttcc
      121 gcaaaaaatc tgtataattt gaccgcttgt tttctctttt gaaacaagtt cgttaccctc
      181 acctcgaacg agggtttatt ttttactatc aacatttaga ggaaaggtta tggtaaccat
      241 tcgtttaact cgtggcggag ctaaaaaacg cccattttac caaatcgtgg tagtggacag
      301 ccgttcacct cgtgatggtc gctttatcga gcgtatcggt ttcttcaacc cattagcagc
      361 aggtcaagct gagcgtttac gcttagatgt ggctaaagta gatgcttggg ttgctaaagg
      421 tgctgattta tcagaccgtg ttgcttcttt agtaaaagaa gctcgcaaag cagcttaatt
      481 tttaagccaa aattaaataa gtaggtgagt atgagcgaac aaaagatcga agttgtcgga
      541 aaattaggtt caacctatgg tatccgtggt tggttgcgtc tctattcatc gacagaacaa
      601 actgagagca ttttcgacta ccagccgtgg tttttaaaaa ttaaaggtca gtggcagcag
      661 gtcgaattag aaagctggcg ttatcatagc aatgatttga ttgttaaatt gaaaggcact
      721 gaagaccgtg aagccgcaca gttattaacc aacgctgaaa ttggcgtgga tttgtctgtg
      781 tttcctgaat tggaagaggg agattactat tggcacgatt tgatcggctg ttcggtagta
      841 aacttagagg gctacacaat gggaacagtt gccgaaatga tggaaacagg ttcaaatgat
      901 gtgcttgtgg tgcgtaataa cggcaaagat gctttcggta aacaagaacg attaattccg
      961 tttttgtatg aacaagtagt taaaagagta gatctcgcca ccaaaaccat tacggtggag
     1021 tgggacgctg gtttctaacc tcaggtatgc ggtgagcttt ggaaaacatt taaggcgtta
     1081 aaatgtggat tggtattatt tcactgtttc ctgaaatgtt taaagcaatt accgatttcg
     1141 gggtgacagg acgtgcagtt aaacaaaatc tactgcaagt tgaatgttgg aatcctcgtg
     1201 attttacatt cgataaacat aaaactgtag atgatcgccc ttatggcggt ggtccgggaa
     1261 tgttgatgat ggtgcaacct ttgcgtgatg cgattcacgc agcgaaaaag gcggcattag
     1321 cagtagaagg cggtgaagct aaagtgattt atctttcgcc gcaaggacgt aaactcgatc
     1381 aaaacggtgt gcaaacactg gcttcaaatc agaaactgat tttaatttgt ggacgatatg
     1441 aaggcgtgga cgagcgattg attcaaacag aagttgatga agaatggtca atcggtgatt
     1501 acgttctcac agggggggaa ttacctgcaa tgacattaat tgatgcagtt gcaaggtttg
     1561 ttcccggggt attaggcaaa caggcttccg cgttagagga ttctttcgca gagggattat
     1621 tagattgccc acattatacc cgccctgaag tattagacgg tatgcctgtt ccggaagtgc
     1681 tgatgtctgg acaccatgaa caaattcgta aatggcggtt ggaacaatcg ctggaacgaa
     1741 cgtggttaag acgccctgag ctattggata gcctagctct gactgacgaa cagcgtgtgt
     1801 tgttagctaa aattaaaaaa cagcacaaaa tcagttaatt ctaggattat agaaggtttt
     1861 taaaatgagt aacatcatca aacaacttga acaagaacag ttaaaacaag acttacctag
     1921 cttccgtccg ggtgacacat tagaagttaa ggtatgggta gtagaaggta gtaaaaaacg
     1981 tttgcaagcg ttcgaaggcg tggttattgc aattcgtaac cgtggcttgc actctgcatt
     2041 cactctacgt aaagtttcaa atggcgtagg cgttgagcgt gtattccaaa ctcactcacc
     2101 tgtaattgac agcatttctg ttaaacgtaa aggtgcggta cgtaaagcta aactttacta
     2161 cttacgtgag cgttctggta aatctgcacg tatcaaagag cgtcttggcg actaattgct
     2221 acaaaacagt gaaatgcaca aaagccttga ggaaactcaa ggcttttgct ttttgtactt
     2281 acaagcagtt atttttcctc aatgatttac aaatcttgct ttcttttttg ttataatgtt
     2341 aacaagataa cattaatgat aggtgtcgat atgaaacaat taagtattag attgccagac
     2401 gatgaattta cttttattaa aacatttgct tctgctcata aactgacttt acaaaatttt
     2461 gtgatgtccg caatccaagc taaagttgca gaaatgtctg ctaaaaataa aatatctgaa
     2521 gaaagtaaca ttcatcaacc tctttctaaa gatgaaaaaa taatgctaaa tgaggcaaaa
     2581 gtattttatt ctgctcgttc gcatttaaag gcagaaaatg tgattcttcc gagtgatttt
     2641 atggagcaaa ttaaatcagg ctgtggagca gaaaaaatgg cagaaatgat gggatatacc
     2701 aaagaagatt gggagtcaat gaagtaatat ggggcagatt acatttagta atattttcac
     2761 aaaagtgatt tttgagaatg tgctttctgc ttcaactaaa gagaaaataa aacaaatgct
     2821 ttttcagtct gtggttgcat tacctcctct ccattcagaa agaaaaatga ttttacagtt
     2881 gaaaaagcaa aaaattacca ttttttatca agttattgag gaacaatctg tgcaaatcct
     2941 cgcttatcaa tttggtggaa ctgataaatt gacaggtgtg tctaaagctc actttaaaac
     3001 actagatgcc atttttcaaa tgacggatga agagaaagaa ggaaaattct aatgtaagcg
     3061 gttatttttc catatttttt tgcaaataac gtttctcaaa ttttgcttga tggcgttcaa
     3121 gcacttccgt catcgaaatg ccatatttat cggctaatac aaaaagatta tccatcacat
     3181 cgcctaactc ttcgattaag ttatctcgtt tttgctgttg tgaagcttcg gtttcgtccg
     3241 gtcgttcacg cccgatttca atcgctctta ctgcacaagc cacttcgccg atttcttctg
     3301 ctagataagt cacccgcata aaagggcttc gttcatacca accttgttgt tggtaaaact
     3361 ggcgaaccca ttgttgatat tgttcaattt gcattttatt tctgattcaa aaagtaggga
     3421 cgaaaaattt ttcgcccttt tataagaaaa tgtatcaggg caaatgatga tttgccccta
     3481 ggagtgttac tctgcctcag agagaataat ccagccacta tccagccagt cgcaaatggt
     3541 gtctagcatt agctccagct ccgcttggtc ttgcactttg gaggcaagtt tgttccacga
     3601 aatcgaatct ccattggcga tacgaatcag taatgccatt tctgcttcgt ttaactcatc
     3661 aatccactcg ccatttacat aaacccgttg agggttctcg gtgtagagga tttttacatt
     3721 tgcatcttgc tgtaaccagc cgccggcttc gagaatttct tgcacttcgt cagggtaata
     3781 ttcattgtca gtttgcaata attcataacg gcgggagctt gccgcagtgg caacactgtg
     3841 agtgagtaac tcatcgaact gttcggaatt ttggagcaag tcgattaact gatgtttaaa
     3901 cattttcacc attttcggat caagcaacgc attcggctgt tcattcggcg ttaagcggaa
     3961 cggaagatga aattccgatg aattaatgtt gtcggcttgt tgttcgatgg ttttgcagag
     4021 attttccagt aaatcggtcg catttggata acgtaaacca aaagagaaag ttaaaccttg
     4081 ctcgctttcg gaaacaccat agtgagccat tcgagacggc acataaagca catcacccgg
     4141 gttcattacc tcgtccatta ccagttcgcc catatcatca aaaatgcgga tcggttggtt
     4201 tggtttgaat tcggtgcttg gatcgcacca tttgcctaat tgccaacgac gttgcccata
     4261 gccttgcacc aagaacacat cgtactcatc ataatgtttg ccgacagtgc cgttgagcgg
     4321 tgagcaagaa accataatgt catcacgttg ccattgcggg ataaaaccaa aagcctgcca
     4381 aagctcgcct agctcaggag accattgctc gaggttttgc accattacag accattgtac
     4441 aggtaactct tccaaatctt cctcaacaag cgggctggat ttaacagacc atttctcgtt
     4501 ttcgcattga atcaggcgtg cagtgacttc ttcctctaat gccagttcta aaatatcttc
     4561 cggctcaaac aatccgacaa tttggggtaa gccgttacga attaatagcg gtcgtttttg
     4621 ccaatattct cgcaaaaagg tttcagggct gatattttca ggtaagcaga atggaatgtt
     4681 cataatggct ccttgctacg tgcttctttg agattactga tattctaccc gagaaatcag
     4741 gaaaaacggg aaatttttta tgatttagcg acatcattca cattttgaag aggaaataat
     4801 gaaaaaggcg aacattgttc gcctttgaaa tttattttaa accgagtttt ttctcgagat
     4861 agtggatatt ggtgccacct ttgcggaatt ctttatccgc aagaatttga gtatgtaaag
     4921 gaatattggt tttaatgcct tccacaatgg tttcggaaag ggcattttcc atccggcgaa
     4981 tcgcaatatc acgattttca gcaaaggtaa tcaatttacc aatcattgaa tcgtaatgtg
     5041 gcggcacgct atagcctgag taaatatgtg aatcccaacg cacacctaaa ccacccggaa
     5101 cgtgtaaacg ggtaatttta cccggcgatg gcaagaaggt gtttggatct tctgcgttga
     5161 tacggcactc aatggcgtga cctttcactt taatatcatc ttgtgtgatc gaaagtggta
     5221 agccggctgc cacacgcagt tgctctttta ccaagtccac accggtaatc atttcggtta
     5281 cagggtgttc tacctgtaag cgggtgttca tttcaatgaa gtaaaactcg ccgttttcat
     5341 ataagaactc aaaagtacct gcaccacggt agccaatttc acggcaggca ttggcacaac
     5401 gctccccaat aaattgacgc aattcaggtg taataccctg agcaggtgct tcttccacca
     5461 ctttttggtg gcgacgttgc attgaacagt cacgctctgc taaataaacc gcattaccgt
     5521 gagtatcggc aagtacttgg atttcaatat ggcgtggatt ttctaaatat ttctccatat
     5581 acaccatatc gttattaaat gccgctttcg cttcggcttt cgtcattgcg atagattctt
     5641 ccaaatcttt ctcgtgatga accacacgca taccacgacc gccaccacca cctgatgctt
     5701 tgatgatcac cgggtagccg atacgtttag cgatttcttt atttttcttc ggatcgttac
     5761 caaccggacc gtcagaaccc ggtacgcaag gcacgccggc ttttttcatt gcattgatag
     5821 cagagacttt atcgcccatt aagcgaatca catcagccgt tggaccaata aagataaagc
     5881 ctgatttctc aacttgttcg gcaaagtttg cgttttcaga taagaaaccg tagcccggat
     5941 gaatagcatc ggcattcgtt acttcggcag cggcaataat catcgggata tttaaatagc
     6001 tttttaccga tggagcagga ccgatacaaa tggtttcatc ggctaattta acgtgtttta
     6061 attcacggtc ggcagttgaa tgcactgcaa ccgttttaat gcccaattct ttacaagcac
     6121 gcaaaatacg cagggcaatt tcaccacggt ttgcgataac aactttttct aacataggga
     6181 aattccttgt gttctagaaa atgtagggcg tgttgcacac gcccgttgga taatttaagg
     6241 aagagcttat tcaatgatga ataatttttg gtcgaattct accggttcgc catcattaac
     6301 taagatttct tttaccacac cggctttgtc tgactcgata cggttcatca ttttcattgc
     6361 ttctacaata cataacgtat caccgatttt cacggtttga cccacttcaa cgaacggttt
     6421 tgcatctggg cttgggctac ggtagaaagt ccccaccatt ggtgaaagca ctgcgtggcc
     6481 actcgtttct gcggcttttg gtgcttcagc cggagctgca acaggtactg tcgaagctac
     6541 ttgaggtgcc gctggtgcaa caacaggagc tgctgcatat tgaactgcag ctggtgcaac
     6601 agctggagca gcacggctaa tacgcaccgt accttcttct tcagacactt ctaactcggt
     6661 aatgccagat tcttcaacta attcaataag ttttttgatt ttgcgaatat ccataataag
     6721 attccgtatg tgattaaata aaataaaaaa gagaactcca catttggggt ataaattcaa
     6781 atgtagagtt aaaaaatgct gggcgtagaa tacctgaatt tcgctaattt tgcgaataaa
     6841 atctgataat tttggcgaaa atggacgatt ttagcattca tcgtaccagt taggattttt
     6901 ggaaaatggt gactcacaag cgattgaaaa ttgccaattt tttgtaaaaa acaaccgctt
     6961 gtcagattat ttcaataaat cttcattttt cttgtaattc cacttgctac cgggcttgtc
     7021 gatatactga aaatattcgt tggtaaaagt accttgagca caagttactt tgtctcggcg
     7081 gaaatttact tctttatcac caatggcatt atttagggtg tcaggaccgg tcataacaaa
     7141 cacgccacct tcaatccgac gattctcaat attgctgata atcagctcaa gggtgtcttt
     7201 tagaatccaa tttccagctt ccgaagccaa gaaaaagttg gtgtatttat cacggcgttt
     7261 aattaacact tcgctatcat tttcgccaat aattttagag agtgggtaaa ccaaatgccc
     7321 gtcaatatca atataaatgc caccttctcg gagcaaagta aaaattcgcc aaaaatcagc
     7381 ttgtgccgca ccatcggtta atttgctata ggcgttaaag gtgcgttcat cggcgttggc
     7441 cttgatgtat gcctctcgtt cttctgtgct aacgtagcga taatcgtagc tcaatgacat
     7501 taggcggtta aacagataat tcgcatacat tggcaaggtg actttgttag aataattcgt
     7561 ttgccaaatg gttttggtaa ttttgctcgg aatgcttgat tggatttttg ccgggctata
     7621 ttccggaatg gtgaaacgtt ttttcggaaa aagtgcatgg aacggataac tcaatatttt
     7681 gacgatatta ccgaataaac ggaagactcc gttacagatc acaataaatt gttcattttt
     7741 aacagccatt ttattacctt atgcttttaa gtgtgaaatt gcaaaatcca acgcatattc
     7801 atagcctttt gcccctaaac cgcaaataac gccttttgca atatcactta gataggagtg
     7861 atggcgaaaa ggttcacggc tatgaacgtt agacaaatgc acctcaacaa acggaatcga
     7921 cacactcaat aacgcatcac gaattgccac gctggtgtga gtaaatgccc cggggttaat
     7981 aataataaaa tcggtatgct gaaaggcttg gtgaatacgg ttgataatcg gctcttcacc
     8041 gttggcttga aagctctcca gctcaacatc ttgggccgca gccaattttt ttaagtggtt
     8101 ttcaatatcc gccaaagttt gcgaaccgta aatttgtggc tcacgtttgc ccaacatatt
     8161 taaattcggg ccgttaagga gaaggatttt tttcatattt acttattcaa cttgtaattc
     8221 ataattaagc cattcacggt tttctttcgc ccccaagcgt tgataaaaac gaataccacc
     8281 gtcattccaa ggattttatt gtcttacaat gatgtgcctt cgcctcattt ttcaaggctt
     8341 gcattaacgc ctctcccact ttctgattcc gagcagtttc atcaacataa agctctttca
     8401 tataaatagc ggggcggttt tgggcagtgt aaggaagaaa ataataaacc aatatgccga
     8461 taatgttaga cgcattttca gccactaaac agtaaaaatc gggtgggctt ttgcgaaagc
     8521 cggattccat tacaacttca ggagtaatcg caaaagaatc gatatagtgc tcaaacacag
     8581 ccagtttttg catcagaggg aacacttggt gggtatcttg ttcgaccatt ttgcggattg
     8641 taaatgccat aaaattcctt acaagcggta aaaaaatccc tcacttttgc aaagcgaggg
     8701 aggttttaat tattcgtcaa tagaacgtaa taagtcgttt aagcccactt tgcttaaggt
     8761 tttctcatcc acttttttca caatcaccgc acagtagagg ttgtgtgaac catcttttga
     8821 tggaagcgag cctgaaacca caacagagcc tgccggcaca cggccgtaat gtacttcgcc
     8881 ggtttcacgg tcgtaaattt tggtagattg accgataaac acgcccattg agatcacgca
     8941 gttatcttcg acaatcacgc cttctacgat ttcagaacgt gcaccgataa agcagttgtc
     9001 gccgatgatg gttgggttcg cttgtaatgg ctctaacaca ccaccgatgc ccacgccacc
     9061 agaaaggtga acatttttac cgatttgcgc acaagaaccc actgttaccc aagtgtccac
     9121 cattgtgcct tcgccaacgt atgcaccgat gttcacgaaa gatggcatta acaccacgtt
     9181 tttctcgata tgtgaacctt tacgcaccac cgcacccggc acggcacgaa tgccatctgc
     9241 tttgaattgc tcttcggtgt agttgccgta tttggttggc actttgtcgt agaatttggt
     9301 ttctgcaccg tcgatgattt cattgtcggc aatacggaat gaaagtaata ccgctttttt
     9361 cacccattgg tttactaccc actcgccatc ttttttctcg gcaacacgca gtgaaccgtt
     9421 gtctaatcct gcgatcacct cttctactgc tgctttggtt tcagcatcaa cggttttcgg
     9481 agtaatttcc gcacggcgtt caaatgccgc ttcaataata gcttgtaaag acattgttgt
     9541 gttccttcaa tatataaatt aaaacagaaa attcggctca ctttttaaca tagaaaggcg
     9601 tttatttcca caagaaaaaa catatcgcag aaatttagtt tataattcca agccacttat
     9661 ttgatacaag cggtgatttt tgtggaaaat tttgcaaatc tgcttaccgg taaaacgcgt
     9721 gagcatttag tgccgttgcc gaacgctctt tcggataaac attaccttca gcctcaggtg
     9781 gttgaggctt ttttgacgtt gcagcatgct gcaaaacaag ccggctttaa tttacagcct
     9841 gccagtactt ttcgtgattt tgaacgccaa aaagggattt ggaatgcgaa gtttaggggt
     9901 gagcgtaagg ttcacgatga taacggggtt gcgattgata tggcggcgtt atcggatctt
     9961 gaaaagtgca aagcaatgtt gagatggtct gcggtgccgg gggcaagtcg gcatcattgg
    10021 ggaacggaaa ttgatatttt tgaccctgat ttattgccgg aaaatacgcc tttattgctt
    10081 gagccgtggg aatatttgga aggtggctat tttgccgatt taaccaagtg gttacacgtt
    10141 aatgcggaaa catttggctt ttatttcccg tttgacggta aacattctcg agtgggcttt
    10201 gagccgtggc acattagcta tcgcccgatt tcaaatgaat atgagcaacg ctttaacgat
    10261 gaaatcttaa aagctgcgtg gcaagatgaa gaagtggcgg gtaaggaatg cttacttgaa
    10321 cattttgaag aattactaaa atgatccaat taattaacga aacccaacaa cacgacaaat
    10381 tccgccaaat ttgcgacaaa tggcagctgg ttgaagataa atccagcccg ttagccttag
    10441 tgctaacgga ggaacgattg gaactacgca aattagacga acccaagctc ggggcgattg
    10501 cagtgaattt tgtggacggt acgatggcac atcggcgtaa attcggtggt gggcgaggtg
    10561 aagccgttgc gaaagcggtc ggcattaaag gggattattt gccaactgtg attgatgcga
    10621 cagccggttt agggcgagat gcttttgtat tagcagcggt tggttgtaaa gtgctgttag
    10681 tggaacgcaa tccaattgtc gctgccttgt tggaagatgg tttaaaccga gcttatcaag
    10741 atgtggaaat cggcagtttt atgcaagaaa gaatgatctt agccgatgtt cgagacattt
    10801 ctcagctaga tccacaatcc caaatggctg aggtagtgta tttagatccg atgtatccgc
    10861 acaaacaaaa aagtgcgttg gtgaaaaaag aaatgcgggt gtttcaacat ttagttgggg
    10921 cagatttaga ttcggacagc tttttcttac cggcaaaagg attggcaaaa aaacgtgtgg
    10981 tagtgaagcg tccggactat gccccgtttt tagcggagca aaagcctgat ttttcacaca
    11041 ccaccaaaaa tcaccgtttt gatgtttatc tttctcacct gaaaaatgat taa
//
LOCUS       DANLXB010000086        11021 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLXB010000086 DANLXB010000000
VERSION     DANLXB010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11021
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            76..1053
                     /gene="manX"
                     /locus_tag="PXD41_001475"
     CDS             76..1053
                     /gene="manX"
                     /locus_tag="PXD41_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL6289000.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            1065..1865
                     /locus_tag="PXD41_001476"
     CDS             1065..1865
                     /locus_tag="PXD41_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL6289001.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            1879..2715
                     /locus_tag="PXD41_001477"
     CDS             1879..2715
                     /locus_tag="PXD41_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL6289002.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            2808..3293
                     /locus_tag="PXD41_001478"
     CDS             2808..3293
                     /locus_tag="PXD41_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL6289003.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(3379..4170)
                     /gene="tpiA"
                     /locus_tag="PXD41_001479"
     CDS             complement(3379..4170)
                     /gene="tpiA"
                     /locus_tag="PXD41_001479"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL6289004.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            4330..5244
                     /locus_tag="PXD41_001480"
     CDS             4330..5244
                     /locus_tag="PXD41_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL6289005.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            5415..6203
                     /gene="surE"
                     /locus_tag="PXD41_001481"
     CDS             5415..6203
                     /gene="surE"
                     /locus_tag="PXD41_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL6289006.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            6190..6774
                     /locus_tag="PXD41_001482"
     CDS             6190..6774
                     /locus_tag="PXD41_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6289007.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            6792..7292
                     /locus_tag="PXD41_001483"
     CDS             6792..7292
                     /locus_tag="PXD41_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL6289008.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            7305..7505
                     /locus_tag="PXD41_001484"
     CDS             7305..7505
                     /locus_tag="PXD41_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289009.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            7524..8804
                     /locus_tag="PXD41_001485"
     CDS             7524..8804
                     /locus_tag="PXD41_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6289010.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            9045..9236
                     /locus_tag="PXD41_001486"
     CDS             9045..9236
                     /locus_tag="PXD41_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289011.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            9229..9795
                     /locus_tag="PXD41_001487"
     CDS             9229..9795
                     /locus_tag="PXD41_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL6289012.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(9842..10072)
                     /gene="acpP"
                     /locus_tag="PXD41_001488"
     CDS             complement(9842..10072)
                     /gene="acpP"
                     /locus_tag="PXD41_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL6289013.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(10259..10936)
                     /gene="rpe"
                     /locus_tag="PXD41_001489"
     CDS             complement(10259..10936)
                     /gene="rpe"
                     /locus_tag="PXD41_001489"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL6289014.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
BASE COUNT         3236 a         2280 c         2306 g         3199 t
ORIGIN      
        1 attgtgtgaa ataattatca tattaaaatc tcgccccagt aaataaacaa cttaaaaaac
       61 cgcaaggagt aacaaatgag cattgctatt atcatagcaa cccatggtgt tgctgcagag
      121 caacttctca aaacaactga gatgttgatt ggtgaacaag aagatgttgc ttacattgac
      181 tttgttcccg gcgaaaatgc agaaacgatt atgggcaaat atcaagcatt ggttgaaggt
      241 ccactatcac actgtgatca agtgctgttt ttggtggata tgtggggagg aagcccattc
      301 aacgccgcaa accgattcca agatggaaaa tcgggtatgg atgttgttgc gggtgtgaat
      361 attcctatgt tagtgaacac ctgtatggct cgtgatgatg tggagtcgtt ggaagaattg
      421 gtggaagtcg cattagaagc cggctcaacc gggattcgtt cacttaatca ccaacctgaa
      481 gtggctgagg tgcaaaccgc tactcctgca caagaaactg cagctgttca acagcctgaa
      541 attgttgatg acggacgtcg tatgaccatt gcccttgccc gtattgatga ccgcttgatt
      601 cacggtcaag ttgcgacggt ttggacaaaa gaaagtaaag tcaatcgcat tattgtggta
      661 aacgaaggtg tagcaaaaga tagtgtacga actactatgc taaaaagtgt tgctcctctt
      721 ggcgtaacgg ctcacgttgt tgatgtacct aaaatgattc gtgtctataa caaccctgaa
      781 tatgccgatg atcgtgtaat gttactcttt accaacccaa gtgatgtctt agccttaatt
      841 gaaggcggtg taccactcaa tagcattaac gtgggcggta tttcgcataa agaagggaaa
      901 caaatggtta gccattctgt ggcggttgat caaaatgata ttgatgcctt caaagcaatt
      961 gatgcgaaag gcgttgaatt agaagtacgc aaagtctcaa gcgatagccg tcagtatatg
     1021 atggatttat tgaaaaaaca taacttaatc taaaggaaat tactatggaa ctttcagcat
     1081 tacaaattgt gcttttattc ctcgttgcct gtatctcagg tatgggctca attcttgatg
     1141 aatggcaaac ccaccgtccg ttaattgcct gtacgatgat aggcttagtg cttggtgatg
     1201 tgactaccgg cgttattgtt ggtggctcat tagagttatt agctttaggt tggatgaaca
     1261 tcggtgccgc tgttgcacca gatgcggcat tagcctctat tgtctcaacc attttagtca
     1321 ttgtaggtcg tcaagatatt tcaactggta tcgccatcgc tattccgctt gcagctgccg
     1381 gtcaagtatt aacctatgtt gtgcgtgcaa tcaccgtagg tttccaacac gcagcagata
     1441 aatcaattga agacggtaac ttaagccgtt tagactggtt acatcgtggt gctttattgc
     1501 ttcaagcaat gcgtattgcc attccggcat taattgtggc attaacagca ggtacagatg
     1561 cggttcaaac aatgttaaat gccattcctg aagtggttac aaccgggctg aaaattgccg
     1621 gtggcttcat cgccgtggtg ggttatgcga tggtgatcaa tatgatgcgt gcaggtcatt
     1681 taatgccgtt cttcttcgca ggctttgtaa ttgcaggctt taccgatttc aatcttgttg
     1741 cccttggggt attaggtacg gttattgcaa tggtttatat ccatatgcac cctaaatata
     1801 acaaaagcca acaggtagtg gtggcagctg caccaaaaaa tgatttagac aaccgtttag
     1861 actaagaggg catttaaaat gacaactgaa atcaaaaaag taacaaaaag cgatttgaat
     1921 gccgttgtac gtcgttcaaa cttattccaa ggttcgtgga actttgagcg tatgcaggct
     1981 cttggttttg cgtatgcgat ggtaccggtt atcaaacgtt tatatccgga tccaaatggc
     2041 ccgggtcgca aagaagcaat taaacgccat tctgagttct ttaacaccca gccattcgtc
     2101 ggtgcaccga ttttaggggt aaccattgct atggaagaag aacgtgccaa cggtaaagaa
     2161 atcgacaatg ccgcaattaa cggtattaaa gttggtttaa tgggaccatt agccggtgtg
     2221 ggtgacccaa ttttctgggg aactgttcgc cctgtatttg ccgcattagg agcaggctta
     2281 gccttaaaag gtgagctttt aggcccaatc ctgtttttcg ccttatttaa catagtgcgt
     2341 ttagccgcac gctattatgg cgtagtgtat ggctataaaa aagggttaga tgttgtacaa
     2401 gatatgagcg gcggtttatt gcaaaaatta accgaaggtg cttcaatctt aggtctgttt
     2461 attatggggg cattggtaca aaaatggacg agcattaacg ttccgcttgt gctttcaacc
     2521 attcaaaaac aagacggtac catcgaagtt accacagtgc aaagcattct cgacagctta
     2581 atgccgggcc tactcccatt attattaacc tttgcttgta tgtggttact tcgtaatcga
     2641 gtaaatgcta tctggattat cctcggtttc tttgttatcg gtatcctcgg cgctgcaacc
     2701 ggtgcattag cttaattgca aaattttctg tgaaaacgac cgcttgaact tgaacattca
     2761 agcggttttt tatacgcttt agcccaaata aattcacttg cttaattatg accaatacca
     2821 tccttattct ctttatttta cttggcttag tattcgccat ttatgaccaa gtttttatgc
     2881 acaaactcaa aggcacaacc ttactggaaa tccgtttaaa aaagcaaaaa acaattgata
     2941 cttggttatt gattggttta atcgtcttgt caattagcta tggcgtacaa aatcaaatcc
     3001 agccttttac actttacctg ctggcgactt gcattattct gtcggtctat ctcgcctttt
     3061 tccgttcccc tcgcttgttg ttaaaacagc acggtttttt ctttgcgaat gtctttttta
     3121 attacgacaa gatttatcaa gtcaatattg cagaaggaaa agcagacgaa aaaattttgg
     3181 taattgattt acatagcgga agaaggctgc ttgcctatgt tgaaaatgcg gaagatcttc
     3241 aaccggtagt ggattttttt ggcggttata aaaaggaaag tgagcagaaa tagtttgcga
     3301 acaaaacaca agcggtcatt tttccctgaa attttgcaaa aaactgagga aaaatgaccg
     3361 cttgtaaaat cggttaaatt aggctttagc agccgctgcc gctttaacga tcaccgcaaa
     3421 agcaggcgct ttaagtgaaa caccgcctac taatgcaccg tcaatatccg gttgagtgaa
     3481 taactctgct gcattggcat cgtttacaga gccaccgtat tgaatgatca cttggtcagc
     3541 cactgcttgc gatttagctg caatatggtc acgaataaat ttatgcactg cttgtgcttg
     3601 tgccggagtc gctgatttgc cggtaccgat tgcccaaatt ggttcgtaag caataactgc
     3661 accgttgaat gcttccacac cgtgcgcgtt gatgaccgca tcaatttgtc ttgcacacac
     3721 ttcttcagtt ttacctgctt cattttcggc ttcagattca ccgatacata atacaggcac
     3781 taagccggca tcttttaata ctttgaattt ttgagcaata aattcatcgc tttctttgtg
     3841 gtaagtacgg cgttctgaat gcccgataat aatatatttt gccccaaact cttttaacat
     3901 ttcaggtgaa atatcaccgg tgaatgcccc ttttacgttc acatcaacgt tttgtgaacc
     3961 aagtgcgatt aagcctttat cactgcaacc acagccacaa ccggcaagtg atgcttcagc
     4021 gtgtgccaaa tacatcaccg gtggagcgat tgctacatca cagccttcaa cgccatgtaa
     4081 ttctgctttt aaatctgcaa ttaaggtttt agtaaacgct ttatcaccgt ttaatttcca
     4141 gttacccatt acaagtggac gacgtgccat tttgtttctc ctatatgaag ttgaacttaa
     4201 atataaacgt tgcaaactat accaaatttt aatgtcgttt tgttgttttt attttgcttt
     4261 ttctgatcta gatcgaaagg tttaacgtat aatgccgaaa tcttattttt tatgttattc
     4321 gagaagtgaa tgaaactgaa ttatttatac tctcctcctc aagctgttgg gcgactaaaa
     4381 gccgaatatg cagactttat tgtgcgtgaa gaactgggct acgaactagc cggcgaaggg
     4441 gaatttgtgg cggttaaaat ccgcaaaacc aacgccagca cgctgtttgt gggggaaaag
     4501 ttagccaaat ttgtcggtat ttccgagcgt gaaatgagtt atgcaggctt aaaggaccgc
     4561 cacaaccgca aaattcgtgt tggttcgctc gccggcaatc attttgaatt attgctacgt
     4621 gatgtagcag aaagcgaaga gttgatttac cgtttgcaac agttgcaagc ggtcggattt
     4681 cccaattatt ttaccgaaca acgtttcggg cgagacggac ataacctgac tcaagccttg
     4741 cgttgggcaa acggggaaat tagcgtgaaa gatcgcaaaa aacgcagttt ctacctttcc
     4801 gctgcccgct cggaagtgtt taatttagtg gtttcacagc ggattaatga ctgcttaacc
     4861 caaaaaatct tggagaatga ttacgttcaa cttgccggct ctaacagctt tttctgcgtg
     4921 aaatcggacg aaattgctga aactcaagcc cgtttagcac agcaagatct acttctcacc
     4981 gctccgctga taggcgaaag atcgcttgaa ttagaatgca atcctgctga aaaagccatc
     5041 atagagcaac acgctcaatt ggttgcctta atgcaaaaag agcgtatggc agccgctcgg
     5101 cgagcaatgc tttgtaagcc acaaaatctg gaatggcaat ttgaacaaga agggctacgg
     5161 ttaaaattct ttttagattc aggcagttat gccactgcac tggtgcgaga gttaattctg
     5221 cttaccgaag agagcgaagc ttagtccata acacataaca agcggtaaga ttttaatcat
     5281 tttttgcaat ttgcaaaact ttaacaaaat cttaccgctt tttgcacttt tagactaaaa
     5341 aaactgtcga aaaattgtta gaattgcgat ctttgtattt agagtctatc aagatgtaag
     5401 atctaaagga aattatgcga attttaatta gtaatgacga tggttttcac gctgtcggca
     5461 ttcaaacttt agccaaagcc ttgcgagatg caggccatat cgtcaccatt attgcaccgg
     5521 atcgtaaccg cagtgcagct tcaagctgcc taaccttagt agatccactt cgggtgcatc
     5581 gttttgatga atataattat gcggtgatcg ccggcacacc tgccgattgc gtgcatttag
     5641 ccttaaacgg cttgtttgac ggcaaatttg cagaaaaatt tgatttggtg gtctccggca
     5701 ttaatcacgg ggcaaattta ggcgatgatg tggtttactc cggtacggta gcggcagcat
     5761 tggaaggccg ccacttgcca ttaccaagta ttgcagtatc actggttggg cgtaaacact
     5821 cttcgttttt agacggtgaa aatcattttg gaacggcagc acaggtagtg ttagatttat
     5881 tggaaaaaat ggaaacgcaa cgttttccat caaaccacgt tctcaatgtt aatgtgccga
     5941 atttacctta ttcagagcta aaaggcacaa tgatcacccg cttaggtgaa cgttcacccg
     6001 ctgcggaaat tgtgaagcaa aaagatcctc gtaatgctga tgtctattgg attggtgtaa
     6061 caggtgaacc actggatgaa agttttggta ctgattttta tgcattaaac cgagattgcg
     6121 tttctatcac accaattcaa gtggatatga ccgctcataa aacgatagca accttaaaag
     6181 gcatttttaa tgaaactgtt tgaaacaatt tatgacaaaa caatgcagtg gtctaagcac
     6241 cgcttcgctg ccttttggtt gagttttgtc agttttatcg aggcgatctt tttcccgatt
     6301 ccgccggatg tgatgttgat tccgatgtcg atggcaaaac cgcaaaatgc gtttaaatat
     6361 gcagtttaca ctacccttgc ttcggttgcc ggtggtgtta ttggttattt tattggctta
     6421 tatgctaccg attgggtgca aggcgtcatc gcaaattggg gaatgcaagc aaactttgat
     6481 aaagcaaaat tgtggtttga aacttggggt gtcgcggtag tatttttagc cggtttttcg
     6541 ccgattccct ataaggtatt taccatctgt gccggtgtaa tgcagatggc gttcttcccg
     6601 tttgtgatta ctgctgcgat ttctcgcttt gcccgtttta ttttggtagc aaaactctct
     6661 gcttggggtg gcaaaaaata tgaacaaaaa attcgccgct caattgaatt aattggttgg
     6721 ggaacaatcg ttttagccgt tgttgcctat ataatttata cattaatgaa ataaatttta
     6781 aggatataaa aatgaaaaaa tcactttttg ttttatctct gatttctttt gctttagtgg
     6841 gttgttcaag caattcgggt gaatccactt ctgcggtaga aacaacagaa gcaaatgcaa
     6901 cttggcaatc agcagatagc attcaaactg caccaatgcc tgcctcgatg aatcaaccta
     6961 ttgccactca gccaacctat cagcagccga cttactctgc accacaacca atttcggcag
     7021 caccagcacc aatgcctgtt tcaagtggta gtgatagctc tcaagttgaa acagtaggga
     7081 actgccaagt ggtgcgtgat gcgaataatg ctcctatcta ttcacaaatt accaaaggct
     7141 gctacacaga aagtcactat acggtaggta aaagtgatac gctttattta atcggttatc
     7201 taaccggcac caatgccaat caaattgcgc agctaaatgg tttaaatacc ggctctccac
     7261 tgaaagtcgg gcaagtctta cgtgttcgtt aataggcaga gaaaatgaac agaacccttt
     7321 tagcatttgc aatttcttgt gcatttttga ccgcttgtag ctcgcctact cagccacaag
     7381 ttgaagatcc aaatatgtta cctgcaggca cattacaacc gattgaaggc tcaggcgcaa
     7441 gccaagacag ttacagttgg ccgtctgata ttcaatcaac gtcaatgcct gacagtatga
     7501 aataatttta ggacaatcat ttaatgaaaa aacaatttat tcttctccct ttagtctctg
     7561 ctgttttggc agcctgttct tcaaacaatc cagcaccggt ggtgaatgct tccggtaata
     7621 acgaattaag cccgggcgtg atgcagcctg ttgatgtgag tgcaggtgca attaattcaa
     7681 gcggtggctg gcagtctgat attcaatctg caccaatgcc aagctcgatg aataccactc
     7741 cggtgcaaac aatgccccag ccggtttcag tgccacaacc tgtggcgact gtaccgcagc
     7801 caattaccaa tccggtgatt accgaacaac caccacagcc gacaaccacg accaaaatcg
     7861 tgaaaaaaac gaaaacggtc gagaaaaaag tggatcaaaa ttttgagatc ccgcgtgatg
     7921 ccaacaatgc cccaatgtac aaccaaattc aaaaagggtt ctacgatggc tctacctata
     7981 ccgtacgcaa aggcgacaca atgtttttga ttgcctatat tgtgggtaaa gatgtaaaag
     8041 aaatcgccgc tcttaataat atgagcgaac cttaccaatt aagcgtaggg caaaaactca
     8101 aaaccggcaa atctgcaacg gaaactatta ccgtggaaga aaaagtcacc gtaccggttg
     8161 aaccacaaat tacctaccaa caaggtgcaa acggcacaac ctatgcttct ggcggtaata
     8221 ttactgggcc ggtaaaagca ggcacagcca acgctgatgt cacgccggtt aataacggta
     8281 ttaaagcaac aactgcaact gctccggcag taactgcttc tgtcggtaca gtaaatgcaa
     8341 cagaggaccg taccgcctcc accattcgtg ctatagatgg cacagcaagt ggtgccgtac
     8401 aaagtagtaa tactgtttct gcaccagctt catcaattaa atggcaatgg ccaaccagcg
     8461 ggcgtgtaat ttcaggcttc tcctcagcag aaggaggtaa taaaggcatt gatattgccg
     8521 gcaataaagg acaagatgta cgtgctgccg ccgcaggtaa agtggtatat gccggtaatg
     8581 ccttgcaggg ttacggtaac ttaatcatca tcaaacatac cgatgatttc ttaagtgctt
     8641 atgcacacaa caatactatt gaagttgatg agcaagaaac ggtgaaagcc ggtcagaaaa
     8701 tcgcgacttt aggtagtaca ggaaccaata cgaataaatt acattttgaa attcgttaca
     8761 aaggaaaatc tgtcgatccg gctcgttatt taccaagaaa ataagagtaa ctttttagca
     8821 taatccgacc gcttgtgtac tacaagcggt caatttttag gaaaattatg caaatgaaaa
     8881 aatatatcgc acacatgata agttcgttac tgctgatagc ttgttcggac taccgagcaa
     8941 caccaactag cccaagcgat gcttacactt gctctccttc ttttcgctac tctttcttaa
     9001 aaaaaacgtg cataccttta ttcagtatag ccgacattca attattggat ccaaccgagc
     9061 cttcacatcg catttatatt ttgttatctg aagatcgatt tcaagccgaa gtcttctcaa
     9121 cgaagctctc tgaatcttct atgttattgg aggcggttaa aggaggctat atttcaaaag
     9181 acggaaaagt tcgtttactc aaaaaagctg aaggttggaa aatttactat gagtgagact
     9241 aaaatacgtt gtgattggtg taaaagcagt gaaatttata tgaaatatca cgacgaagaa
     9301 tggggaaaac cggagtttga cagcctcaaa ctgtttgaga aaatctgcct tgaagggcaa
     9361 caagccggac tttcttggat tacggtgttg aaaaaacggg aagcctaccg ccaagcattc
     9421 catcagttta atcctgaaaa aattgccaaa atgggtgaag aagaaattga tttgttaatg
     9481 caaaacacta gcttaatcca ccaccgagca aagttagaag ccattataaa aaatgcgaaa
     9541 gcttatatca caatgcagca aaatggcgaa gacttcagtc ggtttatttg gtcttttgtg
     9601 aattatcagc cgcaaattaa tgatgtacca acacttgaag ctgttcctgc tcatacagaa
     9661 acctcaaaag caatgtcaaa agcgttgaaa aaacgtgggt ttgtgtttgt aggcgagact
     9721 acttgctatg cttttatgca gtcaatgggg ctggttaatg accatttgaa taattgcgtg
     9781 ttcaaacata aataaacaca aaaaattagg cgaccatttg gtcgcctaac attaattcag
     9841 attattgatt gttttgaacg taatcaattg ctgattgaac tgtagtaatt ttttcagctt
     9901 cttcatctgg aatttcgata tcgaattctt cttctaaagc cattactaat tcaacagtgt
     9961 ctaaagaatc tgcacctaaa tcttcaatga atgaagcttc tggttttaca tcttctgctt
    10021 tcgcgccaag ttgatcaaca atgatttttt ttacgcgttc ttcaatgctc attttgtttt
    10081 tcctatagtg aatatcgcat aagtgcgaga gttaaatagt gtaatcgaaa taagtttaaa
    10141 tacaaccttt tataaaaagg tcaaaccaga ctattcctat acaccagaat atatctgttt
    10201 ttccattcta tcattatgtt tgtgtttaat ctatagagat aaatcaaatt tcatttgatt
    10261 accctacttt ccgtaattca tctcgcattt gtgcaatcac tgcttgataa tctggctggt
    10321 caaaaatcgc agaacctgcc acaaacatat ctgctcctgc ggctgcaatg tcggcaatgt
    10381 tatttatttt cacaccacca tcaacctcta agcgaatgtt ataaccgctc tcatcaatac
    10441 gacgacggac ttctttcaat ttatctaagg tggacggaat aaatgattgt ccgccaaagc
    10501 ccggattcac agacatcaat aaaaccacgt caactttatc catcacataa tctaaatagc
    10561 tcaatggcgt tgccgggtta aacaccaagc ctgatttaca acctaaatca cggataagct
    10621 gtaaatttcg atctatatgt tccgttgctt cagggtggaa tgtaatataa tccgctccgg
    10681 ctttggcaaa atccggaatc aaacgctcaa ccggttttac cattaaatgc acatcaatcg
    10741 ggcattgaat gccgtaatca cgtaaggctt tgcagatcgc cggcccgaag gtcaaattcg
    10801 gcacgtagtg gttgtccatt acatcaaagt gaattaagtc tgcaccggct tttaacacct
    10861 ctgccacatc atcacccaag cgagctaaat cggcagataa aatagacggt gcaattaaat
    10921 aaggattctt actcatattt cctcactatc aaaaaataaa tctacgttag attaccataa
    10981 ttttaacagc gaaaagagtc tctcttccta aaaatccgtt t
//
LOCUS       DANLXB010000087        10910 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLXB010000087 DANLXB010000000
VERSION     DANLXB010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10910
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            73..468
                     /locus_tag="PXD41_001490"
     CDS             73..468
                     /locus_tag="PXD41_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6289015.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(678..2837)
                     /locus_tag="PXD41_001491"
     CDS             complement(678..2837)
                     /locus_tag="PXD41_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6289016.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARLSSQKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
     gene            2944..3810
                     /locus_tag="PXD41_001492"
     CDS             2944..3810
                     /locus_tag="PXD41_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6289017.1"
                     /translation="MEYKMRTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGK
                     ADKLVGVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQI
                     KASGIPLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHS
                     TDKEVLVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADV
                     ILLASRNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYA
                     HQILTTIQPCLK"
     gene            3821..4807
                     /locus_tag="PXD41_001493"
     CDS             3821..4807
                     /locus_tag="PXD41_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6289018.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            4807..5613
                     /locus_tag="PXD41_001494"
     CDS             4807..5613
                     /locus_tag="PXD41_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289019.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(5634..6272)
                     /gene="purN"
                     /locus_tag="PXD41_001495"
     CDS             complement(5634..6272)
                     /gene="purN"
                     /locus_tag="PXD41_001495"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL6289020.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(6379..8536)
                     /locus_tag="PXD41_001496"
                     /pseudo
     CDS             complement(6379..8536)
                     /locus_tag="PXD41_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(8590..9426)
                     /locus_tag="PXD41_001497"
     CDS             complement(8590..9426)
                     /locus_tag="PXD41_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL6289021.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            complement(9584..10846)
                     /locus_tag="PXD41_001498"
     CDS             complement(9584..10846)
                     /locus_tag="PXD41_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL6289022.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
BASE COUNT         3244 a         2313 c         2001 g         3352 t
ORIGIN      
        1 actttatata aaactcactt tctaaacaat acgttatctg aactaagata acgcttattt
       61 aaaggaaaat atatgaaaaa attgatgata ttcgcaacaa ctgccatgat tgtaagcaat
      121 ttagcccatg cagcaggtga acaaagtgat gcaagagaag cccacgaaag caccgtaaaa
      181 acctcaactg ttaagtatag ctgccaaaac ggcaaaaaat taagcgtgaa atacggcttc
      241 aataaacaag gcattccaac ctatgctgag gcaaaattaa gcggtaaaaa acgttttatg
      301 ccgatcaacc tatacacgac agatgcaacc ggcactaact ttggtgacga aaacaatttc
      361 agcctttacg gtgatccaat ggaatttacc aaccaccgta aagcatcagt aaatatccaa
      421 agccccgcaa gtgaaatttt atataaaggt tgcacacctc aaaaatagat aaaaagtaaa
      481 atgagtccgc tctgataagt ggctttttaa tagctgttta ttgcagatag gaaagcattt
      541 tgtttttatc tactatccag aaacaagcgg ttaaatttgt ttaatttttt acaaaaaatg
      601 ggccaaaatt aaccgcttgt ttattactat aaagaaataa gtacgtaaaa attaactctt
      661 acatttaatg cttatctcta aaatttaaac tccactgatg ccattacata gcgctctgga
      721 gcaaggtaac gatttaagcc ttcgccagtt atactgttgg caactccagg actagttata
      781 ccaatagttc ttaaactatc ccaagtccaa tattttttat taaagagatt ataaacccca
      841 actttaacaa tcgctctttc tccaaacttt ttgtgtgcaa ctaagtcaaa tacggtggct
      901 gaattactta agtatgggta agtggttaat gatttatcgt aacttaaata cccagtattg
      961 gctaaaatag catactgttg tgcatatttt gcttttttgc cttgtgtgta tgtgccgttt
     1021 aggtgtatcg cccagtcatt gttcacagct cgataaccta tgccgaacaa tgcttttaac
     1081 ggttgaaccg tgagtaagtc ggtaccatca ttacgtttgc cacgagcata accaaatcca
     1141 ccattaagct caaagccttg tggaattgca ttccacgctg tgtttaagtc taaagttccg
     1201 ttaatatcaa cacctttgat tttagctcgg ttaacatttt gcgattggta aatattgtta
     1261 ccaatagtgg caagatcaat cagatttcta tagtgggtat ggtaagcggc tacgctcaag
     1321 ctacctaatg aaccattacc taccagtgaa atttcattac ctaagcttgt ttccggtttt
     1381 aagttagtat ttgctaagaa agtttggctt gctccacgcc cttgaacttc acggttaaag
     1441 aacatttcac ttgcggtagg tgttctaaaa ccacggctga gtttatagcc aatttgccat
     1501 acaggagaga gctgataatt taaaccaata tctcccgccc aattgttaaa ggttttatct
     1561 gacaaactat tatcatcaga atgtaatttc tgactgctca atcgagcatt taaatgagca
     1621 gatagatttt gtgtcagtaa aatagagtct cccatcaaaa tatggaaaga cttggttttt
     1681 gccggagact gcatattttg atcggttggc gtaatacctg ctgtataggt ttgcatatca
     1741 aaactgaaat cagatacacc atagcctaat tccgttgaca atttatgttc ggtattacct
     1801 agatcaacag gcttgaatgt aacacctaag ctaccttcaa catttttagt attaaaagcc
     1861 cgtttggtat tatctgtttt tgtaccacgg gcaatagtga tttgatcgtt aatacctgaa
     1921 atttcagtat cctgtttggt taccgcaact ttaatatttt caagaatact gttttttgga
     1981 gtgtataaat aagtaacgcc ataagtttca atttcctgca catccaaaaa atcacgtaat
     2041 gtgacggtag aataagaaag ctcttgaccg gcgtttttac tgcgttgctt agaagttttt
     2101 aattcaaggc gattttcatc attccatttt agccctaatt ttgccaagta gctgtattga
     2161 ttatttttgt aaggatttgg taaaccacga ccacttccca taatatccgg acctttagac
     2221 gttgtttgtg tttcgtgtcc ttgacggtgg ctatacataa ccaaagcatc cgcatattga
     2281 ccatccgcag caatacctgc cgtctcaata ttctctttat tttgaccgtt ataggtatat
     2341 ttcaacatcc caccaaattg gcgacctttc attaaaatat cacttacggt tttagtttta
     2401 tagttcacag agccgcctaa tgccccattg cctacttttg tgcttgagcc tttttcaatg
     2461 gttacatcgc tcattaattc agtatcgatt tcagggcgag atttattgta gtaactatag
     2521 cgactaaagg tggcatagtt atttgatgct gcttgcgata tgccatcaac tgttactgcc
     2581 acttgattac cttcaacacc acggatatta aacccttgtg ggccaaagcg gcctgtttgc
     2641 ggaacgccca tatcagtact ataacgtact aaatcttcat tgctcatcac cgcttgctgt
     2701 ttaagtaggt tctcctgctg ctcatttact tcaatagtat ctagttcaat gctactaatc
     2761 tttgtttctt gagctaagga gagttgagaa ataaagggag taatcgctat tgctaataca
     2821 gtttgcttta tttgcatatt ttagatcctc tagttagttt aatccgttta atgttaacac
     2881 tatatcattt taattgaaaa ttgaaataat aataattatt atttaagttt agataaaaat
     2941 caaatggagt ataaaatgag aaccttactt ttttctttca ttgccctatc aatgtgttta
     3001 aataccacaa aggcggcaga aaaaattgtt tcaactgcgg gctatgcttc cgaaattgtc
     3061 gcagcactag gaaaagctga taagttagtc ggtgtggata ccacttcagt taaacctcaa
     3121 acgataatgg agaaaaaacc taaaatcggt tatcgtcgcc agctttctgc tgaaggtatt
     3181 ctctctttaa ccccagattt gattatttta gcccctgatg ccggccctaa cgcagttatt
     3241 gagcaaatta aagccagcgg tattccatta cttcacttag gagagaaacc gagcttagca
     3301 gggattcgtg aggatattca gcaaattgcc aaggcgattg gtgcagaatc agaggcaaaa
     3361 caattaacag aaaccattct ggcagatgaa aaaaaattag ccgacattcg tagccaacat
     3421 tctactgaca aagaagtctt agtgctgatt gacactgcat cgcaaggtat ctttgggcta
     3481 gggaaaaaga gtgtgggtga tcatttctta accttgttaa atctaaacaa tagtttcaat
     3541 gctgagggca ataagccact cgccaatgag gctttagctg caagcaatgc cgatgttatt
     3601 ttattagcct cccgtaatca ggcaaaagaa tctgcaacga tcagtaaatt agcagaatcc
     3661 agcccacaat acgcccaact cacaaataca caagcgggca aaaaaggctg tgtttttgca
     3721 atcaatattt tagatgcctt gggctttggg ccttacactg ctcaatatgc acaccaaatt
     3781 ctcaccacta ttcaaccttg tttaaaataa cggatacgct ttgaaactgc atttaacctt
     3841 aattttcact ttaattatca gcttagtgat ttgtacccat ttaggggcga tgtcattacc
     3901 cctatccgct tggcactgca acaacgctga atgcgaaagt gcagcctata ttttatggca
     3961 aatccgcctg cctcgattac taggggcatt attcatcggg gcagccctcg ctattagcgg
     4021 agcaacaatg caagggctgt ttcgcaatcc gttagtagat ccggggatta ttggtgtctc
     4081 ttcaggtgct gcattggctg cggcattata tattgtggtg attcagccac tactgccgga
     4141 atcaatcagc tattatgctc tacctattgc cgccttttta gggggctggc tggtgacttt
     4201 tatgctctat ttactttctc aacgtaacgg gcaactacat atcgccatta tgctattaat
     4261 tggtattgct ctagctgcat ttagtggcgc tttaaccggc atactgattt atgttgccga
     4321 tgataaccaa cttcgtagtt taaccttttg gagtatggga tctttagcag gtatgaattg
     4381 gcaaatggtg gcaatgatgg ctgcggttgt cttcatttgt agcccactta tttggcggga
     4441 acaccgtgcg ttaaacgcct taacattagg tgaagaagat gcacaataca ttggttttga
     4501 cattgcaaaa gtcaaacgtc gtcttgtgtt ttacgttgcc ttattaaccg gcacaagcgt
     4561 tgcctgtgtt ggggctatcg gctttgtcgg gctggttatt ccacatttaa tgcgtttact
     4621 gggaggcagt aaccaccgcc atttattact caatagtttg gtttgcggtg caatcttatt
     4681 aatgattgca gatactcttg ccagaaccct agccgccccg gcagaaatcc cgattggtat
     4741 ttttaccgcc ttatttggtg cgccattcct tgcagtaatg gtatggaaaa gtgggaaaca
     4801 tatctaatga gcaatttatt aacttgccaa aatttaagca tcgttcatca acaaaaaaag
     4861 ttgctggaga ttcaagaaat tgcctttgaa caaggaaaat ttaccgccat catcggtcca
     4921 aacggagccg gcaaaacaac cttgctcaaa gccttaagcg gtaataatgc acaaactaac
     4981 agtgccgtat tttatcaaca tcaacgctta acagacttaa acggatatgc tctggctcaa
     5041 aaacgggcaa tgctcagcca acagagccaa attgcctttc ccttaaaagt agaagaattg
     5101 gtacaactcg gaagagagcc atatcgccaa agtgaatttg caaaatttaa tgaaaaaata
     5161 accgcttggg ctatggaaac aatgtcttta accgcattaa aagaaagaag tagcatacaa
     5221 ctttccggtg gagaacaaca tcgagcgcat attgctcgag tgctggctca actcgttcct
     5281 gaaccgaatg ccgatttaag cggaagctgg cttttgcttg atgaacccac caaccatttg
     5341 gatattcatc accaatatca gcttttttcc ttactacaaa agctgaaaca acaaggctta
     5401 actatcattg cgattttgca cgatcctgca ttggcaataa atcaagccga tcatatctta
     5461 atgctaaaaa atggagaaaa atttgctgaa atgtccgcta aagccattgc agaaagttgt
     5521 ttattagatg agctgtatga aatgaaaatg ggctgtcgct attgccctca cagcgggcaa
     5581 tattatcttt gccctgcatt agctgaaagt tagggtgcga tgcaccctat cgtttaatct
     5641 tctgcatatc cacaagcagg cagtagttta ccgtctaaat acgctttgcc gtgctgagaa
     5701 actaatctac ccgaacagaa ccactcaatc accaacggat aatatcgatg ttcttgctca
     5761 accactcgag ccattacatc ttcaatctca tcttcaggat aaatcggcac tttagcttgt
     5821 aataccaccg caccagcatc cacttcttca ttcacgaaat gaatagtcgt gccgtgttca
     5881 ctttccccag cctctatcgc tctttgataa gtgtttagcc ctgggtattt aggtaataag
     5941 gaagggtgaa tattgagtat tttgccagca aaatgttgcg taaattcagg cgttaaaatt
     6001 ttcatatagc cggctaatac aattaactca gctcctaact gctcaatttg ttcggcaatc
     6061 gcaagatcca tttccacatt gctttggtaa tctttacgag aaaatacaaa tgtcgggatt
     6121 cccgcctgtt tagctcgaat cagcccatag gcatctgcct tattgcaaat tacaccgcaa
     6181 atttgaccgc ttgtatccgc agatttttgc gcatcaatca ttgcttgtag gttagaacca
     6241 ttccctgaaa ttaaaaccac aaattttttc atattacaca ccggctgaat attcatcgtt
     6301 ctggatatta tgccttgaat ctcaacatca gtacaggaaa gaaaaagggc gtattggtta
     6361 aaataagcca ctttcaagct agaaacgcac ctctgcccct agtgtgtaag ttcgacctct
     6421 ggcactattt gtgaaacgat aggtgtctgt atcatagtca tactcttctg cggtggaaga
     6481 gttatacgca tttaaggcat caagataatt tcggttcatc acattttgta ccccggcttt
     6541 taaggttaaa tgtttattca ctttgtaatt tgcatataaa tcgataatca ccggaatatt
     6601 cggtaactgc tcgtgaataa tgttgccatc ttcgtctaaa tcaataccga cacgtttcgc
     6661 tttgcctgta tatttaaaaa tgctagacag tgttaatttt ttatccagca atttagcccc
     6721 tagctccaaa gtcgcataat cttttggtag ctgggtataa gcttcagtgc caaatccata
     6781 aagaatagtc gcaccttttg aagtgggtgc tgtgctttca gttcgggtat aactaccatt
     6841 gacaaaaaaa gcatcggaat cgtaagccag ctcaacttcc caacctcgat ttttaacctt
     6901 ttcagggtga ttcacataaa tttggaactg tatagcattg gtagcatcac ttgaatttcg
     6961 acatactgtt ggcccacaac catacaacga gaggttatac aaatagtctt taatgcgtga
     7021 gttaaaatat accgctttta gccccaagat atcattattg agtaatacat tatcttgatg
     7081 aatattaaac ccaatctcat aggttttcgc actttctggt ttcaaaaacg ggttcacact
     7141 caagccattt cgactggtat taaacatttc ttgcacatta ggcgaacggg aggtttgttt
     7201 gtaactgaca aaaggttgaa accaatcagc aacctgaaat gctaaagtgg cagaaggatt
     7261 caacttataa tgttttttat taacatcaaa cccaaaagaa gggaaacaat aatccatatc
     7321 atcgctatcg cattctggct tatatccttt taactgatag cgtgaatagt gaagacttga
     7381 atttaaagtg acaatgccgt atttccattc ggtgtctagg taaagggaat caatattttg
     7441 cttacctgcc ggcccaaaag cggcattgct aatcgctcca tcattattct tactttccgg
     7501 taaatcacgg gaatatttat ttccctgact caaaacggct ggtgttattc aaatcaaaca
     7561 tccacatttt gtttttggtt gaggcatctt ctaatgtcca tagttttgca tcatcgtgga
     7621 aatcttgctt agtttctgtt actgctgtta ggaatttcag atcaatccaa tcagattgag
     7681 gctggtaact ggattctaag gaataggtca cactatcaat attacgcccc actaagctat
     7741 ttttatattg acgtccggac aatttaaact ctgaatcttg atttggctta aaggcaattt
     7801 ttcccatata agattcaggg tgatttttta acccttgcat ataagcagaa tccgttgcca
     7861 ttgtgccatt acctcggcga taattttgac tgatactact tttgctaaaa gccaataaac
     7921 tgccaagaga accactttcc agcacatcaa cttttccggc tagtgcaagc attccgtttt
     7981 ttcccagatc attattgcca taattaaaac ggcttaatac gccgacttta tgttgttcta
     8041 gtagaatatc ttcgacatca atcgttttaa aattagcact accggctaaa gcattcaatc
     8101 cggctgcacc attgttgtag cctttcgcaa tatcaactcg ggttaaaaaa ttttgatcaa
     8161 ttaaagtgct gaattggctc attggcccgt taccatcagt gtggaactta ccacctccgt
     8221 ttgctgatgt accaagctgt gtttgtggca cgccatcaac taaggtattt acccgaccaa
     8281 gaccactcat attacgaata ttcacactca cgcccccttg ccccgggtca atttgggtat
     8341 agccacctgc gacagaacgg acaatactat ctaaactttg cattgcattc acattcattg
     8401 ctcgagaact caccgagccg gctttactga aattctcaaa attagggttt tccacagtgc
     8461 cataaaccgt cacagtatca agctccgcaa tatttttcgc cttttcctct gccaatgcag
     8521 tttgcgatcc tcccatacac aaaaccggaa acaaaatgcg tgtgattata ttaaatttca
     8581 taattctcct tattgagtga cccaaagata atctgcctgt gaagaagtaa tttcttctct
     8641 ctctgtttta agcattagca ccgctacttt ttttgttcgg tcatattccg caatatgcaa
     8701 cggaacgcca agatctttgc gaacgtggtg gttacctgca atcagcaagc tagtcgataa
     8761 cgcatttttt actaattttt ctgccattct gcgatcacgg aattgttgta ctgccaccat
     8821 attttccatc gggtaaggca ttccgtgatt cattgacagc aacagttgtg cgatcttttg
     8881 cttaacttca gaggaagtgg atacagaacc ttttaatggc tccgccccat ttaataaaat
     8941 ttcaacctct ttatctgtta agttagtggc tataacacga ctatttgaac ctaagctctc
     9001 taccactaaa tcttgataca tcttccaatc ccatttttgc cattgaattg cctctcttaa
     9061 atccgtggct gataaattaa ccggtcggtt aaactgaatg cgatcaatcg caggctgctg
     9121 atccacattt aacatctcca acgcaattaa atgtaacttg gctttcttcg taagttgatt
     9181 aaataaatac aattcaattt ggtggtgaat taactgagta tgctcctcac caactaaaac
     9241 gtaatcttga gaagatagac gggaaagtag ttcagtaaat gaaatcgttt gattggtatt
     9301 cagatcaata atttggccga tagagtccac gttttgttca ttaagggatt gcgttgaaac
     9361 cgagcagcct aaaagaaaaa aagccataaa aaggctagct aaaaaagagg aaatacgagg
     9421 taacataaca aaaaataaat taatgagaat tattatcatt atgttatgta aaaaaagaaa
     9481 aatcaatcca ttttcagaaa acagataaag aaaatgattg ataaaacaaa aagcggtaat
     9541 atttctaaaa aatattaccg cttgaaaaag tgtaaagttg agattatgcg tacactggta
     9601 aacgtttaca aatgtctaaa actttcgctt tagtctctgc aatcacctgt tcgtgattat
     9661 ccttaccaat gctatctagc acatcgcaca tccagccggc taatgctgtc acctctgctt
     9721 ctttaaaacc acggcgggtc acagaaggcg tacccacacg aatacctgaa gtcacgaatg
     9781 gtttttgagg gtcgttcggc accgagtttt tattcacggt aatgttcgca gctcctaatg
     9841 cagcatctgc cgctttgccg gttaaacctt gttttacaaa gctaacaagg aataaatggt
     9901 tttccgtacc gtttgaaacc acatcaaaac cacgttgctt aaatacctca accattgctt
     9961 ttgcattttt tacaacttgt tgctgatatg ccttaaattc cggctctaaa gcttctttaa
    10021 aacaaaccgc ttttgccgca ataacgtgca tcaatggtcc accttgacca gcagggaata
    10081 cggcagattg cagtttctta tacatttctt catcgccaga tgcagataaa atcaaaccac
    10141 ctcgagggcc ggctaaggtt ttatgggttg ttgtcgtcac gacgtgagcg tgaggaagcg
    10201 gatttggata aactcccgcc gcaattaagc ctgcaacgtg agccatatcc acaaataaat
    10261 atgccccaac ttcatcggca atctcacgca tttttgccca atccataact tgagaataag
    10321 cagagaaacc agcaacaatc attttcggtt tcacttcttg ggcttgtttg cgtaatgctt
    10381 cataatcaat taagccttca tcagtaatgc cgtattgttc tgctttataa attttaccag
    10441 agaagctaac tgaagcaccg tgggttaaat gcccgccgtg cgctaaactc atacctaaaa
    10501 tagtgtcacc cggattaagc aacgccatat atacggctgc attcgcttgt gagcctgaat
    10561 gcggttgaac gttggcataa tctgccccga acaatgcttt cgcacggtca atcgcaagtt
    10621 gttctacaat atccacatac tcacaacccc catagtaacg tttacccgga taaccttctg
    10681 catatttatt ggttaattgt gagccttgag cctgcattac acgtgggctt gcatagtttt
    10741 cagatgcaat taattcaata tgttcttctt gacggcgatc ttcatcttga atggcttgcc
    10801 ataatactgc atcgtaatca gcgatattca tatcacgttt taacattttt ggactcctaa
    10861 taagcttaag taaacgtttg cgtaagttga tttcacgtta ttttacgcat
//
LOCUS       DANLXB010000088        10834 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLXB010000088 DANLXB010000000
VERSION     DANLXB010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10834
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            4..387
                     /locus_tag="PXD41_001499"
     CDS             4..387
                     /locus_tag="PXD41_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6289023.1"
                     /translation="MVFTSYSIKSKKLCPTILALSVSSILSSQATYAEETTAELSEVN
                     VVAKEDVKASIEKKNKEIIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNR
                     VGISIDGVSLFLIQKKIPFINAMVI"
     gene            354..2432
                     /locus_tag="PXD41_001500"
                     /pseudo
     CDS             354..2432
                     /locus_tag="PXD41_001500"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2487..2993
                     /gene="hutX"
                     /locus_tag="PXD41_001501"
     CDS             2487..2993
                     /gene="hutX"
                     /locus_tag="PXD41_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL6289024.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(3073..4290)
                     /locus_tag="PXD41_001502"
     CDS             complement(3073..4290)
                     /locus_tag="PXD41_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL6289025.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            4451..7984
                     /gene="mfd"
                     /locus_tag="PXD41_001503"
     CDS             4451..7984
                     /gene="mfd"
                     /locus_tag="PXD41_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL6289026.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            8147..8434
                     /locus_tag="PXD41_001504"
     CDS             8147..8434
                     /locus_tag="PXD41_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6289027.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            8435..8647
                     /locus_tag="PXD41_001505"
     CDS             8435..8647
                     /locus_tag="PXD41_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6289028.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            8763..9023
                     /locus_tag="PXD41_001506"
     CDS             8763..9023
                     /locus_tag="PXD41_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6289029.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            9024..9413
                     /locus_tag="PXD41_001507"
     CDS             9024..9413
                     /locus_tag="PXD41_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6289030.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            9433..10671
                     /gene="pepT"
                     /locus_tag="PXD41_001508"
     CDS             9433..10671
                     /gene="pepT"
                     /locus_tag="PXD41_001508"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL6289031.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
BASE COUNT         3251 a         2162 c         2475 g         2946 t
ORIGIN      
        1 atcatggtgt ttacctctta ttcaataaag tctaaaaaat tgtgcccgac tatattggct
       61 ttaagcgtta gtagcatttt gtcttcacaa gctacctatg cggaagaaac aacagcggaa
      121 ttatctgaag taaatgttgt tgctaaagaa gatgtgaagg cttctataga aaagaaaaat
      181 aaagagataa ttcagcaaga gttgattcaa aataatcgag atttagttcg ttatagccct
      241 gatgttggca ttgttaacca aggtagacat caaaaaggat ttgctattcg tggagtggaa
      301 gacaaccgtg taggaataag tattgatggt gtctcgcttt tcctgattca gaagaaaatt
      361 ccctttataa acgctatggt aatttaaata catctcgcca atctatagat ccggaattag
      421 ctcgtactat tgaagtatct aaaggtgcag attctttcaa tcaaggtagt ggtaatttag
      481 gcggcggagt taattatcgg acgcttgagc cttatgatat tgttcgtaac ggtaataaat
      541 ttggtgcttt ttatcgcaca ggatatggta ctcgtaataa tgaatggttg aatacattcg
      601 gtgttggata tttaggtgag aaagctgagg cgatattggt ttattcaaat cgccatgggc
      661 atgaaatgaa aagtgcagga ggttatacac ttcctgaaga ttctctacaa actcgctctt
      721 tacgcagtag taaacaaact cctgatgatt ctactcataa tcatcataat tatttagcca
      781 aatttgctta tcgatttaat gataatcacc gcgttggtgt ttcttacagt gggcaaaata
      841 ataaaaatta tattatcgaa gattcagccg ttactattac ttctttttgg cgtgaagcgg
      901 aagaccgtag taaacgtgat acagtaaatg ttttttatga gtatttccca gagtcaaaat
      961 ggatatctct agcgaagata gatgcagatt atcaagatac tgaaacatct gcttataact
     1021 atgaaggtac acgcgctgaa gatgcaacag actggagccc tgctaaacaa agaaaaccaa
     1081 gtgacaataa tattcgtatt tttaatactg aattgaaacg cttaaatttc cgtttagaca
     1141 gccaagcatt agaatttggt aaatggactc atcagctatc tttcaaagcc tctactgcag
     1201 agagagattt cgatgtatta cataaggact cggtttattt atccggtgtt tgggtaaatt
     1261 ctcccgattc tacgatgatg tacccaatta aaacgaaaca gcacactttt tcattgcacg
     1321 ataagattga tttaacgcat gattggattg caacgctagg cattcgttat gattgggcga
     1381 agtatgaaca acaagaactc aatggtcttg tttgtcgtaa ctgcgtaaaa actgacaatg
     1441 cgaaatttaa tcaactaact tgggttaccg gtttagaaaa acatctgact gaggcatgga
     1501 aagtaggata taacattggg acaggcttcc gtattccaaa tgcatcagaa atgtattttg
     1561 attaccgtga taatgctgca ggagcttgga tgtccaatcc aaacctaaaa gcggaacgta
     1621 gtttaagcca aaatttaagt ttgcaaggta gtggcaatgt tgggctgctc tcagttaatt
     1681 tccaccatac taaatataaa gattttttat gggagcaaga aacctgggat gtttaccaag
     1741 catatggtag agagttttgg cgcccggtac agcaaatgca aaatattgat tctgcgaaaa
     1801 tctacgggct agaagtgagt ggtaaatgga atttaaattc agctatgcca atacctgaag
     1861 gctggaagct atttggagcc ttcggttaca gcaaaggtag tatgtctaac ggggcagatt
     1921 tactttctat tcagccgatt aaagccgtag ttggcttaga ttatgaacaa cctgaaggta
     1981 aatggggagt attttctcgc ttcacattct tgggggctaa aaaggcgaaa gatgcaaaat
     2041 atttaaaaac attaccggaa aaatgcctta aagaggatag aacgccaaat ccgtattacc
     2101 cttattgggg ggatgaatat gacattcgtt gtactgaata ttctcacgag acaggtttag
     2161 atacctggaa gcacttaaat gctaaagcct ttgttgtgga tttatacggt ttctataaac
     2221 caactgagaa tattacatta cgtgccggta tttataattt gtttaaccgt aaataccata
     2281 cttgggatac tttacgtggt ttaaatacaa caggtggaat cgttaattct gttggagtac
     2341 gtgaaaatgc aacttacggt ggctatcctg gattacaacg ctattatgaa cctggacgta
     2401 acttctcggc taattttgaa taccgtttct aatttacaaa tttacttaga gagctaagaa
     2461 actctcttta cttaaaggaa catttaatga tatcaatcga acaacaaacc gccttacgca
     2521 atgaattagc cgaaaatccg gggcaaattt tagaaatgtt agcggcaaaa tatcaatgca
     2581 cgctggaaga ggtaatgctg aatttaccgg ctgaaatgct aaaagtaacc gaaggggaac
     2641 gttttgccga agtgctacag caaatccacg aatgggacga tgcgattacg ctgatttcgc
     2701 atacggaaga taccattatt gagtttgtgg gaaagctccc aagcggttca atttctcgtg
     2761 gattttacaa tttcgaacat aaagagggcg gaggcttaca agggcatcta cgctacgaaa
     2821 attgtgccaa aatttatttg ttggatcgtc cttttatggg aaaacgtact gtttcactga
     2881 ttttcattaa taaaaaaggc aacgcaatgt ttaagatttt tgtcggcaga gagaaaattg
     2941 gcggggcatt aaaagagcat caaattaagg cgctgtatca gttgattggc taatctgtaa
     3001 aaagtcatcg aaaaatgacc gcttgtaact tatagaaagg gctacgatat tgaatcgtag
     3061 cccttttcaa tattagccta ccgcttgcgg taaatagcca gcctgaatta aaaacggaat
     3121 gaccataatg ataataccgg caattaacgc aaccactaat gccaaattac caccaatcac
     3181 acggtaaggt aaattcggat attggcgacg tgctttccac gctaagccga taggtaaaat
     3241 cataccatag aacgcaaaga gtaaaccggc gtaacctaat gccttaataa agccgttcgg
     3301 atagaataaa gcgaacagaa ttggcggtgt aaaggtggcg atggtcagcc ataaacggtt
     3361 agtcggtaga tttaagcgtt ttaacaaatc gcccacgcct tcaaaaattc ccatcgaaac
     3421 ccctaaaaat gaggtaatca atgcaagcac tgagaataag cgaaccattt cgcctaaaat
     3481 cgtactaccg gtaatctggc tagtggcttt caccaagccg tttaaggtcg gatcttgtgt
     3541 caaaattgtg gtgaattcat tttggcttaa taccccgtgt gtagcgagct gccacaataa
     3601 ataagccact agcggaattg ccgtcccgat ataaatagat ttacgaattt tgccgatatc
     3661 tgcgtctaaa tagctattaa ttgttcccat aataacgtgg aaaccgaacg cagtgaagaa
     3721 aatgggtata gcagaaataa tgagtaagtt atctaatgga attgctgtca agttttccag
     3781 cttcgcttta ggcagcatca tcagcaacac ggcaataaaa gcaacaattt ttcccaaaaa
     3841 cagtactcgg gttaaaccat caaccgattt cacgccgact accacaaatg tacctaatac
     3901 cgcagtgaag attaaaatgc tgattttcag tttcatatca gcatctgcca tttcaggcat
     3961 tacaccggct aacagtgaac caccaccggt aatataagcc gcaagtaggg cataaagtag
     4021 tacgagcaaa ctgaaagtgg ctaatacacg cccgattaag ccaaagtatt gctcggcaag
     4081 gcttgccact ccaacatctt tttgcggagc ggtttgataa acttccataa ataataaacc
     4141 ggtgtaggcc aataaagccc ataatccgac taagagtaat gcggttgccc caaaacccat
     4201 tcctgcagag gtgagtggca ttgcaagcat tcctgcacca atggtagtgc ctgcaatcat
     4261 taatgcactt cctaaaattt tatttttcat aatatgtgtg agtaagagtt aaaaaagggg
     4321 aacattttat cagaattttt tcgcaatgcg atctagataa cataatttct ccgcttattt
     4381 tgcacaatca gccgtgcttt agtaaactaa gcaacaattt gcaatttttt atttaaaaca
     4441 gaccgcttgt atgtctttaa tttcacttaa tctgccgaaa tctgacggca attttcaaga
     4501 tcatcaaacc ctcggtaacc ttgtcgggca ttccgatacc cttgcgatca gccaagctgc
     4561 ccgagccttt tacggcttga cggtggttgt cacacccgac acccgcacgg cgttacgctt
     4621 ggaaaaagcc ttgcctcagt ttgcagggct gccagtgcaa ctgttccccg attgggaaac
     4681 cttgccttat gacaattttt cgccgcacca agacattatc tccgcccgac tttctgccct
     4741 gtttgaactg caacaagggc gacagcagat tttgctgttg ccgatcaaca ccttaatgca
     4801 gaaggtctgc ccgccgaatt atctcgctaa caatgtgctg ttgattaaaa aaggcgaccg
     4861 tttttcgatt caaaaactgc ggttacaact ggaaaatgcc ggctatcggg cggtggaaca
     4921 ggtgttggaa tatggtgaat acgccgtgcg tggctcgatt ttagacctat tcccgatggg
     4981 agcagaagag ccgtttcgcc tcgatttttt cgatgatgag atcgacagta tccgcacttt
     5041 tgatgtggat aaccaacgca ccaaaacgga aattgccgaa attaatttac tgccggcaca
     5101 cgagttcccg actgatagca acgggatcga gcattttaga gccaaattcc gtgaaaaatt
     5161 cggtgaaatc cgccgtgagc cggagcatat ttatcagcaa gtcagcaaag gcattttaaa
     5221 tgcagggatt gagtattggc agccgttgtt ttttgaggaa atggcaagtc tgtttgacta
     5281 tttccctgcc caaacgctgt ttatcacttt cgccgatatt cagcaaaaag ctgaacaatt
     5341 tcaccaagat acccaaaacc gctatgaaag ccaccgagtg gatccgatgc gaccgctact
     5401 gccgccgagt gatctctggt ttgcgattga tgaggtaaat cgctggctga aaggctatcc
     5461 ccgtttaacg ataacttcgg agaaaatccg taaatcagca gcgaaaatga atgcaaatgt
     5521 ggctaacttg ccggatattg ctattcaatc ctctgccaaa gagccgtttt ctgctttcca
     5581 gcaattccgc caaaaatttg acggcaacat tctgttttcg gtggagagcg aagggcgaag
     5641 agaaaccttg ctggatttgc ttgctccgct tggggtgaag ccgaagcagg tcaattcatt
     5701 agatgaagca caaggtttgc cattttccct gattatttca ccgcttgatc aagggtttgt
     5761 ggtggaaacg ggcgggcacg ggacccgtcc ctacgatgat gaattaaata caaatggcga
     5821 aaatgataat aactacgtag gggcgggtcc tgtgcccgcc cgcaaccttg ccatcatctg
     5881 cgaaaccgac ctgctgggcg aacgtgtgca aacacggcgt gagaaaaacc gcaaagccgt
     5941 caatcctgat accttaatcc gtaatttagc agaactcaaa atcggacagg cggtggtgca
     6001 tttggaaaac ggcgtggggc gttacggtgg cttaaccgtg ctggacgctg gtgggatcaa
     6061 agccgaatat ctcgtgctac attatgctaa cgatgccaaa ctctatgtgc cggttgcctc
     6121 gctccattta atcagccgtt atatcggtgg ggcggatgaa actgcgccgc tacataaatt
     6181 aggcagtgaa gcgtgggcga aaacccgcca aaaagcagcg gaaaaaatcc gtgatgtggc
     6241 ggcagaattg cttgatgttt atgccaaacg agaaagccaa accggttttg cgtttgccta
     6301 cgataaagcg gaatttgatc agtttagtgc cactttccct tatgaggaaa cggacgatca
     6361 gaaaattgcc atcaatgccg taattagcga tatgtgccaa gccaaagcga tggatagatt
     6421 ggtgtgtggc gatgtcggct tcggcaaaac cgaagtggcc attcgagcga ctttcttggc
     6481 agtgatgaac cataaacagg tggttattct tgccccaact accttgctcg cccaacagca
     6541 ttatgagaat ttcaaagacc gtttcgccaa ttaccctgtg aatgtggaag tgctgtctcg
     6601 ctttaaaacc gccaaagagc agaaaacgat tttgcaaaat gtggcggagg gcaaagtgga
     6661 tattttggtc ggcacgcaca aactgttgca agacgatgta gcgttccgtg atcttgggct
     6721 tttagtgatt gatgaagaac accgtttcgg cgtacgccaa aaagagaaaa tcaaacaact
     6781 gcgtgccaat gtggatattc tgaccctcac cgccacgcca attccaagaa cgctgaatat
     6841 ggcactcaac ggaatgcgtg atctctcgat tatcgccagc ccgccggctc gccgactttt
     6901 aatcaaaacc tttgtgcgac aaagtgatga aatggtaatc cgtgaggcaa ttttgcgtga
     6961 aattctgcgt ggtgggcagg tttactacct ccataacgat gtggcaacca ttgaaaattg
     7021 tgccgagaaa ttggctgaac tcgtgccaga ggcaagaatt gtgatcggac acgggcagat
     7081 gcgtgagcgt gaattggagc gggtgatgag cgatttctat catcaacgct ttaacctgct
     7141 ggtttgctcc accattattg aaacggggat tgacgtgccg actgccaata ccattattat
     7201 cgaacgggcg gacaaattcg ggctggcaca actgcaccaa ctgcgtggac gggtcggacg
     7261 ctcgcaccac caagcctacg cctatatgct cacaccgcac ccgaaaacgc tcaccaaaga
     7321 tgccgagcaa cgcttggagg cgatgagtac cattgataat ctcggggccg gttttgcgtt
     7381 ggcgacccac gatttagaaa ttcgtggtgc aggcgaattg ctcggttcgg agcagagcgg
     7441 acagattgaa agcatcggtt tttcgctcta tatggacttg ctcgaaaatg cggtcaaagc
     7501 tttgcaagaa gggcgagaac cgagcctcga tgaaatcacc caacaccaag cggagattga
     7561 attgcgtgta ccggccttat tgccggacga ttatctgcct gacgtgaata tgcgtctgtc
     7621 gttctacaag cggatcgcaa gctcggaaaa tctgcaaagc ctgaacgact tgaaagtgga
     7681 gctgatcgat cgcttcggct tgctcccaga ggcaaccaaa aacctgtttg cgataaccca
     7741 acttcgcttg tcggcacaaa cgctcgggat taagaaaatc gatgccggca ttcacggcgg
     7801 ttatcttgaa tttaaaccga cagcccagcc cgacccaatg aagtttatcg ccttaatcca
     7861 aaaacaacca gcggtgtaca gttttgaagg ggcggtgaag ttcaaattcc gcttagcact
     7921 cgaagacaac cgcaagcggt tagaatttgt ggaaaatttg ctaagggagg ttgtgggcgg
     7981 ataaagcctc ctaaggttgt caatcttgaa aaacgatttt tgcgatctgt atcgtaaaaa
     8041 tcgtttttgt ttattgcgaa tccagtaatt tcatctaggc tgtttataac ttaaaaaaat
     8101 agatgtaaat atattttatt tacaattaaa aaggagtaaa ctggcaatgg aagaaattaa
     8161 tggttttgaa tgggatagtg agaaagctct tcgtaatcaa caaaaacacg gagttagttt
     8221 tatcgaggcg gtaagcgtat tttatgataa taatgcgatg ttaatcccgg atccagatca
     8281 ctcatctagg gaagagcgtt ttttgctact cgggcgtagc aataaagata atctacttgt
     8341 ggttgtgcat tgcgagagaa ataccaacat tcggattatt tcagcacgtt tggcaacaaa
     8401 acgcgaaagt gggcaatata aaggagtaca ttaaatgaga gatgaatacg atttttctaa
     8461 tgcagtgaaa aacccttacg caaaagggct aaaaagcaaa agtgtggtta ctattcggat
     8521 tgaagacgat gttatcagct attttaaaca acttgccgaa gaggtgaatt tgccttacca
     8581 aacgttgatc aatctttatt tgaaagattg cgttgagcag aaacgtaaac cgactattag
     8641 ttggtaatat tatgatttga aatcagtatg ttattgagta tttgagaatg ggttatcttg
     8701 ccagttgtat aaaataggca tatactttgg catatacact atctatcgga gggtaaagta
     8761 agatggaaaa aattgcgaga ttattccgta acgggcggaa ccaagcagtg cgtttaccgg
     8821 ttgaatttga gtttgatgca gagcaagtct atgtttctaa aaaagaaaat ggcgatattt
     8881 tattatcatt gagatcgaga aataccgagc attggcaacg attgtttgag ctattgcctg
     8941 ctgttgtatg tgatgaaaca tttttagata caaaagagag aaaccaatcc tttgagcaac
     9001 gggatccttt tgaggtagct taaatgtata tgttagatac gaatactgta agctattttt
     9061 ttcgtggaaa tgcaaatgtg gtggcgaaat tgaagtccat taatcctgag aggctttgta
     9121 tttcatctgt aactgctgct gaattggttt atggtgtggc gaaaagaaat aatgggcagc
     9181 tttctcaatt tttagattat tttttatcga gtgtaaaggt tttagattgg aattatcgtt
     9241 gtgctgaact ttatggaaag ttacgggcag agatggagaa aaatggcaaa gtaatgggcg
     9301 tgcaggatca aatgattgct agtcacgctc ttgctgaaga gtgtatttta gtttctagtg
     9361 atcaggcatt taaaatggta cctgatctga aattggagaa ttggttacac taaactatag
     9421 taaggaaaaa caatgaaaca atcccttctt aaccgtttac tacgttacac ccaaattcac
     9481 acaacttcag atccgaaaag ccaaactgtg ccaagctcgc aacagcagtg ggatttgctt
     9541 catctgctga aaacggaagt agaggcgatg gggctaagcg agatttatct tgaccccaac
     9601 ggctatctgt tcgccagctt gcctgccaat attgacaaaa ccctgccggt gcttgggctg
     9661 attgcccacg ttgatacttc gcccgatttt aatggtgaaa acgtgaaacc acaggtgatt
     9721 gaggcttatc aaggcggcaa tattttgcta aacggcagtg gcgattatct ttcgccaacg
     9781 gatttcccga atttaaacaa gctgattggc gacaccttag tcaccactga cggcacctct
     9841 ttgcttggcg cagacgacaa atccggcatt gcgattattc tctcggctat cgagtattta
     9901 caagccaatc cgcatattcc gcacggcaag atccgcatcg gctttaccac cgatgaagag
     9961 atcggtcgag gcgcagatca ttttgatgta aacgcattcg gtgccgatgt cgcctttacc
    10021 tttgatggcg ggcctctggg cgaattgcaa tatgaaaatt tcaatgccga tgcagcgacc
    10081 gttacgttct tcgggcgtag cgttcacccc ggcacggcaa agggcaagat gatcaacgcc
    10141 ttagagcgag cttgcgagtt ccaacaccgt ctgcctcccc atttaacccc tgccaccagc
    10201 gaagggcgtg aaggctttat tatgttgcac ggcattgagg gtggaattga taaagcggaa
    10261 attcactata ttttacgtag ctttgagcgt gatgaattag ctgcattcgg caaaatgctg
    10321 aatgatacgc tggcagagat gcaacagatt tacggcgaac attgcggaaa agtcgagatt
    10381 gtcgagcaat atcgcaatat gcgtgaagtg ctggacgatt acggctactt ggttgaaatt
    10441 gccgaaaacg caatgcgtga acaaggcatt gagccgaatt tagaaccgat ccgtggcggt
    10501 actgatggct cacgcctttc atttatgggc ttgccttgcc cgaatttatt taccggcggc
    10561 gaaaatttcc acggacgatt tgagtttatt tcggttgata cgatggaaaa agccacaaaa
    10621 gttgtaattg atatttgtcg gaaatttgct gattatgatt tcaacaaata aggcggctgc
    10681 aagcggtcaa atttgatgaa aaatttgcaa aaagcgttat ttttcaccaa ttaaacgatt
    10741 ttttacagat ttcctacaaa tttatttgac attaaatctg aaatccatag aatatgcacc
    10801 tgttgagact ctacgaggtt cgtagcgttt ttaa
//
LOCUS       DANLXB010000089        10765 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLXB010000089 DANLXB010000000
VERSION     DANLXB010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10765
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..256
                     /locus_tag="PXD41_001509"
     CDS             <1..256
                     /locus_tag="PXD41_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6289032.1"
                     /translation="KAQRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSFQMEPS
                     SAGIMMTVYAWVVFLLSLPLMLLTANMERKRLLLMLFMGE"
     gene            253..954
                     /locus_tag="PXD41_001510"
     CDS             253..954
                     /locus_tag="PXD41_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6289033.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(1021..2754)
                     /locus_tag="PXD41_001511"
     CDS             complement(1021..2754)
                     /locus_tag="PXD41_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL6289034.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(2759..2980)
                     /locus_tag="PXD41_001512"
     CDS             complement(2759..2980)
                     /locus_tag="PXD41_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL6289035.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            3219..3791
                     /locus_tag="PXD41_001513"
     CDS             3219..3791
                     /locus_tag="PXD41_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL6289036.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            3822..5027
                     /locus_tag="PXD41_001514"
     CDS             3822..5027
                     /locus_tag="PXD41_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6289037.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            5041..8208
                     /locus_tag="PXD41_001515"
     CDS             5041..8208
                     /locus_tag="PXD41_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL6289038.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENDLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMEGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            8436..9899
                     /gene="guaB"
                     /locus_tag="PXD41_001516"
     CDS             8436..9899
                     /gene="guaB"
                     /locus_tag="PXD41_001516"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL6289039.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            10020..10691
                     /locus_tag="PXD41_001517"
     CDS             10020..10691
                     /locus_tag="PXD41_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL6289040.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
BASE COUNT         3131 a         2005 c         2444 g         3185 t
ORIGIN      
        1 aaaagctcaa cggagattat cgttccttag agtatttagt cttgcctttg cggcttttat
       61 agtaaacacc accgaattta ttcctattgc attgctttca gacattgcaa gcagtttcca
      121 aatggagcct tcatcggcag gcattatgat gacggtttat gcgtgggtgg tatttttatt
      181 atcgttaccg ttgatgttac tcacggcgaa tatggaaaga aaacggctgt tgctgatgtt
      241 atttatgggc gaatgatcgg gcaagcctta ggctggcggg caacctttgg cattattggg
      301 attatcgctt tgattgtgct aatgatgatt tggcggttgc tgccttattt accaagcaaa
      361 aatgcaggct cgataaaaag tttgcctttg ttatttaaac gcccgatgtt aatcggcatt
      421 tatttgctgg tggcattgat cgtttcagga cattttaccg cttacagcta tattgagccg
      481 tttatgatta aaatcagttc ggtgagtgtg gaaaacacca cctttatttt gctggttttt
      541 ggcttggcag gtgtggtggc aagtttttta tttggtcggt tatatggcaa agccccgaat
      601 aaatttatct taagcgggat cgccattatt atgtgcagcc agctttgttt actgtttttg
      661 agtgactcaa cagtggcaat gtttatggtc gcttttgtct ggggaattgg cattaccgga
      721 atgagcattg cgttgcaaat gaaggtgctt gaacttgccc ctgatgcgac tgatgtcgca
      781 actgcaattt tttccggcac ttataattta ggcattggcg gtggagcatt actggggagc
      841 atcgctattc agcaactggg attagccaat atcggatttg ccggtgggag tattgctttt
      901 gtagcaatgg tttggtttgt atttgttagc ttgaaatata gacagctcag atagtgacaa
      961 gcggtcatat tttgctgaaa ttttgcaaat tttcctgcaa aaatgaccgc ttgttgaaca
     1021 ttacttttca ataaattgat tgctttgttg aatcatttgt aagaacaacg ctaatggtgg
     1081 tcgagcatct ttctcgtgtt cgccattgct gttaaagtgc ttaaagttgc ctttacgatc
     1141 aatttgatat tgatcgccat tcggcataat cgccacattc catttgtgat tagaactgga
     1201 tacccataaa cgttggttct gggtgcttaa atccatacct tgtgcataat cattcagcgg
     1261 attttgcacg ccgaagaatt ggctcagtaa ggttggcata atatctaaat ggcttgaaag
     1321 gaaatggtac tctttgcttt cgccttgcca gtagaacatc atcggcactt gaatgtgttg
     1381 tttatcgaag ctattttctg ctccaacttc attactaata tcggcggtaa tgattaccag
     1441 cgtattcgcc aatagtgcat tttgggtcaa atgttgccag atttcagcga attgccaatc
     1501 taataatttt gcctgctctt gagcggtgtg ggcgaagggc attcttaagt ctaaatagct
     1561 aaagaacgga ttttccaatg agcgagagct gatccagttt ttccattgcc caatcgcccc
     1621 tacattactg tgcgccgtag gcaataaaat accagagaag atcgcctgat gataaatcgg
     1681 gtcggcaaaa ccattatgtg aaaacagccc taattgatag tccgattttc tagcgatttc
     1741 gataagcggt gacacggttt tatcggctaa aacggaatcc aaatatttac cgcttaaact
     1801 gtaaaataga cctaatgcac cggcagaggc tgaatcacca ctactgtaat gctgcataaa
     1861 gcggtggctt tgttggctga tttctgtcag cttaggcatt gtttcggcat ttattatctg
     1921 tttagataaa cctgataaat taatcagtaa aatattagtt gagggcgttt tggtcgcaat
     1981 caagggagat tttggataat tcagatagaa agtatctagt ctgccacttt cttcaatttc
     2041 ttgattaaat tctactcggt caataaaacc gtgtttttct aagaaattac gagccgtcat
     2101 cgggtaagaa agtgggtagt ttgctcgttg agcggtaatc gggcggtagg cattcatatc
     2161 tgcccacgca tagattaaat gagtagcggt aaagctgatc acgaaaaaga gagcgacata
     2221 tttgccccat ttttggcggc taaaactacg cagtttctgc cagcaccagc gagagtagag
     2281 catttctgcc agcaaaagga gtggcattgg tacaaacagc agttgccatt tacgggtcag
     2341 ttccccttct tccggattaa ctaacagatc ccatacaagc ggtgataaat gcagataaaa
     2401 ttgcttgaag acttcagtat ccaccaataa cacggtttgc ccgatggtgg ctaaaatcac
     2461 ggaaagccca cgataggtgc gatgattctt aacaataaaa ctgagcggaa acagaattaa
     2521 tagaaatcct gcaaagacca caaagctgaa atgcccgaac aggctgacaa agaaataaag
     2581 tttgcctaca agcgtgttcg gccagtctgc attaaatgcg taacgagagg aaatgagtag
     2641 tgccaacaca atattaaata gtgcaaacca atgcccccac gtgattttct gtgaggtttc
     2701 ttctcgatat tggcgagaat tggtcggcaa taaactgcgt aggcgtgcaa acatcatctt
     2761 atttggtttt tagtgattgt tttaatgcat cggcaaaggc atcagcgaga gcttctcttt
     2821 gtgccgggct ttgaatattt tcaattaaaa tgttagttat catattgcct aatgccatta
     2881 acgataaatc caccggtgct ttatgctttt ctatggtggc gatgaggtca gccaatagct
     2941 gctcaaattg tttggtgtgg tatttagatt tcgttgccat attgaaataa agatgatcct
     3001 ataattaggt acaaatagta gcacaaaaat aataataaag tagcgttaag cgttattgtt
     3061 tgagtgattt ttgcaaagtt ttagccaaaa atgaccgctt gttcaataaa tgaggaattt
     3121 tgcaactatt ttattttaat ttgataggtg ttttctgctt tcttttttca taaaaaaagc
     3181 tataatgaac ggctgttcat tataggtaag gagataaaat gtctaggcga agcgagccaa
     3241 aagaagagat ggtaaaccgt attttatcgg caaccgagtc gctgattgtg caagaaggtt
     3301 tgcaaaacct ttcaatgcgt agtattgcaa aagaagcagg gatcgcttcc ggtacattat
     3361 atctttactt taaaaccaaa gatgatttat tgcactcatt ggctgcccaa ttactcgaat
     3421 gttataacgg ttatatgcat tttgagttta agcctgaaat ggcgttattt gagcaatata
     3481 aagcgttggt caataaaaaa tggcagtttt taatcgagcg tttagatttg gtaaaacagt
     3541 ttcaagcggt gatagggatt gatgaattga ttcgggaaac catagctgat gaaacttcct
     3601 tttggaataa attaatttta gaagggaaaa agcaaaggat tattgctgat ctatctaatg
     3661 agttgcttta tggattaagc atcggcacat tggtggatat ccaatatctg caaaatctga
     3721 atcaagaaaa tcagtttgat ggatatttag acgagattat tttacgcact tggaaagcaa
     3781 tcacttttta agtttctttt tattagtttt atggagaatg tatgacaacg gaaacacaga
     3841 agctgggtaa aggcagaaag tttttaattg tactcacatt gttaatcgta ttgattgtgt
     3901 ttgctgcaat cgtagggtta caaaaaatcg gggcaatgaa aaaagccgaa gcagcggcaa
     3961 atatgccgga ggcggtgagc gaagttactg ctatgcaagt gacgacccaa gaatggacac
     4021 caaccatttc tgcggtcggt tatattcgcc caaatcaagg ggcaatgtta agtgctgaaa
     4081 cttcaggcgt ggttagccgt gttttggtca cttcaggaca gcgtgtgaaa aaaggtgatc
     4141 tgttagtaga atttgacagc agtgttgaaa ttgctaactt gagagcctct gaagcgcaat
     4201 taccgaatgc caaagcaaat ttagagcgtt accgtaatct gattgcctca aacagtgctt
     4261 ctaaagccga gtttgataat gctcaatcta cctacaacca attattagcc aatatcgagg
     4321 cattgcgtgc tacgattaaa cgccgtcaaa tttatgctcc gtttagtggt ttagcgggta
     4381 tcgtgaatgt gaatgttggg caatacatta caatgggtac ggaaattgtg cgtgtggaag
     4441 atcaatcttc aatgaaagta cgttttacct tgccgcaaac taatttagag caaatctcga
     4501 ttgggcaaaa agtgacagcc gtaattgatg cgttaccggc acaaaccttc ccagctaaaa
     4561 ttgtggctat tgatccggct gtggatcgtt taaccggctt aattaatgtg gaagcggtga
     4621 ttgaagaagg gcaggaaaaa ttgctttcag gtatgtttgc ccgcttaaat gttgctttac
     4681 caacagaaac cggacaaatc gtcgtaccac aaatttctat cgcttacact atgtatggtg
     4741 aaacggtata tgtgctgcaa ccattatctg atgaagataa agaaatggtg aacaaaatgg
     4801 cggtacaaaa cccaagttta gatgtaaaca aaatgtaccg tgcaaaacag atggaagtga
     4861 aaacggctga ccgcaaagga aactattcac aattatccaa aggcgtgaaa gcaggtgatc
     4921 tgattgtaac aggcggttta caacgtttaa gtaataatgc gttggttaaa gtttctgata
     4981 cagaagccgt aggcattacc acaccggcga aaaacagtaa actgtagtgg agtgagttaa
     5041 gtgaaattta ctgacatctt tattaaacgt cctgttttgg cagtttgtat cagcctattg
     5101 attacgatcc taggcttgca agcaatcgaa aaattgcagg tgcgtgaata tccggagatg
     5161 acggtctcga ttgtaaccgt gagtgttaac tattcaggtg cagatgcacg tttaatgcag
     5221 acactggtta cctcacagtt agaagaggct gttgctcaag cggataatat tgactatatg
     5281 acttcatcaa gctctccaag taccactacg gtaacggcaa aaatgaagtt aaataccgat
     5341 ccgaatgccg cactttccga tatttcggca aaagtgaatg cggtacgctc aaatttaccg
     5401 agcggtattg atgatccgtc aattagagtc tcaaccggtt caaatgatgc gttaatgtat
     5461 atccgatttg tctctgatga acttaataca tcacaagtta ccgattatat taaccgtgta
     5521 gtaaaaccac agttctttac ggtaaatggt gtttctagcg ttgatgtgta tggctctgtt
     5581 tttggcttac gcatctggct tgatccggat aaaatggcga gcaataacct atcaggggcg
     5641 gctgtattat cggcattaag tgccaataac ttgcaaaccg ctgcgggtaa ttctaacggt
     5701 tactatacgg tttatagaaa caaagtactt tctaccacgc cttctgtgac agagttagaa
     5761 gaggttacgg tttcaaccac caaagatgga aaaaccatca aattaaaaga tattgcgact
     5821 gttgagctgg ataaatacca agatgcagca agagcaacgg ttggcggtaa agatgcagtt
     5881 gtgcttgctg tttcggtagc cgcaacggca aactctttaa ccgtagcgaa agatatttat
     5941 ccgatgtttg agcaggtatt aaaaaatcta ccaagcacca ttcaaggaga tattgtttac
     6001 gataaaacca ttgcgattga tagttctatc aaagaagtaa ttaaaactat tggtgaggca
     6061 accgtcattg tattggtagt aattatcctg ttcttaggtt cattacgagc aatgattgta
     6121 ccggtgatta ccattccgat ttccttaatc ggggtattat tcttcctgca aatgtttggt
     6181 ttctcgatca acttgcttac tttgctggcg ttggtattag cgatcggctt ggtagtggac
     6241 gatgcgattg tcgtacttga aaacgtagaa cgtcacgtta aagaaggtaa aacgccattt
     6301 gatgcagcga ttatcggtac acgtgaaatt gctttaccgg ttatttcaat gactattact
     6361 ctgggtgcag tatattcacc aatggcatta atgaccgggg taacagggac actatttaaa
     6421 gagttcgctt taacgcttgc cggtgcggta tttatttcgg ggattgcggc attaaccctt
     6481 tcgccgatga tgtctagccg aatattaaaa gaacataaag aaggggaaga gtcagcattt
     6541 gcccgcgtgg tgcatagatc actagataaa atgaccagct gctataccaa tatgctaagc
     6601 ggtattatgg ctgttcgtgg tttcgtctta ttctttgcgg tgctgatctt cgccagttta
     6661 ccgatgttat ttggctcact ttccagtgaa gttgcaccga cagaagaccg tggctttgtg
     6721 gttggtattt ctaatggacc ttcaaacacc aatttagatt ataccgaagc agcgttagcc
     6781 caatttaatc aggaagtaac taaattacct gaagtatctt ccttaatgac agtttcaggc
     6841 tttaatggtg caaatagtgc attatcgatt attgcattaa aagattggaa tgatcgtagc
     6901 cgtgaacgtg ctgcgatttc taatgatgtg gctgcaatcg gtaaaaaagt ggtgggtatg
     6961 gacgtgaatg caattgcatt ccctgaaatt tcaaccggtg aaaatgatct accattctca
     7021 ttagtgatta ctaccgctga tagctatgaa aaattggcaa tcgttgcctc tgaattcttg
     7081 aaaaaagccc aaacttccgg tcagttcttc tttgcgaatt tagatttgaa atttgatacg
     7141 gtcacgatga atatgaaatt cgaccgtgaa aaaatgggtg cttatggcgt gacaatgcag
     7201 caggtgagtg gcacattagg ggcattctta tccggtgcga ttattactcg tgtcgatatt
     7261 gactctcgtg cttacccgat tgtgtcgcaa gcggtgcgta atgatcgttt aaatcctgaa
     7321 gatttaatga attactatgt cacgactgca acagggcaat ctatcccgtt aggttcattt
     7381 gtgacgatgg aattaaaaac atcaccatct tctttacctc gtatgagcca attaaactcg
     7441 gccaccattg gtggggtagt atctggctca atcggcgatg cggtaaattg ggcgaaagca
     7501 gaattagatc gcactttacc atcaggttat caatatgact tccgtggtga atctcgccag
     7561 ttcgttcaag aaggtaatgc gatggcaatg actttcgctc tagcagttat cattatctat
     7621 cttgtacttg caattcaatt tgaatcttgg cgtgacccat tagtaatttt ggtttctgtg
     7681 ccgttagctg tgagtggtgc attgttggta atgaacattc caaccgcaat ggaaggcttg
     7741 tttatgggga ttgcagcagg cactggctcg aaagatatga tggcattcgc caacggtatt
     7801 tggacggcag gttatacctt aaatatctat tcacaagtag gtctaattac ccttgtcggc
     7861 ttaattacta aacacggtat cttgatgtgt gaagtggcga aagaagagca gttactgcac
     7921 ggcaaatcac gctatgaagc tattttccac gcagccacga ttcgtttacg cccaattatg
     7981 atgacaacgg cagcaatgat tgcaggctta attccgcttc tgtttgcggt gggtgccggt
     8041 gcaatcgccc gcttcagtat gggtatggta atcgtagcag gcttggcaat cgggacattg
     8101 tttactctgt ttatcttgcc ggttatctac actttcttag ggcaagaaca caagccatta
     8161 cgtgaatttg acgaggaaaa atatttccca acgacaaaag aagcatagtt ttaaatagca
     8221 aaagagcgta gcgatacgct cttttttgtt ggcttacaag cggtcgtttt ttatttattg
     8281 tttgctaaaa aatcacaaaa tttaaccgct tgaaagtata ttttcagata gcgtaaacgt
     8341 ttccctattt acagaaacct agttcctctg tataatccgc tcgcaatttt ccagtacaga
     8401 ttttcaattt aatcattttt taaggaataa ttgcaatgct acgaattaaa caagaagccc
     8461 tcacttttga tgatgttctt ctcgtcccgg cacattctac tgtgcttcct aatactgctg
     8521 atctttctac tcaattaact aaaaccattc gtttaaacat tccgatgctt tctgctgcaa
     8581 tggataccgt tacagaaact aagcttgcga tctcccttgc tcaagaaggc ggcattggtt
     8641 ttatccataa aaatatgtcg attgaacgcc aggcagaccg tgtgcgtaaa gtgaaaaaat
     8701 ttgaaagtgg tattgtttct gagccagtga cgatttctcc tgatatgaca ttagcggaat
     8761 tggctgaatt ggtgaaaaag aacggttttg caggctatcc ggtgattgat gaaaaccaaa
     8821 atttagtggg aattattacc ggacgtgata cccgatttgt cacggattta agcaaaacag
     8881 tgcgtgaatt tatgacacca aaagaccgtt tagtgacggt aaaagaaaac gcaagccgtg
     8941 aagaaatttt ccacttaatg cacgaacacc gagtggagaa agtgctggta gtgaataatg
     9001 aatttcagtt aaaaggaatg attaccctaa aagactacca aaaagcggaa agcaaaccga
     9061 atgcctgtaa agatgagttt gggcgtttgc gtgtgggggc ggcagtggga gccggtccgg
     9121 gcaatgaaga acgaattgat gctttagtaa aagcgggtgt cgatgtgcta ttaatcgact
     9181 cttcgcacgg gcattctgaa ggtgtattac aacgtgtgcg tgaaacccgt gcaaaatacc
     9241 ctgatttacc gattgttgcc ggtaatattg ccactgcaga aggagcgatt gcgttagctg
     9301 atgcaggagc cagtgctgtg aaagtaggaa tcggcccggg ttcaatttgt accaccagaa
     9361 ttgtaacagg cgttggcgtg ccacaaatca cggcaatcgc agaagcggca gctgcgctta
     9421 aagaacgagg cattcctgtg attgctgatg gtggaattcg ttattcaggc gatatttcaa
     9481 aagctattgc cgccggtgca agttgcgtaa tggtcggttc gatgtttgcc ggcacagaag
     9541 aagccccggg tgaaattgag ctttatcaag gcagagcatt caaatcctac cgtggaatgg
     9601 gatcattagg tgcaatgagt aaaggctcgt cagatcgcta tttccaatct gataatgccg
     9661 ccgacaagct cgtaccggaa gggattgaag ggcgtatcgc ttacaaaggc tacttgaaag
     9721 aaattatcca ccaacaaatg ggcggcttac gctcctgtat gggattaacc ggctgtgcca
     9781 ctattgaaga actccgcacc aaagcagaat ttgtccgcat tagtggtgct ggtattaaag
     9841 aaagccacgt ccacgatgtg acaattacca aagaagcacc gaactaccga atgggttaat
     9901 agcctttctc actctctccc cttgtgggag agagaccgtt ttaaattacg ttcagtaatt
     9961 taaaacagag agagggaata agtggttaga ttttcttaaa attttacaaa agaggctata
    10021 tgctccaagc tatcattttt gatatggacg gcgtgattgt ggataccgaa tatctggaat
    10081 tttccttaca aaaacagttt attgaagaca tcaaagaaca cagccgcccg attactttag
    10141 aacaacaatc ggaagtggta ggcaaatgtt taaaagaaat tccggtgatt atcaaaaaac
    10201 taagcgaatc cagtttgccg attgaggaaa ttcgtgcacg ttactacgcc tttttccaag
    10261 atctgtttag caaagtggat tttaaaacca ttttcagagc cgatattcag caaattattc
    10321 aatttgccaa gcagaatcaa attaagcttg cggttgcctc ttcttccgcc ctttcgcata
    10381 ttgaaaatat tctcacggtt tgcggcatta aagacgaatt tgatttaatc gtcagcggtg
    10441 aacagtttga acacagcaag ccagacccaa ccatttaccg ctacacctgc gaaaaattag
    10501 gcgttgagcc acaaaatgca gtggcgattg aagactccta ctacggaatg ctcgccgcca
    10561 aaaccgcagg cttaacggtg attggttacg aagaaaaacg aatactgatt gaccaaagtt
    10621 tagcggatta tatgggcaaa gatatgaaag agattttgaa gattcttcaa aaatgtaata
    10681 ctccaagtta ataaacggtc gatttttata gaaattttgt caatgtttct acttcaagta
    10741 cttggaacag tctatcggct tgagt
//
LOCUS       DANLXB010000090        10534 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.091, whole genome shotgun sequence.
ACCESSION   DANLXB010000090 DANLXB010000000
VERSION     DANLXB010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10534
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            39..2606
                     /gene="clpB"
                     /locus_tag="PXD41_001518"
     CDS             39..2606
                     /gene="clpB"
                     /locus_tag="PXD41_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL6289041.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            2820..3962
                     /locus_tag="PXD41_001519"
     CDS             2820..3962
                     /locus_tag="PXD41_001519"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL6289042.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4019..5410)
                     /locus_tag="PXD41_001520"
     CDS             complement(4019..5410)
                     /locus_tag="PXD41_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL6289043.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(5570..6469)
                     /gene="cdd"
                     /locus_tag="PXD41_001521"
     CDS             complement(5570..6469)
                     /gene="cdd"
                     /locus_tag="PXD41_001521"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL6289044.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(6483..7385)
                     /locus_tag="PXD41_001522"
     CDS             complement(6483..7385)
                     /locus_tag="PXD41_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6289045.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(7382..7738)
                     /gene="folB"
                     /locus_tag="PXD41_001523"
     CDS             complement(7382..7738)
                     /gene="folB"
                     /locus_tag="PXD41_001523"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL6289046.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            7808..8413
                     /gene="plsY"
                     /locus_tag="PXD41_001524"
     CDS             7808..8413
                     /gene="plsY"
                     /locus_tag="PXD41_001524"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL6289047.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(8487..10394)
                     /gene="parE"
                     /locus_tag="PXD41_001525"
     CDS             complement(8487..10394)
                     /gene="parE"
                     /locus_tag="PXD41_001525"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL6289048.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
BASE COUNT         3272 a         2316 c         2110 g         2836 t
ORIGIN      
        1 aaatttacac tttctaaact cattgtaagg agaaagaaat gaattttgaa aaaatgacca
       61 caaaactgca agaagccttg gctgaatcac agtcgcttgc ggtaggaaaa gataatccgt
      121 acatcgaacc ggcacatttg ctctatgcgt tgttaaaaca agaaggtggc tcgattgctt
      181 ctttgtttac cacattaaat gttgatgtac cgactttaat tcgtgaatta caacaaattt
      241 tagaccgctt gccgaaagtt caaggcggta acacccaagt ttcacaacag ttggtcagac
      301 tgttaaatca atcagacaaa ctggcacaac aattcggcga cagctttatt tcatcagaac
      361 tatttgttct agctgcactt gatgacaatg gcgatttggg gaaactattt aaacaatttg
      421 gcttaaacaa ggaaaaacta acacaagcca tcagccaaat tcgaggagga gacacagtga
      481 ataatcaaaa tgcggaagat acccgccaag cactcaaaaa atatacgatt gatttaaccg
      541 aaagagccaa agccggtaaa ttagacccgg ttatcgggcg tgatgaagaa attcgccgtg
      601 cggtgcaagt cttacaacgc cgtaccaaaa acaaccctgt gttaattggt gaaccgggtg
      661 tggggaaaac ggcgattgta gaaggcttgg cacagcgtat tgtaaacggc gaagtgccgg
      721 aaggcttgaa aaataagcgt gtactttcgc tggatatggg agcattaatt gccggtgcga
      781 aatatcgtgg tgaatttgaa gagcgtttaa aagcggtttt aaacgacctg gcgaaagaag
      841 aagggcaagt tatcctcttt attgatgaaa ttcacacgat ggttggagca ggcaaaacag
      901 acggagcaat ggacgccggc aacttattaa aaccaagcct tgcccgtggt gaattgcact
      961 gtgtgggggc tacaaccctt gatgaatatc gccaatacat tgaaaaagac gcagcccttg
     1021 aacgccgttt ccaaaaagta ttggtggacg aaccaacggt tgaagatacg attgcgattt
     1081 tacgtggttt gaaagagcgt tatgaaatcc atcatcacgt tcaaattaca gaccctgcca
     1141 tcgtggcggc ggcaacgctt tcgcaccgtt atgtgtctga ccgtcaattg ccggataaag
     1201 cgattgactt gattgatgaa gccgcttcaa gcctgcgtat ggagattgat tctaaacctg
     1261 agccgttgga taaattagaa cgccgcatta tccaactcaa attggaacgc caagcgttac
     1321 aaaaagagga agatgaagcg agccgtcagc gtttagccaa attagacgaa gaaatggcag
     1381 cgaaagagcg tgaatattcc gagctggaag aaatctggaa agcggaaaaa tccgccttac
     1441 ttggtacaca gcatattaaa tcggagttgg aaaatgcccg aattgcgatg gatcaggctc
     1501 gccgtgaaaa cgatttcgag aagatgtcgg aattgcaata tggcgtgatt ccaaacttgg
     1561 aaaaacagtt acaagcggtc gaaaatggcg aaaaaaatgc agatgctcag ctcctccgta
     1621 ctaaagtcac cgaagaggaa attgcggaag tgctttcaaa agcaacgggc attcctgttg
     1681 caaaaatgat ggaaggcgag aaggaaaaac tccttcgtat ggaagaagta ttacacgctc
     1741 gggttatcgg gcaaaatgaa gccgttgatg cggtggcaaa tgcgattcgc cgtagccgtg
     1801 ccggactttc cgatccgaat aaaccgattg gttcattcct attcttagga ccgaccggcg
     1861 tgggtaaaac cgagttaagc aaaaccttag ctaatttctt gtttgacgat cctgatgcta
     1921 tggtgcgaat tgatatgtct gaatttatgg aaaaacacag cgtatcccgc ttagtgggcg
     1981 cacctccggg ctatgtcggc tacgaagaag gcggctattt gaccgaagcg gttcgccgcc
     2041 atccatattc ggtagtgtta cttgatgaag tggaaaaagc tcaccctgat gtgtttaaca
     2101 ttttattgca agtgttagat gacgggcgtt taaccgacgg gcaaggcaga acagtcgatt
     2161 tccgcaatac ggtagtgatt atgacctcaa acttaggctc gcatttaatt cgagaaaatg
     2221 cgtataaagg ctatgatgtg gttaaagaaa tggtgatgga agtcgtcgga cagcacttcc
     2281 gccctgaatt tatcaaccgt attgatgaaa cggtgatgtt ccactcactt ggtcaagagc
     2341 atatccgttc gattgcgaag attcagctac aacgcttaat ccaacgcttg gcagaacgag
     2401 gctatgaggt gacagtaacc gatgcagcat tagatcatat cggcaaggct ggtttcgatc
     2461 cgctgttcgg agcaagacca ctgaaacgtg cgattcaaca agagcttgaa aatccgcttg
     2521 ctcaacagat cttaagcggt aaattattac cgaataaagc cgttacggtg gattaccaaa
     2581 acgggcagat tgttgcaaca caataatgtc tccgatggtg cgagcgtcct cgctcgtacc
     2641 ttacaagcgg tggatttatc gtaaaaattt gcaaaaaatt gctcgaaaat aaccgcttgc
     2701 acagtaaaaa ttttcatatt gcccttcatt aattttcata agctaatgaa gggcttttta
     2761 ttactctttt tgctatcatt aacggcgttt ataaccaata caattacaag gagtaattta
     2821 tgagccaatt atttccggaa gcaacaatcc gcactcaagc cccgtatcgt aatgatattg
     2881 taggcagctt tctacgtacc gatgcgttaa aaaaagccag agaagatttc aatcagcaaa
     2941 aaatcacccg tgacgaattg cgtgaagtca cacgccaaga ggtcaaaaaa ttagttgagt
     3001 tgcaaaagca acacggtgta aaagcagtct ctgacggtga atttagccgg acttggtggc
     3061 atttagattt cttagctgaa cttgatggaa tggattggca agaaaccgaa gtctttaacg
     3121 tgaactttac cggtcataaa cccaaagggc aaacggtaaa aatcgtgggc gatattgatt
     3181 tctccgaaag ccaccctttt gtggacgctt atcgtctttt aaaagaagct gccggcgatt
     3241 acccaaccaa attcacgatt ccggcaccga caatgttaca tattatctgc tgtgtgcgtg
     3301 cggaagatta ccaaccgtta ccacaatatc aagacgaaca aaaactgtac gatgatattg
     3361 ctaatgctta tatcaaagca atgcacaaat tctacgatat ggggctacgt aacttacaat
     3421 tagacgacac cagttgggga caattctgtg ccgaagataa acggaaagag tttgcagcca
     3481 gaggatttaa tttaactgat ttagcggaaa aatatgtcgc attattaaac cgtattgttg
     3541 atgcaaaacc ggcggatatg tcaattacga tgcacatctg ccgtggtaac ttccgttctt
     3601 cttggttctc ggaaggcggt tatggaccgg ttgccgaagt attattcggt aaatgccgtg
     3661 ttgacggctt cttcttagaa tacgataccg aacgtgcagg cactttcgag ccactacgcc
     3721 acattaaaga tcaacaagtg gtactaggct taattacctc taaatttggc gatttagaag
     3781 ataaaaatgt gatcattgag cgtattaaag aagcggctca aattgtgcca atcaatcagc
     3841 tatgcttatc accacaatgc ggctttgcct ccaccgaaga aggcaatatt ttaaccgaag
     3901 ccgcacaatg ggcgaaacta aacttaatta aagaaattgc ggaagaagtt tggggtagct
     3961 aatcctctat aatacaaata gccgagtaaa tactcggcta ttttagtttg ttttaacatt
     4021 acaaccagaa gagataccca acagtcgcaa tcacaaagat agagataata tttagccaga
     4081 aaccaacttt aatcatctca ctttgtttaa tttgccctgt accaaataca atcgcattcg
     4141 gtggggtggc aaccggcaac ataaaggcgc aagatgctcc tagaccaata attaaggcta
     4201 atccgaccgg tggcatattt aatgcttgtg ctatagagat gaaaatcggc actaacaaag
     4261 ccgcactggc tgtgttagag gtaacctcag ttaggaaaat aataaatgct gccacaatta
     4321 aaccaattag gtaaaaatgc cccccttcaa ttagtgagac gaccccatca gccataattt
     4381 tgctcgcacc agtttgtcct aatacagcac ttaacgtcaa accaccacca aataggaata
     4441 atacccccca ctcggtgttt tcttgaatct gttgccaatt tgcgacacga gtaatgcaaa
     4501 taagtgctgc ggcaatcaat gcaagaatgg tgtcaaagct cgcaattttg ccattaattc
     4561 ccagaaatgc agaaataata gggttaattt tatcaccaaa aatccaacca agcgcaataa
     4621 agacgaaaat agccaaggtg ataatacgag aacgatttaa ttcaattttc tcaaatgatc
     4681 gatcaaaact aactgaaaaa tttggtttaa atacgatata tagtgttgca atcattaatg
     4741 ggaataaaat tagcataatt ggcaaaccat attttaacca atcagcaaaa gtcagattca
     4801 attgagaagc aacaatcgca ttcggtgggc ttcccactaa agtacccatt ccaccaatac
     4861 tggcactata agcaattcct aataacacga aaagataagt attatggttt tgtttctgat
     4921 caagtttact taaaatcccc attgccaaag gtaacatcat tgcagctgta gctgtattac
     4981 tcatccacat tgacaaaaac gctgttaccg caaataaata aataactgca atcgataatt
     5041 tacctttagc taatgccata attttattgg caatcatacg atctagctgc tgaatgtgta
     5101 atgctgtcgc taaggcaaag cctccaaaaa ataagaaaat cgttggatca gcaaaagcaa
     5161 caagagcttc ttttgattta accagcccca gtgctacagc caaaatcgga attaataatg
     5221 ccgtaaccgt aacgtgtaat gcttctgtta gccataagac ggcaatgaaa attaacaatg
     5281 ccaacccctt attggcttca ggggtaaaag gcaaggtatt taacaaaata ataaataaaa
     5341 tagcatctgc aacaaaaatc aagctattgc gtgtattttt actcggttca ataagaggag
     5401 tattttccat aaaaacctca caaaatatag ataatcagtg gtatcactat atataaaaaa
     5461 acgatatagg caaatataat tgttgcaaaa gtgtgaagct catcaaaaaa tttaacacta
     5521 aaaaataaat tgcttaaaga tacagcacct ttgcaaaaat aaatcaaaat tacaccgctt
     5581 gtagcgaaag gtattcaatc tctaacccaa atagtgattt tgccaatgct tgagtcattg
     5641 cataactact gagagagcct ttcgcctcag ccagcacaac tcgagtaacg ggaatatcgg
     5701 caagccctaa aaataatcga tagttcaacg cgctttgcaa cggtaaaaaa gtaggattaa
     5761 aagctgcatt ctcagtatat ttaccacaaa caatacgctc acctacttgc agtgcaaccc
     5821 cactaaatgc gttgctgtaa ggggcataag cattattggc agcaaaaatt gccgcttgtt
     5881 gtaaatgatc gcccttaacc tcaaattgtt gcggttgttc atcaaataag actttctcaa
     5941 tccctaaatc tttcggtcca aaactatccg gcaaatagct atggagcaaa ttattttggc
     6001 tatgcggtaa atgtactttt aagcttgccg cactgtttaa ttcattcata aattggcggc
     6061 aatgcccaca aggggtatag ttcacaacca catctgttat caaagtttcc cctgctaaaa
     6121 atgcgtgcga gattgcactt tgctctgcgt gaacggattg ttgcatacat tccccggaaa
     6181 actcttggtt tgccccaaaa tagaaatctc cgtttttgcc aatcgcaacc gcccctacat
     6241 taaaatcgga aactggtgta accgcataac aggcagcaat ggcaatgcaa tataaagcca
     6301 actcaacacg agagcgttta aatttttcac agagttcatc aaccacttcg taagagagct
     6361 gcccgtgaaa atcttgcttg ataagttgct caataatagc ttgtgtaact tcacagtttt
     6421 tcgctgcttt taattgttca aaacgctctg taatgtctgt tcgaaacata ctgtacctcc
     6481 gtttaatgtt ttttatagct gcaaatcagt atccctgccg taatcagtat ggcactaata
     6541 atatggtaag tatgaactga ttcatttaat aaaataatac tgaacattgc tgcaaagagc
     6601 ggcgtaaaat tagtcattac cgctccttta gcagaaccga ctattgcaat gccgaaattc
     6661 caaaacgcat aagagagaat agaagggccg ataaccaaat agcctatccc actccattgt
     6721 aaagcggtca aatttgctaa attttttgca gattctgcta catattcata gataaaaaat
     6781 ggcgttaacg ttagaactgc cagccccact aatacggtca aaaacaccgt attgcttata
     6841 ccttgtggac gtagccgaat cacacaacaa taaaccgccc agcttatagt agaagcaatc
     6901 gcccataaat caccttgatt aattgccaag ctgaataagc gagttagctt cccttgcatc
     6961 aatagccaca gcactcccag caaactgatt attgccccac ttagaataat cgggctgatt
     7021 ttctccttaa aaacgagccg atttaaaaat agcaccaata caggcgaaat agctaaatag
     7081 agactcgcat tcaatgctgt tgtcgttttt aaaccttcat ataaggtagc cgggaataaa
     7141 attaccccaa gcagacctaa tacccacatc acacctaaac gaggttttaa taagtgcatt
     7201 acccgccaag ttgggcgaaa aaagagcaaa actaaaatta aaaaagccgg caaccaacgc
     7261 aaataggtta aggtaatagg ctgaactgcc ccacttaaca ctttgcctaa tacaaaattc
     7321 ccaccccaaa aaagagtagc aacgattaaa ctgaaatacc ccaatttcag tgatgatgag
     7381 atcattgatg acctcgttct acaatcacac ctacactgct tgcttgggca accgctttcg
     7441 gcttatgcag ttcaatccga atccaagaaa gttgatactc tttttgtaat agttccgcca
     7501 gttgataggc aacagtttca actaatttga aaggttgaga ttcaacaaaa tccagcactt
     7561 tttgcgatac ttccgcataa ttcaagcaat attgtacatc atcggtttct gccgctttgg
     7621 aaaaatccca cgccatatca atgttaaaaa ccaagcgttg cttaatcgta tgctcccaat
     7681 tgtaagcccc aatggaagca aaagcggtta gttctcgaat aaaaacctta tcactcattt
     7741 ttcgtcctgt tttattttct gaatttctgt aaaatatagc acaagataaa tttaatcagg
     7801 aaaatttatg aatttaattc cctatttatt gatcttaacc gcctatttgc tcggctcgat
     7861 ttccagtgcg gtcatttttt gtaagctggc aggcttgcct gacccaagag aagtcggctc
     7921 acacaatgcc ggtgcaacga acgtactacg aattggcggt aaaagtgccg cattaggtgt
     7981 gcttttattc gatattttaa aaggcacatt accggtggcg atggggattt attttgaact
     8041 ctctccctca caactcggtt tcatcgcctt agcggtttgt cttgggcata ttttcccgat
     8101 tttcttccaa ttccgtggcg gaaaaggcgt tgccaccgca tttggtgcaa tctccgcatt
     8161 aagctttatt gttgcaggcg gtgctatcgg cacttggcta ctggtgtttt taatctccgg
     8221 ctattcttct ttaagtgccg tcttcactgc cttggtcgta ccgttttaca tttggtggtt
     8281 cgagccacaa tttactttcc ccgtcgcctt agtttgttgc ctattggttt accgccatca
     8341 cgataatatt caacgcttat ggcgtgggca ggaagacaaa ctgtgggata aattcaagaa
     8401 aaatagagca taaaaatagg catagtgaac cgttcgctat gcctatttgc aaattattgc
     8461 ggaaaaatca ccgcttgtct tctcgactaa accgctaaat ctgcttcatc tcctcgattt
     8521 tgtagccatt gtttacgatc ttccgctcgt tttttaccca atagcatatc cataatttca
     8581 aaggtattca attcgccctc ttctaccgtg tcatcaaagg ttaattgtac taagcggcga
     8641 gtgcttggct ccatcgtagt ttcacgcaac tggctcgggt tcatttcgcc taagccttta
     8701 aagcgttgca catttggctt tccttttttc ttggcaaggc gagctaaaat cgcctctttt
     8761 tccgcctcat ctaaggcata atgcacctca tctttgccga tatcaatgcg ataaagtggt
     8821 ggcattgcca cataaacgtg tccgttttgc accaatttcg ggaaatgacg aaggaataac
     8881 gcacacagca aggtggcaat atgcaaaccg tctgaatccg catcggcaag aatacaaact
     8941 ttgccataac gcaactcttc taaattatcg ctatcagggt caattcccaa ggctaccgca
     9001 atatcgtgta cttcttgtga agccaatact tggtctgatg aaacctccca agtgtttaaa
     9061 atcttaccac gcagtggcaa aatggcttga tactctttat ctcgagcttg ttttgccgaa
     9121 ccgccggcag aatcaccttc taccaagaaa agttcggtac ggctgagatc ttgagctgta
     9181 caatccgcca gtttgcccgg taaagccgga ccactcacca atttcttacg caccactttt
     9241 ttcgccgcac gcatacggct ctgggcggaa ctaattgcca tttcagcaat taatttacct
     9301 gtctgcacat tttggttaag ccataaacta aaggcatctt tcaaggtgct atccacatag
     9361 cttgaggctt gacgggaaga caaacgctct ttggtctgcc ctgcaaattg tggctcttga
     9421 attttcagag aaagcacata agcacaacgg ttccacacat catcagcggt taattttacc
     9481 cctttcggca ataaattatg gatttcgcaa aactccacca tcgcctttaa taaaccgtta
     9541 cgcaagccat taacgtgcgt gccgccttgt gcggtcggaa tcaggttcac atagctttcc
     9601 gctactaact cgcccccttc cggcaaccaa gttaatgccc agcttaccgc ctctgtttca
     9661 gcagtaacat caccaataaa cggtggattc ggcacggttt cataaccgtt taatgcctcg
     9721 ctcaaataat cagataagcc gtcttcgtaa taccaacttt cttcggtatt gttgatttta
     9781 tcaataaaat tgatggtgag tttcgggcaa agcaccgctt tggctcgtaa caaatggcgt
     9841 aaacgactca ccgaaaaacg agggctatca aaatattttg ggttcgggta aaaacgcact
     9901 gtcgtgccgg tctgtttttt cgggcaagta ccaattaccg tcagatcttc cacttttacc
     9961 ccgttggcaa aggcaatcga atagacttct ccgccacgtt taatctgaat ttcaacccgt
    10021 tcggacaggg catttaccac cgaaatcccc accccgtgca aaccaccgga aaacgtatag
    10081 tttttattgg aaaatttacc gccggcgtgc aatttcgtta agataagctc cacccctgaa
    10141 attttctcgg tggaatgaat atcgaccggc attccccgcc cgttatccac cacttccaac
    10201 gaattatcag catgaagaat cacatcaatt ttatctgcaa agccggacaa cgcctcatcg
    10261 acactattat caatcacctc ctgccccaaa tggtttggac gtgtggtatc cgtgtacatt
    10321 cccgggcgaa gctgcaccgg ctcgaggtct ttcagaacgg taatttcatc cgccccatag
    10381 cgtttttcag acattatgct ttctcttagg cttaaaataa aataaggctg aattttaagg
    10441 aatattcagc tattttgcaa aattttggtg aaaaatgacc tgttgttatg caataaaaac
    10501 tatttttgcg atctacatcg aaaaaatgag tttt
//
LOCUS       DANLXB010000091        10443 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLXB010000091 DANLXB010000000
VERSION     DANLXB010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10443
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..287)
                     /locus_tag="PXD41_001526"
     CDS             complement(<1..287)
                     /locus_tag="PXD41_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289049.1"
                     /translation="MKNNFGYWLGRKIRAFKEWNHPTFLKYTYIILFLLITYQLRLWL
                     YAVFGAVISLIGIVLLADFMHENNAITQRRNILNELKEIKKLQENDCIKEN"
     gene            complement(300..794)
                     /locus_tag="PXD41_001527"
     CDS             complement(300..794)
                     /locus_tag="PXD41_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6289050.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(794..1066)
                     /locus_tag="PXD41_001528"
     CDS             complement(794..1066)
                     /locus_tag="PXD41_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL6289051.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1225..1653)
                     /locus_tag="PXD41_001529"
     CDS             complement(1225..1653)
                     /locus_tag="PXD41_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289052.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1674..3680)
                     /locus_tag="PXD41_001530"
     CDS             complement(1674..3680)
                     /locus_tag="PXD41_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6289053.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3695..4636)
                     /locus_tag="PXD41_001531"
     CDS             complement(3695..4636)
                     /locus_tag="PXD41_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL6289054.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4633..5076)
                     /locus_tag="PXD41_001532"
     CDS             complement(4633..5076)
                     /locus_tag="PXD41_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL6289055.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5451..5804
                     /locus_tag="PXD41_001533"
     CDS             5451..5804
                     /locus_tag="PXD41_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289056.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5876..6121
                     /locus_tag="PXD41_001534"
     CDS             5876..6121
                     /locus_tag="PXD41_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6289057.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6130..6372
                     /locus_tag="PXD41_001535"
     CDS             6130..6372
                     /locus_tag="PXD41_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289058.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6636..7478
                     /locus_tag="PXD41_001536"
     CDS             6636..7478
                     /locus_tag="PXD41_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289059.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7593..8006
                     /locus_tag="PXD41_001537"
     CDS             7593..8006
                     /locus_tag="PXD41_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6289060.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            8020..8175
                     /locus_tag="PXD41_001538"
     CDS             8020..8175
                     /locus_tag="PXD41_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289061.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8255..9238
                     /locus_tag="PXD41_001539"
     CDS             8255..9238
                     /locus_tag="PXD41_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6289062.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
     gene            10043..>10443
                     /locus_tag="PXD41_001540"
     CDS             10043..>10443
                     /locus_tag="PXD41_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6289063.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFSIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQR"
BASE COUNT         3057 a         2107 c         2022 g         3257 t
ORIGIN      
        1 aaattttctt taatacagtc gttttcttgt aattttttga tttctttaag ttcattaagt
       61 atattacgtc tttgtgttat tgcgttattc tcatgcataa aatcagctaa cagaacaata
      121 ccaattaagg atataactgc tccgaataca gcatataacc atagccttag ctgataagtt
      181 attaggagaa ataatataat atatgtatat ttgagaaaag tgggatgatt ccattcttta
      241 aaagctcgaa ttttcctgcc taaccaataa ccaaaattat ttttcataat cactctccat
      301 taagataatc tcaccctatc tagtggaaaa aataatttcc tagcctcatt ttcaaagtca
      361 ataaatccaa atttacgata aaaattgacc gcactttcat cttttgcctc aacaattaat
      421 gcgtaagctg ctatatctgc acgaagtacc cttttaagtg cattacctaa tagagcttgc
      481 cctaacccta atccctttac acgcttatct actgctaatc gaccaagtag gacggcaggt
      541 accgtaggat atcttggtaa tttcctctgt aatgtaattg gtaaatcaga taatgaaaga
      601 cttgttgaag ccagtgtgta atatcctact actgtctgtt cagaattaac agctaaaaaa
      661 caagaagtaa tacgtctttt aatatcttgt gaaacctgag ttttgagata ttgatttaat
      721 aattcagatt cactatcaaa acaatctcgt ttaaattcct tgctaaatga ctctattttc
      781 aatcccgaaa gcattattcc cccagaatct gtgagcttaa tgccaaggct ttttgcattg
      841 ccaaattagg ttcaggagga tcaatcaatg ctttagcaaa aagttcttgg tcattcacag
      901 ataatcgaat aatatcattt tgctcaactg tttttcttgc tgcagatagt gcagctccaa
      961 caacaaaatc actaagacta cgcccttcaa gagaagcggc tcgttttaac agcatatgaa
     1021 cttcttggct cattctagct tcaaatcgtg cggttgcagt tgccatatat tttctccttg
     1081 aattatttag ttttaattgt acgtatttat accgtacaaa tcaagcatga caataaaaaa
     1141 atcccttaga ttttcaaacc taagggattt acctaccgat ctttgtgttt tttaacgtgg
     1201 gctggcccta gtgccataca ggcattataa agtattcatc aaatgaacat caaacttata
     1261 atggcttttt ttacgagtat cacaatcaac agagccgata cttggttgtt ctttactttg
     1321 gctaatcgtt gctcccggct caataaattc ttttgcattg ccatttggct gaacaaagcc
     1381 gaccaaatac ttcaatccat cattttccag ctctaatgca tacgttgtaa aacctgaacc
     1441 tctggcgata attgagccgt cattagtgac tgccttttta atcggatttt tgaaggttgt
     1501 tttgtcatac gaatattcgt aatcatttcc tacccgttta acagtaagcg gttttccctc
     1561 cgtgctggta caggaaaata ttacgttttt atctgctgca aatactgggg tcgtgcagag
     1621 tgtaagagca gtaattacta ataatttacg cataaatgta actccttata aggttaattt
     1681 ttaccaagaa tataatcagc ttcctgattc cggcggcgtg cattgatacc gttattatca
     1741 acctggcgat ttctgacagc agttgccaaa gcagtcatat caccagtttg agctgatcgt
     1801 ctagctgcgt caagcacact ttttgttttc gctagtgagc cgtaattata tgcataagac
     1861 accaaaacag cctgagcgtt cgccggtaat gcattccaat gtgaatcacc taactcttgt
     1921 ctcacattgt tcgcaaagat agcagttctg cgagctaaat cacgttcagc atcttctttg
     1981 gtaatcacag tatccttggt cactttaact acggtaccgt ctgcccgtgt aatcgtatcg
     2041 gaaccatatc ctacacgatg ggcattcaca tcccattgag ccttggagat aaagccttca
     2101 aaattacgca gtaaccctgt tgcctgatcc atcgttgaac cgctgatttg tgcaagtgat
     2161 gggaaatttc cgcctacacc tgaaccacct ctatttggta gagtcgggat gagagctgct
     2221 acattcggaa tatttgggat actcaatgca atatttctac gagagaggtt aatattagag
     2281 cctgtctcta aatcagttaa tgcaacatta ccgttttcaa gtccttgaac acgcttatcc
     2341 agactatctt gggataaact atgagcacca gcaagagctt cccgttcgga tttactttgc
     2401 agaatcaccg aagccgtatt gccggtgatc attttttgca tatccatttc cagttttact
     2461 tgggaaattt cacggtcaat aatattgagt actctttcca gttctacttg agcatccgca
     2521 ttttgagcaa cattcggctc tcgcatacca gctaggattg ctcggcgagc cagtagcatt
     2581 ttttccatta ctttactggt cgcaatttca gcggataaac gttggctgag aagttcaaca
     2641 tctggatcat cacggaggct ttcaatcaag ccacgagtga caggtacact acttgagctt
     2701 aattcagcta atagctcgga tttcggcaca tccatattca gtacattttc taatttaaca
     2761 attgtacgaa tatgttcttc ttcaatttcc ggacttaaac caacaccggc tttcgaactg
     2821 gttttagtac cacaatcctc cttacaggtt gaaattgatt gctcaccaat aatcttagtt
     2881 aagaagtcgg cagcagcttg aggtgtatcc caagtctgac aaagattacc ttcacaattt
     2941 gaaaccgggc tgctatctaa gacattccgc ttattgagta aattaaatcc gcctttcgct
     3001 acatcaccaa cgacattaat tggatcttgg ttttgcccac ctttacgttg cccaccaacc
     3061 caaactctcc catctttccc ttttttatct tctaggtctt tttgggcttg cttcgcatca
     3121 ggttgtgtcg aggtaatttg cttatagctc tctaaatctg ctgcttgccc ccattttcct
     3181 cctagtgtgt gatctgccag aactttagac atttcctcac aggaagtttt tagacggttg
     3241 aaatccagct taccttggta cataccattt gtcagcaaat cgtagagttg agggttggcc
     3301 cgttgcaata tcattgcagg catactggca accgcacctt tagctgaatc aatgacattc
     3361 cccattaaat ctttaaagcc atctttaagg ccgtttaaat catttttaat agttgtttta
     3421 atgtcaaaat tgccacaggt taaattcgct ttccaaccga tgcctaaatc aacgactttg
     3481 gtattaccac gactaggtgg agccatataa cctgttcctc cgccgatttg gtaaaagaca
     3541 cgatctgaaa taatcgaatc cgacttacta aattccagtt tatcagtgat tgagtcagca
     3601 aaagagatag aggaagtact ggaaaaaagt actgttatta ctaatagatg tgttttcttg
     3661 aatttaaatt gtgatttcat tgcaagacct cgttttagtg tgaccaatca atactgtaaa
     3721 ggaatgtttg ccctcggcgt ttacaacaac tataaggtcg ccatagtgcc caagcataat
     3781 caccttgatt tgaaatctga gaggaatagg tgtctgtttg ccccccattt ggaaaaacag
     3841 agcaggtatt tgacatttga ggataaagca tttgccattt atgtgttctg gcttgtcctt
     3901 cttcgacagg tcctggtggc cattctccaa caccaccttt tttcgctgcc gggaaataaa
     3961 tatgtggttg agcagttcgg gtcacgatgt ctgcaactct ctgcacaatg gttgcagagg
     4021 ctttataatc gtgagcttgt gttacccaac cggaacgtgg gtaaatattt ccccagctat
     4081 cgcctacacg gccaacttcc cgcattcccg gaatcagagc ttccggataa aacatttccg
     4141 gcatattttc acgccaagca aagaaatcta atccacttag aaaatagggt ataaatggtg
     4201 tggtttgact tttacaatag tagcctgtac ttcctaataa ctgaccaatt gctccttggg
     4261 gatgcccgaa agcatctgca tttttgaagg ttagttgaga gtattgacgt tgcggagaac
     4321 gatattctcc gccttttacg ccaggattga gagattgtaa ttctgtccac ggagtttgcc
     4381 catcctggtt ataagatgaa acgaccattt ccggtaaata atgcttaatt ttggttgatg
     4441 tacgaacctt gcatccaaag taggtgcaaa ataaccagaa gcacgttccg acgactttat
     4501 agtctaaaca gcttgttgag gcacttgatg cagcaatcga cgccgtattc aatgatgctt
     4561 ttacctgttg aggatataag gttgttggta ctgctaaact tacagagaga agtaccgaaa
     4621 aaaacgctct tttcattttg attcaccgtg ttgttgaacc catttatgcc attcatctag
     4681 tgctttttgt atatcagtca taccataaat cacgctcgga gaggattgca gattattaaa
     4741 aaacaccgca ggcacttttt taattccatt ttgccatcca ctgatcaccc cttgataagc
     4801 atcttttaat tgctcttctt gggctttcca atctgctgaa ttaaagaatg ctcgtatttc
     4861 tcgttcggca atctcggggg atttactgag atttcgactg atttcctctt caaaattctc
     4921 tacttgatca agataataaa cttgggaggc aagttgtgaa ttttgaatgg ggtacatctt
     4981 tgttgtatag acaatgatat tcggctgtgc ttgtgccact acagaaaaca ctactgttac
     5041 tatgctgaaa tatcctagaa atctacttgc tttcatcact ctctttccga ataaataagc
     5101 agaaaattag cgagattttt acatagagga taggaaaaac tcttttcaaa aaagagatat
     5161 ttttttgagc aaaaaatggt tgattttata aatggatttc gtatgatatg gaatattaag
     5221 atgctgtgga aacagccctt aaaagtcgca taactcttga gaagcggcgg ctatccatcg
     5281 aggtagttga gttatttacc caaaatgtct cccagcattc tgaaagggaa cgctgcaaat
     5341 ttgcaggaat gccacctaaa cacctacctt ccgagggata tttcaattcc cttggaattg
     5401 cgatctcctg aggaatttta tttatttaac tttttatagg agaactcgct atgagtcaac
     5461 aaaccgcagg atgggatgtg atcccatttg aatcgtcaaa aaccgcaaaa ccttctcttt
     5521 tttggaaact tggcaataag ctcggtaata ttttcgtttc ggcgaaacat aaagctaaaa
     5581 gcaaatatgt cgaggtaacc aaaggcatca atcaacgaat tgctgaagaa gatgaaatgc
     5641 gagccttaga attgcaaatg tgcttagatg agcaagcagc tgaatatgag caggaaattt
     5701 ctcgcattaa gcgtaagatg tttttcaggg ctttattcgt tgcgattatt gcctttttat
     5761 gtggtatggc taccgttttt ggtactcagc tctctttaat ctaatttaac tcacccatcg
     5821 gggaaatgct atttcccttg tggtaataca tttcccctta attttggaga aatgtatgtc
     5881 agttcatatc aaactctcct gtgttggaga tattttgcca atcaaactca atgaatggac
     5941 accggaacat cgagccttac atcacgaaat tagccataaa gctctcgaag cctggcaaaa
     6001 tcgagataaa ggcactcaaa gcgtgcgatt tatgcaacaa atgccagccc gacaaggact
     6061 gcatttccgc tttctgagtg tatcggagca agacggcaag ctcattgtca gtcgttcata
     6121 gttggttcaa tgtttggtaa gcttttttac aaaatgaatc ccaaagtact agctaaaatc
     6181 ggagaagatt ttagaaaagc tggttatctt atgggagctg gttttgtcgg aatggtaatt
     6241 tccaatgatc agatttccac atcggaagga tttgttcttt ttttgtgggg attgtatatt
     6301 tggattatcg ggcatatcgc actacatcat tctgagaaaa tacttaattc aaagcaagga
     6361 gaaccgaaat gagtccgtac tttttaggtg ctgctattgg aacagcgtta ttggcaacaa
     6421 tttttattgt tctagtaact tgggcaaatc gagatatttt gtttacaaaa tcagataagc
     6481 cacagtctaa atagcaaaac tccattctaa cccatagggg aacaagttcc ccgaggagct
     6541 tgttctccgt tttaccttcc ttttacccta tcgggaaata ctttcccgaa ttgggcttaa
     6601 gtgtttccca ttatttttta ttttggagaa acattatgtc agattcagta ttaaacactt
     6661 attttaaaca cgctcttgtc aaagctggtt ttccggatac cttagatatg gagtattcac
     6721 tcagccattg tcaaggagat ggagtcgcat tttatggtcg gcttggtaca gatgatctaa
     6781 tccagctttt caatcatctc aatccacaga aacgtaaaca gaaaatgttt gctaatttgc
     6841 taacgcacat tgaatcttgg gaaacccacg atgatattgg ttttgaaatt atacgaaatc
     6901 gctttgggta tcgttactcg cattggaata cgatggagct ttatgctaaa actgcagatc
     6961 agttagtgtt tttcaatgat agtgatgctc gaagaaactg gtattttcct acttcaaaag
     7021 tggataaata caaagcattg tgggacggat ttatcgaaga tttggagcag tacatcaaag
     7081 atatttcccg tgaaatggaa tcggtcggtt atcaaattat tgaagcctcg ccgtatcaaa
     7141 cggaaaccgt tttcaaattt aatacggaaa aatatctagt agaactgcaa cgtaaacctt
     7201 ctgagtttta ttcagagctt gttgattggg catttggtga tatgtgtgat tttgaagcag
     7261 ctatagagca gatttgtcaa gggcaactct gttatgctga ttttgaagca actgttaccg
     7321 ataagaaaag tgaaattcag ttaggtcttg ctcgcttgag tggaataagt tactcgccga
     7381 atgaccgttc gtttagtggt tatcgacaag agcttattgg tgaggcgatt gcctctgctc
     7441 gccataatgc agcacgtttt gcctacttgc acgcctaatt tgcagatttt tactttaatt
     7501 tgaccgcttg tagtggttaa ttttcacccc gtggggaaat attttcccta ttgggcaaaa
     7561 tgtttctcca ctttttaatt tggagaaatg ttatgaaaaa tgaacacaat ttagagcaac
     7621 ttaaatatat ttgggataac cgcaaccttg aaaataaagt ctatcaatat ctgtttcaca
     7681 tctgcattga gccgatgaaa aaaggagatt ggaatcgtta tacgatttgg cttaattttc
     7741 acggtaactt aatcaacgtg tcagacgttg tatatcgagt tgtggaatct caaaagctca
     7801 aagatgacat caaaatttgg tatgacaagc aatactattg ccgtccaacc aaagttgaaa
     7861 caacaggttt tatttccatt tttctgcacc tgttttatga gggcatagct cgtattttgc
     7921 tggaacaggg aatgattact gaaactgaag cagccgagaa aagttacaac ttcagagctg
     7981 caaattgttt tcaacgtttg ctttaatgga ggtgagataa tggaacctcg cactgttaaa
     8041 gttatttacg atgatggcga ttatttcttt accctaatca atgccgatga acagactatt
     8101 cgtaattact acgctatagg cagttcaatc ggttttgata acacaaggaa aattgtcgct
     8161 gttgaaattt tataaactac ccatcgggga aacgacttcc ccatagggcg atagtgtttc
     8221 cccatttttc tacccgaact ttggagaaac acttatgaac cctcaatcaa acacacagcc
     8281 taaatttgat ttatatcaag aagtgaccga taaaatcatc gccgctttag agcaaggaac
     8341 ggctccttgg cttaaacctt gggatagcgt tattccttat ggtggtatgc cgtgtaatgc
     8401 catatccgga agattgtatt ccggaatcaa tgttttgtta ctttggttgt ctgccgcaga
     8461 acacggctat atccaacgca agtggatcac tgcaaaagca gctattgaag ccggtggaca
     8521 cgttcggaaa ggtgaaaaag caacccttgc ggtcagctat cgcccgtatg atcgagaaaa
     8581 aaccgatgat gatggcaacc ttgtcctcga tgacgatggt aacccggtaa tcgaacatct
     8641 cgcttcgatt aaaaagcact gcctattcaa tattgaacag tgcgaaaaac tgccacagga
     8701 ctggtatgaa acggttgaaa ccccagaaca gctgactgac gaaaatcagt atgctatttt
     8761 tgaggagatt cgtttgatgt tgaaaggtat ggatttgcaa gtgatggtaa aaccaagcaa
     8821 tcaagcttac taccacccac gcaatgacca tatcgtgatg ccggaaatga agcagtttca
     8881 ttcaccacaa aaattccata gcgtgctgct acatgaaatg actcacgcaa cagggcatca
     8941 atctcgcctt gctcgtgatg gtattgtttc cggaaaagct cgctttggca ataaagttta
     9001 tgcttttgaa gaattggtcg ctgaaatggg ctgtgcattc ttgtgttctc acctaggctt
     9061 tgctgacgtg ccacaaaatg ccagctacat tgaaagttgg atcaaggtgt taagagagga
     9121 taaacgggca attttcaggg cttcagggaa agctcgggaa gcctgtcaat atatgctgga
     9181 tgccttaaac atcgcacagc tggctgataa atacgaagta tttgaagaag ccgcttaata
     9241 aatttgccga aaggcatttc ccgtggggag atactctccc ttcggggcat tgtgtctccc
     9301 tttttattca cttaacgaga ggactcaatg ctcaatctaa acttatttaa acgacccatt
     9361 gaaatttcga cacttgaatc ttggtcaaaa ttctgtgatg atgttggtaa agtagctttt
     9421 gttgcagtac ctgctatgct gtatagtaat tacgagtttt ggattaagat aagcagtata
     9481 attggtctat ttatagctac ctatttctgt ttagttatcg gtagaaatat acgccaattt
     9541 attgagaagg agaaatcaaa atgggattaa tgatcggcat ttggattatt gcttttattg
     9601 catttgggtt ggccatatgg acaagccata ttctaaaaaa gcaagatgaa cgccttaaac
     9661 agctaaaaaa tagctaactt tcaaaatacg gcacattttg tgccgtattt cttttgtact
     9721 ggtggcaaat ataagattac tatcatcagt atattgtaat atctcaactc aacagcatta
     9781 gtcaaaaatc ctccaacata ttcagagagt ttttcctact gagttctctt attttttggt
     9841 tcaatactct ccctttataa attaaatttg gttcagataa aagccgctca atggcaaaag
     9901 gataaaggag cccttacggg caagggtaat cccctaaggg ggaataaggg taacctttcc
     9961 aaggggaaag gtcttaccca aaagggcaaa gggctaaacg gctttctttc aacgcaaaca
    10021 tcatcttttt cggtctattt caatgcactc aattctcaaa aaaattcttg gcaaaagtaa
    10081 atcctcgtct caaagttcgg ttaaatctga caatgttttc tctattgagc aggatagtga
    10141 gggctggtta tatccgaaaa atgcctccca actacttaat acggaattac gccaaaaata
    10201 tctgggtcta ctttggcaac aggtatcaat gaaccgtcaa atgtttgagg cactttatca
    10261 acagccaata gagcgttatg ccgaaatggt gcaactgtta cccgcttccg agtcacatca
    10321 tcattcacat atcggcggaa tgctcgatca cggtttggaa gttattgctt tttcagccaa
    10381 agtccgtcaa aactatatat tgccaccgaa tgtcgcacct gaagaacaat ctaagcaacg
    10441 aga
//
LOCUS       DANLXB010000092        10381 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLXB010000092 DANLXB010000000
VERSION     DANLXB010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10381
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            163..384
                     /locus_tag="PXD41_001541"
     CDS             163..384
                     /locus_tag="PXD41_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6289064.1"
                     /translation="MNIYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFP
                     VVRRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            406..1446
                     /locus_tag="PXD41_001542"
     CDS             406..1446
                     /locus_tag="PXD41_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6289065.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(1605..1892)
                     /gene="rplY"
                     /locus_tag="PXD41_001543"
     CDS             complement(1605..1892)
                     /gene="rplY"
                     /locus_tag="PXD41_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL6289066.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(2044..3312)
                     /locus_tag="PXD41_001544"
     CDS             complement(2044..3312)
                     /locus_tag="PXD41_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL6289067.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(3469..4380)
                     /locus_tag="PXD41_001545"
     CDS             complement(3469..4380)
                     /locus_tag="PXD41_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL6289068.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(4377..5096)
                     /gene="nfsA"
                     /locus_tag="PXD41_001546"
     CDS             complement(4377..5096)
                     /gene="nfsA"
                     /locus_tag="PXD41_001546"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL6289069.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(5108..5893)
                     /gene="mtgA"
                     /locus_tag="PXD41_001547"
     CDS             complement(5108..5893)
                     /gene="mtgA"
                     /locus_tag="PXD41_001547"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL6289070.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(5868..6188)
                     /gene="trpR"
                     /locus_tag="PXD41_001548"
     CDS             complement(5868..6188)
                     /gene="trpR"
                     /locus_tag="PXD41_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL6289071.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(6268..6909)
                     /gene="lolA"
                     /locus_tag="PXD41_001549"
     CDS             complement(6268..6909)
                     /gene="lolA"
                     /locus_tag="PXD41_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL6289072.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(7020..9878)
                     /gene="polA"
                     /locus_tag="PXD41_001550"
     CDS             complement(7020..9878)
                     /gene="polA"
                     /locus_tag="PXD41_001550"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL6289073.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
     gene            complement(10163..>10381)
                     /locus_tag="PXD41_001551"
     CDS             complement(10163..>10381)
                     /locus_tag="PXD41_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289074.1"
                     /translation="LNAKYVVGTGDDTDGEVTNFVIITSEYKYIDAQSAKAITDAPLT
                     KEDIGKTPTQIMLGRIYKYLKETGQIVV"
BASE COUNT         3059 a         2302 c         1912 g         3108 t
ORIGIN      
        1 atcaaataag atgccccaaa acctatgcta agttgagaga aatcctagaa gccaacgaag
       61 aaaatgttgt ccgcatcggt aatgtgagca tttcgatagg ttcaacgact taacgattat
      121 ttaaccaaat ccctctaaat gaggggttta tttggagaga atatgaacat ctacactgac
      181 ttcctttctc gtgaagagat tgaatttatt actcaatgca agcagaaaaa tctaatcaaa
      241 aaacaactca acattatggg cattccattt aaagaaaatg caaatggatt ccctgttgtc
      301 cgccgtgatt atgctcaggc taaacagcgt aaacctattg caacgaatga ttctgactgg
      361 gtatcaaatg catttaaagc gtaaattgag aagaaggagg cacttatggc acgccctcga
      421 aaatatgaaa acaacggatt gccacaaaac ctactctgcc gccgcagaaa acgagcaaac
      481 ggaagtatag ttgaatacta cttttacgtt cttgccgacg gcaaagaaag gtctctcggt
      541 acaaacaaac acgaagcaat tttagaagca gccaagctaa attttgaaaa tagtagaaaa
      601 tccccaattg ttttatttat tgatgtggca aaacgctatg aattggaagt tgttccaacc
      661 aaaaaagcca aaaacactcg tcaatctaat ttacaggcta ttcattggct atgtaaattc
      721 tttggtaacc cacctgcacc gctcgaaaaa attgagccaa agcacatcag tcaatattta
      781 caatggagaa aagacacgcc ggctgttgct aatattgagg taggtttatt taacacaatt
      841 tggaatatgg caagagaatg gggatacact gctcttccaa gcccatcaca aggtgtaaaa
      901 aaattcccga ccaaatatcg tgaagtttat gtagaggatt atatccttga taaaatctat
      961 gaatttgcag atgaaagaat ggcggatatt atcgaaacag cctatttgct gggacaaaga
     1021 ccgattgata tttgtaatat acaccgctca cacatctatg acggtatatt gcatattact
     1081 caacagaaga cagggaaaaa agtgagattt gaaattagtg gtcggctaaa agaaatttta
     1141 gataaaaggt tgggatacga atcagactgg atttttacca ataaatgggg gaaaaaatta
     1201 aaacggcgaa gtttaggcga tcattttaaa gaaataaggg agagagcaat gaaagcatat
     1261 cctgaacttg ctgatgaaat cgctaaagta caaatgcgtg atatgcgtgc caaagcagcc
     1321 accgatattt ccctaatgac aaccgatgaa caagctcaaa aacaacttgg gcatacatca
     1381 aaaagaatga cacatcatta catcagaaaa gacaaaatcc tcaaacctac cgatgaaatc
     1441 acctaaaaat aaagcccttt tgccaaatac aaaagagcca tttactcacc taaaatccgt
     1501 tccgaaacta ttttgtaaat aattgatttt attgacctaa aaaactataa aatcgcaaaa
     1561 agtttcggaa cagaaaacag cgttaaaccc ttgtaaatca aggattaagc acgtttgaag
     1621 tctaagtgaa ctaattttgg tttagttggg tggcgttgaa ttgcttgtac ttttacttgc
     1681 tcttctttac ctgcaacaac gatagttaat acttcgttat agaatgaatc gtgaacttgt
     1741 gcgttgttca ctttatcgtg atctaaaatg attgatacag gctctgcatt accaccgtag
     1801 atgattgcag gaacttgacc attgtgacgc aggcggcggc tcgcaccctt accttgcgca
     1861 gaacgaactt cagcttcaaa tttgaatgac atagttttat tctcttaaat aaaatgggga
     1921 aatccccgtg aatagaaaaa acagcaggcg acccagctgt ttccgaaaaa atatcggcat
     1981 atccgtctcg atatgccaac tacgtatttt actgaagttg cagaaaaatg caatgtaaaa
     2041 atattaagca accagttttt tcaactgctc tgcataagct tcccaatctg taattggtcg
     2101 agttgctaca cctgattgaa ttgctgcttt tgctacacca atcgagacat tcacgatcaa
     2161 acgtggatca aatggcgttg gaataatata ttccgggcca aacgataatt cgccataagt
     2221 tgaaataact tcaaacggca caggttcttt agccaactct gcaatcgcat gggctgctgc
     2281 cattttcatt tcttcattaa tggtttttgc cccaacatct aatgctccac ggaataagaa
     2341 cgggaaacaa agcacattat tcacttggtt tttaaagtct gaacgaccgg tacatacaat
     2401 cgcatctgga cggacagcct tcgcttcagc aggtgtaatt tccggcacag ggttcgctaa
     2461 agcaagaatt aatagatctt ttgccattgt tttaaccatt tcttgcgtta aagctccgcc
     2521 ttttgaacaa cctaagaaaa catctgcatt cgcaacggca tctgccaatg ttctccaacc
     2581 attatcttct attgcataga attgtttggt ttcatccatc ttatcaccac gaccttggaa
     2641 aataacgccc ttagaatcgc acattgtgat attttctttt ttcacaccta atgaacggag
     2701 taagttagta cacgcaatcg ctgatgctcc agcaccgttt accactaaac gtacttctga
     2761 aattgcttta cctaccactt gtaatccgtt aatcaccgcc gcaccggtaa taattgccgt
     2821 accgtgttga tcatcgtgga acacagggat tcccatacgt tcacgtaatt tttgctctac
     2881 ataaaaacat tcaggtgctt taatatcttc cagattaata ccaccaaaag tcggttctaa
     2941 cgatgcaata atctccacta atttctccgg atcagtttca ttaatttcaa tatcaaacac
     3001 atcaattccg gcaaatttct taaatagaac acctttgcct tccatcacag gcttacttgc
     3061 taaagcacca atattgccta agcctaacac tgctgtacca ttagaaatta ctgcaactaa
     3121 gttacctcgt gccgtataac gataagaagc tgaaggatct ttttcaatcg ctaagcaagg
     3181 ctcagcaacc ccaggagagt acgctaaagc taaatcgtgc tgagtatcta atgctttagt
     3241 aggagtaacg gaaatttttc cggggattgg gaactcgtga aaatcaagcg cctgttgttt
     3301 taaatcgctc attttagaaa ccttataatc tataaaaata aaagtaatca ataatagcca
     3361 aagagtagcc attttaccct aaattttttc gcatttttat ggctttgctc tcatttttta
     3421 tgatatttac aaaaaataat acaaaaacgt ccgcttgttt tactcaaatc aagcattctt
     3481 catcttattg ataaaataag aaaccatttc agaagctata tcaacatcat ttactctctc
     3541 tatgccttca aatcctgggc tggcattgac ttctaaaata actacgcctt tctctgtccg
     3601 cagaaaatca acgcctgcaa tatcaagccc tatcgtttta gttgctttaa ttgctaacgc
     3661 acgttccatc tgagttaatt caatcggttg agccgttcca ccttgatgaa tattggctct
     3721 aaaatcgcct gttacgctgg ttcggctcat ggcagcaacc acttcattgc caatcacaaa
     3781 cgcccgaata tcttgccctt tagcgtcgcc cacaaattgt tggcatagat aaggctcatt
     3841 tacttgccta aaggtcgcta acacggcctc ggcattattt ttgccttcaa atagcattac
     3901 gccattcccc tgtgaaccat ttagcacttt tgaaataagt ggaaaagcaa attgattgag
     3961 ttgtgatttc acagaaacca aatgccctgc aaaattcgta ttaggaaccg gcaaattgtg
     4021 tttggctaat ttttgtaatg ttcgccattt gtctcgggct aacgcaaatg ccgctgaatg
     4081 atttagaaca ggaatacctt tcgcctcaaa atggcgtaac accgaacagc ccatttcggt
     4141 actgcctgtg ccaaaacggg gtaaaatgcc gtcataattc ggcaacaata ccggctccgg
     4201 acggttgtta tcatagctct cgccagcttg atagtagatc ttaaattcgc cattttctaa
     4261 cccgagtagc attctattct ggtctaaaat atccagctca atcccctttg cctcacaagc
     4321 ggcttttatt cgacagcagc tatataaacg aggctctcga catagcatta gccacttcat
     4381 tttttcagca atcctttctg attgaaaaac ggcaaaatat gcggacgaac aggcttatcc
     4441 aatgttttat gaatagctgc ttgccattgt tgtggctcgc cgattctggc ttggtagtaa
     4501 gcggtcaaat tttcattata ttttgcaaat tcagtccaat caaaatcctg atattgattg
     4561 ttataacaaa ccaaactatt cggcaaacga ggttttattg ccggctcttg tgccggatac
     4621 cccaaacaca tacccaccag tggaacacaa tattccggca agttaagggc tttagaaacc
     4681 cgctcaatat cattacgcaa tgctccaata tacaccgctc ccagccctag tgattcggcg
     4741 gctaaaaata cattctgggc caaaataccg gtatctaccg ccccaatcaa cgacacctcc
     4801 gcccattcca actgcgattc agggacaagt tgtttgtgtt tattaaaatc aatgcagaac
     4861 accaaaaatt cagcacaatc tactacatat tgcatacctg aaacggcttt taatgtttct
     4921 cgaatctgcc gatcggttac acgaatcacc gtcacacatt gcagatgatt tgaacttgaa
     4981 gccgctttac ctgcctcaat taagatttgg aaaatctctt cagaaatagg ctgttcggta
     5041 aatttacgaa tagaacggtg agataaaatc gtctcaagag tcggtttact ttgcatattt
     5101 ttctcgtcta aagtttatct aaataatttt tgccatcaag caaacttact tgtcgcataa
     5161 tccacgcttg gcgttttcgc atactcgggc cgggtttatc taccctaaac accaacgggt
     5221 taggcaaaga ggctgccaat agtgcggatt cttgcaaggt tagctgtttg gctgattttt
     5281 tgaaaaaatg ctttgcggct gcttccaccc cgaaaatgcc gttaccaaat tccgcaatat
     5341 tgaggtacac ctctaaaatc cgatccttac tccacacatt ttcgactaac agggttaaag
     5401 gcacttcaat ccctttgcgt aaccagcttt gcccgtgcca caaaaacata ttttttaccg
     5461 tttgttgcga aatggttgaa cctccacgca cttttttgga tttagcattc agtttcaagg
     5521 cagtttctat cgcttgtaag tcaatgccaa aatggctttc aaacttttga tcttctgagg
     5581 caatcacagc catttgcatt tgccacgaaa tctcattcag gctcacccat tcttttttga
     5641 tcgggtaaga tttcccctga accagattct ccaccttttt ttgcaccata tacgcagaat
     5701 aaggcaccgg taacaccgaa aaaatcagta tcggaatcag gaaaaatgtg ccaccaaagg
     5761 ttaataagcg actagaacca aaccaaagcc agcccagttt actttttatt ttgcgaggaa
     5821 taaaaaaaag ccctattttc ttcaaaagag agcttaaaaa tcgcttgtta cgctttgcca
     5881 ttgactgttc cattaacctt gccgttcagc cattgcagaa aatcttggtc gagtgtttta
     5941 agcatatttg aaccacgagt gatggttgcc gcactggtat ttaaattttg ttggatttcc
     6001 cgttgcgaat cttcaccttt tagcaaagct tgcacaattt gtaaacgcaa gcctaatgaa
     6061 cctcgctcat cggcggtgag aaacattgag aaaaacggct caagtttatc ttccgcaacc
     6121 gcttgttcaa gcagagccaa aaactgcgtc cactcgtttg gatctcgctg gttatagagt
     6181 gttttcatac tgtcccttga agtaaaaacg gtgacaagcg gtcagatttt tacaaaattt
     6241 tgcagaaaaa cgaccgcttg ctctccatta ttttttcgat tttttaccgc cacgttggtc
     6301 gtctaactct gcccctttcg gtacgctgaa tttaaacaaa tcgcttgaga caccgccggt
     6361 agtaatattg cgtaacacat ataagttact ttgcccgtca cgctcaatgg tactgaaacc
     6421 ttttaataaa ccgctttggt caatccgcac atcaaactgt tttaaattgc tttttttcga
     6481 ttttggctta agcacgaaag tatcagcact ctggctgaca tcatattgat cccagtggct
     6541 tttatcaccg ctggttaata agacgaatgg cgtattatta actgcatctt gcacggtatt
     6601 taccgtaact tgtgaaacga aaggatcgta aaaccataaa tctttgccgt cagatacaat
     6661 caaattttct tgtggtgatt tggtatccat tctaaataag ttcgggcgtt ttacttggaa
     6721 tttgcctttg ccttgctgaa tttgtttacc tttgctagaa cgcacggttt ggtcgaaatc
     6781 cgcactatat tggcttactt gttccaaacg gcgttgtaat tctgcaacag attgagcatc
     6841 agccaatgcc acatttgcca agccaaataa cgctaaaccg aataccgatt ttttaaataa
     6901 tgttttcatt tgttttcctt tttaccaaca agaattttct tgtttgacaa taaaatcatc
     6961 aaaagtttca tattaatgaa ctgttacaac aatacaataa aagtcgtgaa ttgtatagtt
     7021 taatgagctt cgtcccagtt ttcgcctacg ccaacttcgg caatcagtgg cactttgagg
     7081 ctaatcgctt tttccatttc ggttttgatt aattggctgt aatggtcgat tttatcggct
     7141 ttgacttcaa acaccaattc atcgtgaacc tgcataatca ttttgatttc atcattatca
     7201 cgaatcgcat tatcaatacc aatcatcgcc accttaataa tatcggcagc cgtgccttgc
     7261 attggggcgt tgattgccac ccgttctgct gctttacgca aaatagcatt gccggattta
     7321 atatcaggca agtacaaacg gcgaccaaat agggtttcaa catagccttt ttcaactgca
     7381 acttcacgaa tatcggtcat aaattgttga accgccgggt aacgttggaa gtagagatcc
     7441 atatattttt gagcctctgc acgcccaatc cctaattggt ttgaaagccc aaatgacgac
     7501 attccgtaaa tcagcccgaa gttaattgct ttcgcactgc ggcgttgttc ggaggtgact
     7561 tcacctaact ccaccccgaa aatttcggca gcggtagcac ggtgaatatc tttgccctcc
     7621 gcaaaggcgt taatcattcc ctcatcattc gataaatgag ccataatccg tagctcaatt
     7681 tgtgaatagt cggcagcgac aattttataa ccttctctcg cgacaaaagc ttggcgaatc
     7741 cgtctgccct cttcattgcg gatcggaatg ttctgcaaat tcggatcgct ggaagaaagg
     7801 cgtccggttg cggtgactgc ttgattgtaa gaggtatgca cccgccctgt ttttttgtta
     7861 atcagttgtg gtaatttatc ggtgtaggta gatttcaact tacttaaccc acgatgctcc
     7921 attaataact tcggcactaa atgcccttgt tgagccaact cgtctaacac ttcttcgttg
     7981 gttgagggtg caccttttgg agttttcttc aacaccggca agcctaattt ttcaaacaaa
     8041 atctcttgta attgtttagt tgaggcaaga ttgaaggttt gccctgcttc tgcgtgtact
     8101 aatgtttcaa cttcctccaa acgtttttca atttcagccg attgggtcaa taattttttc
     8161 gggtcaatca acacgccatt gcgttcaatt cgagaaagta cgcccacaag tggcatttca
     8221 atttcatcga ataacttcac caattcaggc tcttgctgta gtttttccca caatacttgg
     8281 tggagtttca tcgtcacatc ggcatcttct gccgcatatt cagccgcttt tgctatctcg
     8341 attttatcga aggtcagttg atttttcccc ttaccagcaa gctcttcaaa cggaatcgtt
     8401 ttatgcccca aataacgggc ggctaaatcg tccatattat gacgaccggt gctgttttgg
     8461 gtgtaagatt caatcatcgt atcaaaagca acaccttgta gctcaatgcc gtagttcgca
     8521 aaaatggtta aatcatattt aatattctgc ccgatctttt taatctccgg gttaagcaaa
     8581 atcggcttga gtttacttaa acaagcggtc aaatttagct gattttttac caattcatcg
     8641 gaagacgggc tttctgaacg ctcctcatca ccgaacatat cggcttgttg cggttgggct
     8701 ttttgcttat gcccaagcgg aatatagcac gcctcgccat tttccagtgc aaaggaaata
     8761 ccgaccaaat tagccgacat tgcgtcaagg ctgtcggttt cggtatccac cgcaatcaaa
     8821 cgagctgcgg tgagtttttc gatccaggct gataatttct gttcagtatc aacggtctca
     8881 tatttgctac gatcgatctc gaccacattt gcaacatttt cctcatttct gaccgcttgt
     8941 gttacttggt aattattcgg tactttttca gccgaagttt gagtgaccgg attggcattt
     9001 tgattcactt cgttcagcca gcgtttaaat tcataatgct caaataattg agcaagctca
     9061 gcacggtctt gcggctgtgt taaaagttga tcgtgagtaa catcaagttc cacatcggtt
     9121 ttgatggtag caagcaaata ggataaatcg gcattcgctt tttccgcttc caattttggg
     9181 gcgaaatttt ttgccccacg gaaagaaagg gtggcaattt gatccaaatt agcataaatc
     9241 tgttcaagtg aaccaatgcc ttgcaataaa gctaatgcgg tcttttcccc cacacctttt
     9301 acgcccggaa tgttatcggc ggaatcgccc attaatgcca gaaagtcgat aatcaactca
     9361 ggcggaatgc catatttttc aatcacgcct tcacgatcta acaaagtatt gttcatcgtg
     9421 ttaatcaaca taatgtgatc gttcaccaat tgtgccatat ctttatcgcc ggtgctgatc
     9481 aacacatctt tgccgtcttt agcggcttgc acagcaagcg tgccgatcac atcatcagct
     9541 tccacacctt caatcgaaat cagtggaatg cctaaggctt tgataatgcg atgcaaaggc
     9601 tcaatttgag ggcgtaaatc atcgggcatt ggtgggcggt gcgatttata ttgcttaaac
     9661 aactcatcac ggaaggtttt ccctttggca tcaaacacca cagcaatatg gcttggattc
     9721 acttgtgaaa tcaggctttt taacatattc agcacgccat acattgcccc tgtcggttcg
     9781 cctaagcgat tagtgagcgg agggaaagcg tgaaatgctc gatataaata ggaagaacca
     9841 tccaccaata ccagtggatt ttttgcgata gttgccataa aaatctcttt ataatcaaat
     9901 aaatattggc gttattatac aagaatattt aagaattgag tgtgtataag gcttatttta
     9961 aataaaacgt tccgaaaaaa cattgaattt cattaaaaaa ttcctttatt tatcaaataa
    10021 atgcgatttg tttcggaacg tttttttaat gcttattttg caacatacgg attatcaatg
    10081 gaaagcgttg ctgtagacat tgtgcctcct agtacaaaaa aaccgcttgg tttccctaag
    10141 cggttctaat ctataagaac tattaaacta caatctgccc cgtctctttt aagtacttat
    10201 agatacgccc taacataatc tgcgttggcg ttttgccaat atcctctttt gttagcggtg
    10261 catcagtaat cgctttggct gattgagcat caatatattt gtactcactt gtgatgatta
    10321 caaagtttgt tacctcgcca tcggtatcat cacctgtgcc aacaacatac ttagcattga
    10381 g
//
LOCUS       DANLXB010000093        10034 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLXB010000093 DANLXB010000000
VERSION     DANLXB010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10034
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            93..323
                     /locus_tag="PXD41_001552"
     CDS             93..323
                     /locus_tag="PXD41_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289075.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            705..941
                     /locus_tag="PXD41_001553"
     CDS             705..941
                     /locus_tag="PXD41_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289076.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            1248..1323
                     /locus_tag="PXD41_001554"
     tRNA            1248..1323
                     /locus_tag="PXD41_001554"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1281..1283,aa:Arg,seq:tct)
     gene            1510..2016
                     /locus_tag="PXD41_001555"
     CDS             1510..2016
                     /locus_tag="PXD41_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289077.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            2020..2379
                     /locus_tag="PXD41_001556"
     CDS             2020..2379
                     /locus_tag="PXD41_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289078.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            2376..2855
                     /locus_tag="PXD41_001557"
     CDS             2376..2855
                     /locus_tag="PXD41_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289079.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            2989..3201
                     /locus_tag="PXD41_001558"
     CDS             2989..3201
                     /locus_tag="PXD41_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289080.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            3214..4164
                     /locus_tag="PXD41_001559"
     CDS             3214..4164
                     /locus_tag="PXD41_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289081.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            4205..4999
                     /gene="bet"
                     /locus_tag="PXD41_001560"
     CDS             4205..4999
                     /gene="bet"
                     /locus_tag="PXD41_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL6289082.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            4996..5631
                     /locus_tag="PXD41_001561"
     CDS             4996..5631
                     /locus_tag="PXD41_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL6289083.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            5644..5820
                     /locus_tag="PXD41_001562"
     CDS             5644..5820
                     /locus_tag="PXD41_001562"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289084.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            5841..6293
                     /locus_tag="PXD41_001563"
     CDS             5841..6293
                     /locus_tag="PXD41_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL6289085.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            6371..6898
                     /locus_tag="PXD41_001564"
     CDS             6371..6898
                     /locus_tag="PXD41_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6289086.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            6895..7098
                     /locus_tag="PXD41_001565"
     CDS             6895..7098
                     /locus_tag="PXD41_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289087.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            7082..7546
                     /locus_tag="PXD41_001566"
     CDS             7082..7546
                     /locus_tag="PXD41_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6289088.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            7640..7810
                     /locus_tag="PXD41_001567"
                     /pseudo
     CDS             7640..7810
                     /locus_tag="PXD41_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8046..8537
                     /locus_tag="PXD41_001568"
     CDS             8046..8537
                     /locus_tag="PXD41_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6289089.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPLVLFADNRQIETTMKDRDKIR
                     HLEIKPDVLHDFTNMPYENESFWHIVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            8564..8821
                     /locus_tag="PXD41_001569"
     CDS             8564..8821
                     /locus_tag="PXD41_001569"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289090.1"
                     /translation="MEQIKLSEKAERALILSQLNENSAMIIDLDDVALILNCGYDYVQ
                     SKISKKPGFPEPVQGINGKSVLFKSGDVIRWVNRQARTRKN"
     gene            complement(8818..9807)
                     /locus_tag="PXD41_001570"
     CDS             complement(8818..9807)
                     /locus_tag="PXD41_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6289091.1"
                     /translation="MASIRKRGSKYQVEISKKGVRKSATFRTKAEAQAWAYEEERKIE
                     IISKGGVVDILFAEALERYQNEVSINKRTWRREIGRINNILKEPIANRYVQDIKRDDI
                     EDWIEARLKRGLKGSSVERDLSILSNVFTYCLKRWGYISENPMIGVIHPNKVPPRKQR
                     YSQEDIDKILEVSKYREDIKRSNARLAAAMLFAIETAMRAGEISGLTWDNVNFEKRIA
                     HLPMTKNGSSRDVPLSSKAIEILKRLETIKKDNSVFQLPQGNGLSARFFELKEKAGLS
                     YLNFHDTRREALSRLAKKVDVMTLAKISGHKDVKILLNTYYAPNMEEVAHLLD"
BASE COUNT         3413 a         2049 c         2037 g         2535 t
ORIGIN      
        1 aaataattac aaattgaatt gacttaatga tttcaatttg tgataataaa cccatcaaaa
       61 caaacaacgc cacagacaaa gaggaaacca aaatgaacgc acaagcaacg ctaaataacc
      121 acaaagacta cattttatgc ggacgcaaag aaaaacgcac cagtgatttc atcaatgtgt
      181 ttgaggtctt tgaaaatgaa gccacgcaag agtttgtgat tgaaagagca atgttcagaa
      241 atggcaagtt aatcgactgg aaccaaagcg acaaaatgaa cgccgagcaa gctcaacaac
      301 tttggcaagc ctacattcac taagaatttt tatcaaagcc cttcacggag ggcttgaata
      361 aaggttctaa acctcgccga aaggcattgt tctttaaaaa ttaaaccaaa aacacatcac
      421 gacaagcgga ttacttagca atgtaatgac attggagaga cagaaccaat ctttgcataa
      481 agcggtaaaa cgtatgcggt aaatgaactt ataggcaagt tgtgaaactc tctaagctac
      541 tcggactgaa agaatagtac ggtagttgtg gcgaatttac tggtgatgtg cgaactagcg
      601 gaaaggttaa gcactggcag tgaatcggga agcacaaacg ctggttcaat tccaaagcat
      661 atttgagaaa gtgtgctttg gaatattaat aacaggagaa caaaatgagt aatcaggaat
      721 ttgttaaatt aggcagcgtt gaaccttcaa cgattgatga attacagaaa gaagatatta
      781 ggcaggcaat attaaaatcc gtctctataa cgccatatta tgtggggctg gaaatagcgg
      841 tttgccaagc aatatcagcc atcaataaat ttagtgatgg ctgtattaca gaagagcttt
      901 tagatacgaa aaatggtgat aaataccgaa aaaataacta atcaataaca ccaaagtgat
      961 ttcatttttt cggcattagc cctagatgtt gcccaagtat tatattcctc gaagttgtgg
     1021 caaacaagag gacttggccc ggtggctcac aagtataaaa aagagccacc atctctaaca
     1081 gctctcaaca gagagtgaga caaataaccc cgttttagtt ttaatgtttt ctaaagtcgg
     1141 cgttaggcag cgaaacgaat gtactagaga gttgttagag atggttagtc catcacattc
     1201 cttagattga agtaagccct gccgttgggg ttaagcaacg gtactttgac cgcatagttc
     1261 agtggataga gcagctgcct tctaagcagt gggtcgagag ttcgaatctc tctgcggtcg
     1321 ccatccaaaa ccgctttacg cacatcatcg atgacgagcc tacgaagtgg aaacctaccg
     1381 tgtagagcgg ttttgaatgg ctaagttgtg taactgctac aacttaaaaa gagcggttga
     1441 taataaacat aatgactccg tttccccgcc tcgtgcgggg ctttttttat ccacataaaa
     1501 ggattcaaaa tgaaaactaa atacaaaatt attattgagc gagcaaaaca acagggtttg
     1561 acccatattg agcttactca aaaacattgt ctgtatctcg ctacatcagt agggaaactg
     1621 tgctacgggg tagctaataa tgcagaacaa catattaaac ttgctgctgg agagattttt
     1681 acactactaa cgatcattaa ccatcaaatc cagttcgatg aagacttaga gcttcacacg
     1741 tggaaagcta gtggaacaac cccacccgag caaagagcga tacgtatgtt acatcatacc
     1801 tcgcaatttg cttggtttgc tccttggtta gtggacagca atgaaaaaga acaaaaccaa
     1861 aatacaatca ggattaattt atttaacaaa tgctctggga ttctgattga actaaatggc
     1921 attcttaaag aatacgagct aactcttgat gagtgcttag atgaattctt gaaaaataag
     1981 cattgtttga atgaatttag tattcacaag gagtaaaaaa tgacgacgtt tagtatttat
     2041 accagtgtat ggcacgacag ctccacgaaa ggctttcgcc acaacattaa gcataaacgc
     2101 cacgattgct ggagagcgga tatccgcata aagcaaaaaa tcaatgatgt gtgggtgcag
     2161 atttcaagga tacgcaaacg cttcaagtgc cctgaacagg caaaatcctt tgtagaacaa
     2221 tggaaacaaa ttgattcacc tgcatttatg caacaccaaa tcaaccgcca agcattaaga
     2281 gaagaattat caaaccttga gcaacgcaaa cagaagcaag acggaatact tgaggtgatt
     2341 gagtatcgta ttagccaaat caaggagttg ctgaaatgaa acgcaataaa gtagaaagct
     2401 atactatccg cttattaaaa aataatcata caaaacgcta cttcggagaa gttatattaa
     2461 acggcataaa agaaatcagc acggcagaga tgatgtctga aattaacgct attaaggcag
     2521 taaataagcg cattgaagct ctgaataaaa ccaaagccgt taatttgcct aattatcctg
     2581 aaatccgggg tcatcagcct attatgtaca attacaattt tgaacaaatt gaggaagatc
     2641 ctgaacaggt taagcctaaa ccatcaaaac caaaacgcaa gccattcata ccttatgggc
     2701 taaacggcta ctttgtggat agcaacggta atattcgctt acatctagac agacgagcaa
     2761 gtgccgaaac aattaccctt gaaactgatt tcttcaacgt tcttgccgaa atggtaaaac
     2821 gtacacaaga ggcaaacaat gctaaacatg cttagacaat ggattaaata cggcttatac
     2881 gccctgcttt ttatggttgc catcaccctc ctaatgcaat gaagagctta tccctgaaag
     2941 cacctgcaag cctgaaactt gcgaatttaa agtaacggag aaagtgtgat gataggatac
     3001 gaagactaca cagatgcttc acttcaacca gaagaagacc ctagcgaaga ggctttcatc
     3061 ttggctgaag aaaacatcat cgagctatta gaaaacaacg gctttgaaac cattgccacc
     3121 atcctagccg gttctgatgg ctggcgtaac gcaatcaacg cctacctagc cgaacagaac
     3181 aaacacagaa atgaatttta gaggaataag aaaatgacaa ctgcaaatca acaatttgaa
     3241 cttattttaa aaaccgaaag ccgagtggtt tctaccaact tgcaaacttt tgaagagcaa
     3301 gcaaatcaat accttgccac gctcaccacc acctttgaaa ccgatgatga ttttgcaaaa
     3361 gcaaaagaag aagtgaagga gcttgaaagc attgagaaaa aaattcgtga cgcaattaaa
     3421 caaacgcaaa ctggcgagat tgcggaattg gtattaacag cagaacaaat cgctgaacgt
     3481 ttccgccaag agcgattaac ccgagacaag ctcgttaaga gcaaagaaac ggaaatcaaa
     3541 aaacagattg ccgataaagc cattgaagaa atcactgata ccagaaacaa gctggttaaa
     3601 gtaagtgata tttcccttgc cttagaaatc acaatgccaa aacacggcat tgctaatcgt
     3661 attgccgagg cacagaaaaa taaacgcacg attgacagct taaccaaagc cgtgaacgcc
     3721 gaaaaagcgc tgattatcag cgaaatgtcg gtagaaatcg ggcgcttgac tgagcgatta
     3781 gaacagcttg ctgcaaaatc agcttatctt tttcctgatg cagtgaaatt gatcgcaacc
     3841 caagacgacc tcgccccaat tattcaacaa cgccttgccg aagaagccga gcgtgaggcg
     3901 gcgattaaag ccaaagcaga agccgacaaa gtacaagccg aagccaaagc gattactgat
     3961 aaaatggagc gcaaacaagc ggtcgaaaat ccgcaaaatg tggcaaaaat gaacatcgaa
     4021 gaaccggcac aaaccgatgg gccattaggc gattttatca ttactattcg cttaaaccaa
     4081 acaatccaaa ccaacgcagt cagtattgct cgtgagctga aagcgaaatt tggggatagc
     4141 gtttcgctca ataaggctaa atgatttgat accgcacaaa ttcaacctaa ataaggatca
     4201 tattatgaca actgcattac aaacactaac caacaaactt gccgagcgtt ttgaaatggg
     4261 agatggctca ggattagttg agacacttaa atcgtctgct ttcgcagggg caaccgtaag
     4321 cgatgctcaa atgattgcac tattggttat tgctaaccaa taccaattaa acccttggac
     4381 aaaagaaatt tatgcattcc ccggtgggaa cggtggatta acgcctattg tcggcgttga
     4441 tggttgggtt cgcattatta accgtgagcc tcaatatgat ggaatggaat ttcattttac
     4501 cgatgactat tccgcctgta cttgtactat ctaccgtaaa gatagaagta aaccgattgt
     4561 ggtgacggaa tttatggggg aatgtaaaaa gagctctcca gcttggaact ctcacccaaa
     4621 aagaatgtta cgccataaag caatgatcca atgtgcaaga ttagcctttg gctttacggg
     4681 tatttacgac caagacgaag cagagcgtat tgcggaaaat gaaaaaccac ctaaaaacat
     4741 cacaccacaa aataacgtgg tagaaaccac tgccgttgaa ctcatttcgg aagaacaact
     4801 gtcgcaaatc cggcagttaa tgcaagtaac cggtacggag gaggcgaaaa ttctcgccta
     4861 tattggcgtt caagcactga accaaatccc taaatcgcag gcagaggcag tgattaaaaa
     4921 gctcaatctt acgctagaca agcaaaacgc tgaaaaggcg gataatggcg aaagtgtcgg
     4981 tgaggaaatc ccactatgac aggcgattta atcattttag attgcgaaca aggatcagaa
     5041 gaatggctca atgccagatt gggcattccc accgccacag gcattgaaaa tatcgttacg
     5101 ccaagcggta aaaaatcgtc cgcttggaat agctatcttg ccgaactggt tgccgaaagc
     5161 attgagggag caaaagacgg ttttaagtcg tctgatatgg cacgaggcaa cgagcttgaa
     5221 ccgcttgcac gaatggctta cgagtttgaa accgacaccg aagtcgtgca agtcggcggt
     5281 gtgtacctta acgccgaaaa acagttaatg gtaagtcctg acggcttaat tcccaatcta
     5341 aaaaaagggt tggaaatcaa atgcccgaaa atgaaaaccc acatcaaata cctgctagaa
     5401 ggcggtgtgc cgaatgaata tcttattcaa gtgcaatctg ccctttgggt aacaggctac
     5461 gaaacgtggg actttgtcag ctactgcccc gaataccaaa aacaaccgct ttacatctac
     5521 acagccgaac gtgatccggt attgatgaaa gcctttgatc aatatatccc gcaatttatc
     5581 aaatcccttt atgcattgaa gggggtaacc gccccgaaag gggcttttta ataggtagcc
     5641 aatatgacaa cccaaaagaa atacgaacta ctccaaaacg acacaatcaa ccacaacggc
     5701 agaacactct accgcatcaa agccatatgc cactttaggc ggacggctga atattccgca
     5761 agagccactc acgccacagc cgctgaatgc tatggtggaa ttgcctgtac atcaacataa
     5821 ccacaaacac ggagaataaa atgaaaccat ttgatttaaa taaagcattg gcaggtgagc
     5881 cagtaaaact aagaaataat gataaggcat ttgtaaaata cctaattagt gatgactata
     5941 ttagagataa taaagaccac caagtacaag ggtatacagt tgatgaagaa aatgtatttt
     6001 tgtcagaagt atcgtgggct gttagcggat ctcatttcaa tgatggaaca atagctcaat
     6061 atgatattgt tggtatgtgg gaagaaccaa gaccagcagt aacattgacg ttaccttgcc
     6121 cattaaaaga acctcaagaa aatatgtggt ttattgacaa tgattttacc atagtaaaat
     6181 ctatgttcgc aaatgccccc tttgtaaaaa aattcttgcc acaagggcga tgtttcgctt
     6241 cagaagaaga cgctcaagaa tggttagatg caatgcgaaa tagtcgtagg taaatcggca
     6301 gcactaacag ctgaatgctg ctgttgaatt tcttgtatat ccacataaac acggaacgcg
     6361 gagaaagaaa atgaatgaag aaaaatattt ttcggtcgat gtctcggatg agacacatgt
     6421 aataaggttg cacgaaacat tagagcaagc aaaacaaagc tgtttaaatg gtgctactga
     6481 agcctatgag tttgcgggtg acatggatga tcacgaaagc tatgaaagct atgaagccta
     6541 tgatttaccc tatgcagttt atggtgttgt tttaggtaga gcaaaatcag atattcgtcc
     6601 actaacagac gaagaaagag catcggagtt atttggggaa gctgaacaag ttattgaacc
     6661 accaacactt ttagaaaaca acggctggat ttccattgag gacaaattac cacctattga
     6721 aacggatgtg ctagggttat gcgatatttc aggaatgcag ttaattttaa tagtttcaag
     6781 agaacttgcc gataacgagt ggtattttct tagtgtaaat caatatgggc ttgatgacga
     6841 tgtgattgca gtaacccact ggcaaccact tcccgaacca ccaaaggagg aaaaatgacc
     6901 gacaccgaac gcttagactt tatcgcccaa cgcaaattag atgtccgata ttctgatttg
     6961 gtggacgaat ttattattgc tagctatacc aaaccgcacg agcagtattt tcattgggca
     7021 agaaatgccg atttacgcac ggcgattgat gaagcaatga aagaaatgag aggactaaac
     7081 aatgcaacaa ctaattaaaa acatcgaaca atgggcggaa gaccgcaatt taattaacgg
     7141 ctcaacccca caaaagcaaa tgctcaaact gatggaagag tttggcgaac tctgcggagg
     7201 cattgcccgc aataatcctg aaatgattaa agatgcgatt ggggatttga ttgttgtctg
     7261 tattattaaa gcaaaacaag aaaaacaacc tatttaccct gtacaatttg aaaatcatag
     7321 attaaatggt tacagatttg atatttcggt cgctgttcat tgtctatatg atattgaacg
     7381 cattaaagac agaggtaaat atagccgttt ttttggcata ttacaccatt tagccttaat
     7441 aaatagattt acgcttaatg actgcctcgc tcacgcctac gaccaaatca aagatcgcaa
     7501 gggcgaaatg caagctggga tttgggttaa agaagacgat ttatagtacc taagctataa
     7561 aaaccgaaac atcttgcaga aaagcattcc gccactctat aagagtttcg gtttcttctt
     7621 cgttggcgtt gattatgttt acacgcacgc taccgagtat caaaccacgc ttggcgtaat
     7681 gaagcggata cttgaaccga tgttagccga cttcgaggtc gatccgtttg aagaggctca
     7741 ctaccacaaa gccctaacta ccttaaggca ataccagccg aaaggcttag gcggcttagt
     7801 ccgaatttaa tttgcaaaaa aatcacacaa tccgaccgct tgtgaaacaa caagcggcgg
     7861 atttccatac ccaaattttg aggacaagcc gatgaaatac gcaaaaatca ttctattttt
     7921 aaccgccttt gcagttgctg ctgaccatct agagttacgc aacgactgcg atggcaaaat
     7981 ttgtatggct caacgctaat taacccaacc gcttgttccg caagcggtta ttttttggag
     8041 gaaaaatgca aacaaaaccg atattagatg cgtgttgtgg ttcccgtatg tttcattttg
     8101 acaagcaaaa tccactcgtc ctgtttgctg ataatcgaca aatagaaacc acaatgaaag
     8161 accgagacaa aatccgccat ttagaaatca aacctgatgt tttacacgat ttcacgaata
     8221 tgccatacga aaacgagagt ttttggcaca ttgtttttga tccgccacat ttagttcaag
     8281 gtggagaaaa tagctggctt gtaaagaaat acggcaaatt accttgcaac tggcgagaag
     8341 tcttgaagaa aggctttgac gaatgtatgc gagtgctaaa accaaacggc acgcttattt
     8401 tcaagtggaa tgaaacacaa atccccgttt cagaaatttt aaaagttatt gattgtcagc
     8461 cgatttatgg acacaaaagc ggacgcttaa accaaacaca ttggctggcg tttgtgaaaa
     8521 ttgagcaatc cctctaaatg aggggtttat ttttggagag aatatggaac aaattaaact
     8581 ttcagaaaaa gcggagagag ccttaattct ttctcagctc aacgaaaatt cagcaatgat
     8641 tattgattta gatgatgttg ccctgatttt gaattgcgga tatgactatg tgcaatccaa
     8701 gatcagtaaa aagcccggtt tcccagagcc agtgcaaggc attaacggga aatcagttct
     8761 tttcaaaagt ggcgatgtta tccgttgggt caaccgtcaa gcacgaacac gcaaaaatta
     8821 atccagcaaa tgagcgactt cttccatatt tggggcgtag taagtgttaa gcaaaatctt
     8881 cacatcttta tgccctgaaa ttttggctaa ggtcatcaca tcgacttttt ttgccaagcg
     8941 tgaaagagcc tctctcctcg tgtcgtgaaa attcaaataa gaaagcccag ccttttcttt
     9001 taactcaaag aatctagcac ttaaaccatt cccttgtgga agctgaaaaa cggaattatc
     9061 ctttttgatg gtttccagtc ttttcaagat ctcgattgcc tttgatgata acggaacgtc
     9121 tcttgatgaa ccgttttttg tcataggcaa atgagctatt cttttctcaa aattcacatt
     9181 atcccacgtt aaacccgaaa tctcaccggc acgcattgcc gtttcaatcg caaataacat
     9241 agccgcagcc aatcgagcat tagagcgttt aatatcttct cggtatttgc tgacttctaa
     9301 gattttatca atatcttcct gggaataacg ctgttttctt ggtggcactt tgtttgggtg
     9361 aataacaccg atcatcggat tttcactaat atagccccag cgttttaagc agtaggtaaa
     9421 tacattgctt aaaatagaca aatccctctc aacacttgag ccttttaacc ctctcttcaa
     9481 tctagcttcg atccaatctt caatatcatc tcgcttaata tcttgtacat aacgattcgc
     9541 aataggctct ttcaatatgt tattgattcg acctatctct cgtcgccacg tcctcttatt
     9601 aatcgatact tcattttgat accgctctaa cgcttccgca aataaaatat caactacccc
     9661 acctttcgag atgatctcta ttttacgctc ttcttcgtaa gcccatgcct gtgcctctgc
     9721 ttttgtgcgg aaggtagctg attttctcac ccctttcttc gagatttcga cttgatattt
     9781 actgccccgc ttgcgaatgc tcgccatatt tttacctgcc ttttgtcgta aatttgtcgt
     9841 aatttatacc atacaataac cgacaataac agataataac cgattttatg aaatcatctt
     9901 aaggcaaaga agagaggaaa aacttaagat aacctattga aataactata ataaacgata
     9961 ataaccgaca aaaaacggaa ataaaaaaaa gcccctaatc aaaaaagcga aaaggggcgg
    10021 aagtcttacc taag
//
LOCUS       DANLXB010000094         9918 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLXB010000094 DANLXB010000000
VERSION     DANLXB010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9918
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            224..1930
                     /locus_tag="PXD41_001571"
     CDS             224..1930
                     /locus_tag="PXD41_001571"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL6289092.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            1979..2818
                     /gene="menH"
                     /locus_tag="PXD41_001572"
     CDS             1979..2818
                     /gene="menH"
                     /locus_tag="PXD41_001572"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL6289093.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2867..3544)
                     /locus_tag="PXD41_001573"
                     /pseudo
     CDS             complement(2867..3544)
                     /locus_tag="PXD41_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3630..4292
                     /locus_tag="PXD41_001574"
     CDS             3630..4292
                     /locus_tag="PXD41_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL6289094.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4282..6210
                     /locus_tag="PXD41_001575"
     CDS             4282..6210
                     /locus_tag="PXD41_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL6289095.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6210..7097
                     /locus_tag="PXD41_001576"
     CDS             6210..7097
                     /locus_tag="PXD41_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL6289096.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            7055..8161
                     /locus_tag="PXD41_001577"
     CDS             7055..8161
                     /locus_tag="PXD41_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL6289097.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8158..9582
                     /locus_tag="PXD41_001578"
     CDS             8158..9582
                     /locus_tag="PXD41_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289098.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9697..9903
                     /locus_tag="PXD41_001579"
     CDS             9697..9903
                     /locus_tag="PXD41_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL6289099.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3077 a         1996 c         2131 g         2714 t
ORIGIN      
        1 atgaataaaa ttataaacta aaacacaaat tcgaaatacg tttcttcgta aatgctctta
       61 aaaaagagag agtttactaa gtaaagtgtt gctcaataga tagaaatttt cacgaagttt
      121 tacaaaaaca ttccaatttt ctcctaaaaa acttcccaca ataatttcac tttttgctac
      181 aatcctaacc atttatcgaa tttatcaatc agtagagaag aatatgaata ccagttcttt
      241 taatcgcact tgggcaaaag tgattttaag tgcattaatg cgttatggcg taaaacattt
      301 ttgtattgct ccgggttctc gctcaacacc gctcacatta gcggcagtgc aacttcaaca
      361 aacgcaatat gcagagtgcc acactcattt tgatgagcgt ggtttaggtt tttatgcgtt
      421 agggattgct aaagcaaccg acagcccggt tgctattatt gtcacttccg gcacagcagt
      481 agcgaacctt tatcctgcgg tgatagaggc aagcctgagc caccaaaaac tgattattct
      541 ttctgccgac cgcccaaccg aattaatcgg ctgtggggta aaccaagcca ttcatcagca
      601 aggtattttt gccaattacc cggttgccag tgtcaatcta ccgaaagcga acgaggctta
      661 ccacgcaagc tggctggttt cgaccattga gcaagcctgc actacccaag cacaacaagg
      721 cggtgtgttg catatcaatg tgccttttga agagccgctt tacgaagcag acattaatga
      781 aattctaaat acaccttggt tacgcccaat ccaaggctgg ttgaataacg ctcaaaccaa
      841 atggatagac caacaagcga ttcaaagcga agtctcaatg cacgaaaatt gggattactg
      901 gcgaactaaa cgaggggtga ttgtggtcgg caaactgccg ccggaacaag gcacaggttt
      961 aaaaacttgg gcggaaacca tgggttggtg cttgctaagt gatgtgcaat cttgcattga
     1021 agccagcctg ccgtatgccg atatttggct ctccaacgag actgtcaaac agcgtttatt
     1081 gcaagcggat atcgtgattc aattcggcac gcaaattgtc agcaaacggg tgaatgaatt
     1141 tttaaaagca ttccaagggg aatattgggt ggtggaacaa tcgcacgatt accataatcc
     1201 aaacgctcat catcaaaccc gttttattgc caaagcacat cactttttgc gggtacaccc
     1261 accacttcgc caaaagccat ggttgcttga gccattggca ttatcgcaat tctgctccac
     1321 tttcatagag caacaagtgg gtggcagctt aagtgaagcc tcacttgcac acaacattca
     1381 agatgtttta gcaattaatg gcaacttatt tatcggcaat agcttatttg ttcgattggt
     1441 tgatgctctg tgcaaactgc cggaaggcta ccctgtttac accaaccgtg gtgcaagcgg
     1501 tattgatggc ttaatcgcaa caatggcagg cattgcaaaa ggtagcgacc gcccgactgt
     1561 cggtgtggta ggtgatattt ccgcattaca cgatcttaac tcaattgcat tgctcaccaa
     1621 aattaaccag ccgaccattt tatttgtggt gaataacagc ggtggtgcgt tgtttgatat
     1681 gttgcctgtt gatagcaaag cgaaagatca atattaccgc cttgctcaca actttgaatt
     1741 tgctcaagtc gccacaatgt tcgggcttga atatatccgc ccgtttactt gggcagatct
     1801 aaaaaccaaa ctcaaacacg cctatgctcg taaaggtgtt accattgtgg aaatcaaagt
     1861 aaatgaacac gacggcagca atatgtataa atcattgcta aaacaaattt cacaggcgga
     1921 aattgcctaa tcacaactgc ccctcgccaa tcctgcgagg ggtaaaaatg tatcgactat
     1981 gctttcctat caatggcacg ctcaacaagg cacacccgtg gttttccttc acggcttgct
     2041 cggctcacaa caagactggc aagctgttct ccaacatttg caaaattttc cgcaaattcg
     2101 accgcttacc attgaccttc cttttcacgg aaatagtaag cacattacct gtgccgattt
     2161 tgccaacctg cgacaacaac tacacgccac ccttgaaagc ctaatcggct cacgaccttt
     2221 ctatttagtc ggctactcac tcggtggacg agcggcactc gattatgtgt taaatatgga
     2281 gaatccgaat ctgcagggcg tggtgttaga aggggcgaat atcggcttaa gcacagaaaa
     2341 cgaccgccag attcgccggc aaaatgaccg ccattgggca aaccgtttcc gtcaagaacc
     2401 catcgaacaa gtgcttgaag attggtacaa acagcctgtt tttgcggatt taagcgatac
     2461 ggaaagagaa tgttatattg atagcagaaa gcacaatcaa ggagagcaaa ttgctcaaat
     2521 gctggaagcc accagcctcg ccaaacagcc tgactacacc gaaaaactca agcagacgga
     2581 taagaatatt gtctttttta tcggtgaaaa ggatcagaaa tttcgcaaaa tggcatcaag
     2641 ccaccaacta ccaacacaac tgattgctaa tgcagggcat aacgctcatc gggctaatgc
     2701 taaaaatttt gtggagaaat tggggttatt gatactccac tccgacagcg acctacggtc
     2761 gcaatcggtt aagcataacg gtgcagctct gctgcacaaa agccccagtg gggcttaatc
     2821 agccgtaggc taaatataac ctagtacggc tcagccgtgc taggtgttag ggctccccct
     2881 gcaaccgttg caataagcga tccatcgccc gataaccaag tgcttccgct aaatgcagtt
     2941 gttgaatatt cgcctcgccg gctaaatcag caatagtccg agaaactttc aaaatacggt
     3001 ggtaggctcg taccgataaa ccgagctttg tcaatgcagt ttctaaaaat agggcatctt
     3061 gtgccgataa ttggcaatct cgctcaattt ctcgggtggt gagttgagaa ttgattttac
     3121 ctgctcgctc aaattgcatt tttctggcta aaaacactcg cttgcgaacc tgctcggtgg
     3181 tctctcctcg attctccgtc ccactttgca atgctccttg tggcaaaagt ggcacttcta
     3241 tagagagatc gaaacggtct aagaaaggtc cggaaaggcg gtttaaatac cgcattacct
     3301 gttggggcga agtgcggtta tgcgtgcctt gataatgccc tgtcgggctt gggttcatcg
     3361 ctgcaattaa ttgaaagcgt gccggaaatt gtactttagc gttggctcgg gaaatcacaa
     3421 tttcgcctgc ctccaacggc tgacgtaacg catcaagcac tttacgttca aattcaggca
     3481 attcatctaa gaacagcaca ccgttatggg caagtgaaat ttcccccggt ttggggatcg
     3541 agccactgta aaaactagaa ataaatgtca taaaaactag aaatagctgt cagattattt
     3601 agaaaacaag aaataggtgt caaattatta tgagaaaaac acatagtttt caacaggtta
     3661 gaaaaattaa acccacttgg atgagtgtat cggggcatat tccatttaga aacggagtca
     3721 gtattcccta tgaatcgact ttagagcgtg attttttgat gtatttcact tatctacctt
     3781 cagtagatga agtcgtctct caaccgacta ccctaccttt cgtcaagaat gggatcactt
     3841 atacctatac accagatttc ttcttgtcat ttacagacgg tcgaaagccg atgttaatcg
     3901 aggtcaaacc gaaagcaaaa tggcagaagc actggaaaga atggaaagaa aaatggaaag
     3961 ctgcaatacg tttttgccaa gaaaacggtt atgtattcca tgtgtatgat gaagatcgga
     4021 ttcgacatct agcgcttttc aatctcaact atgttcagcg ctataagcga atacaacatg
     4081 aacaagaaga tatagatgct attctagccc aagtaaagct gatgggaaat accactattg
     4141 actatttact ctctcgattt tttgcaggtt ctctatatcg catgaaaggc ctacaaatca
     4201 tctatcactt actggcaacg aaacaactac attgcaattg gtttctacca cttaatgaat
     4261 ttaccgaggt atgggggaat aatgatgagt aactctggat ttacagaaaa gcgctatcat
     4321 caccgattag atcggggacg tattattttg caaaaaggta atatttacct aaatagagaa
     4381 gatggagaac agtatgaatt ggttgattat atggatgaac cctcccaact gctcgtacga
     4441 aatctcaaca ctcgtacaac caaagtcgtc agtattcatc agcttgaaaa tttcaaaatg
     4501 aacgagcgaa cggatctttc tgtggatgta accgctatta gtaatgaata ttgggagaaa
     4561 gcccaacaaa aatatgaggc aattaaaccg ttattaggga tggatcaaca tcggccttac
     4621 gcagttaagg ctcgtgcaga agatgttggg gtgaaccctc gtacattata ccgttggtta
     4681 caagcctata attccatagg atctatcgca ggtttagtcg atcaaaaacg tggatggcaa
     4741 caaggaaatt cccgtttaac gccagagcaa gacaagctga tcgtgcaggt aatcaatgag
     4801 ttttacctac ataaacaacg cccaactact gagcaaacta ttagagaaat tcgccgccga
     4861 tgcaaaattg aaaaagtgga aagcccaagc aaagaaacca tccgtatgcg cattttgcat
     4921 atttcagagg aagagcgatt acggaaacgc gggcaacgag aaaaggcacg caacaaattt
     4981 aagccgaagc caaatagctt tcctgatgcg gattatccat tgagtgtggt acaaattgac
     5041 catacaccag ttgacctaat tattgtggat agtaagtatc gtaaaccgat tggccgaccg
     5101 tttttgacgg ttgcgataga tatatacagc agaatgattg ttggttatta cctttcactt
     5161 gatgcgcctt ctgtaacttc ggtggcgatg tgtattgcac gtggtatttt gccgaaagaa
     5221 cgcctactgc ttgatttagg tttgcaaggc tcagaatgga atgcttttgg ctacccagtg
     5281 aaagtgcatg tggataatgg cccagatttt caggctttgg atttatctaa atcttgttct
     5341 gcacacggaa tccatcttga atttagaccg atggggcgac ctgaatatgg cggacatatt
     5401 gagcgtgtta tcggtacatt tatgaaagaa gttcacagtt tagcaggaac aacattctcc
     5461 aacatcaaag agcgtgactc ttacgattcg gaaaaagagg ccattatgac tctcgatgag
     5521 tttgaaaaat ggttggtaca ttacattgtg aatgtttacc acaaacgtgt gcattctgct
     5581 ttaggcattt ctcctgaaca aaaatggaag attggtattt ttggagatga aaatgaagtg
     5641 ggatgtggtt atccgcaact tcctgttgat gaacaaacac tactacttga tttcttgcca
     5701 agtatcactc gtaccattca gcataatggt gtaacaattg acggacttcg ttattacgat
     5761 gttgcgctaa atatgtatat cagtgattca gatgaaagcg gtaaatctaa ggaatttctg
     5821 tttcgccgag acccgcgaaa tatcagcaaa atttggtttt atgatccgaa attaaaacgt
     5881 tacttcccaa ttccatttgc aaatcaggca atgcccgaaa tgagcatttg ggaatataga
     5941 gaggttcgta gccgaattgc gaataaaggt gataaatata tcaacgagca acaagtttta
     6001 gacggtttaa ccgagatgcg tgaaatggtt gctgaatcgg ctcaacggac gaaaaaagca
     6061 cgccgtcagg ctgaacgaca aaaaatgcac aaagcaagta agccaattat tgaaacaaaa
     6121 gtggaaacta aggctgttgt accagtcgta gtaacatcga atttgcttgc tttagatgat
     6181 gagagcttat cttttggtga ggtggactaa tgcaatacga acatgttcat gaaaaattcc
     6241 gccatcttgt gacagcggac aatcaggaga ggattgcgtt cttggacgag ccaagatggt
     6301 taggttatgg tgtcgccaaa gacattatgg ataatttggt ttctttaatg aataaaccaa
     6361 aacgcccacg aatgttgaat ttgttgattg tcggcgattc caataatgga aaaaccacac
     6421 tgatccgccg cttcttcgac ttgtacggtc aggcgtatat cgacagtgat tctaatgcga
     6481 tttaccctat tcttcttgcc gaagccccac caagtgcgaa tgaaaaagaa ttgtacatct
     6541 cattattaga gcggttctac gtaccatata agccgacaga tacgatagcc aaacttcgtt
     6601 atcagactat ccatttgttc cgagaatttc gtgtcaaaat gttggttatt gacgagtttc
     6661 attctctgtt ggttggtaca ccacgcttac aacgacaggt gatgaacgca attaagatgc
     6721 tttgtaacga gctacaaatt ccaattgtcg gtgttggtac tcgtgatgca attcgggtat
     6781 tacatacgga tcgacaacat gccagtcgtt ttgatgttgc ggaattgcca atatggaaac
     6841 tagataagga atttcaaaaa ctcctatttc aattccaagg gattttacct ttgagggaga
     6901 gttcaaatct gcaatctcca gaacttgcta cgaagatcca caccatttca ggtgggaact
     6961 tagggaacgt gcatcgctta ctaacagctt gtgcagttca agccattaca agtggcacgg
     7021 aaaaaatcac cttagacatc attgagaaaa attcatgggt acaaccaaca aacggctatc
     7081 gcaaaataat cggataaaaa aaggtgttat tcatacccct atttattcaa atgaaagtat
     7141 tagctcgtgg ttaattcgtg catcctttga ttgtggtaca gatccactga cttttacagg
     7201 gttttattgg gaaaaacatc ggttgtggac attagattta gatcgtggct tggaaaatat
     7261 tgagccaact atctatgatg atgtacaggc attatcgggt aaaatccaac tttcagaata
     7321 ttccttgttt cgcaggcttt accctataaa tgcagatgaa accttagcta aaggtcaagt
     7381 aagatgggtg attccacgtt cggcaaggaa tagaacccat cacattggtc aacaatattg
     7441 tcctttgtgc ttggatgagt cgccacattt acgcaatgat tggcggttag cgtggaattt
     7501 tggttgtctc aagcataata tgatgttggc gaacagatgt ttttgttgtg gtacattgta
     7561 tcaaccccat ttactatcag cggaaaagag gcatttgaat cattgtcatc aatgtggtgg
     7621 gaaactggaa caaggcacaa tggaaatgag tctagctgaa aagctgacat tgcaaggtat
     7681 taatcaggta ctcgaaaaag attcaggcat ctgttttgga tacaaggtgt cgggtaaggt
     7741 gtggtttgat atgctccgct actgcatcaa cttattgaga cgtgcatcag acagaccaaa
     7801 tcatgcctta gcaaaatttg tagttaatct acagattgat gttgaaaata tatgtagccc
     7861 caaaacagga ctttcttttg aacaacttcc gctaggtgaa cgtacaaatt tacttgtgaa
     7921 tgcctatcat attttgggaa tggaagcaga ttctattcgt agtgcaattt atttgtgtgg
     7981 cggaacacaa aaaaccttta tgtttgaaaa atatcctgat ttttggcaag aatttatggc
     8041 actagcaccc gcaggcccaa atagaacacg aaaacgcacc aagccccaaa atgagtctat
     8101 cacagcaatt aatcgccgtt gggagcgttt gaaacgcaaa ctacacttaa ataacgaatg
     8161 aaaattaatg taataaaacc acaggaagaa ccttgctccg cttgtggcaa aatttctcgc
     8221 atttggcgca gatataatgg cgaaggctac tgtgccaatt gctatgctaa gtggtttccg
     8281 aaaaaagagt gcagctgttg ccatcaacca aagcgtatct atttgagttc aacagtatgt
     8341 tgggattgcg aaaaacagac tgactgtgta cgttgcggta aggctgcggg tacattcaaa
     8401 attggtaaaa ttacccgtta tggtgcagtt tgtaatgtgt gttcacgtta ttttcgtgaa
     8461 gaacgagaat gttttgagtg tggtcaacta tctagaacta tgcttcgagc atcagagtca
     8521 ggtcatagcg agctactctg cttgaagtgt tttcaaaaat atcggtttgc gacttgtaaa
     8581 aactgtcgcc gttatcgcaa agttcatgac cgtgataatc agctttgtcg aaaatgtagt
     8641 gagcaacgaa cttcacaatg cccgaagtgc aaacaggata tgcctgcggg atatggtaat
     8701 atttgtgcag attgttctag gcgaactcta ctgttcaacc ttattcgaat gaatgtgcat
     8761 ttattccgcc acaaaaaagt gaaaagagca tataaaaagt tcattttttg gtatctcgca
     8821 aagtgtggcg tgagtgttgt gctgaaaaaa tcagacgacc acgtcctctt ttttatgcgt
     8881 tgcgatgaaa attggggcaa cattccagac taccgtgagt tggttacatt ctttaaaccc
     8941 aatggattac ggacgcattt gactgtgttg cgttggttgc ttgataccaa tcaagtcaaa
     9001 gtagatgaga gcttaaaaga ggaaatggcg gggttggaac gtattcaatc cctatttaac
     9061 aaattaagta actctgtacc ttgtattgca aactactaca cgcagttaca acataaatat
     9121 gaggcgggca aaacatcact gaaatctgtt cgattagctt tacaacctgc gattgatttc
     9181 atcagttcag aatctgtctc gttactgccg actcaagtac aactgaatag ctatcttgtg
     9241 gcaaaaacgg gacagattgc tgctattaca ggctttataa accacctgaa ccgagaatat
     9301 cattgtgaat tagaaattga ccgctccctc attcaaaaga tgaaagaaaa gcagttgaag
     9361 cagcaagcaa aacagcgatt agcgatactc tacaagcaag aaaaactaag tatcaaagag
     9421 caaaatgagc tactctcagt cgtattactg aatttgcaca acatttggat aaaatcaccg
     9481 aaaaaattaa gtatttcaga gatagacggt atagcctact atgttgataa tgagaaaaaa
     9541 tactttatac caaaagacat tcacatacgc ctgatggaat aagctgtcgt caatttttat
     9601 ttttgcgatc tgtgtcgaga aaataatatt tatgaatcga cagatgaaat aatattgata
     9661 aagtctcttt gtgtgttcaa caaacaggag ataaatatga cattaaaggc tcaatttcgt
     9721 gaatggctta aaaaagagca agaacatgat gaaatgatag ggttcgccca tatcccttgc
     9781 attttatcta aagtggatag caaactggcg attgttagcg gaaatgctta tgagaagaaa
     9841 tatctcagat attggatcaa gtgttttagg ttcgatagaa atatcagcaa gtatattaaa
     9901 taggttaaat atctagct
//
LOCUS       DANLXB010000095         9736 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLXB010000095 DANLXB010000000
VERSION     DANLXB010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9736
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            65..745
                     /locus_tag="PXD41_001580"
     CDS             65..745
                     /locus_tag="PXD41_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL6289100.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            757..2025
                     /locus_tag="PXD41_001581"
     CDS             757..2025
                     /locus_tag="PXD41_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL6289101.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2080..2691
                     /locus_tag="PXD41_001582"
     CDS             2080..2691
                     /locus_tag="PXD41_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL6289102.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2745..4043)
                     /gene="aroA"
                     /locus_tag="PXD41_001583"
     CDS             complement(2745..4043)
                     /gene="aroA"
                     /locus_tag="PXD41_001583"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL6289103.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4089..5183)
                     /locus_tag="PXD41_001584"
     CDS             complement(4089..5183)
                     /locus_tag="PXD41_001584"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6289104.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            5455..6774
                     /locus_tag="PXD41_001585"
     CDS             5455..6774
                     /locus_tag="PXD41_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL6289105.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(6944..8887)
                     /gene="ftsH"
                     /locus_tag="PXD41_001586"
     CDS             complement(6944..8887)
                     /gene="ftsH"
                     /locus_tag="PXD41_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL6289106.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(9008..9634)
                     /gene="rlmE"
                     /locus_tag="PXD41_001587"
     CDS             complement(9008..9634)
                     /gene="rlmE"
                     /locus_tag="PXD41_001587"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL6289107.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2726 a         2084 c         1896 g         3030 t
ORIGIN      
        1 agtaaaatac gccggacttt acagtaagaa gtcattgtca atattatcac tatggagata
       61 ttttatggca ttgaataaca ttttaggttt attcgcccag tccccactta aaccgttaca
      121 aaaacactca aataaagtga ctgaatgtag cgagttatta gaatcttttt ttgaagcgac
      181 ttttgaacat gattgggaaa aagcagctga agtgcgcggt aaaattgttg atttagaacg
      241 ccgcgcagat gcccttaaac gtgaaatccg cttaaaactg cctcgtggtt tatttatgcc
      301 agttgaacgc ggtgatttat tagaactagt cacacaatta gataagttag caaactattc
      361 aagagatatt tccggtcgca ttattggtcg taaattaatc attcctaccg aaatgcaacc
      421 acttttcaaa aaattccttt ctcgtagtat tgatgctagc cgtcaggtac gcaaagtttt
      481 ggatgaaatg gatcagttat tagaaactgg ttttagaggg cgagagcttg atttcgtcaa
      541 taaaatgatt cttgaacttg accaaattga agatgatacc gaccaatatc aaattacatt
      601 acgtcataca cttcttgagt tagaaaaaaa cctgaaccct attgatgtga tgtttttata
      661 caaatgtatt gaaagaatca gcgttctagc tgaccaagcc cagcgaattg gttctcgtat
      721 tgaacttatg ctggcgaagt cataggagaa aattaaatgg aattactcaa tcaatatggc
      781 tcaatactgg tgattattac tgctattgta gggtttatga tggctttcgg tattggtgct
      841 aatgatgttt caaatgccat gggaacatcc gtcggctctg gaacaattac gattaaacaa
      901 gctattttaa ttgctatggt atttgaattt gctggtgctt atctggcagg cggtgaagtc
      961 gcagatacaa ttaaaagtgg cattattgat ccggcacaat tcgccaatag ccctgatatc
     1021 ctggtacttg gaatgatggc atctctctgt gctgccggaa tgtggctaat tattgcaact
     1081 aaaatgggtt ggccggtttc agcaactcac acaatcattg gtgccgttat tggttttgca
     1141 ttaatcacta ttggttcaga tgcaattcaa tgggatgcat taggtggaat tgttgggagt
     1201 tggtttgtga cccctattct tgcggggatc gtagcatatt cgatctttat taactcacaa
     1261 aaactgatct ttaaccgctc aaacccattc aaacaagcga aaaagtatgg cccgatgtac
     1321 atgggaatta ctatttttat tttagttatt gtaaccgtgt caaaaggctt aaagcacgta
     1381 ggattacatc tagatacagc tgaaacattg ggaatttcat tcgcgcttgc cttacttgct
     1441 tttatcattg gatattttta tttccgcagt aaaagctttg caatgaaagc tcgtgcagaa
     1501 gagaaaggct tcgctggcgt tgagaaaatt tttagtattt taatgcttat tacggcctgt
     1561 gctatggctt ttgctcatgg ctctaatgat gttgctaatg ctattgggcc tctagctgct
     1621 gttgaatcta ttgtaagaag tggtggaatg attgaaggta aaacgacttt agccccttgg
     1681 attctcccac taggcgcctt aggtatgatg attggtttag ctattatggg caagaatgta
     1741 atggctacag taggtactgg tattaccgac cttactccaa gccgtggctt tgctgctcaa
     1801 tttgcctgcg ccgtcacggt tgtcattgca tcaggtactg gtttaccaat atcaacaacc
     1861 caaacgcttg taggagcagt attaggtgtg ggattcgccc gtggtattgc tgcacttaac
     1921 ttaggcgtta ttcgtaatat tgttatatca tgggtaatta ccttgcctgt aggtgctgtg
     1981 ctttcaatta ttatctatta tattttaagc gctattttct attaattttt caaaaagaat
     2041 acaggcaact gtattcttcc tagctttaga ggaatatata tgaagaaatt atcatcagct
     2101 cttctgtctt gttttttact cggcctatct agccctgctt taacggcaga cacttacatt
     2161 actgaaaatc tgagtacatt tatgcgcaaa ggtgctggtg atcaattccg catttcaggc
     2221 gctattcaag caggtgaaaa agtcacagta ttagatcgta aagagcgcta cagtctgatt
     2281 cgagatagtc gtaaccgtga aggttgggta cttaattcag acttaagcga tactgctagt
     2341 ccaaaagagc tgattcctca attaaaacaa caggttcaag atttaaccaa tcgcctgagc
     2401 aaaatcgata ccgaatggca acaacgtacc gcagaaatgc aacgtagaac gcaagattca
     2461 gtgcagaaaa gcagtgattt ggttgaggaa aatgcacaac taaaacgtga actggaaatc
     2521 ctgaaaaaca aaaatcgtga tttagaaaca atgcacgatt ccgagaaacg tgaaatcgtg
     2581 attcagtggt tcatctatgg tggtgctgtg ttaggcgcag gtttactact tgggttactc
     2641 gtgcctttcc tgatccctcg ccgcagacgt aacaacagcg gttgggctta gtctgccaca
     2701 ataaaacgta aaaaggattc agttttctga atcctttttt acttttatct gaccgataat
     2761 ttttccaact ccctaaagta agtcgggaac gttttagcgg tacaatttgg atctaagatc
     2821 gtcacttctg tattcgataa cgcaattaat gaaaaacaca ttgccatacg gtgatcgtta
     2881 taggtttcaa tttcagcgtg ctggaagttt tctaacgcaa gcggttgaat ccgaataaaa
     2941 tcttcccctt cttctacctc tgccccgact ttacgcaatt cggttgccat tgctgtcaag
     3001 cggtcggttt cttttacccg ccagttataa atattgcgga taactgtttc tccttcggca
     3061 aataaagcgg ttgttgcaat cgtcattgcc gcatcaggaa tatgattcat atccatatct
     3121 acgcctttta gcggggattg ctcggcttga ataaaatcct ctccccaagt gatttttgcc
     3181 cccatttttt ccaacacatc ggcaaacaag cggtcgcctt ggatcgattt tttaccaatg
     3241 cccgttactt ttaccttgcc tttaatcgca ccggaggcta agaaataaga ggcagaagag
     3301 gcatctccct ccaccaaata attaccttgt ggagcaacat agccttgttt acctttaact
     3361 aaaaaggttt tgtaatctcg attttcaacc gtaataccaa aatcgttcat catcgaaagg
     3421 gtaatatcaa tataaggttt tgataccaga tcaccgataa tctcaatttc catatcgcct
     3481 tccgctaatg gggcagacat cagcaatgcg gttagaaatt ggctggaaat cgagccgtca
     3541 atttgcactt ttccgccctg caaaccgcta ttgctaattg ccaacggtgg atagccttca
     3601 ttttctaaat actgtacctc tgcccctact tggcgtaaag catcgactaa gtgtttaatc
     3661 gggcgttctt tcattcttgg ttcaccggta agaatgattt gggatttttc ctcacctttt
     3721 aaacacaatg ctgctgcaag tggtcgcatt gccgtgcctg cattgccgag aaacagtgat
     3781 aagccgtttt gaaccttaaa agctccacca atcccttcaa ctacacagac ggttttatcg
     3841 tccgatagct catatttcac gcctaacgct tttaaggcat tgagcatatg tcgaatatca
     3901 tcactatcta ataaattggt cacttgagtc gtaccggtgg ctaaggcggc taataataag
     3961 gctcggttag acaggctttt agaaccaggt aaattgatct cgccttctac tcgggaaatc
     4021 ggggttaaag ttagtttttc catttttctc tttaaatttg taaaattttc ataaaaggta
     4081 accgcttgtt aagctaacac tttcaataag gcagtaaaaa atctctcgtt ttcttgcggt
     4141 aaaccgatac taatgcgtaa atgattcggc attccataac ctgctatcga gcgaacaatc
     4201 acgccttcac gcagtaatgc ctcataaatc ggagcggcag gacgtttgaa atcaatagta
     4261 ataaaattgc ccttagaagg gatatattcc aagccgtttg cttggcagaa agcctcatag
     4321 cgagccattt ccaagcggtt attttctgcc acttttttga caaattcatc atcattcatt
     4381 accgcaatcg ctgaagctaa ggcaagacta ttgcagttaa acggctggcg aacacgattt
     4441 aataaatccg caatttcagg gtttgaaacc gcataaccaa tccgaagccc ggctaagccg
     4501 taagccttag agagtgaacg tgacacaatt aaattcgggt attttgccaa taagccaaac
     4561 gaatccaccc gttcttgagg cgcagtaaac tcggtataag cttcgtccag caccacgatt
     4621 acatttgccg gcactttagc taaaaagccc tcaatttccg cttgggttaa aaaattaccg
     4681 gtcggattat tcgggttggc aataaaaatt aatttagttt tttcggtaat tgcagccaaa
     4741 aaggcatcta aattgtgtcc ccaattttta gccagaattt cacgggcaac ggcattaatc
     4801 gctttcgtca ccaacggata cacaataaac gcatactgag aatagataat ttcatcttgc
     4861 tcaccggcga aggtgtgggc aaacagctct aataaatcgt ttgagccatt gcctaaggtg
     4921 atttgattgg cttgtacgcc aaatttttgg gcaatagtgg tttttaattc aaagccgttt
     4981 gaatccggat agcgggttaa atcgtcaagc tgattcagaa tcgccttttt tgcactttca
     5041 ggaaaaccaa atgggttttc gttcgaggct aatttaatga tattttgaat ccctaattca
     5101 cgctctagct cctcaatcgg ctttcctgct tggtaaggcg aaagggattt cacgccctca
     5161 tttgcgatgt tgataaattg cataataacc tctgattatt cttataaaat ataagttcgg
     5221 attgtagtaa agaatgattg cctttaccag taaatttttt gttacaactg gaaagaaatt
     5281 ggtacaaaca ttcggattag ctttgcaaaa agcgtaaaaa atcttaccgc ttgtcattta
     5341 tcagttaggg aaaataaaaa atcactctct tatataaaaa caattacgca aacgattgct
     5401 tattaaaaaa acttcagtat aatgccgaca ttttttaact ctcgaggaat cactatgaac
     5461 catttacttt attctgtcga agacaaaccg cctttcgggc tgagcttatt gcttgcctca
     5521 caacatttat tagccgcttt aggtggcatt atcgctgtac ctttagtgct agggaatgta
     5581 ctcaaactct ctactgcgga tactataatc ttagttaatg ctgcactttt aatttcaggc
     5641 atcgtcacta ttattcaatg tcgaggtatt ggcccaatcg ggattagact accgagtgta
     5701 atgggaacta gctttacgtt tgttgcagca gcattagcga ttggtttcag tgaaagtggc
     5761 attgccggca ttatgggagc ctctttagtt ggctctctag tgatgattat cggcagtttt
     5821 tttatgcctt atatccgtaa gctttttcca cccgtggtaa caggtactgt cataatgatg
     5881 attggcctaa gtttaattcc tgttgcagta gactggtttg ctggtggtca gcgtactgat
     5941 ccacactatg caaccccaga aaatcttata atggctagtt ttgtattaat tattgtcgtt
     6001 gctttagtac aatgggggaa aggtattttt tcagctgctg ctattgtgat tggtatgatg
     6061 ataggttata tcgtttcgct agctctgggt tgggtaagtt ttaatggcgt gaaagaagca
     6121 caactttttg cgttaccaca acctctacat tttggcttag aatttccaat ctccggtatc
     6181 atcggaatgt caattgctta tttagttacc attgtagaat ctagcggaaa tttcttagca
     6241 ctaggcaatg caactaaaac tgaaattacc ggaaaacact tacgtggagg tgtattatgt
     6301 gatggtttag gctcagcatt tgcggcaatt atgtccacaa ctcccttttc ttctttctca
     6361 caaaatattg gggtcatttc attaaccggt gtagccagtc gctatgttgt agcatttaca
     6421 ggcgcattac ttgtactagc cggtttattt cctgtatttg gagcattaat cgtgtctatc
     6481 ccgttacctg tgcttggcgg tgcaggctta atgatgtttg ccatgattat cgcagccggt
     6541 atccaaatgt tagataatat tcaacgtagc aaacgaaacg gtttaattat tgctatctct
     6601 atcggttgtg ggctggccgt aacaactcga cctgagctat tggataagct tccacacttc
     6661 tttaaagaag tttttggctc aggtattacg gtcggctcct tattagcact tattttgaat
     6721 ttagttttac ctgaagataa aataaccaag aaagaaaata agagtgatga ataaatcacc
     6781 ctaaaaaaac aaggacagct cacaatacaa ctttgatgct gtcctttatt cccatagaga
     6841 gcatatttaa atttaggtta ataaaaaaat ctgcactcta tattggtgtt tacctttaga
     6901 gtacagattt cttcttattc taactttcta gcaaacaatt agattaatgt tccgctttgg
     6961 tatcggctaa cgaatcccca atgttattat ctttatttgg attatcctct aaagttgaac
     7021 ttacatccgc tgcctgttca ccacttggtg gagtggcgtt atcgtcttta gttggggtat
     7081 ctgtccaacc tgatggttca cccaccggac ggcgtgccat taaatcatca atttgcttgc
     7141 tgtctaaggt ttcgtatttc aataaggcat ctttcattgc gtgtaagatg tccatatttt
     7201 cttccaaagt ttgcttcgct cgttgatagt tgcggtcaat gatcttacgc atttccacat
     7261 caatcaattt ttgcgactct tccgatacgc ccttaattgc acccattcca tcttcatttt
     7321 gatagaaaat cgggcctaat tcttttgaga agccccattg agtaaccatt gctcgtgcaa
     7381 tttgggttgc tcgatgaata tcagaggaag cccctgtggt aattttatct tcaccaaaaa
     7441 tcaagccctc agcaattcgc cctgcaaata gggtggaaag ttggctttcc aatttggtaa
     7501 atgtttcgct tacacggtca ccttccggta agaattgagc aaaacctaac gcctgaccac
     7561 gaggcacaat tgtcacttta ttcagcggat cgtgttccgg cattaaatag ccaacaataa
     7621 cgtgtccagc ttcgtggtaa gcagtattga tgatctcttt ttccgtcatt gtatttgaac
     7681 ggcgttccgg ccccatattg attttgtcac gggcttcttc gaaatcttcc atcattacca
     7741 cacgtttatt cttacgggca gcaaataagg cagcttcgtt caccaagttt gctaattgag
     7801 caccagagta acccggcgta ccacgagcaa tttgcatcgg gtcaactccc tctgcaagcg
     7861 gtactttttt caagtgaact ttcaaaattt gctcacgccc tttcacgttc ggcaaatcga
     7921 ccgtgacttg gcggtcgaaa cgccccggac gagttaaggc atcatctaac acatcggcac
     7981 ggttggttgc agcgatgata atcacacctt cagagccttc aaagccgtcc atctcaacta
     8041 acatttggtt gagggtttgt tcacgctcat cgtgtccacc gctgaaacct gcaccaccac
     8101 gtttacgccc taccgcatca atttcatcaa taaaaataat acaaggggca tttttcttgg
     8161 cttggtcgaa taaatcacgc acccgtgaag cacccacacc tacaaacatt tccacgaagt
     8221 cggaacctgc cattgtaaag aatggcactc gtgcttcacc tgcaatcgct ttcgccaata
     8281 aggttttacc cgtacccgga gggcctacca tcaagatccc ttttggaatg cgcccaccta
     8341 atttttgaaa tttagttggg tcacgcaaaa actcaacaac ttcgcctact tcttctttgg
     8401 cttcatcaca gccggctaca tcagaaaatc tggtcttaac ttcgtctgcg gtcaacattt
     8461 tggctttatt tttcccaaag cccattgcac cacgtcctcc gccaccttgc atttgtcgca
     8521 tataaaacac atagaaaccg attaacagca acattgggaa ccaagaaatc aaaatttgcg
     8581 agagcaagcc acgacgctca gcaggctgac cggtaatcac tgcattggtt tttgctaaat
     8641 ctgccattaa gtactcatca tacatcggca ttacggtttg gtaggttgca ccatcatttt
     8701 tcgtcaccaa aatggtgtca tcattctgtt tgaaatcgac cccttttaaa cgattttctt
     8761 taatatcgct taaaaaagtc gaatatggca ctgtatttga gctaccactg aaattagaat
     8821 taaaaccttc ataggctgtc atcatcacaa tggcaatcac cacccaaagt aaaatatttt
     8881 taaccatatc gttcaaggtt aatcccctat ctgctgaata aaaaactgtt caagattact
     8941 ataaaagcgg tcgaattttc caattttttt gcaaaatgtt aataaaaaat gaccgcttgc
     9001 ttgttttcta gcctttataa cctgtcgcta caatataaac ttctcgagac cgatctcgag
     9061 acgcctccgg ttttctgact tttaccacac taaagagcga gcggatttct cgaaggtatt
     9121 catcaaatcc ttcgccttgg aataccttaa ccacaaaact gcctttggtt gctaatactt
     9181 ggcgacacat atccaatgcc aattccacta aatacattgc acgaggaata tcaaccgacg
     9241 gcataccgct gaaattggga gccatatccg acatcaccac attcactttg tcttcgccta
     9301 ctcgctcaag taacgcattc agcaccgatt cttcacggaa gtcgccttgt aagaaatcca
     9361 cgcctacaat cgggttcata tctaaaatat cacaagcgat tactctgccc ttactgccga
     9421 tttgcgtcac cacatattgc gaccaaccgc ccggtgcggc accgagatcc accaccgtca
     9481 ttcccggttt gaataaacgg tcggtttgtt gaatttcatc taacttaaaa tacgcccgtg
     9541 aacgcaattt ttgtttatgt gctttttgca caaattgatc tttaaaatgt tctgcaagcc
     9601 aacgtgatga actcgcactt cgttttctac ccatttgttc ttctatctta attaattcaa
     9661 cgatttataa taagggttaa attagcaaat tcaagagatg ttctaaaatt tagctcggct
     9721 tattatgctt aattaa
//
LOCUS       DANLXB010000096         9541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLXB010000096 DANLXB010000000
VERSION     DANLXB010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            38..1516
                     /gene="fruB"
                     /locus_tag="PXD41_001588"
     CDS             38..1516
                     /gene="fruB"
                     /locus_tag="PXD41_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL6289108.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            1530..2474
                     /gene="fruK"
                     /locus_tag="PXD41_001589"
     CDS             1530..2474
                     /gene="fruK"
                     /locus_tag="PXD41_001589"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL6289109.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            2500..4164
                     /locus_tag="PXD41_001590"
     CDS             2500..4164
                     /locus_tag="PXD41_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6289110.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            4331..4849
                     /locus_tag="PXD41_001591"
     CDS             4331..4849
                     /locus_tag="PXD41_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL6289111.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5002..5865)
                     /gene="rarD"
                     /locus_tag="PXD41_001592"
     CDS             complement(5002..5865)
                     /gene="rarD"
                     /locus_tag="PXD41_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6289112.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            6043..6627
                     /locus_tag="PXD41_001593"
     CDS             6043..6627
                     /locus_tag="PXD41_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL6289113.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            6709..7167
                     /locus_tag="PXD41_001594"
     CDS             6709..7167
                     /locus_tag="PXD41_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6289114.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            7164..8021
                     /locus_tag="PXD41_001595"
     CDS             7164..8021
                     /locus_tag="PXD41_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6289115.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(8136..8615)
                     /gene="ispF"
                     /locus_tag="PXD41_001596"
     CDS             complement(8136..8615)
                     /gene="ispF"
                     /locus_tag="PXD41_001596"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL6289116.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(8617..9300)
                     /gene="ispD"
                     /locus_tag="PXD41_001597"
     CDS             complement(8617..9300)
                     /gene="ispD"
                     /locus_tag="PXD41_001597"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL6289117.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(9318..>9541)
                     /locus_tag="PXD41_001598"
     CDS             complement(9318..>9541)
                     /locus_tag="PXD41_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HDL6289118.1"
                     /translation="WFGKNGWSDYQEVQEEIALLKVENTKLTSRNKLIEAEIYDLKNG
                     VDALEERARLEREMVKENEMFYRIVPKNK"
BASE COUNT         2849 a         2070 c         2002 g         2620 t
ORIGIN      
        1 acagtttaaa aatcaacttt aaatccaagg agctaaaatg cttaatttat cggcaaaaaa
       61 catccgttta aatggttcag caagcaacaa agaagaagtt atccgttttg ttgccgccga
      121 attagtcgcc aagggcaatg tagcagccgg ctatgaagtc ggtatgctta atcgtgaaac
      181 ccaaacctct acttttttag gtaacggaat tgctattccc cacggcacgc ttgatacccg
      241 tgatttagtc aaagaaaccg gcgtgcaaat tatccaactt ccgcaaggcg tggaatgggg
      301 cgaaggcaac actgcttatg tagttatcgg gattgcggct aaatcggacg aacacttaac
      361 cttactccgt caactcacca ctgtattaag tgatgaagag gctgctgcca cattagcgaa
      421 aacgcaaaat ttagatgaat ttattgccgt attaagcggt aagaaaaacc ttcctgcctt
      481 atctcaagag ctgatttctc tgaatatcga atcttcaagc cctatcactt tatcagccat
      541 taacgccgca aaactacaag agcaaggcta tgtttcccaa gcattcatca gcgatgtggt
      601 tgccaacaaa gcgttacatt taggcaataa tctatttgtg gtggattccg ccaaaggcaa
      661 ccaagctaac ggtatcgcta ttgcccgtaa tacgcaaggt caaaccctac taactgtggc
      721 agaaaccgac aatgctctac agccactatt aactcaatta ttaaaaccag aagtaagaag
      781 ccagtttgct catttctctg cggagcaaat gcttggttta ttaaaaggcg aaagcgtagc
      841 ttcaacccct gtaaccaatg tcgaagcgag tggcaaccaa gtggttggca cattcaccat
      901 tcgtaacgac aacggcttac acgcccgccc ggctgcggtg ttagtacaaa cggtgaaacc
      961 gttctcctca aaaatcagcg ttgaaaattt agaccgcaac actgcaccgg caagtgcgaa
     1021 aagtgcaatg aaagtagtag cactaggggc aagccaaggg catcgtttac gctttgtggc
     1081 agagggagaa gacgcccaac aagcgattga ggcattacaa caagcaatta ttaacggctt
     1141 aggcgaaagt gtttcattcg taccggcggt ggcagatacg attgaaagca ttgctgtttc
     1201 agcaattcct gcggaagaaa ctgcgactgc tgtcgatgcc aatacgaaag aagcaacttt
     1261 tgtaattaaa aacgaacacg gtttacacgc tcgcccaagt gcggtgttgg tgaatgaagt
     1321 gaaaaaattc aacgccaaaa ttgaagtgca aaatgttgat aaaaattcac cgcttgtaag
     1381 tgccaaaagc ttaatgaaaa ttgttgccct tggcgtaacc aaaggcacga cgctacgctt
     1441 tgtggcaagc ggtgatgatg ccgaagtagc acttgcggca atcggtgctg cgattgaagc
     1501 aggtttaggc gaataagcga ggaatcatta tgcgtattgc aaccgttacc ctcaaccctg
     1561 cctttgattt agtcggcaaa cttcaacgta ttgaaatcgg cgaagtgaac accgtagaaa
     1621 cccttggttt ataccctgcc ggcaaaggta ttaacgttgc taaagtttta gctgacttag
     1681 gcacaaaact ttcggttacc ggctttttag gcgaagaaaa tcaaggcgat ttcgtaaatg
     1741 cctttaaaca caatgatttg gctgatgaat tttaccgtat taacggtaaa acccgcatta
     1801 atgtcaaaat cactgaaacc gaggctgatg taactgatct gaactttctc ggctttgaaa
     1861 tttcggaaag cgattgggaa aaattcgtca cattatctca tcagtgggaa agcaaatttg
     1921 acttagttgc agtgtgtgga tctctccctc gtggcgtaac gccggaaaaa tttgcttctt
     1981 ggttggaatc tttacaccgc caaggcttaa aagtggtgtt agataccagc aatgcggctc
     2041 tcaccgccgg cttaaccgct cacccttggt tagtaaaacc aaaccgccga gagctggaag
     2101 tgctggtcgg gcattcactc aactcaatcg aagagattat tagtgcagct aaacaattac
     2161 gttcccgtgg tattgaaaat gtaattatat caatgggcga acaaggctct ctttggctaa
     2221 atcacgaagg cgtgttacaa gcccgcccac cacgttgcga aaatgtagtt agcactgtag
     2281 gtgctggtga ttcaatggtt gccagcttga tctacggctt atctcaaggt tggagcaaag
     2341 agcagacctt gcgttttgcc tcagctactt ctgctctagc tgttgttcaa agtaacgttg
     2401 ggattgcaga ccgtgcggcg ttagacgata ttattaaaca aaccgacatt accgtgattt
     2461 cagaaaatca ttaaacctca atcaaaggaa caaaccaata tgaatatttc ttttgtattt
     2521 cctcaaacac taggcaacgc acgccgtttc ttagtgaatg aaatgttatc tgccgctgcc
     2581 aagcaacaag gacacaatgt tgtggcggca aaccaagctg attttgtggt gttattcgat
     2641 aacgcaattc cacaagaagc tgccggcaag caaggggcaa ttttggactt agaacaagcc
     2701 tttgctcaac ctgaagccag tctcaaacaa gcggtcgaaa atgcacaaac ttttgcaaat
     2761 gctaccgcaa ccactgcggt ttcagcggtt tcatctggtg tgaaaaatat cgttgctgtt
     2821 accgcttgcc caactggcgt ggctcatact tttatgtctg cggaagcaat cgaaaattat
     2881 gccaaagcac agggttggaa catcaaggtt gaaacccgtg gtcaagtagg agcaggaaat
     2941 ccaatttccg ccgaagaagt cgcagcggca gatttagtct ttgtagctgc cgatattgat
     3001 gtcgatttgg aaaaattcaa aggcaagccg atgtatcgca cctcaaccgg tttagcattg
     3061 aagaaaacca ctcaagaatt tgaaaaagcc tttgctcaag cgaaaattta cgaaggtggt
     3121 gtggcaaaag cggataatgc tgaagctcca acttctgaga aaaaagggtt atataaacac
     3181 ttgatgaccg gtgtatcaca tatgttaccg ctggtggtag caggtggctt gctcatcgct
     3241 atttccttta tgttcggaat tgaagccttt aaagatgaaa ccatcgcagg cggcttgccg
     3301 aaagccttaa tggatattgg tggcggtgcg gcattccact taatgattgc ggtattcgca
     3361 ggctatgtag cgttctcaat tgcagaccgt ccggggttag ctgtcggtct tatcggcggt
     3421 atgcttgcta ccaccgcagg agcagggatt ttaggtggta tcgtagccgg tttcttagcc
     3481 ggttataccg taaaattctt aaatggtgcg attcagctac cggcaagttt aacctcactt
     3541 aaacctattt tgattttacc actcttaggc tcagcgattg tcggcttact gatgatttat
     3601 gtcatcaacc caccggtgaa agcattaatg gatgccttag tggaatggtt aaacacaatg
     3661 gggcaaacca atgcaattat tttaggtatt attctcggtg cgatgatgtg taccgatatg
     3721 ggtggtccgg tgaataaagc ggcttatacc tttggtgtgg gtttaattgc ttcacaacaa
     3781 tatatgccaa tggcagcggt gatggcggca ggtatggttc caccaattgg tatggcgatt
     3841 gcgaccctga ttgctcgtag caaattcaac accaaccaac gtgatgcagg taaagcttca
     3901 ttcgtgttag gtttatgctt tatttcagaa ggggcattac cgttcgtggc ggcagaccct
     3961 gtgcgtgtaa ttgccagctc aatcttaggc ggtgcaaccg ccggtgcaat ttcaatggca
     4021 ctaggcatta ccctacaagc cccacacggc ggtttattcg tgattccatt cgtttcacaa
     4081 ccgttaatgt acttagctgc tattgccatc ggctcattag tcaccggcgt agtctatgcc
     4141 gctatcaaac aaaaagcaga ataaagcaca aacacaaata caaacaaaaa cggagcgaaa
     4201 cgctccgttt ttatatcata ttggtactta ctgaattcta tttcatcgaa atatcaagtc
     4261 taaaatatta tttttgcgat cgagatcgaa aaaatcattt tcatcacttt acgaataata
     4321 tcaactcgtt atgattttgc tacgaggaga tactatgcag tttattgaat ttaccgatcc
     4381 tgatagtgga atttcttatc aatacagtga atttactatt gctaatgtcg catttatcat
     4441 taatttctgc tcagatgccg atgttatatc gactttgtcc gcattaggca aagatatcac
     4501 aaactatata aacacctatt cctgttgcac aatcaaattt atggcgaaag agcatctaga
     4561 aaatagcggt tctaatattg acatttatgc ccccgcagcg aatcatcagt tcaaacgtaa
     4621 agaaataatt gctttacaag aaacccttga gcgtttatta tttgagcatt atgtacgttt
     4681 tacaccagaa agctatctct tcattgccga gagagattca cttaaccgaa tgtatcagcg
     4741 tatgtgtgtg ccacgatgtg attttatgca atctttccaa gtggtttatc ccttgggcgt
     4801 taatcaagat tgtttcattt taattacgcc aaaaggaaat ctaaaatgaa tcaacaacgt
     4861 ccagtttccg ttcgtttaaa gcaagaaggc ttaatcgctt ttaagcaagc ctatcagcga
     4921 gcaaaaaaag caggtctatt gaaaccggtc aaataatctt taaaccgctt gctctacaag
     4981 cgatttattt ttccttaatt atcacacctt gctacgaaaa ctatcccaac tcaataatcc
     5041 aatcgaaacc agcaaacaga ccatcaaaat ataggaattg gcatcgagtt tttcgccgat
     5101 ggcaaaagaa atcagcaaca tcaccaacgg ttcaacatag cccagtaaac ctaatacatt
     5161 aatcggtaat aaattgctcg agaggatata aagaataaaa gcactgccac ttaccagccc
     5221 cagcaatccg aggtagaaat aaatttgcgg attttctgcc actattggcg tcatttccac
     5281 ttggctgaga taataaagtg caacgggtaa taccagtaac aactccacaa aaaaagtagc
     5341 taacgtgttg atttgaaaat aacggcgaag ggtaatataa agcggataac ccaacccagc
     5401 tacccaagtc gcccacgaaa tcgtgctgtt aaaaaacaaa ctactgccaa caccgatgac
     5461 tgcgaaaagt agagaaagcc atttcaggcg ggtaaaatgt tctttaaaca ccatttttcc
     5521 tagagccacc gccacaatcg gtaaaagcaa gtaaccaaac gacacctgca acgcctgccc
     5581 gtgattagga gcccataaaa acagccaaag ctgcacgccg gtgttgagag caaggagcaa
     5641 aatgaccaat acaagcggtg gattttgtcg aattttttgc aaaagatccg caaaagccga
     5701 ttgctgttta aacaatataa tcgccagcaa aataaacgga atgactacca ctatccgaaa
     5761 gccgaacatc gcctctccct ctaacgggcg aagcaatatc gcaaaatagt aaactgctcc
     5821 aaacagcaca ttggctgcaa gcgaagctaa aattcctttg agcatttggc tttcctctta
     5881 tcaacaatca aacaacaagc ggttgacttt gaacaaaaat ttacaaatct tatctacgcc
     5941 ccatagtatg aaaaaatttg taagtaagct agctatattc gatttttccc gatacaatgc
     6001 tcccaatttt tcactctttt atttatatta taggacttca taatgaaaaa gattttttgg
     6061 attttactga tcgccatgct tgctgttggc ggttattctt taacaaaata caacgattta
     6121 atgcgtgcag aagaagacat caactccgta tggggaaatg ttgaatcggc ttaccaacgc
     6181 cgtgcggatt taattccaaa cttagtgaat accgtaaaag gtcaggctaa ctttgagaaa
     6241 gaaactttaa cctctgtgat tgaagctcgt gcaaaagcaa ctgcggtaac cattgaccca
     6301 agcaatgcaa ctgaagagca aatggctaaa ttccaagaag cccaacaagg tgtaaactct
     6361 gctctttcac gcttattggt ttcagttgag aaataccctg aattaaaagc ccacgaagcg
     6421 tttttaaatc tacaagctca attagaaggt acggaaaacc gcattaacgt tgaacgcaat
     6481 aactttaacg aaaaagtgaa agagtacaac aagcaagtgc gtgaattccc gactaaatta
     6541 gcggcaatga ttatgggctt taaagcaaaa ccgcaattta aatctgaagc aggttctgat
     6601 aaagcaccaa ccgtaaactt caactaattt tagtttcaat ttattcatat taaaagcaat
     6661 aagctctttc aaatccggtg cttattgctt tatttttaag gggaacaaat gggattattt
     6721 tcttttctct ccaacaaatt accgatagat acgcaacgca ttgaacaagc aattgccgat
     6781 ttagagcaaa aaacctctgc cgaattgcgt gtggtggtgg aacgaaaagc caaaatcggc
     6841 aaaaccgaca acgccgctat gttgcgagca agtgagcttt tcgatgaatt aaaaatgcgt
     6901 gaaacggctg aacataacgg tgtgttgatc tacctttcat tcaagcctca ctacgctgcg
     6961 attattggcg atgaaggcat tcatcaaaaa gtcgataacg atttttggca aaaaatctat
     7021 gccacaatgt gtttggactg ccaacaaggc gattacaccc aagccatttg tgatgcaatc
     7081 aaaatggtgg aagctccgct cgctcaccat ttcccttatc aggctgatga taaaaacgag
     7141 ctttcaaacg aggtggtagt caaatgatga aatccctttg caaatttcta tctattttca
     7201 accgcttgtt attggtgtgc ttggctctgt ttagcctaaa tgccacagcg gtgacctacc
     7261 cagagccgcc taatccgttt tattatatta cggactacac caaaaacacc ttgagccaac
     7321 aagaatggcg gacattagaa gatgccttaa ttgctaactg tgccaagaca agttcgcaaa
     7381 ttgccgtggt gattattcca agcacggaag gcgaggcagt ttcaacctat gctcataccc
     7441 tgtttaacaa atggggaatc ggacggagca aaaataacga gaacaatggt atattgttat
     7501 taattgccaa aaatgatcgc aaactcttta ttgccaccgg acgtgggctt gaaggagcgt
     7561 tacctgatgc gattgcatcg agcattatcc gcaatgacat cacgccattc ttcaaacaag
     7621 agcaatatgc agccggtatc gcccatggct tatccgccat tatggcagcc attaacgggg
     7681 aatatgcccc ttatgcaagt tatggcgaag aaatgcaaga atttgatgac atagacggct
     7741 tactcttttt cttgtttgcc ggcattgtga ttttcctaat tttccgccca cgaggaaaca
     7801 gtacctatat tagtcccagc tcaatggatc aactaggaca aatactaaga gaaagccaac
     7861 gcagaggtgg gggctttggc ggtggtctcg gaggtggctt tgatcgaggc tcaggtggat
     7921 ttggcggagg cttcggtggt ggttttggcg gaagcagagg cagtggcgac agcttcggtg
     7981 gtggttcatc aggcggtgga ggcgctggag gaagctggta gtttccgccc aatttaaaac
     8041 aatacaagcg gtcatatttc tcaaaaaaat tgcgtatttt tcgctaaacg cacaaaacgc
     8101 taatgaaaat aagaccgctt cctcacttct ctaagctatg ccctttttag taacaatgct
     8161 acggcttcac aagctatgcc ttcacctcgc ccggtaaacc ctaatttttc tgttgtagtg
     8221 gcttttacat tcacttgtga tatatcgcat tgtagatcgt ctgcgatcac ctgtctcatt
     8281 ttatcaatat gcggtcgcat cttcggagct tgagcaataa tggttacatc gacgttaccg
     8341 acttgatagc cctgttcttg cacttgtcgg taagcttcaa tcaacaaacc acgactatcg
     8401 gcatttttgt attgcatatc agtatcaggg aataatttgc caatatcacc taaagctgct
     8461 gcgccaagca acgcatctgt taaagcgtgc agcgctacat ctccgtcact atgcgcaatg
     8521 aagcctgtat gataaggcac ttcaacccca gcaatcatca gtggtctatc ttcgccaaaa
     8581 gcgtgaacat caaaaccgtg tccaatacgt atcattttag ttctccaaat tatgtgtaag
     8641 gtaaaattcc gctaaggcta aatcttcagg gcgagtgatt ttgatattat cacttctacc
     8701 tgaaaccaat tgtggctggt agcctgcaag ctccattgca gatgcttcgt ctgttacctg
     8761 aagcttattg gcaaaagcag aggataatgc ttgttttaat gcttgagcag gaaaaaattg
     8821 tggggttaaa gcgtgccata aggttgagcg atcttctgtg tgtgcgattt tcgtgccgtt
     8881 tgctcttttc atcgtatcta ccgctggaat ggcgagaatg ccaccttgcg gatcgttaat
     8941 ttgcaaaagt ttatctaaat ctgaccgctt gaggcaaggg cgagccgcat cgtgaactaa
     9001 tgcccaagca ttttcagtgt tgatttcctg taaggcattt agcactgaat ctgctctcgt
     9061 ttctcctcca aaaacaagtt ggatcttagg ggattttagg agttccaatg tggaataaaa
     9121 agggtctttt cttgccaccg ctacaatcac tttttcaaca tgagggtgtt caagaaaaat
     9181 agacactgta tgctctaaga tagtcttacc ctttaattgt aaatattgtt ttggtttttc
     9241 tgcttgcatc cggctaccaa ctcctgacgc cggaattact gcaataattt ttcgcttcat
     9301 aatatatcaa ttatgtatta tttgtttttt ggtacaattc ggtagaacat ctcgttctct
     9361 tttaccattt ctcgttcaag tcttgctctc tcttcaagtg catctacgcc gttctttaaa
     9421 tcgtaaattt cggcttcaat tagtttattg cgtgaagtaa gctttgtgtt ttctactttt
     9481 aataaagcaa tttcttcttg cacttcttga taatcactcc aaccattttt tccaaaccaa
     9541 a
//
LOCUS       DANLXB010000097         9483 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLXB010000097 DANLXB010000000
VERSION     DANLXB010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9483
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..358
                     /locus_tag="PXD41_001599"
     CDS             <1..358
                     /locus_tag="PXD41_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289119.1"
                     /translation="AELKYSGSNIPSEYSKFNLENVLIDFPNKTNSVAYQNLVIHNAK
                     TRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQVRCHLVHGSLSPTPENHEVV
                     KYCYLILWDCLKGFCD"
     gene            complement(626..1363)
                     /locus_tag="PXD41_001600"
     CDS             complement(626..1363)
                     /locus_tag="PXD41_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289120.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(1360..2328)
                     /locus_tag="PXD41_001601"
     CDS             complement(1360..2328)
                     /locus_tag="PXD41_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6289121.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            2509..2844
                     /locus_tag="PXD41_001602"
     CDS             2509..2844
                     /locus_tag="PXD41_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6289122.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            2828..3151
                     /locus_tag="PXD41_001603"
     CDS             2828..3151
                     /locus_tag="PXD41_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6289123.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3141..5027)
                     /locus_tag="PXD41_001604"
     CDS             complement(3141..5027)
                     /locus_tag="PXD41_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6289124.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5057..5857
                     /gene="metF"
                     /locus_tag="PXD41_001605"
     CDS             5057..5857
                     /gene="metF"
                     /locus_tag="PXD41_001605"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL6289125.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5906..7066)
                     /locus_tag="PXD41_001606"
     CDS             complement(5906..7066)
                     /locus_tag="PXD41_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289126.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7126..8142)
                     /gene="galE"
                     /locus_tag="PXD41_001607"
     CDS             complement(7126..8142)
                     /gene="galE"
                     /locus_tag="PXD41_001607"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL6289127.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8230..8391)
                     /locus_tag="PXD41_001608"
     CDS             complement(8230..8391)
                     /locus_tag="PXD41_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL6289128.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8369..9370)
                     /gene="lpxK"
                     /locus_tag="PXD41_001609"
     CDS             complement(8369..9370)
                     /gene="lpxK"
                     /locus_tag="PXD41_001609"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL6289129.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9372..>9483)
                     /locus_tag="PXD41_001610"
     CDS             complement(9372..>9483)
                     /locus_tag="PXD41_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6289130.1"
                     /translation="IISHKDELLAHKEEIIENQKRELALLRDLVETLKNK"
BASE COUNT         2601 a         2063 c         2109 g         2710 t
ORIGIN      
        1 ggcagagtta aaatattcag gtagcaatat tccaagtgaa tattctaaat ttaacttgga
       61 aaatgtgctt attgattttc ctaacaagac aaattctgta gcatatcaga atctagttat
      121 tcacaacgca aaaacgcgtg caggaaaatt aaaaacacaa tatgcaaatg ctcacgattt
      181 aggcaatttg gttttagtag aggatatcca aaaaatattt tccgggttat tagaaataat
      241 ttatcaagtt cgttgccatt tggtacatgg tagcttaagt ccaacacctg aaaaccacga
      301 agttgttaaa tattgctatt tgattttgtg ggattgttta aaaggatttt gtgattagtt
      361 attgtcaata aagctacaag cggtcaattc tcccaaaact ttgcaaattt ccccgcaaaa
      421 ctgaccgctt gttctcctct atccattcac ctcaaccaac ttttctctct acccctactc
      481 aaaatcggtt aaacaatctg ttgaggtaaa tgttgtgtcg gaatgggatt taatcttaat
      541 gaaactgaaa aaatcttctg ccaagcaaat ttccctaaaa ttggaagttc atttccaatt
      601 tctcaaaaaa tcacccaaac cggaactaca cttccaattt ttcaatcccc cacatttccc
      661 ttttctccca atccatttca gctttcaccc caaaagccgt tgcaatattt tcggcattta
      721 agaccgcttg tgtgttgccg ctgacgagta aattgccgtt tttaagcaga atgatttcat
      781 cacaaaaacg gtaggcaagg ggcaaatgat gaatcaccac cacgcaggtt tgtgttggag
      841 ttagggcttt gagctgctgc ataatatcga tttggtagta ggggtcgagg gcggcaatcg
      901 gttcatcggc aagcaagatc ggggcttgtt tcatcaaaca acgggcgagt tgcactcggg
      961 tctgttcacc gccggagagc tgttggtaag tgttgtccag caggtgagaa atcgccaatt
     1021 gttcggcaac cgaacgcacc ttttgacgct cttgttcagg cggaagcggt gcgggcaagc
     1081 cgagtgcaat cacatcatac accgaaagtt gccacgccac gttgagctgt tgggcgaggt
     1141 aggcaaattg tcggctcctc tcaacggcgg aaagggcgtg cagtttgcaa ttttccagcc
     1201 aaatttcacc gcttgtcggg cgtagaatgc cggcaatcgc tttgagcaac gaggatttcc
     1261 ctgccccgtt tgcgcccata atgccgatca atttgccttt tggcagatag caagagaggt
     1321 gttgaatacc gtgggcaagg gtgagatttt caatcttgat cattgtgcca atctccattg
     1381 ctgggtgaat aaaatccaaa tcaaaaacgg tacgcccaaa attgccgtga gcgtgccgat
     1441 gtaaattcgg gcaaaaaacg gcacatattg caccgccaga tctgcaatca gcagtaacaa
     1501 cgccccgatt aaagcggagg taagataaag ctgggacggc ggttttttca gccaaatacg
     1561 ggcaagatga ggggctatca agccgataaa accgatggtg ccggtctgtg gaatcgttgc
     1621 tccgaccaac agcgccacgc caatgctaac ggtaaaaaaa ctgcgttgca ggttgatgcc
     1681 cattgttgct gccgtctctt cgccaaaggt gagcaggtcg agataacgcc gttcccgata
     1741 gaggcagaca atgccgagca agatcaacgg taacgcccaa catactgcct ctgcggttgc
     1801 ccagactaat gagccttgca accagcggta gagttccgcc aacgcccacg ggctttcggc
     1861 attggaaagc agtaaagtca ccgctgcccc gagcaacacg tttaccgcca cgccacttaa
     1921 aatcatcatt gttgtgccgt ggcgaaagct aatcagccac accagcaaaa atgcccccag
     1981 cgcccctgcc acaccgccaa acagtagcca gcccatcggg gctgaaaaat agtagagcag
     2041 aaatacgctc accgccgttg cccccgaact gctcccaagc aaaccggggc tggcaagcgg
     2101 atttttaaac acgccctgca tcgcattgcc ggcaagcgca aggctggcgc ccgtcagcac
     2161 cgccaagcca atacggggca gtcgaatttc acccagcacc agccagcgca gatcgcttag
     2221 cacgccttcc gcatttttaa gcaaggcaaa atcgctcagt tggtaaaagg ctgcgttgct
     2281 aacaatcagc aacaacaagc ttccaagcac aatgtttaat ttcttcattc ttctttctct
     2341 catcaaacgt gcaaattata ccatagcgcc aaagtcaagc tgaaaacgct atttttgcga
     2401 tcatcatcga aaaactagcg tttgccgaat gtaacccacg acaggctttg ctatattcct
     2461 tcaatcagcc taagttttgt atttaaaaca ttacagattg ggggtagaat gtaccatatt
     2521 gaacgcactg aaattttcga ccaatggctt gaaaatttaa aagatccact tgctgtggtg
     2581 accattgcaa gacgtattga acgtgccgaa agcggaaatt ttggcgatac caaatatatc
     2641 gcagaaggaa tttccgaaat gaggctaaac gtcagcaaag gttatcgcct ttactatgcg
     2701 caaaaaggta gcattattta tatactacta aatggcggac ataaaggcac gcaacaagct
     2761 gatattgata aagctaaaat gctatgggca gaaattaaac aacatatggc agaacaggag
     2821 aaaaagaatg aacgaattat atgacgcccc aattccacaa gctactcgtg aaaaatttgg
     2881 cattcaacct ttcgatgccg ctgaatacct cgccaatgac gagctaatcg ccctttattt
     2941 ggcggaaaca ttgaaagacg gcacggacga ggagtttatt caagcattga ataccgtggc
     3001 acgagcgaaa ggaatgaatg agttagcgaa aaaagcaggg atcgggcgtg aaagtttgta
     3061 tcaaagcctt tccagcagta agccccgttt tgagactatc cgcaaaatta ttagcgcatt
     3121 aaatttggag ttgtcggtcg ttaaggcgta agtttgtgca ttaattgtat cccctgccaa
     3181 accccgtggt cgaaacagta ggtgtatttc atcggtagga caagcggtgg attttggctc
     3241 attttttgcc atattttttg taatgctggg tgtttgagca gttcggcttg gttgttatag
     3301 ctttggttat cggtgaggaa caataactgt ttgggttgcg ctaacagcag tttttctagc
     3361 gagaaattct gtggcgtgag gtcgcttttt aatggtgaca gaccgagaag atccaacaac
     3421 gtttgatatt gcggaaaatg cggttcgatc atacccgttt cgcttagaat taaagtttca
     3481 gcaagcggtt gttttagcgg aattttttgc aaacgtagcc gttccaccag cttttccgct
     3541 ttggcttgat tttgggttag ctcgcccagt tgtaaaatca gtgtgaaaag ctgttcgggt
     3601 gtttgcggac tgtcgtttaa tgcgactaac ttaaagccaa gctgtttcag ccgtgcggtg
     3661 agttgcggat agaaggtttc attcagcaaa atggtgctgt cggcataggg caacagggcg
     3721 gtgagttcag gctcaacggt gggcttgtcc gtgttcagtt tatccaacat catcaacggc
     3781 ttttgggaat agggcgacat cgcccgaatt tgctgtggtt cggcaagttc cagcaacaga
     3841 cggtcgctac acaaatttgg cgataaacgg taagctcctg aaatacgccc agtgatagaa
     3901 tttttaaact gtgaattatc ggtgtaacgg ccactaatag aaaaactgtg atcttgttcg
     3961 gtaaataagc gatattctag tgccgcactt ttttcggata aggttttttc acgcaaatat
     4021 ttatcagagg tatagcgtgt ttttgcataa tctgtcagta aactgaccgc ttgtgtcact
     4081 tctccttcac ggtcaaagtt tacatctaat tgataattcg cattaagttg tttttcgttg
     4141 ctgtagcgag catttgaacc gaaatgtgtt gctttactat tgaattggct gatatttgct
     4201 tggtgtttca gcagctcttg ttcatttccc caataaccgc ctaatttaaa agtttgattg
     4261 cgagtacggg aatattcacc gctaacgtct gaattatagc catcaatatg aacggtttgg
     4321 gaagattgag cggcaagaac ttctacccct ttgttaccga ggtcataacc taaacgtaaa
     4381 gagccgttat cacgatgaaa gccatctcgt tcgcttgcac caccggtttt cacttctgag
     4441 cctgtttctg tggtatagct gaaatggttt ttactcagtg cggaaatgcc tttggtacga
     4501 tggctatcac cgtgtaaggc atagtagaaa ccgttgtgaa atccggaaag tgttgcgctg
     4561 gcatcacggg tattatttga gcctaaacca agatcgacct ccgcattgaa tggtttctct
     4621 ttgtataaac cgcttttagt ggtgatataa actacaccac ccatagcact gcttccccaa
     4681 agggcggatt gctcgccacg caacacttcg atacgttcga tattgctaat cggtaagcca
     4741 ccaaaatcga aatttccaat attaatcgga ttgactttta caccgtcaat cacaaccgca
     4801 gtatggcgag attctgcccc tcgtaaaaat aagctagtaa gagtaccacg cccaccttgt
     4861 tgcccaatcg ccacgcccgg cacagtcttt aacacatcac tcacataagt cgcattgcgt
     4921 gcggcaaaat ctttttcggt aagaaccgtc acgctggaag cggttttgtc ttggttgatt
     4981 ggggttgcat aggcggaata gactgttacg gaatcaagct gagtcatctc attttgtgca
     5041 aaagctgtac ttgctagtgc aacagaaatg gcgaatgctg tgggattcta ttgatcgcct
     5101 aagtccttta aaaccgaaat ttgtttcggt aacttatgga gcaaattctg gtgagcgaga
     5161 tcgtacacac agtattgtga aatcaatcca agaaaaaaca gggatcattt cagctccgca
     5221 cttaacaggc attgatgcaa caccggaaga attaaaggta attgccaaag attattggga
     5281 tagtggtatt cgccgaattg ttgctttgcg tggcgatata ccgaaaggtt atgataaagc
     5341 actattttac gcctcagatt tagtcgcttt attaaaatca gtagcagatt tcgatatttc
     5401 cgtggctgcc taccctgaag ttcaccctga agcaaaatca gcacaggcag atttacttaa
     5461 cttgaaacgt aaaatcgatg cgggtgcaaa ccacgttatt acgcaattct tttttgatgt
     5521 agagagttat ttacgttttc gtgatcgctg tgtttctatt gggattgatt gtgaaattgt
     5581 gccgggtatt ctgccggtga caaatttcaa gcagttgcaa aaaatggcag cagtgactaa
     5641 tgttaagatc ccgacttgga tgggtaaaat gtacgaaggg ttagatgatg atcaaaccac
     5701 cagaaactta gttgcagcaa gtattgcaat ggatatggtg aaagtgcttt ctcgtgaagg
     5761 ggtgaatgat ttccacttct ataccttaaa tcgtagtgaa ctcacttatg caatgtgcca
     5821 tactttaggc gtaagacctg atttaacaac tgcataatcg aacattaagg ctgtatagct
     5881 aaatgagcta tacctcctta tagttttact tctcttcagc cacccaaatc tcgccatttt
     5941 ttaataataa ataggctttg ttggaatcgg ctttggtttg tttaattcca gccggcaggg
     6001 cggttggcaa ttcagtgatc ttgcctgttt tatccaacac aacaacttgt tgatagccca
     6061 tttggggtat cagtgcgaaa gtctctgttg tcgccactaa attggtttcg tgatcaccat
     6121 agcggtgatt gcttaagccg gaggtaataa aacgttcagc taattggttt cctttcaggc
     6181 tgtattcaac caaattgcct tttagatgtg gcatttggat tgcatagagc ttgcggttaa
     6241 agataaacgg cgattgccaa cggttagtcg acagcggctc actttcggct tctattgata
     6301 attttccgtc tttaacgcca atcacaacag tgctggcccc attgccatcg ccagagataa
     6361 cagaaacgat cttggttttt ccattttctg tgaaagtcgc ccagcggttg gcttcaaata
     6421 ctcgcccttg ttgggtgagt ttttctgcta aggggtttag ggtatggcgt tctagaaatt
     6481 gaatttcgcc tgcctctaca tcatcgccta atacaccgtg ttgatatgta aaatcatcag
     6541 gctttgcaag tacagcaata tgcccttggt taggtgtttc ggcatcaaaa tcaatttgca
     6601 gagggtgagc atcaggcaac acctcggttt ctgcggtggc agtaatagtg gcttggtttc
     6661 cttgcgtttc aattctggct aacttaaatt gtccgttttg tttggtcacg gcaatggtgg
     6721 caaaattaag ggcggtcatt gtagctttcg gggcaagggg aatgttggag gtatagattt
     6781 tatcagccgt ccacagcata aaatgcccgt tttgatccgc taacgcaatt cgttggtatt
     6841 gagctttagg ttcaatctcg gtggaaactc catctgccag tttttgagct tgttgtgtga
     6901 ctctccataa ttgtttttgt tggttaatta ccactaattc gccttgttct gaaaggtcaa
     6961 attggcttac tttgccaatt tggggaagtg ggagtggaga aagctgaaca tcagcaaaca
     7021 aagaagcgga gaacaagctt aagattaaca gaatagattt tttcattagc gttacctaaa
     7081 aagaagattt aaatgataaa gggagatgtt atctcccttt acgctttagc ctttataacc
     7141 attcgggtta tttttttgcc aattccaagt gtctttcatc atttgttcta gcccacgctc
     7201 ggtttcccaa cccagttgct ctaacgcttt ttgtggagcg gagtagcaaa cggcaatatc
     7261 gcccgggcgg cgatctacca ctttgtatgg aatagtaatg ccatttgcgg cttcaaaggc
     7321 ttttaccata tctagcaccg aataacctgt tcctgtgcct aaattgtaaa cgtggaaacc
     7381 ggcatcattt tggtgcttgt ctaaggcttt taagtgacca agtgctaaat ctaccacgtg
     7441 gatataatca cgcacacctg tgccatcgtg agtattataa tcgccaccaa acaccgataa
     7501 ttgaggtaat ttgcccacag ccacttggct gataaacggc attaagttat ttgggatacc
     7561 gtttggatct tcaccgatta aaccgctttc gtgagcccct accgggttga agtaacgcaa
     7621 tactaccgca cttaattgtg ggaaggcttt aacggtatct tcaagaatgc gttcaaccat
     7681 atatttggac gtaccgtaag ggttggttgt gccaccgaca gggcaagatt ccacaatcgg
     7741 gataatctgc ggatcaccat aaacggtcgc cgatgaacta aacacaatgg tattcacatt
     7801 ggcttttagc atctcttcta ccaatacaat cgagccggtt acattgtttt gatagtaacg
     7861 tagcggttct ctgacgcttt cgcctacagc ttttaaaccg gcaaagtgaa ttaccgattc
     7921 aatctgattt tccgcaaaaa ttttgcgtaa aatatcacga tctaaaatat cgccttgata
     7981 gaattttacg ctcttgccgg tgatctgctt cacacgctca agtgatactt cagaggaatt
     8041 agaaagatta tctaacacca cgatttcacg attttcgttt aataattcaa ctaatgtatg
     8101 tgaaccgatg tagcctgcac cacctgtaac taaaattgcc attttatgtt cctctataaa
     8161 attaatacga accaaggtta ttgttgctat tttacccgat ttaatcaggc ttgctaatat
     8221 ttattcagtt tataatgcca ctccggcttc cggcagtaat tccggaatgc cgtttttaat
     8281 cgggtaagca atattgagct tagggttaat taatcggttg ttctctttgt cccattctaa
     8341 tttttcatta gagacagggc agacgaggtt attgagtagt gtttcgttca tcttcttttc
     8401 ctagtttttg tagaatcggg gctaacaaac aagcggtcga tttttctgaa aatgttgcag
     8461 aaaccggtac ataccaccaa tttggctgtg caaaatcgtg gcattttacc gcatctttct
     8521 cggtcattaa taacggcgtt tggctatcag caaattgagc cagctgagcc ttatcaaagg
     8581 cttgatgatc ggcaaagcct tgagttttgg caagcggaat gcctaatttt tctaacatcg
     8641 taaaaaagcg tggtgggtga ccgataccgg caatcgccac acagggttgg gtaaattcgc
     8701 ttaatggctt gcgttgattg gtgactaaat taattgcatc agacggttca agcgtcatta
     8761 aatgctcgtt agcttgcggt gtgccgccgt tgcaaataac cgcttgcacg gagtttaaac
     8821 ggctcggtaa ttcacgcaat ccgcccgccg gcagcacaaa accgttaccg aaacgcctta
     8881 cgccatcaac caccacccat tccatatctc gctgtagggc atagtgttgc aagccatcat
     8941 cggtgatgat gatgtccggc tcaaactgat ttaatagtaa ttcaatgctt tgttggcggt
     9001 ttggagaaat agccaaaggc acattggttc gctgaacaat cagaaccggt tcatcaccca
     9061 ccatttcagc agaactttct cgggtaacta attgcggaaa cgttttcgct ttaccgccat
     9121 agcctcgaga aatcacgcct acttttacgc cacgctgttg cagttgttcc accagccaaa
     9181 cgaccactgg cgttttgccg ttgcctccaa ccgagatatt accgactacc agcataggca
     9241 aaggcgaacg gtacgattgc aaaatattca gagaatataa ccgcttgcga gcttgactaa
     9301 tcagccaaaa cagcaacgaa agcggcgaaa gcagccaagt gataagggat tttgtttgcc
     9361 agattttcat attatttatt tttaagtgtt tcaactaaat ctcgtaataa ggctaattca
     9421 cgtttttggt tttcgataat ttcttcttta tgggctaata attcatcttt gtgggagata
     9481 ata
//
LOCUS       DANLXB010000098         9455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLXB010000098 DANLXB010000000
VERSION     DANLXB010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            138..6209
                     /locus_tag="PXD41_001611"
     CDS             138..6209
                     /locus_tag="PXD41_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6289131.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
     gene            complement(6431..7816)
                     /gene="hflX"
                     /locus_tag="PXD41_001612"
     CDS             complement(6431..7816)
                     /gene="hflX"
                     /locus_tag="PXD41_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL6289132.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(7836..8108)
                     /gene="hfq"
                     /locus_tag="PXD41_001613"
     CDS             complement(7836..8108)
                     /gene="hfq"
                     /locus_tag="PXD41_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL6289133.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            complement(8177..9130)
                     /gene="miaA"
                     /locus_tag="PXD41_001614"
     CDS             complement(8177..9130)
                     /gene="miaA"
                     /locus_tag="PXD41_001614"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL6289134.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
BASE COUNT         2926 a         1687 c         2195 g         2647 t
ORIGIN      
        1 tgaagtgaaa atcttactat tatcgatatg actttcctct tactaaatta agagtagtaa
       61 ggttgtttat tcggtgggtt gtaattgccg aattatttac gaagtaagct ttataataat
      121 tctaaaggta taaaattatg aacaaaatat ttaaggttat ttttaaccaa acgacgcaaa
      181 aaatggaagt tgtgtctgaa cttgctcgat cgcaaggtaa agccgcttct tctactgata
      241 agcgcggtac tattaaatta gcagcggcta gcattctagg gggagcaacc cttatcagtg
      301 gaatggcagc ctttatgctt tctgctacac cggcagaagc ggcggtgatt attgatagaa
      361 tagaagtaca acaaaaagca ccaaaaaaag ttgttaatgg tggtatagat atttatacaa
      421 acactagttt ggctacagat tctattacga atccatataa ctactttaac ccaggtagct
      481 tatcctatgc agacagaact aagcttcaag aatctaataa ctctgttaat aaggagaagg
      541 attctagatt attgtataag tctaatacta cctcagcaat tgtaattgga cacaatgctg
      601 tagctttaga caataacaga aaaagtagag gaaaaccgaa agcgtcaggc atagccattg
      661 gtgattattc atattctgga gggggattgt ctattgcaat tggttctttt tctcgtactg
      721 caagtattgg ttctgtagca ttaggtacct ctgcacgtgc ggaaggattt aactcatttg
      781 ctgcaatgcg tcaatctgct gcaattgcag attattctac tgcaattggt tcaacatctt
      841 gggcaaatgc tacagctagc ttcgccattg gtgcttcggc tacagcgcta ggtgaccgtt
      901 cttttgcgat tggtagtggt actccacaga cagtggatgg aagttacggt catgaaaata
      961 gacgttcaat ttatgatggg caaaataata ctttagcatt tggaacagat gcattctcaa
     1021 tcggtactaa agcgaaaact aatggtaacc attcatttgc cattggtact aacgcttggt
     1081 ccggtggctt taaattagag aattcaaata tttctgaatt aggacaggta attaatcctg
     1141 atacagcgaa agtagcaaat aatgcatttg ctttgggtac gaatactcgt gcaaattcga
     1201 atgatacttt ggcgttttca acaaatgcaa gtgcaacagg tgatggttct atcgcctttg
     1261 gtgtaaattc gaatacaaca ggaatcggtg cgattgcttt tggtaatgct tctaaagcct
     1321 ggaaaagtaa tgctattagc attggttgga atgcaaactc tcatgcagaa aaagtgatca
     1381 gtattggttc gcattctaac gcgagcaaag atggtgcaat ggcaattggt gatacggcta
     1441 attcaagtgg taataattct gttgcgatag gttatagtgc taatgtaagt aaggcgaatg
     1501 cgacagcagt aggtacacgt gccaatatta cgcatgaagg tggcacagca attggttttg
     1561 aggccaaatc aaaaggtaat tatgcaactg ctattgctta caactcaacc gcaaagggta
     1621 aaaactcaat tgcagccggt gtaaatagta ctgtttcggg tattcgtgct gcggctttag
     1681 gttataacaa tacagtttca ggtaaagata ctttcgtatt aggttctaat gttactgtta
     1741 agacaaaggg ttctgtaatt ctaggttctg actctactga agcaaccgca actaaagaag
     1801 atactgcaac tgttggcaca ttaaaatata gcagctttgc tggcgatgaa aatgttgttg
     1861 atggtgatta tgtgagtgtg ggtaatgcaa ccaatgctcg ccaaattaag tttgttgcac
     1921 cgggtaaaat tgcttccaat tcaacagatg cgattaacgg ttcacaactt tacgcagtag
     1981 ctgacacttt agttaaaact ggctttaaca ttacagcgga tcactctggc ttaggaggtg
     2041 gtgctaaaga agacaatgtg aagttaggtg aaactgttaa gtacacctca accgataaga
     2101 atgttgttac aaccgtaaca aataatacca tcgattttgg cttatccgat aacatctctg
     2161 ttggtggtaa accaggtaaa gatggttcag ttggtgttaa aggtgctgat ggtaaagatg
     2221 gtgtaacaat taaaccagaa gccatcgtat tccacggcgt tgatggcgta aatggaaaag
     2281 atggaaaaga tggtaaagca tcaattaaag ttgagaaagg tgctaaaggt cttgacggca
     2341 acgacggtaa agacggcgaa agcaaaactc gtattgttta cgaaaaacca aatggtgata
     2401 aagaagaagt tgcaacactt aacgatggct taaaattcgg tgcgaatgat ggcaaagttc
     2461 acgatgcgaa attaaatacg caggtggata ttaaaggtgc tacaacaaac actgattggg
     2521 ctaagtttga tgctggtaaa aatatcatga cacaggttgt tggcaatacc attactgtgg
     2581 cgttagcaaa agatctagca ggcttagata gtgcaacatt cggcacacaa ggtgattcta
     2641 cagttatcaa taaagatggt gtaacgattg ctaagaaaga tcctaatgat gcaactaaat
     2701 ctaatgttac cttaacagag gatggcttaa gcaacggtgg taaccaaatc accaatgttg
     2761 atagcggctt aaaaggtaaa gatggtcaac ctgttaaact tactgaggca gcaggtgatg
     2821 ttcttaacaa tgcggttaac gtcggtgact tgaaaaatac tgttactgag actgttactg
     2881 aggtgacaac agatgcgttt ggtctaaaag atgagaacaa caaggagttt aagcaaaact
     2941 taggtacgac agctaagatc attggtgatg gcaatgttaa aacaaacgtt gttgagaaag
     3001 atggtggcca tgcattagaa gttagcctag tgaataatat tactgttggt aaagatggtg
     3061 aaccaggtaa agttggtatt gctggtaaag acggtaaaga tgctattgct ttagatggta
     3121 aagatggagc tatcactgta ggtcgccctg gcaaagatgg tattgatggt actatcggtg
     3181 taaacggtaa agacggttct gcagttgttc ttaacggtaa agatggttca atcggcttga
     3241 acggtacaaa tggtaaagat ggtttaacca ttaaaggtac tgagggcaaa ccagggcttg
     3301 ttggtaaaga tggtttacca ggtaaagatg gtgtaactcg tatccaatat cagccaacag
     3361 atggcaatgg tgatcctata ggtgaaccag agcaagtagc tactttaaat gatggtttac
     3421 actttaaagg tgatgatgca acactagtat ctaagaaatt gaatgaaacc ttagaaatca
     3481 ttggtggagc tgataaagat aagctaactg caaataacat cggcgtaaac agcaaagatg
     3541 gtaaattatc tgttcaatta gctaaagatc ttaaagactt gaactcagct acattcaaac
     3601 cacaagatgg agagaatggt caagaaggta aaggtccaac aacagtagta aataataatg
     3661 gcgtaactat cacgccaaaa gatggcacag atggtaaagc agttaagctt actgaagacg
     3721 gtctagacaa tggcggcaac caaattgtta acgtgaagag cggtattgac ggtttagcag
     3781 gtaaagacgg cattaacggt aaagatggta agccaatcac ttcagtgaac gacttaacag
     3841 acgatcaatt aaaagaagtt ggtactaacg ctgcgaatat taatgatgtt gtaaatgcaa
     3901 gcaacgatat tatcgagaaa ggctttagca ttgcagcgga taatggtgaa actgatcacg
     3961 ttaaactagg tgaaactgtt aagtacacct ctaaagacaa aaacatcatc acaacagtaa
     4021 gtgataatgt gattgacttt acgttaaata acgattttac cattggcggt ccaggtaaag
     4081 atggttcaat cggtgttaaa ggtgcagatg gtacagttgg tgttacttta aacggtaaag
     4141 atggctctat cggcttaacc ggtccgaaag gcgctgacgg taaagatggt gcaagtgcaa
     4201 ctatctctgt aaaagacggt gctaaaggcc ttgacggtaa cgacggtaaa gatggcgaaa
     4261 gcaaaacccg tatcgtttat gagaaaccag acggtacaac tgaggaagtt gcaacactga
     4321 acgatggctt aagattcgta ggtgatgacg gtaaagaaat cgttaagaaa cttaatgaga
     4381 cgttaaaaat ctcaggcggt gatactgatt taacgaacct gtccgataac aatatcggtg
     4441 ttgtaaacaa caatggtgcg ttaacagtta aattagcgaa agacattgat ttaacgaaag
     4501 atggttctgt aactattggt gatactacgg taaataatga tggtttaact atcaaagatg
     4561 gcccaagtgt aactaaagcc ggtatcaatg caggcgataa gaaaatcatt aacgttcaag
     4621 acggtgaaat ttctgcaacc agcaaagatg cggtaaatgg tagccagtta tatcaagtgc
     4681 aagaagttgc taacgcaggt tggaacttaa cagcaaatgg taaagacaaa ggcaacgtta
     4741 aaccaggagc aacagttgat ctaaacaaca aagacggtaa cattattatt actaaagaag
     4801 gtaataacgt gaccttcggc ttgaaaaaca acttaaccat tggtggtaaa gatggtaaag
     4861 acggtcaaat cggtattgct ggcaaagacg gtaaagatgg cgtaaccatt aaaggtgacg
     4921 gcacaattac tgcaggccgt gacggtaaag acggtgttga tggttcaatt ggagctacag
     4981 gtaaagatgg cgcttctgtt gtattaaacg gtaaagatgg ctctatcggc ttaaccggtc
     5041 cgaaaggcgc tgacggtaaa gatggtgcaa gtgcaaatat tgcagtgaaa gatggtgctg
     5101 aaggtgttga tggtacaaat ggtaaagatg gattaccggg tgagaacggt aagactcgta
     5161 tcgtttatga gaccaaagat aaagacggta aaactgtcac agaacaagtt gcaaccttaa
     5221 atgatggttt aatcttctct ggtaacaatg aagatgtgaa gaaccgtcag aaactgaata
     5281 ctgaagttaa agtgaaaggt gaaggtgtgg ataaaacagc ttctgaaaac tttaagtcag
     5341 catcaggcaa catcaatgtg aaagcgaatg gtacagacac attagaggta caattagcga
     5401 aagcaattga tttaacggaa gatggttctg taacaactgg cgacacaacc gtaaataaca
     5461 atggtttaac cattaaagac ggcccaagtg taactaaagg cggtattgat gcgaaaggca
     5521 cgaagatcac taacgttaaa gatggtgatg taacggcaac aagtaaagat gttgtgagcg
     5581 gtagccagtt gtataatgca atgcagaata caggctggta tctcactgtt gatggtaatg
     5641 tagctgaaac ttcagagaaa ggtgctcaac gtgttaataa caatggtaaa gtggccgttt
     5701 caggtggcaa aaacatcgtt gtttcacgta aaggttcaac tgttgaagtg gcaacctcaa
     5761 gcaatcttga atttgattca gtgaaagttg gtggtacaac tatcagttca actgttgcaa
     5821 aagatggcgt aaatgagctt aacattgcag gtagcaagaa tgcgcaaaca cgtattacga
     5881 acgttgctcc gggtgtgaaa ggcactgatg ctgttaatgt gaatcagttg aaaggtgcag
     5941 aaaatcgtct gaacaatcgt atcagtaacg tagataaaga cttacgtgca ggtattgcag
     6001 gtgcattagc cgcaggtaat ttatatcacg taacacaacc tggtaaatcg atggtttcag
     6061 ccggtgtagg tgcttaccgt ggtcaaggag ctattgctgt aggttattct cgtttatcag
     6121 ataatggtaa agtgggtatc aaattcagtg ttaactctaa cagccgtggt gatacaggtg
     6181 ctgctgcaag cgtaggttat cagtggtagt aactgcttga ttaagctttt cttccccact
     6241 tttggggaag aataaataaa atccttcaaa tagaacgggg aaatctggtt tatttgaggg
     6301 atttttttat tggctaaatt ggatttaatg gataaaacaa gcggtcaatt ctttacactt
     6361 ttttgcaaaa aaacgtaaag aattgaccgc ttgcataatt taaatataac ttactcagaa
     6421 gtgagattaa ttacccccat tttgccagct caatatattc ggctagatcc ggaaattgtt
     6481 tcacccattt gttccattgc acttcgttaa tttcaataga gataatccgt tcaccgaact
     6541 cattaaaatg ctcggtttta atgcagtttt ctgctttaaa ttgtgcgtaa attgcaccgg
     6601 cagtaaccgg gaggagcaag ttttcacaca ctaagttact gcgaagcctt tcttgaatgg
     6661 cttggaataa cagctcaatg ccgctatttt cttgggcgga aagatacacg gcaactggcg
     6721 tgccatcggc attgcgttca atatgcggtt ctacaccttc taatttatca attttattga
     6781 ataccaataa agtaggaata tctaacgctc cgatttcgtc caacacttga tttaccgcat
     6841 caatattttc gtttttgcgt tcgtctgagc cgtcaatgac gtggagcagt aaagtagctt
     6901 cggtggtttc ttgcagggta gatttaaagg ctgaaactaa atcgtgcggt agaaaacgga
     6961 taaaacctac cgtatcggca agaattgtcg tgccgacatc ttgcacctga atccggcgta
     7021 aagtcgggtc aagggtcgca aaaagttgat cggcagcata aacaccagct tgggtaatcg
     7081 cattaaacag ggtagatttg ccggcattgg tatagcccac taaggatact gttggaatat
     7141 cggctttttg tctggttttt cgattttgat tgcgttgctt gctgactttt tccaagcggt
     7201 tgagtaactg ttggattcgc actttaatca aacggcgatc ggtttcgagc tgtgtttcac
     7261 ctggaccacg caagccaact gctccgcctt tttgttggtc ttgattagta actcggcgaa
     7321 ccaaacgggt cgataaatgg cgaagttgtg ccagctcgac ttgtagtttg ccttcgtgcg
     7381 atcttgcccg ttgagcgaaa atatccaaaa tcaagccggt tctatccacc acacggcagc
     7441 cgcataacga ttgcaaatta cgggtctgag ccgggctaag ttgatggttc accagcacta
     7501 ctgttgcccc gagtcgttct accgcttcgg caattccctc cgctttgcct tgccccacat
     7561 aatatttgat atgcgaactt tggcggctgg tggtaagcgt tgccagcact tcgacaccgg
     7621 cagattctgc cagcgtttta aattccagca aattttcaac atctttatgt tgcccgagat
     7681 agagatgcac caaaatggct ttatcttgat tttctggatc ggtaggcgag gcggcttctg
     7741 tagtttggct tgcttcagat aaagcaaagc caaacgcaga attttcttct gagtttggca
     7801 atgattcgtt taacattggt tgagtaataa tgttattatt ccgcttgttc agttacttcg
     7861 gcagcaggct gagcgtgttg ggcttggttg ttattgttat gcgataacgc acgggcagga
     7921 acaaccgttg aaatagcgtg tttatacacc atttggctta cagtgttttt taataaaatc
     7981 acaaattggt cgaacgactc gatctgacct tgtaatttaa tgccgttaac taaataaatt
     8041 gaaacaggaa tacgctcacg acgaagtgca ttcaaatatg gatcttgtaa agattgacct
     8101 tttgccattg ttattttcct ttttatagtt gtgtgatttt taagacacca aataatgcga
     8161 taagtgccaa aggcgtttag atattatcac aattctttaa ataatgatcg atcttttcca
     8221 ccatttttgc tttagaactg gtcggagcta aactatctaa ccaagtcagt tcgccttgcc
     8281 agccacgcag ccaagtaatc tgccgttttg ccagctggcg ggtggcacaa atgcctttaa
     8341 agatcgcctc atcgagcgaa atatcgcctt gcaaatattc ccacatttgg cggtagccca
     8401 cacagcgaat cgagggcaaa ttaatatgca aatctttgcg taaaaataac cgcttgacct
     8461 cctcttcaaa gcctagctca atcattttgt gaaagcgttg ttcaatccgt tggtgtagaa
     8521 ctgcacgatc ttgaggagcg attgcaaatt gtaagatatt ataaggtaga gcctcacctt
     8581 gctgagcagt gagttcggtc atcgttttgc cggtaatgta aaaaacttct aacgctcggt
     8641 tgatccgttg gctgtcattt gggttaattc ttgcaccggc aatcgggtcg attttcacta
     8701 attcttgatg caatgttgcc cagccgtgtt gtgccgctcg gctttcgatt tcagcccgaa
     8761 tggctggatc ggcagagggc aggggagata acccttcaag caatgccttg taataaagca
     8821 ttgtgccacc caccaagagc ggaattttac cctgtgaggt aatatctgcc atttcacgca
     8881 acgcatcagc gtggaaattc atcgccgaat agctctcggc agggtctaaa atatcaatca
     8941 agcgatgcgg tgcaagggca agctcttcct tgcttggctt tgccgtgcca atatccattc
     9001 ctttgtaaat taaggcagaa tcaacactga ttacctcaac cggcaattct tggcgtaaag
     9061 caatagctaa atcggttttc ccggaggcag tcggccccat taaaaaaagg gcaaggggtt
     9121 ttttattcat attaatatac tgtatataga tacaaaaaaa gccgtgaaat tcacagcttt
     9181 tttgttacaa tcctgattgt gctactggta ggctcgttag ggctattcgc agtagcctga
     9241 gcctaaatca tccttagtag cactaaggag gcttacaatg aaagaactac tattgatttt
     9301 agttgcactt gggtttctgt gtgcagcagt tgaaattttc acgctctttc aactaatcta
     9361 tctgttcttg taagcggcta gatgctaggg gcgggttcgt gttccgccca gacttcttta
     9421 tattaccttg atttcttgag taactcaatg atttc
//
LOCUS       DANLXB010000099         9309 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLXB010000099 DANLXB010000000
VERSION     DANLXB010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9309
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            24..239
                     /locus_tag="PXD41_001615"
     CDS             24..239
                     /locus_tag="PXD41_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL6289135.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(298..1455)
                     /locus_tag="PXD41_001616"
     CDS             complement(298..1455)
                     /locus_tag="PXD41_001616"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL6289136.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXD41_001617"
     CDS             complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXD41_001617"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL6289137.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(3774..4514)
                     /gene="pflA"
                     /locus_tag="PXD41_001618"
     CDS             complement(3774..4514)
                     /gene="pflA"
                     /locus_tag="PXD41_001618"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL6289138.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(4763..5788)
                     /locus_tag="PXD41_001619"
     CDS             complement(4763..5788)
                     /locus_tag="PXD41_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6289139.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(6023..8347)
                     /gene="pflB"
                     /locus_tag="PXD41_001620"
     CDS             complement(6023..8347)
                     /gene="pflB"
                     /locus_tag="PXD41_001620"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL6289140.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(8437..9261)
                     /gene="focA"
                     /locus_tag="PXD41_001621"
     CDS             complement(8437..9261)
                     /gene="focA"
                     /locus_tag="PXD41_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL6289141.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
BASE COUNT         2613 a         2105 c         1838 g         2753 t
ORIGIN      
        1 gcaaccacta ttaggagtta aatatgtttc cagaatttcg tgatctcata acccaattaa
       61 agcaaaacaa ttcacatttt gctcgcttat ttgataaaca taatgagcta gaccagcgta
      121 ttaagaatat ggaggcaaat attgaactgg caacacatga agaagttgag gcactaaaaa
      181 aagaaaaatt gcatttaaaa gaccaacttt atgcaattct aaaacaagaa tcggcttaac
      241 ctaaagtaaa agctcagaaa atattctgag ctttaatttc ggtcatatta gacaatatta
      301 cagttttacc ggctcaataa tttcgcttgg gtagcaaccc aacactttga ggtagctggt
      361 aacttgctcc aattccgcca atgctttttg ggtgttctcg gaatgaatat ttgcctccag
      421 ctccacataa aacatctctt cccaaggttt gccgtaaatc gggcgggatt ccagtttcat
      481 catacgaata tgatgatttt tgaataccat taacgcatcg accaatgcac ccgcctgttg
      541 cgtggtggtc attaacagta acgttttggt ttgtacctgt ggcgaaacct gcacagcctc
      601 tttggcaaca acaataaaac gggtgatatt gtgagcttga ttagcaatat cggttttgat
      661 attcgtcaag ccatacaatt ttccgccatc ttcattgccc aaggcaacaa tattcggctt
      721 attcaagcga gccaccattt gcattgcgtg cgagctgctt tcgcaatatt tgatatgtac
      781 tttatctagc ccggctaaaa attggctaca ttgctgggca ggctgagggt gggtgtaaat
      841 ggtatccacc tccgccaaat caaccgtgcc gtttgccaat acacaatgtt tgattgggta
      901 cgccaattca cccactaagg ttaaatcggt atgctgcaat aaatcataca cttcattgat
      961 cgaacctgaa gtcgtgtttt caagcggcag tacgccaaaa tcggcttcac caaggctgac
     1021 tttctcaaat acttcattaa aagaatggca gcttaattcc gccaatgtgc cttgatattt
     1081 tttggcaaac tgtcgagatg ccatattaga ataagagcct cgcattccca aaaacgcaat
     1141 cgaaacctgc tcttcttttt gtgcattcaa tttattttgc agataatttt gctgagtcag
     1201 cactgaatct tcaataatac gttggaaaat ttgggtcaca tattgcggat caagctggta
     1261 attctccgct tcggcaaaat ttaccagttc ttgaagcaaa atcttttccc gttctaaatc
     1321 tctcaagggt ttttgtgtga tttctttgct ccgcaccaca tcaaaggcta agcggtggcg
     1381 ttctgccagt agctttaata aattgcggtc taagttggtt atttgggttc gaatatcggc
     1441 taaatctaaa gacattattt cactctctgt caggctaaat gctgaaaatt ataacgagtt
     1501 gcaaaagaaa gaaaagacaa gcggtcaaat ttacaaaaaa atttgcaaat ctaaccgctt
     1561 gtaaaacgtg tttactttat tgagtgcaat caacaggctc ggcattacct acaatgcctt
     1621 tgtgtctgag caaggcatca agggttggct tacgcccacg gaagcgttcg aacagcacca
     1681 ttggctcttc tgaaccgcct cgggttaaga tattatctaa gaaagactgc cccgtttcag
     1741 ggttgaaaat cccctcttcc tcaaagcgtg aataggcatc tgctgaaagc acttccgccc
     1801 ataaataact gtagtagccc gccgcatagc cgcctgcaaa aatatgcgag aaactgtgtg
     1861 gcgttctcgc ccactctacg cctttggcaa cagcgacttg gtctttcacc tctttaagta
     1921 aggctaacac ttgtccttgt ttgctcgggt catattcggt gtgtaggcgg aaatcaaaca
     1981 agccaaattc taattggcga agcacaaaca ttgccgcttg gaagtttttc gccgccaata
     2041 attgctctaa tttcgctttt ggtaacggct cgccggtttc ataatgccct gaaataaagg
     2101 ctaatgcctc ttcttcccag caccagttct ctaagaattg gcttggcagc tccactgcgt
     2161 cccacggcac accgttaatg ccggcgacat cgcccacgtc aatttcagtt agcatatggt
     2221 gaatgccgtg tccaaactcg tggaacaaag ttgtcacttc atcgtgggta aacaatgccg
     2281 gtttatcgcc aatcggttta ttgaagttac aggttaaata tgccaccggt ttttgtaatg
     2341 tgccgtcagc caagcgtttt tggttgatgc aatcatccat ccacgcccca ccacgtttgt
     2401 tttcacgagc gtataaatct aagtagaacg agccacgcaa gcggtcattt ttatcaaaaa
     2461 tattgaaaaa acgtacatct ttgtgccata catccacatc tttttgttct tccacacgca
     2521 taccgaaaat gcgtttaatt acttcaaata agcctgataa tacgcgattt tccgggaaat
     2581 acgggcgaag ttcttcatca ttgaccgaat acaatgcctg tttttgtttt tcgctgtaga
     2641 acggaatatc ccataaatcc aaatgttcaa tgccgaaatg ggctttagca aattttttca
     2701 aatcgcataa ttcatttttg ccttgagctt tcgagcgagc ggctaaatcg ttcaagaaat
     2761 ctaatacctg ttgtggattt tctgccattt tggtggctaa tgaataatca gaataagtct
     2821 taaagccgag aagttgggct ttttcgtgac gcagttttaa gatctcatca atcaccgcac
     2881 tgttatccca tttgcctgca ttcgggcctt gatcagaagc acgagtcaca taagcacggt
     2941 acatttcctc acgcagtgct ttgttttcac aatacgtcat caccggcaaa tagcttggga
     3001 tttcaagagt gaagcgatag cctttcttac ctttgctttc tgcggataat tttgccgctt
     3061 ctaatgccga ttccggcaag cctttaagct gtgcttcatc ggtaattaca atatcccaac
     3121 ccattgttgc atcaagtacg ttgttgctaa attgcgagtt gagttccgac aagcgtgcag
     3181 aaatttcccc gtagcgtttt tgtttctctg ccggcagtga aatgcctgat aattcaaaat
     3241 cttgtaagct gttttcaatc gcctttttct gtgcaaccga ataagtttca aactcagggc
     3301 tgttttttaa cttcacatag ccttgatata acccttgatg ttgccccgcc caagtgctgt
     3361 attccgataa taacggcaag cacgcttggt aagcctcacg caactctggg gaatttttca
     3421 ccgcattcaa atgccctacc ggtgaccacg cacgggagaa tttatcctct gccattgctt
     3481 gtggcatata gaaattttcc cacgtcgggt tttcaatttg tgcgactttt tcaacagttt
     3541 cacggcattc tttgatcacc gcttctaccg ccggtttgat atgttcaggt ttgatttgtg
     3601 agaacgcagg caagcctgtg taatttaaaa gagggttaga cattattttt tccttttatg
     3661 gtcaaaatga aaattcgtat caagataata cacaaagtga gagagaaaag aaaacaagcg
     3721 gtcatatttc aataattttt tgcaaaaaaa tcacaaaata tgaccgcttg tctttagaat
     3781 ttgactgtat gcccgtaact ttcaatgatt ttttggatac gctctaaatc ctctttaggc
     3841 ggtgacatta ccccttccag ctcatattta tagcctaagg tttcccattt gtgagcccct
     3901 aaacgatgat aaggcagaag ttccactttc tcaatgttat ccattccttg aataaactgc
     3961 cctaaacgat gggcagaatc atcgtcatca gtataacccg gcacgaccac atagcgaacc
     4021 caagtcggtt tatttaattt gtgcagataa cgggcgaaat caagggtacg cttattcgac
     4081 accccgacta aatcttggtg aacttcatca ttgagctgtt ttaaatccag caagaccaaa
     4141 tcggtcactt caagcatttc atccaccacc gggctataat ggcgaacaaa accattggta
     4201 tctaagcagg tattaatgcc ttcagcctta caggcacgaa accaatcccg cacaaactcc
     4261 atttgcaaca ccgcttcccc acccgaagct gttacaccac cgccggttgc tttcataaaa
     4321 tgcttataag tcgtgacttc tttcatcagc tcttcaaccg taatttcctt accaccatca
     4381 agatcccaag tatcacgatt atggcaatat ttacaccgca tcaaacagcc ttgcaagaac
     4441 agaataaaac gaatccccgg tccatctacc gtaccgcagg attcaaaaga atggatacgt
     4501 ccaacaacag acatttgtca cctcaaccct caaaaaattt tgagaaattg tagcaaattt
     4561 ttatgttgtt cgcagaaata aatcacaccg gtatatttta agaaaggaga aagtcatact
     4621 attttttgcc tatttcagga ataaactttt attaatctat tgactccatc aacatatcaa
     4681 ccaaatatgt ttaaattttt gcatttttta aagctatttt gaccgcttac aagcagtcgg
     4741 tttttctgaa aactttgcaa acctagccgg cgtggtattt ggcggcgacc tcttttacca
     4801 gtaagtcgaa atcgctttcg taggtgagat cctgcttgac tcggtatttt tcaaattcgc
     4861 tgagggcgaa agatttagca atttcagcgg taactttgcc ggcatcttgt aagatttctc
     4921 ggtcggtggc ggcaagaaag cggttaaggc gggtttccca gtctgccatt gtcatcggaa
     4981 tttggcgttc tgccatatct tccgccatat ccaaataggc agagaccagc cgttgtagtt
     5041 gtgctaattc attatccgat aaataatttt tggcaaccac cacatcaaag gggtaaattt
     5101 tgccttgcgg agcgtctttc caattcgtta gccccatatt cggcttttca gcgttggctc
     5161 gtgccataat cagctcggcg gcggtatgcc cgtgaattgc ccaatggagc ttgttctgca
     5221 cggtggcaaa aaagcgtttg gtggcggttg cggtgcggtc gtagtccacg gcggtagcgt
     5281 aaatgtcggt gattttttgg tagaacttgc gttcggataa ccgaatttcc cgaatacgag
     5341 caagctgttc ttcaaagtat tttttgccca aaatcgtgcc gtcatttttc agccgttcat
     5401 cgtccatcgc aaagccttta atcgcaaagc tatgcacgat ttcggttgcc catttgcgaa
     5461 actgcaccgc tcgctcggaa ttgactttat aacccaccgc aataattgcc gacagattat
     5521 aatgcttggt gtggtagttt ttgccgtctt gggcagttat ccaaaaaaat tggataactg
     5581 aattttcagc taactcattg tcactaaaga tttttttgag atgatagcta atggttcgta
     5641 catcaacatc atacaacacc gccatcattt tttggctaag ccatacattt tcatcggcgt
     5701 aaacggcatc aacttggctt tcgccggtag ctgtaataaa agtgaggtat tccgccacag
     5761 aggaacgaat taaatcttgc ttagacatct ctttctccca tatagaacac tgtaattata
     5821 aacaatatta cgaaagctgt gtaaatgaat agccaatttt tcgagcgaga tcacaaaaaa
     5881 accgcttgcg gcataaatgc tacaagcggt tgattattac tcacaaaatt gtttccaatt
     5941 ttgttcgctc ctacggagcc gtcggcaaag ccaacgttca aaacgcaatg cgttttgtgg
     6001 ctaaaagttt tgcaaattgt aattacatac tttcagtgaa ggtgcgggta attacgtcca
     6061 tttgttgctc tttggttaaa gagttgaaac gtaccgcata gcctgaaaca cgaatcgtta
     6121 attgcggata tttttcaggg tgttctaccg catctaataa tgtatcacgg tttaacacgt
     6181 tcacatttaa gtgctgaccg ccttctacag ttgcttcgtg gtggaagtag ccgtccatta
     6241 agcctgcaag gttacgtttt tgggcttcgt aatctttacc taacgcattt ggtacgatag
     6301 agaaagtata agaaatacca tctttcgcat aggcaaacgg taatttcgcc acagaagtta
     6361 atgaagctac cgcacctttc tggtcacgac cgtgcattgg gttcgcaccc ggtccgaatg
     6421 gagcacctga gcgacgaccg tccggtgtat taccggtttt cttaccatat accacgttag
     6481 aagtgatagt aagcacagac tgagtcggcg ttgcattgcg gtatgttttg agtttttgaa
     6541 ttttcttcat aaaacgttca actaaatcaa ctgcaatgtc gtccacacgg ttatcgttgt
     6601 taccgaattg cggatattca ccctcaattt caaagtcggt tgctacgttt ttcgctacac
     6661 caaccacttc gccagctttg tttttgattt caatatcggt acggattggt tttactttcg
     6721 catatttaat ggctgaaagt gagtctgccg ctactgaaag ccctgcgata ccacacgcca
     6781 ttgtgcggaa cacatcacgg tcgtgaagag ccattaatgc cgcttcgtat gcatatttat
     6841 cgtgcataaa gtggataatg ttcagtgctg tcacatattg ggttgcaagc caatccataa
     6901 agctgtctaa gcgggtcatt acatcatcgt aatctaagta ttcacttgta attgcttcag
     6961 ttttaggccc tacttggtcg cctgatttct catcaacacc gccattgatt gcgtataaca
     7021 aggttttcgc taagtttgca cgagcgccga agaactgcat cattttaccc acgatcattg
     7081 gcgatacgca gcacgcaatc gcatagtcat cgttttggaa atccggacgc attaagtcat
     7141 cgttttcata ttgaactgat gaagtatcaa tagacacttt cgcacagtag cgtttaaatg
     7201 cttccggtaa ttgttcagac caaagaatag ttaagtttgg ctccggtgac ggccccattg
     7261 tgtaaagggt gtgtaaaata cggaagctgt ttttggttac taaggtacga ccgtctaaac
     7321 ccataccggc taaggtttcg gttgcccaca ttgggtcgcc tgagaataat tgatcgtatt
     7381 ccggagtacg caagaaacgc accatacgca atttcattac taaatggtcg attaactctt
     7441 gggcttcttg ctcggtaatt ttgccggctt ttaagtcacg ttcgatataa atatctaaga
     7501 atgaagacac acgaccgaaa gacatcgccg caccgttttg cgatttaacc gctgcaaggt
     7561 aagcgaaata tgtccattgc accgcttctt gtgcattggt tgcaggacct gaaatatcaa
     7621 aaccgtagct tgcagccatc tctttcattt tgcctaaagc acggtgttgc tcggcaattt
     7681 cttcacgcag ttgaatcgtg gcttgaatat cttcgccgga ttctaaacga gcttgtaatg
     7741 aggcaaactg gcgttgtttg tctttcatta agaagtctgc accataaagt gccatacggc
     7801 ggtagtcacc gataatacga ccacgaccat aagcatccgg caaaccggta attacacctg
     7861 atttacggca acgtaaaata tccggagtgt aaacatcgaa taccccttgg ttatgggttt
     7921 tacggtattc ggtaaagatt tgttctactt caggtttaag ctcacggcga taaactttgc
     7981 acgaaccttt caccatattg ataccaccaa acggcataat cgcacgtttt aatggagcat
     8041 ctgtttgcag accaacgatt ttttctaacg atttatcaat ataacccggt gcgtgtgagg
     8101 taatggttga tggcgtgtcg cagtcaatat catacggttc gtgtgttttg ttttctactt
     8161 tgatcatttc catcacatct gcccacaatt tgctggttgc aggtgttact tcagctagga
     8221 aagactcatc accctcataa ggtgtgtagt ttttttggat aaaatcacgt acatttactt
     8281 cagtttgcca ctcgcctgcg gcaaaacctt cccacgcttt ttgttgagcg tctgttagtt
     8341 gagtcatttt aagtcctctg tgttagtaag ttaaaacggg aaagcggtga ttttttgcaa
     8401 aaaatttgca aaatttgacc gcttgaatct gaaatcttaa tgctttctaa tgtataagaa
     8461 ccactgcatt aaaccaatga aaaacacgcc accgacaata ttacccagcg ttgccggaat
     8521 taagttctta aacacaaaat gagatacatc taaatcggca aattgcgttg ggtcaacatt
     8581 aattgctgtc caaaattcag ggctggcaaa gtgcgaaatc gcaatcccca tcggaatcat
     8641 aaacatattt gccacacagt gttcaaagcc ggaagccaca aacattgcaa tcggtaacat
     8701 cataataaag gctttatcgg ttaggctttt acctgcataa gacatccaca ccgcaatgca
     8761 caccataatg ttacagaaaa tgcctaaaca gaaagcctca aaccattggt ggtgaatttt
     8821 gtgctgtgcg gtatttaaaa taaccaaacc ccattgccct ttggctgcca taatctgacc
     8881 actaaaccaa atcaacaata caatggaaat cgccccaaca aagttaccga aatacaccac
     8941 tacccagttt ttaaacatct gtaaccagtt aattctttgg ctggctctgg ctacaatcgt
     9001 aagtgttgat gaggtaaaaa gttctgcccc aaacaccaca cacataatca cgccgagtga
     9061 aaataccaaa ccaccaatca gtttagccat accccaaggc atttggctcg cacccacttg
     9121 ggttgtggta taaaatacaa atgctattgc aataaaaccg cccgcagtaa tggcagagag
     9181 aaaggaatat aattgatttt ttgttgcttt ataaaccgca ccatcttctg cgatttttgc
     9241 catttcagca ggagaaaaca tcagacaacc ttaacaatga gaattgaaaa accgatatat
     9301 tatgtagaa
//
LOCUS       DANLXB010000100         9040 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLXB010000100 DANLXB010000000
VERSION     DANLXB010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1995
                     /locus_tag="PXD41_001622"
     CDS             <1..1995
                     /locus_tag="PXD41_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6289142.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXD41_001623"
     CDS             1995..3287
                     /locus_tag="PXD41_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL6289143.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXD41_001624"
     CDS             3290..4417
                     /locus_tag="PXD41_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289144.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXD41_001625"
     CDS             4419..5081
                     /locus_tag="PXD41_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6289145.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXD41_001626"
     CDS             5200..5550
                     /locus_tag="PXD41_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL6289146.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXD41_001627"
     CDS             5563..6624
                     /locus_tag="PXD41_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6289147.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
     gene            6624..7214
                     /locus_tag="PXD41_001628"
     CDS             6624..7214
                     /locus_tag="PXD41_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL6289148.1"
                     /translation="MVTINSKHGKALGGLLPPVSYDPNGRWLALSLEVEGRELDRIDA
                     RAKTLIDAVDVSTGIFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQ
                     VAKELGYCIKISEPQPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMA
                     GDALMGRYKDPILESLLEEVKPAFSRVWVRYLGDIE"
     gene            7211..>9040
                     /locus_tag="PXD41_001629"
     CDS             7211..>9040
                     /locus_tag="PXD41_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289149.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKR
                     VDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKILG
                     NKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHI
                     DNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQSYCGSGNAGHYLCTKVKGVRFFN
                     NIAIGGRNVSAYGATSCSDIFIFGNREQGMAVTTVDVEAGVQVEDVQTGECVVANNIF
                     RHDIWMSGAKNAIINSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKYGSFDNP
                     SLFIDNINFINNILEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLARNNPFL
                     NLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQEWQKMPF
                     DRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNL"
BASE COUNT         2671 a         1631 c         2248 g         2490 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc taaacacggc aaggcattgg
     6661 gcggtttatt accgcctgta tcgtatgacc caaacggcag atggctagcg ttatcccttg
     6721 aagttgaggg gagagagcta gaccgcattg atgcgagagc caagacttta atcgatgccg
     6781 ttgatgtatc aacaggcatt tttattgatg attgggagcg ggtttgtggc ttaacggcga
     6841 atagctcact accgcttgaa acccgaattg agcgtgtgat tgcaaagctg aatcagttgg
     6901 gtggattgtc gataggctat atcactcaag tggccaaaga gcttggatat tgcatcaaaa
     6961 ttagtgagcc acaacccttt attgctgggc taagccgagc tggggatatg ttatggcata
     7021 aagacattat gtggacattt tttgtggata tttgcaaccc cacagatgat tacaagcgtt
     7081 ttagagcaag tgtgtcaatg gctggcgatg cgttaatggg acgatacaaa gacccaattt
     7141 tagaaagtct acttgaagag gtaaaacctg catttagccg tgtgtgggta agatatttag
     7201 gagatattga atgaaacaag tgatgaatcc gattaatacc ccaacacagc gttttaaaga
     7261 tggcaaccct gccactggtg aatatggcac gattgtgact gctgaatttt tgaataacgt
     7321 ccaagattcg gtcattaaca cccaacaaga attgcacagt gtacttgctg aagcaggaat
     7381 cgaagcaaat gacgaacaag ttaatcaggt ggctaaagca atcaagaaaa ttgcgggcga
     7441 tgctactcgt gataatttta acgcattagc caaccctgat ggttacaaac acatcggtcg
     7501 ctgcaaatcg gttgcggagt tacgtactat ccgcccaacg gaacacggtc agcgtatttt
     7561 ggtggatgct tactatgagg acggcacaac aggcggtggg gagtttgtgg ctgatttgca
     7621 ggatttagtt acgcctgatg atggtggggt ttgttttgtt gtgaataata atggggggcg
     7681 gtggaagcgt gttgaccttt cacatcttac attatttgat ttttgggccg tcggtgacgg
     7741 ggtaacaaat gatgaatcag catttgtaaa tgctatgaga tattctcaat tttttatcga
     7801 aaacggtaca tttcgtatca acaatgccgt taattctgtt cgcgataatg tgaaaatttt
     7861 gggcaataag accggcaaat tagtattagg tgcaggtatc cagcaagcag gggccgaagt
     7921 ttttaatatt aatcacagca attattttat ctcgggtttt tgtattgaaa caccgaacaa
     7981 agcaattggt attcgattta agtctttgga tgatgctggt gttaaaaatc tccatattga
     8041 caatgttgtg tttaatggca ccttctacgg ggtcagggca ggtgaaagta ttcaggcgga
     8101 tactaattac ccaactgata atgtgattgt acaaaactgc caatcgtatt gtggttcagg
     8161 taatgcggga cattatctct gcaccaaagt taaaggtgtg cgatttttta acaatatagc
     8221 aattggaggt cgcaatgtat cagcttacgg tgcaacatct tgctctgata ttttcatttt
     8281 tggtaatcgt gaacagggga tggcagtgac gacagtcgat gtggaagcgg gcgtacaagt
     8341 ggaagatgta caaactggcg aatgtgtggt agcgaataat attttcagac acgatatttg
     8401 gatgtctggt gctaaaaatg ccattatcaa cagcaacctc tgccgtcgct tgcgtgtcac
     8461 atcaggtaat ccgactgaca caggcagcaa caatgtagaa ttttcaaata atcaagcaaa
     8521 atctattgca atatcgaaat atggttcttt cgataatcct tcattgttta ttgataatat
     8581 caattttatt aataacattt tggagcccag tgaatttaat caagatgtgt atattgacgg
     8641 gacaatttta aaacagtgcc aatttattaa taatcgttgt attagcaagt ctaagcaata
     8701 ttctgtcaga cttgctcgca ataatccgtt cttaaattta acatttaaga gtaataaatt
     8761 atcggacaat cctgcgatta tatcaggtaa gcaaggtgtt attttctgcg atgatttgag
     8821 cttaggagta aataagcaca gattaagatt gcgattttca tcgccgatta attttactgt
     8881 taatcaagaa tggcaaaaaa tgccgtttga cagagtgtta aatgatatca atggtcatgt
     8941 tgatattgtc agtggtcaat ttattgcaag gacaggcggc acttttcatt taaaaggtaa
     9001 aataacggtt acaaattcat cggaagatgt gctgaattta
//
LOCUS       DANLXB010000101         8883 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLXB010000101 DANLXB010000000
VERSION     DANLXB010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8883
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(16..300)
                     /gene="raiA"
                     /locus_tag="PXD41_001630"
     CDS             complement(16..300)
                     /gene="raiA"
                     /locus_tag="PXD41_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL6289150.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNEH"
     gene            480..1421
                     /locus_tag="PXD41_001631"
     CDS             480..1421
                     /locus_tag="PXD41_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL6289151.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1517..2404
                     /gene="dapA"
                     /locus_tag="PXD41_001632"
     CDS             1517..2404
                     /gene="dapA"
                     /locus_tag="PXD41_001632"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL6289152.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
     gene            2674..3900
                     /locus_tag="PXD41_001633"
     CDS             2674..3900
                     /locus_tag="PXD41_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL6289153.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            3957..5333
                     /locus_tag="PXD41_001634"
     CDS             3957..5333
                     /locus_tag="PXD41_001634"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL6289154.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(5388..6977)
                     /gene="purH"
                     /locus_tag="PXD41_001635"
     CDS             complement(5388..6977)
                     /gene="purH"
                     /locus_tag="PXD41_001635"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL6289155.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            7149..7418
                     /locus_tag="PXD41_001636"
     CDS             7149..7418
                     /locus_tag="PXD41_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6289156.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(7505..8881)
                     /gene="dacB"
                     /locus_tag="PXD41_001637"
     CDS             complement(7505..8881)
                     /gene="dacB"
                     /locus_tag="PXD41_001637"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL6289157.1"
                     /translation="MTQAEINTEELLNTLPAGTSVSFIAKNLDTNQIITQYQSDIFML
                     PASTQKVFTALAAKLTLNDDFRFQTALLTNGKVENGVLKGNLIARFSGDPELTSGQIY
                     QLMSKLKQQGINKIEGDLILDPSVFASHDKASGWIWNDLTMCFNAPPAAINVDHNCFY
                     VTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPKEAPFCQLDVVVHDNNRYQIKGCM
                     ARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAFNGQVKEPLTAQNGTLLAEHYSEP
                     LPVLLKKMMKKSDNQIADALFRTVANKQHNRPASFQLGSYVIRQLLKTKANIDFKNSV
                     VADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLFETFPIAGVDGTISGRGSISTEPL
                     AKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFINGYSTGELESKTKRAPLNTFENK
                     FYMALFNE"
BASE COUNT         2538 a         1642 c         1878 g         2825 t
ORIGIN      
        1 tgtaaagttt aaacatcaat gttcattttt ctcttttagt ttaattaact gaccttctaa
       61 tttcttctta acatcaaaaa ttgcagtata taaatcttca tgttcagctt tagcgactaa
      121 atcacctaaa ggggtgccaa ttgttgcttc aacttggaat gagttaggtt gttttatcag
      181 cataaaatgt gggtttatca attgggtgtg gtatttttct aacttagcta aacgctcctc
      241 aatatgagta cggattgcag gggtaatgtc catttgtttg cttgaaatat ttaatgacat
      301 aacattttcc tcttgtttag ttaaggcttt tgccgttgat attctaataa ccaaaatatg
      361 ctcatcactc caaaaattca agtgaaaaat gaaataagtt tccaaaaatt tgatctactt
      421 aacactttta gcagttttta gctataatgt aatcataatc tagtatgtga gaataattaa
      481 tgagtgagaa aaaacagtta cctccattcc agacacaatt tttacaccct aaatattggg
      541 gattgtggct cggtttaggt gtttttaagt taattttatg tttgccttat cctattttag
      601 taaaaattgg tctgggacta ggtaaattgt ttactaaatt gggttttggt aaacgtcgta
      661 tgcgtattgc tcgccgtaat ttagagctct gttttcccca ttactctgct gagaaagtag
      721 aggaattagt cgaagaaaat atgaaatcgg ttggaatggc gattattgaa actggtatgg
      781 cttggttttg gtcggataaa cgtattctta aatggtctaa aatcgaaggg ctagagcatt
      841 taacacagcg tgatcaggaa aggggtattt tacttgtagg ggtgcatttt ctgactttag
      901 aactcggtgc aagaattatt gggctacatc atcaaggagt aggggtttat cgaccgaatg
      961 ataatccatt attagattgg atacagtttc gaggacgtgt tcgctcaaat aaagcgatgt
     1021 tagatcgtaa agatgtgcgt ggaatgattc gagctttaaa aaatggcgag atgatatggt
     1081 acgcgcctga tcacgattat ggaagacgaa atagcgtttt tgtaccattt tttgcagtgg
     1141 aggaaacttg tactactgcg ggtagttata tgttacttcg ttctgcccca aagagtttag
     1201 tgatcccgtt tagcccgatt cgaaatttgg actattcagg ctacacagta aaagtcagtc
     1261 ctgccgttga ttttagtcaa tgtcaaaatg aagttgaaac ggctatttta atgaatcggg
     1321 tggtagaacg tgaaattatg gctgcgctaa ctcaatatat gtggctacat cgccgtttta
     1381 aaactcgccc aaatgaaggt gatcaaagcc tatatgatta attttaaata atttcaaaaa
     1441 agtgcttgca tatttaagct gaattttgca atctagcaat gttatcaagc ataataaaaa
     1501 aatacaggag atgattatgg cgaccccttt atttcacggt agtatcgtag cattagttac
     1561 accaatgact catggtgagg tagattatca ggatttaaaa aaattagttg agtatcatat
     1621 tcaagcaggt tctcacgcta ttgtatctgt tggtacaaca ggtgaatcta ccacattaag
     1681 cattgatgaa aatgttaagg tgattaagaa aacggttgaa tttgctgatg gacgtattcc
     1741 aattattgca ggaactggtt ctaatgcgac cagtgaagct atcactatga ctaaattatt
     1801 agcaaacagt ggtgtagctg gttgtttaag tgtagtgcct tattacaaca agccaacgca
     1861 agaggggatg tacttacact acaaagcgat tgcagaaagt acagatttac cacaaattct
     1921 gtataatgtg ccggggcgaa cagggagtga tttaaaacct gaaacaatcg gtcgcttagc
     1981 gaaaattgag aatattgttg ctgtgaaaga agcaacgggt gatttaagcc gcttaccttt
     2041 aattaagcaa ttagccggtg aagattttat tttcttaagt ggtgatgatg ctaccggttt
     2101 tgagtctatg aaattaggtg gtcaaggggt gatctcggtc accaataatg ttgctgctgc
     2161 tgatatggca aaaatgtgtg agttagctct tgccggtcaa tttactgaag cagaagaaat
     2221 taataaccgc ttaatggcgt tacaccatga cttatttgtc gaatctaacc cgattccggt
     2281 gaaatgggct gcttataaat taggtttaat tagtgagcct aatttacgtt taccgcttac
     2341 cacactgtct gaatcagcac agcctgtagt gttaaaagca ttacaacaag cgggcttaat
     2401 ttagttattt tttgcaaatc aaatttgaaa ccggttaagt taattctaac cggttttttc
     2461 atatctaaaa gaaatttcca cataaaaata aaattctaaa tttctttgat ttaagtaaaa
     2521 tttaattttg tttgatggat ttttactcgc caaaaacact attttttctg cttttaatag
     2581 tttgatcaaa aaatacgtaa aatcttgttg tgttactgtt tcccatcgct aatatagcat
     2641 agcttgttag ataattcttt aaaggagatt actatggcta tgccatctca acgtttttct
     2701 cttacttggg tactaaattt atttggtact gcggtaggag ccggcgtttt atttttgcca
     2761 attaatgcag gtatgggtgg gttctaccca cttattatta tgactttgtt agttggacca
     2821 atgacatatt tagctcaccg tggcttaaca cgttttgtgc tttcttcaaa atacaaaggg
     2881 agcgatatta cggctgttgt tcgtgaacat tttggtgaac aggccggtaa attgatcacg
     2941 ctactgtact tctttgccat ttttccgatt ttactgattt atggtgtagg tattaccaat
     3001 accgtgagtt cttttatgga gaatcagctt catatcgcgc caccatctag ggctgtatta
     3061 tcgtttatgc taatagctgc tatgatcgga gtaatgttat taagtgagca agtcatgtta
     3121 aaaatcacaa cttgtcttgt gtatccatta gtgttgattt tattgggctt atctatttat
     3181 ttaattccac agtggaatac agctgcctta cagcaaatgc caactacagg agacttcctt
     3241 actacacttt ggctgactat tcctgtttta gtctttgctt ttaaccattc accggctatt
     3301 tcttcttttg cactttctca acagaaatat taccaagatg acaagaaggc tgaaattgaa
     3361 tcagctaaag tattacgttc taccgccttt atcttggtgt tatttgtgat gttctttgta
     3421 tttagctgtg tattaacttt gacacctgaa gaattagcac aagctaaagt gcaaaatatt
     3481 tcgattcttt cttaccttgc gaataaattt gataatccga ttatttccta ttttggaccg
     3541 ttggttgctt ttttggcgat tggtagctct ttctttgggc attatttagg tgcgcgcgag
     3601 gggttagaag gattggttaa tcaaatgcgt aaagagccga ttgatccaag caaattccgc
     3661 aaaattaccg ctattacttt tttgatcatt ttatggattg ttgcgactat caatccaagc
     3721 attttaggct tcattgaaag ccttggtggg ccgattattg cgatgatctt gtttattatg
     3781 cctgtctatg ccgtatataa agtaccggca cttgcacgtt ttaaaggtga atttggccat
     3841 ttatttgtgc ttgttatggg ttgtattgct atttcagcaa tagtatatgg gttactgtaa
     3901 tctttctaaa atcaatgtag aatacgccct tttattttct atgtgaattt gtgtttatga
     3961 ttagtgtatt tgatatgttt aaagtaggga ttgggccttc cagttcccat actgcggggc
     4021 cgatgaaagc ggcaaaggaa tttgtcgatg aattacaaaa tcgcaaattt ttaaacaaaa
     4081 ttgaccgctt gcgggtagat gtctatggtt cattatcact caccgggcga ggacataata
     4141 cggatattgc catcataatg ggattaatgg ggtatttgcc tcataatgtg gatattgaac
     4201 gtattgagca gacgattgaa aatctaaaac aaaataagca acttatcatt gctgaaagca
     4261 gtgttgagcc taaagtgatt gcgttcgatt tttatgagga tatgccattt catcgagatt
     4321 tcttacctcg gcacgaaaat ggtgtgaaat ttagtgcctt gagcggtgaa gagttgctat
     4381 ttcaaaacac ctattattct attggtggtg gctttattgt tgatgaagct aactttgagc
     4441 aagttaaaaa ttcagatctt tctgttccat tcccatatca gaatgcagca gatttacttg
     4501 cacattgtaa gaataacggg ttaccgcttt cttctttagt ctggaaaaat gagcttgctt
     4561 tacgcagtag agtagaaatt tcggattatt tggcaatgat ttggaataca atggaagcct
     4621 gtattgagcg tggtttgaat acggaagggt tactacccgg gcctctgaaa gtggtacgcc
     4681 gtgccagtgg gctacgcaga atgttagagg caaacagtaa attcaatacc gacccaatgc
     4741 aaattatcga ttgggtgaat atgtttgccc ttgccgtgaa tgaagaaaat gcggcaggtg
     4801 ggcgagtagt caccgcacct accaatggag cctgtggtat tgttccggct gtgttggcgt
     4861 actaccaaaa atttattgca cagcttaatc aagatactat tgagcgttat ttattgacta
     4921 ccagtgtgat tggttcgtta tacaaaatga atgcctctat ttccggtgct gaagtaggtt
     4981 gccaagggga agttggtgtt gcttgttcaa tggcggcagc aggtttaacg gaaattatgg
     5041 gtggcagtgc tgaacaggtg tgtatggctg cagaaattgc aatggagcac aatttaggcc
     5101 taacttgtga ccctgttggc ggacaagtgc aagtgccttg tattgaaaga aatgcaatcg
     5161 cttcagtcaa agcgattaat gccagcagaa tggcactacg ccgtacttct tcgcctcagg
     5221 taagtttaga taaagtcatt gaaacaatgt acgaaaccgg caaagatatg aatgcaaaat
     5281 accgtgaaac ctcaaccggt ggcttagcaa tcaaaatttt accttgtgat taattaatga
     5341 aaaaggctac cttatcaaaa taaggtagcc ttttagtttg tagaacatta atgacggaaa
     5401 tgcctcattc cggttagtac cactgccata ccgtgttcgt tggcggcatc aatcacttct
     5461 tgatcacgca ttgaaccacc tgggtgaatc acacaagtaa tccctacttt tgcagcagcg
     5521 tcaataccat cacggaacgg gaagaacgca tcggaagcca ttacacaacc cacaacttgt
     5581 aagccctcgt cttccgcttt aatacctgca atttttgcgg aataaacacg gctcatctgc
     5641 cctgcaccga taccgatagt ttgcccgtct ttggcataca caatcgcatt cgatttcaca
     5701 tatttcgcca ctttccagca gaacaatagg tcttttagct cagcttcagt tggtttacgc
     5761 tctgaaacca cctttaaatc gtcaatagat acagagcctt ggtcggcatc ttgcactaat
     5821 aatccgccgt ttacccgttt gaaatctaag cgttttacag cttctgagaa ctcgccacat
     5881 tcaagcacac gcacgttttt cttagtggct aacacttctt tggcagaagc agaaacggtt
     5941 ggtgcaataa tcacttcaac aaattgacgg tctgcgatgg tttgagcagt ttcgccgtct
     6001 aattcacggt taaaggcaat aatgccaccg aaagcagaag ttggatcggt ttggtaagca
     6061 cggttgtagg catctaaaat atttttaccc aaagcaacac cacaagggtt agcgtgtttt
     6121 acaatcacac aagcaggctc gctaaattct ttcacgcatt caagagccgc atcggtatct
     6181 gcaatattat tatacgaaag ggctttacct tgtaactgtt tggcggtgga aacagaggct
     6241 tcttttaact cattttcgac atagaatgca gcgttttgat gcgaattttc gccataacgc
     6301 atcgtttgtt tacgcacaaa attgaggttt aaggtgcgag ggaattgtcc acttggttgg
     6361 gttaaatctt cttcctcagc cccttgataa ggcggcactt tttgcccgaa atagttggca
     6421 atcattgaat cgtattgtgc ggtatgctca aacgctttaa tagcaagatt aaaacgggtt
     6481 tctaaagtta aactgttttg atgttgatcc atttcggcaa gaatagcatc aaaatcattg
     6541 ttattgacca caatcgccac atctttatga tttttcgctg cagaacgcac cattgtcgga
     6601 ccaccgatat caatattttc caccgcatct tcaaggctac aatttggatt ggcaacggtt
     6661 tgagcaaaag ggtagaggtt tactaccacc atatcaattc gttcaatgcc gtgttggttc
     6721 atcacttcat catcagtacc acggcgacct agaattccgc cgtgcacttt cgggtgcagg
     6781 gtttttacac gcccgtccat catttcagga aagccggtgt aatctgatac ttctgttact
     6841 agcaaaccgg cttcagccag taattttgcg gttccgcccg tagaaagtaa ttttacccca
     6901 cgagccgata gcccacgagc aaattcgaca atgccttttt tatcagacac acttaataac
     6961 gcctgttgaa tcgccattct taaattcctt aaaatgagtg ttaacgtgaa aataaacggc
     7021 aaagattata acgcaaacgt ttgctttttt catctacaag tggtcgattt tgcaaatttt
     7081 tctgcaaaat cgaccgcttg cactcgtgat taaagcgggt agaatagagg aaaaaaatcg
     7141 gaggaactat gattaaccac aatttagcag atttcgtatt tgagtatttt accgaaaaca
     7201 acctaaaagc aggcacacta cgttatcgct acataaaaga gaacgtgatt gatgcttaca
     7261 gtacccgagt agatgatgcc tttcaaggta aaggtattgc aggagagctt tacaatgctt
     7321 taattgcgtt tgcgcaagaa aaagggctga aaatcaagcc aagttgtagt tatattgagg
     7381 taaaaatgca acgaagtcat cgagatttaa ttgcttagag aggagcaagc ggtcgtaaaa
     7441 tttcaaaaat ttacgaccgc tgtcttattc aattctcaaa aatccatcac acaaaatata
     7501 agccctattc attaaacaac gccatataaa acttattttc aaatgtatta agcggagccc
     7561 gtttggtttt gctttcgagc tcgccggtgg aatagccgtt aataaattgc acaaaagcga
     7621 tgcgttcgcc acgggcgttt ttcataaagc cggcaaggtt gtaaacccct ttcagtgagc
     7681 cggttttggc aatcagattt ttggcaagcg gttctgttga aatagagcct ctgccggaaa
     7741 tagtaccgtc cacgcctgca atcgggaagg tttcaaacag ttttaagctt tcttcgtttt
     7801 gagcgatata ttcaagggtc tccagcattg ttcggctgct gacttgatta tgacgggaaa
     7861 gccctgagcc atcagccacc acgctgtttt taaaatcaat attggctttg gtttttaata
     7921 actggcgaat cacataacta cctaattgga acgatgcggg gcggttgtgt tgcttgttgg
     7981 caacggttct aaacagggca tcggcaattt ggttatccga ttttttcatc atttttttca
     8041 ataataccgg caacggctcg gaataatgct cggcaagtag cgtgccgttt tgggcagtaa
     8101 gtggctcttt tacttgcccg ttaaaggcaa ttttcaggct ttttaactgg gctttaagca
     8161 tatttgcccc gtaattagtt gggtcttgca ccgaaaaact taagccgaac ggttgagact
     8221 ggcgagccat acagcctttg atttggtagc ggttgttatc gtgaaccacc acatcaagct
     8281 ggcaaaacgg agcttctttc ggctcgacaa tataagcaga gctaaacacc tgcaccggat
     8341 aagcggacgg cacattcact ttagcaaatt cgccaatggg ttggtcggca tttaaggtga
     8401 cataaaaaca gttgtgatcc acattaattg ccgccggtgg ggcgttaaag cacatcgtca
     8461 agtcgttcca aatccaaccg gaggctttgt cgtggctggc gaaaaccgac gggtctagaa
     8521 ttaaatcccc ctcaatttta ttgatacctt gttgctttaa tttgctcatt aattgataaa
     8581 tttgaccgct tgtaagctca gggtcgccac taaaacgggc aattaaattg ccttttaaca
     8641 ctccgttttc tacttttccg ttggttaaaa gggcagtttg aaagcggaaa tcatcgttta
     8701 aagttaattt tgctgccagt gccgtaaaga ctttttgggt actggcaggt agcataaaaa
     8761 tatcactttg gtattgggtg atgatttggt tagtgtctaa atttttagca ataaaactaa
     8821 cagaagtacc ggcaggcaag gtatttaata attcttcggt attaatttca gcctgtgtaa
     8881 tgc
//
LOCUS       DANLXB010000102         8874 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLXB010000102 DANLXB010000000
VERSION     DANLXB010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8874
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            141..1118
                     /locus_tag="PXD41_001638"
     CDS             141..1118
                     /locus_tag="PXD41_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6289158.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            1105..2772
                     /locus_tag="PXD41_001639"
     CDS             1105..2772
                     /locus_tag="PXD41_001639"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6289159.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            2776..3195
                     /locus_tag="PXD41_001640"
     CDS             2776..3195
                     /locus_tag="PXD41_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289160.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(3430..4191)
                     /gene="nudC"
                     /locus_tag="PXD41_001641"
     CDS             complement(3430..4191)
                     /gene="nudC"
                     /locus_tag="PXD41_001641"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL6289161.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(4184..4867)
                     /locus_tag="PXD41_001642"
     CDS             complement(4184..4867)
                     /locus_tag="PXD41_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL6289162.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(4864..5712)
                     /locus_tag="PXD41_001643"
     CDS             complement(4864..5712)
                     /locus_tag="PXD41_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6289163.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(5712..6197)
                     /locus_tag="PXD41_001644"
     CDS             complement(5712..6197)
                     /locus_tag="PXD41_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL6289164.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(6199..7521)
                     /gene="pepQ"
                     /locus_tag="PXD41_001645"
     CDS             complement(6199..7521)
                     /gene="pepQ"
                     /locus_tag="PXD41_001645"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL6289165.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            7532..7774
                     /gene="tusA"
                     /locus_tag="PXD41_001646"
     CDS             7532..7774
                     /gene="tusA"
                     /locus_tag="PXD41_001646"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL6289166.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(7841..8272)
                     /gene="rraB"
                     /locus_tag="PXD41_001647"
     CDS             complement(7841..8272)
                     /gene="rraB"
                     /locus_tag="PXD41_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL6289167.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(8287..>8874)
                     /locus_tag="PXD41_001648"
     CDS             complement(8287..>8874)
                     /locus_tag="PXD41_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL6289168.1"
                     /translation="HFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNALTNQKSLA
                     RTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYLQKRECLGG
                     VVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKMVREAILPF
                     QGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
BASE COUNT         2705 a         1896 c         1731 g         2542 t
ORIGIN      
        1 caaaattatt tttctttata aatcaataag ctaccaaaga ccaataaaaa agagtgtttg
       61 tcaagacttg tcttgaaact ttttttgcat acaatcatct accagttcca aacataaact
      121 ttaagataga gcctacgaat atgtctagaa acctcttcca aaaacgctta aatattaagc
      181 cgtatgagta tcctgagctt cttgaattta aagatgcaat tcgccattct tactggttac
      241 acaccgaatt taacttcacc ggcgatattc aagactatcg caccaccatt aacgatcacg
      301 aacgtcacgt gttaacccga gcaatgcttg cgatttcaca agtagaagtg aatgtaaaac
      361 gtttctgggg cgagctatac tgctatttcc caaaaccgga gatggacgat gtaggcggta
      421 cttttgctga aagtgaagtt cgccataaag atgcttactc gttcctattg gaaaaattag
      481 gcctaaatga aatgttcagt caaattcatg aaattgaacc attaatgaac cgcattcgtt
      541 atatggaaag ttttatgaaa gataaagatg ctggcaaagg cgaatttgtt ttatcgttag
      601 tgctgttctc tttatttgtt gagcatattt cattgtttgg acagtttatt atcatgatgt
      661 cgttcaacaa gcataaaaac ctgtttaaag ggatttccaa tgcggttgaa gccacctcaa
      721 aagaggaaga aattcacggt aaattcggaa ttgcgttata cgaaatttta cgtgacgaac
      781 acagtgaact attcacacca gaattttttg aagatttgca aaccttggca aatcaagcgt
      841 ttgaagcaga acgtggcatc ttagactgga ttttcgaaga aggtgattta agctttatca
      901 ccaaagcgac ggtagaaaat tacattaaaa accgttacaa caattcttta agcattttag
      961 ggttagagcc gccacacgac atcgaccctg aattattaaa agagactgag tggtttgata
     1021 ttgaaattct ttcaaccaaa gaaaccgatt tctttaacaa acgtagcacc gattattcta
     1081 aaaaaatgaa acagattacc gcagatgact tattttaata cagaccgccc ggacttccac
     1141 tggcttaatg aagacagccg tttattctta caacgtggct atttattgga aggaacaacc
     1201 gcattagacc gcattcgttt tattgccgaa cacgcagagc gaaaactcgg cattgaaggc
     1261 tatgccgata aattctatca ctatatggca agaggctact tctcgctttc ttcgccaatt
     1321 tggtcaaact ttggcttaga tcgtggctta ccgatttctt gtttcggtag ctacatcggc
     1381 gactctatcc atgaaattat ggtgactacc gctgaagtgg gcatgatgag taaaattggc
     1441 ggtggtactt cggcctactt tggcgatatt cgtccgcgtg gctcgttaat taaaaacaac
     1501 ggtaaatcag acggctcatt taacttcagt aaattatttg acactgtgat tgacgtgatt
     1561 tcacaaggaa catcacgcaa aggtcagttt gccggttata ttgatattga gcacggcgat
     1621 attgacgaat ggctggatat tcacaccgaa ggcaacccaa ttcaattaat gtattacggt
     1681 gtgtgtgtcg gtcacgattg gttagagtca atgaaagccg gcgatccata caaacgtcag
     1741 ctttgggcaa aattgttaca acgtaaaacc gaaaccggta tcccttattt attctttaaa
     1801 gacaatgcca acgcaggtcg tcctgatgta tataaagata aaaatatgac gattcacgcc
     1861 tctaacttat gtactgaaat tatgttgcct tccagcaacg aagaaagttt cgtatgctgt
     1921 ttatcgtcta tgaacctact ctactttgat gagtggaaag ataccgatgc accagaaaca
     1981 ttaacctatt tcctcgatgt tgtaatgagt gaatttattg agaaaagtca atcaattcca
     2041 ttcttagacc gtgcaaaccg ctttgcccgt cgccatcgtg cattaggttt aggcgtgttg
     2101 ggctggcaca gctatctaca ggcaaataat attgcctttg acagcttcca agcgatgcaa
     2161 aaaaacaacg agattttcaa aacgcttcaa gcaaaaacct tgaaagcctc gcaagaattg
     2221 gctcaacgct tcggcgagcc ggaaatttta gagggctatg gtcgccgtaa tactacatta
     2281 atgagtattg ctccgactaa atccagtagc tttattttag gcagtgtgtc gccatcggta
     2341 gagccgttta aatccaacta ctatgtaaaa gatttagcga agatcaaaac cgtgtataaa
     2401 aacccgttct tagagaaatt actccaagaa aaagggctag acaccgaaga aatttggacg
     2461 tctattttac aaaatgatgg ctcggttcag catttggaac agctttccga gcacgaaaaa
     2521 gaagtattta aaacctttgc cgaaatcagc caattaagcg tgattcagca agctgctcaa
     2581 cgtcaaaaat atattgacca agggcaaagt attaatgtga tgatccaccc agccacaccg
     2641 gctcgtgatc ttaaccaatt atacttaaca gcagaagagc tgggcttaaa atccatctac
     2701 taccaaaact caatgagtgc agcacaggta tttaaccgta acctattaag ctgctcaagt
     2761 tgcgaagggt aaataatggg aaatttatcg catacttcac ctaatactat tgttgaagtt
     2821 gttggtgaat ttcctgaaat aacatctagt gggtatacct ttgataaagg tcctattcaa
     2881 ttaagaatcg gcaaacatac tgctccaaat aaaggctttg gtgtaaagca tattgaagcc
     2941 gagcatatgc aagaaattct taatctagga tttacatcag ttaatgaatt tgtcaaagct
     3001 atcatagtag aaaacgctaa aattttttgc gaattctcag atttaaaagg caatcatcgc
     3061 cctattattc tgaaagcaag tattggcatt gtggttctag agcgtaagtt tttggaaagc
     3121 ggtacgatat attcagttgt aaccgcttat agaagaacaa atcctcacgg aatacaaata
     3181 ggcactatga aataaagtac gttagtgtta taatcagttc cacgcaagag catttgtaga
     3241 aaataacagg cggatttggt tttctactgt gggcggcagg tttccgctaa cctgtaatag
     3301 ctatttaatt tttatattaa atcctgaact tgaaacagac taagggattg ctgcggtagc
     3361 taagaataca aacctctcta taatcatata gagaggtttt ttcttattga tgagcacaag
     3421 ttaagataat tatttactct cccgacataa cttcaaggta gcttgaatca gctcaaaagc
     3481 tattgtgcct tgttgtggga tttcaggtaa gctttcctca cagtcgaacc attttgcatc
     3541 gcagatttct tcttcctgta gctgaatttc accgctttca taatccgcta aaaaacctag
     3601 cattaatgaa ttgggaaacg cccaaggttg gcttccaaaa taacgcacat ttttcacttt
     3661 aatgcccgtt tcttcaaaca cttcacgatg caccgcagtt tctaccgcct caccggcttc
     3721 gacaaaaccg gctaaagtgg tataaattgt gcctttatgg cgtagatgat tggctagtag
     3781 gatttgtctg ccttttcgca ccgccacaat aattgacggg ctaatcgttg ggtaagctcg
     3841 attgccacac gcattgcagt aaattgcaat ttcatcgctt gccagtatgg ttttctcgcc
     3901 acattttccg caaaattggt gagtctgaaa gaaatggtta agcgaaacag ctcgatgcaa
     3961 caaatgagac agttcgggtg gtcggttaat ttggcttctt aaataagcaa actctcgctg
     4021 attatccgat tctaacgcct tcaccaaata agccggcgag ccttgatatt gcccgatggt
     4081 taatttctca cgtccactta agcccagctc ttccgcactt ccgaatggaa tttccccagc
     4141 ctccaaggca atatcaaaat cgctgacgat aatccaatat cctttattca tctttcaatc
     4201 ctaattgtgt aaacaactta cgtttttcat tttcagatag cacttgaaac tcaccacagc
     4261 ctaaattgcc taatctaaac tggcctatcc caacacgaat taaccgtaaa gtcgggaaac
     4321 cgatatgtgc agtcattctt ctgacttggc gatttttccc ttcagaaata atcaattcta
     4381 tccagctggt cggaatggtt ttccgctcac gaatttgcgg ggcgatattc caagcaaaat
     4441 cgggcgttgc tattgctctg actttcgcgg gcttggtcaa accatctttt aactccaccc
     4501 cttttgctaa tttggcaaga tcttccggtt gtggaacacc ctccacttgt acccaatagg
     4561 ttttctgctt gtcaaatttc gggtgagcta aacggtgctg gatttcgcca ttattagtca
     4621 aaagcaacaa tccttcactg tctctatcta gccgcccgac cgggtaaata ttgggcatcg
     4681 taataaaatc ttttagcgtt tttcgcccct gttcatcggt aaattgggtt agtacatcat
     4741 aaggcttatt gagtaacaca agggtggttt ccgcaaaggt aagcggtcgt ttttgcggat
     4801 ttttttgcaa atttttagcg aaatttgacc gcttgtttgt cattctttta aaggttggtt
     4861 gtttcatttt ttcaggttcg cccacgcaac agaaagtaaa ataattaagc caccgataat
     4921 cattttaagg gttggcactt cattaaagca aagccacgcg atcacaatcg catacaccgg
     4981 ctcgagggaa ataatcattg aggcagtacg ggcgttgatg gtatcaaggc ttgaaataaa
     5041 cagcgtatag gcaagggttg tacataaaaa accgatacag aaaatccaaa accaatcttg
     5101 ggtggaaacg cttggaaatt cagtgatgga gagaggcaac agaaaaagtg tagcaaaaat
     5161 atactgccac cagcttgctt gcacaccgga aattttgctc atggtacggc gattcgctac
     5221 cgccaaaata ccatacacca aagcagataa cacgccccac aataaacctt gagtggcttg
     5281 attaccaaaa gtaaattcag gggtaactaa aattaaacca accgtgatgg caattaatag
     5341 caccacttca cgaaagcgta atttttcacg gaagaacagg ctttcaaata acgccacaaa
     5401 tgccggaaag ctggcaaagc ctaaggttgc taccgccaca ccacctactt taaccgccac
     5461 aaaaaaagta acccagtggg cagctaataa agctgcagaa aatgcaagtt gagccatttg
     5521 ctgtaagttg agctttacaa gcggttgttt tttccataaa aaatacaaag agatgatagc
     5581 aaaagcaatc atcactcgcc caagcacaat ggtttcagcc gagctttgaa ttaatgctcc
     5641 gaagatcccc gaggcaccaa ataaaaccgc tgtgccgtgt actttaagta gtgcaagtgt
     5701 tcttttctcc actatttgat cctattatgt tgatcttgct cgtccggctt gcgttcaaat
     5761 tctgcatcaa acgtgttgct atcttgcgca gatgtaacag aaaaagacga agtttgggcg
     5821 gtaaaatgca taaacacctt attctttacg ctattaatta cgaaggcttg aatccatttt
     5881 cggctaaagg gtaacacgca taaaatcgct aaaatatcac ttaaaaagcc gggaataatc
     5941 agcaaaatgc cggctacaat aaacatcacc gagttgccga ctgcttcagt cggtatcttg
     6001 ccttggctta aatcttgctt gatggaaaag agggtataaa cgccccttaa cttcacaatc
     6061 cataacccta aaaatgaaat cacgaccagt aacaaaatcg tgggtaacac gccaatgatc
     6121 gagccaatat tcaccagcag cgaaatttcg caatagatat aaaagaaaat accaaacaga
     6181 atcgctaaaa taggcatatt atcctcccaa cgttgcggca gcgtttgccg tcagattttc
     6241 tgccccattg gctcgcatga caatattgtc ttcggtacga atcccgccaa aggctttgaa
     6301 agcctcaatt ttctgccagt taaaggcaga agataaggca ctgtttttcc aaggcttaag
     6361 tagcatctca ataaaataaa aacccggctc aatggtaagc accatatttt cctgtagctc
     6421 acgggtacaa cgcaaacttg ggtaaacctc tggaggagct ttatggctgc ctcgggcatt
     6481 ttgctgaaaa ccgcccacat cgtgcacttg aatacccaat aaatgcccta gtccgtgtgg
     6541 gaagaacgta cggctaatcc cttgttcaaa aatttgctcg gctgaaagat gaataaattg
     6601 atgttccgct aataattgcg aaatcatctg ctgcattcgg gtgtgataat gcaggtagtt
     6661 caccccaata ctcagctcag caataatctg caacttcaac tgttccattt tcgccaccag
     6721 ctcggcaaat tcagaaccgc tgtcaaaggc ataggtgcgg gtgagatcgg aggcataacc
     6781 atttaccgtt gtgccggcat caattaaaaa actgtggcgt tttgcgtggg tgtcaaaatc
     6841 taacgccgta taatgtagca ccgcaccatt ttgattaatc gccacaatat tgccataagg
     6901 aacattgaga tcagattgct gcgtcgcttt caaatattca aggttgattt caaattcgct
     6961 tttgccggca aaaaatgcct cttttgctac ttgatgccct tttaaggctg aaaattgggc
     7021 ttggtaaata ctttcaattt caaactccgt tttgatggag cgggcaaaat tcaggctatt
     7081 cagcactttc tgcggattaa tatggctaaa gcctaacttt ttggctagct caacatcttc
     7141 accgataaag gcacaagcgg tcggattttg gataaaggtt gcaatttcat tctctgctct
     7201 caacaaaacc cactcaaatt ccgcagcgaa aaaggcctcc gttggcactt ttagagtgga
     7261 aacccaataa tcttcagggg cataaaaata gattttcggc ttatttttgc catctaaaaa
     7321 taaccagcaa ttttcagctt ggggatatgg gaaaaagtaa ttaaaataag ggttaatttt
     7381 aaacggggcg gtttgatcgt ctaaaaataa ggtttttgcc ttgccggcat aaatccataa
     7441 accgtctaaa aaggcatttt ccagcaagct ttgcactgtc tgttgcaaac gtgcgagatg
     7501 cgtagagaat agatttttca taaggaataa aatgactcaa ttaactgtaa ataaagaatt
     7561 agataccttg gggctacgtt gcccagagcc ggtgatgctc acccgtaaaa caatccgtaa
     7621 tatggaagag ggagaaattt tgcatatcat cgccgatgac ccggccacta cccgtgatat
     7681 tccgagtttc tgcgaattta tggatcacca attaattcaa aaagaggtgg actccacccc
     7741 ataccattac tggattaaaa aaggcttgga ataaaccaca agcggtcgat tttagccata
     7801 aaattgcaaa tttatgcaca aaatcgaccg cttgttttaa ttaatgacgg cgaggttcgt
     7861 cctcaaaatc gtcattttca tcatcgaaaa attcaccgtc atcgccgtac tcatcttcat
     7921 cagcattcgg atcttcaaag taggttcccc agccctcata ctccgcaccg gctttttcaa
     7981 ttaatggcag taactctttt tgttgtgcgg taatgagatc cgcattcaag tgaatttcgc
     8041 tcacaatgtc gcatacaaaa atcactttac cattttcgtc ttccacttct tccgcttcgg
     8101 aaatttcata gcccagctta taggcatcaa ctactaattt ttccaattta tcaaaatcgt
     8161 ggtgagcaac gtggtgttca ataatataaa gggcttcagg gtctgaacca tcggctaata
     8221 atgatgaaat ggtttcatcg gtttctgtgc gtaattcatc gagattgtac atattgaatt
     8281 ccttacttat tctgtgatta attttggtgc aaaccagcta tctaatttgt tcgacagctt
     8341 atcaataccg attttattca gtgcggaata agcctctact tggatatcac cttggaatgg
     8401 taaaatcgct tctcttacca tttttacctg cttagagcgt gccgattggc ttaacttatc
     8461 cgctttggtc aacagcagta acaccggcaa gttggctgac actgcccatt caatcatctg
     8521 ttgatctaaa tctttcaacg ggtggcgaat atccattaaa atcaccacac cgcctaaaca
     8581 ttcacgcttt tgtaaatact cgcctaatgc tttttgccac tggattttca tctgttcagg
     8641 tactgctgca tagccatagc caggtaaatc cactaattta caattcgttt caaccttaaa
     8701 caagttaatc aactgcgttc gccccggtgt tttggaagtt cgggctaaac ttttttggtt
     8761 agttaaagcg ttcaaagcag tcgatttacc ggcatttgaa cgcccggcaa aagcaatctc
     8821 cacacctgta tcttcaggta aatgacgaat atccggtgct gaagttaaaa aatg
//
LOCUS       DANLXB010000103         8827 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLXB010000103 DANLXB010000000
VERSION     DANLXB010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8827
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..661
                     /locus_tag="PXD41_001649"
     CDS             <1..661
                     /locus_tag="PXD41_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6289169.1"
                     /translation="TTIVGPNGGGKSTLLKILLKLLSPNKGKVIHQKGLKIGYVPQKL
                     HLEPSMPITVYRFLALKPHTTKEMINQALDLFSITHLTENSMQKLSGGELQRVLLARA
                     ILDRPQLLVLDEPMQGVDIIGQTELYQLLNKTRDLLNCAILMVSHDLNIVMANTDEVL
                     CINKHICCAGSPEVITHDPSFIHFFGDQFARNVAFYSHKHNHHHNLHGDICLGECSCE
                     H"
     gene            826..3639
                     /gene="sucA"
                     /locus_tag="PXD41_001650"
     CDS             826..3639
                     /gene="sucA"
                     /locus_tag="PXD41_001650"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL6289170.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            3742..4971
                     /gene="odhB"
                     /locus_tag="PXD41_001651"
     CDS             3742..4971
                     /gene="odhB"
                     /locus_tag="PXD41_001651"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL6289171.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5264..6424
                     /gene="sucC"
                     /locus_tag="PXD41_001652"
     CDS             5264..6424
                     /gene="sucC"
                     /locus_tag="PXD41_001652"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL6289172.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6433..7302
                     /gene="sucD"
                     /locus_tag="PXD41_001653"
     CDS             6433..7302
                     /gene="sucD"
                     /locus_tag="PXD41_001653"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL6289173.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7373..8818)
                     /locus_tag="PXD41_001654"
     CDS             complement(7373..8818)
                     /locus_tag="PXD41_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL6289174.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
BASE COUNT         2754 a         1914 c         1875 g         2284 t
ORIGIN      
        1 cacgacgata gtcgggccaa atggtggagg aaaatctacc ctgcttaaaa ttttgctaaa
       61 attacttagc ccaaataaag gaaaggttat tcatcaaaaa ggactcaaaa ttggctatgt
      121 accacaaaaa ttgcatttag aaccctcgat gcccattact gtttatcgat ttcttgcgct
      181 aaaaccacat actaccaaag aaatgattaa ccaagcacta gatctgtttt ctattaccca
      241 tctcactgaa aatagtatgc aaaaattatc gggtggtgaa cttcaacgtg tattgctggc
      301 tcgggcaatt ttagatcgtc cgcaactctt agtgttagat gaaccaatgc aaggcgttga
      361 tattataggc caaaccgaac tctatcaatt acttaataaa acaagggatc tccttaactg
      421 tgctatttta atggtctcac acgacttaaa tattgtgatg gcgaatacag atgaagtgct
      481 ttgcatcaat aaacatattt gttgtgccgg aagccccgaa gtcattacac acgatccgag
      541 ctttatccat ttttttggcg accaatttgc acgtaatgtt gcattttatt cacataaaca
      601 taaccatcac cataatttac atggcgatat ctgccttggt gaatgtagtt gtgagcactg
      661 ataggcgtcc tttttaccaa atgtttaaaa tttgtaaaaa taatgctaaa aataaccgct
      721 tgcagcacaa gatttatcta aaaatcagac ttacttcaca ttttatttgc ttaaattgga
      781 gtataataag ggcgtgattt cataccacaa acaggtcagg tctttatgca atatacacat
      841 tttgatgatt ggcttgcatc atctgcatta ggcggtgcaa accaatctta tatagaagaa
      901 atttatgaac agtatctaga aaatccagca aatgttgatg aaagctggag aaacatcttt
      961 gattcatttc ctaaaactcc ccaagttgaa caagctcaca cccctattcg tgactatttc
     1021 cgtaaattag cccgtgaaca gcaacctcaa tccgtcacta ttattgaccc agaagcaggg
     1081 gcgaaacaag ttcgcttact gcaatggatt aacgctcacc gtttccgtgg ctatttagag
     1141 gcaaaactag acccaattaa ctattaccgt tggaaaacct ccagcgtgcc tgaattggac
     1201 tacaaatatc acggcttcac cgatgaagat ctcaacgaaa cttttacggt cggtcgctat
     1261 gtctatgata aagacacaat gaagctcagc gaactggata aagccctaaa agaaacttat
     1321 ttagggccta ttggtttaga atttatgcac gttcaagata ttgaacaacg caactggctt
     1381 caagccaaaa tggaaagcgt gctaaacaaa ccgctgttca ccaaagcaga aaaactgaat
     1441 ttattaagcg aattgaccgc tgccgatggt ttagagcgtt acttaggggc aaaattcccg
     1501 ggggcaaaac ggttctcatt ggaaggtagt gatgccttta ttccgatgat gaaagaaatt
     1561 atccgccacg cttcccgtca aggtatgacc gatgtggttt taggtatggc acaccgtggt
     1621 cgtttgaata tgttagtgaa cgtatttggt aaacgcccgg cagaattgtt tgatgaattt
     1681 gccggcaaac acgctgatga aagccgcacg ggcgatgtga aataccacca aggtttctcc
     1741 tcaaactttg ccgtagatga taaaaacgtt caccttaccc ttgctttcaa cccatcgcat
     1801 ttagagattg ttagcccggt ggtaatcggc tcagtgcgtg caagacaaga acgtatgcgt
     1861 gatatcgaac acgaaaaggt gcttgcggtg accgttcacg gtgactctgc agtggcaggg
     1921 caaggtgtag tgcaagaaac cttaaatatg gcaaatgttc gtggctataa agtaggaggc
     1981 actatccgta ttgtgatcaa caaccaaatc ggatttacca cctctaaccc aaatgacacc
     2041 cgctccaccg aattttgtac cgacattgcc aaaatgattc aggcaccgat tattcacgtt
     2101 aatggtgatg atccggaagc tgttgccttt gcagcgagaa tggctgtgga atatcgtact
     2161 aaatttaaac gtgatatttt tattgattta atctcttacc gtcgtcacgg tcataatgaa
     2221 gccgatgagc ctttagcaac tcagccaatg atgtatagca tcatcaaaaa acacccgaca
     2281 cctcgcaaag tctatgcgga tcgtttaatt accgaaggtg ttttaaccaa cgagcaagaa
     2341 atcgagatgt taaacctgta tcgtgatgcc ttagacaacg gcgaatgcgt tgtgccggaa
     2401 tggcgtgaaa tggatatggc agcggtcgat tggctacaat atctcaatta cgactggact
     2461 gccctatacg aaagtaaatt ccctgaagaa cgattcttaa ccattgccaa acgggtgtgc
     2521 gaatatccgg cttcgcttaa agctcattct cgggttgaaa agatctacac tgatcgcaaa
     2581 gagatgtatg aaggcaagaa attattcgac tggggtatgg ctgaaacaat ggcatacgct
     2641 actttgttag acgaaggcac acatgttcgc ctttcaggag aagatgccgg acgtggcact
     2701 ttcttccatc gccatgcggt aatccataac caaaatgatg gaacaggcta tgtgccactt
     2761 actcaactgc acgccaatca agggcgtttc caagtatggg attccgtact ctctgaagaa
     2821 gcggtactcg cctttgaata tggctttgcc actaccgacc cgaaaacact gaccatttgg
     2881 gaagctcaat ttggagattt cgctaacgga gctcaaattg ttatcgacca atttatcagc
     2941 tcaggcgaac aaaaatgggg cagaatgtgc ggtttagtga tgttattacc acacggctat
     3001 gaaggtcaag ggccggaaca ctcctctgcc cgagtggaac gctatttaca gctttgtgct
     3061 cagcaaaata ttcaagtttg cgtgccatca acaccggcac aggtttacca tatgttacgc
     3121 cgtcaagcga tccgcaaaat gcgtcgccca ttggttgcaa tcacaccaaa atcattgcta
     3181 cgccacccac ttgcggtgtc atctcttgat gaattgatta acggttcatt ccaaaatgtg
     3241 attggcgagc tcgataatat cgatcctaaa caagtcaaac gtgtggtgat gtgttcgggt
     3301 aaagtgtact acgacttaat tgaaaaacgc cgtgaaaata accaaacgga cgttgccatt
     3361 attcgtatcg aacagctcta cccgttccca cttgaagaaa tgcaacaaat tctcgagcct
     3421 tacgctcacg ttaaagactt tgtctggtgt caagaagagc cactaaacca aggtgcgtgg
     3481 tattgcagca agcacaattt tgaggcttct ctgccggaag atgcaaaatt aacttacgca
     3541 ggcagaccgg cttctgcttc accggcggtg ggttatccat cgttacacgc aaaacaacaa
     3601 aaacaacttg ttgaagatgc tttaacgatc gctgaataat aaaatgggcg tatatacgcc
     3661 ctacaagcgg ttcactttta accaaatttt acaatttacg ctgtcggagt tttaaaactc
     3721 tctcgaaaaa aggaataagt tatgaccatt gaaattttaa cccccgattt acccgaatct
     3781 gttgccgatg cgaccgttgc cacttggcat aaaaaagtgg gcgacaatgt aaaacgtgat
     3841 gaaattttag tcgaaattga aacagacaaa gtcgttttag aagtaccggc ttcaagcgat
     3901 ggtattcttg cagaaattac ccaagaacaa ggtgctactg ttgtatccaa gcaatctctg
     3961 ggtaaattag tagtagctaa agccggtgat attagctctg caactattga gcaaaaaaca
     4021 gaatccacgc catcagaccg caaacacgca gcaattgaaa acagccacgc gaacgctgat
     4081 gatcaagggc ctgcgattcg ccgtttatta gccgaacacg acttacaagc cgctgatatt
     4141 caaggcagtg gtgtaggcgg cagaatcacc cgcgaagata ttgaaaaaga gattgccaaa
     4201 cgagtgcaaa tcaaccaagt aaaagggtct gcaaccagcc aaaacaccgt tagcactgta
     4261 gcatttaaca gccgtagcga aaaacgtgtg ccgatgacac gactccgcaa acgtattgcc
     4321 gaacgcttac tagaggcaaa aaacaccact gcaatgctca ctacttttaa cgagctggat
     4381 atgcaaccaa ttatgaattt acgcaaaacc tatggcgaaa aattcgaaaa acaacacggt
     4441 gtgcgtttag gctttatgtc gttctacatt aaagccgtgg ttgaagcatt aaaacgctac
     4501 cctgaaatca atgcctccat tgatggcgat gatgtggttt atcataacta tttcgacatc
     4561 agcattgcgg tttctacccc acgaggctta gtcacacctg tgttgcgtga ttgcgacaaa
     4621 atgagtatgg cagatattga gaagaaaatt aaagaacttg ccgaaaaagg gcgtgacggc
     4681 aaattaaccg ttgaagactt aaccggcggt aactttacca tcaccaacgg cggggtattc
     4741 ggttcattaa tgtccacccc aattatcaac ccgccacaaa gtgcgatttt gggtatgcac
     4801 gctattaaag accgccctgt cgccattgac ggacaagtag tgatccgccc gatgatgtac
     4861 ctagccttaa gctatgacca ccgtttaatt gacggtaaag aatctgtcgg tttcttagtg
     4921 gcagttaaag agttattaga agacccaacc cgtcttcttt tggaaattta atcgaaaata
     4981 tgaccgcttg tacttttagc tacaagcggt ctgtttttaa taaaatttga caaaatccga
     5041 taaacgctct atttgagttc ccttctgagc cacctgagcg actttgaatt tgtaggaaaa
     5101 atttagtgtt tgagcttaca aggcaagcga gttataaatt tttccgtcaa gcaaattcaa
     5161 actaagcgaa gaaagtggcg aagcagggtg tgctttcttt tggttacttt tctttgcaca
     5221 agcaaagaaa agtaacataa aaaaaaccaa acgaggaaac tctatgaatc tacacgaata
     5281 tcaagcaaaa caaatattca aacaatacgg gcttcccgta agccaaggga ttgcttgcaa
     5341 aacggcagag gaagccgttg aggcaattaa acaactacaa ggtgaacaat gggcgataaa
     5401 gtgccaagtt cacgctggtg ggcgtggcaa agccggcggg gtgaaactgg ttcgcaatga
     5461 agccgaagtg cgtgaatttg ccgataaatg gctcggcaaa cgcttagtta ccttccaaac
     5521 cgatgctaat gggcaaccgg ttaatacctt atatttagaa gaaacctgca atatcgaccg
     5581 tgaattgtac ttaggtgcag tggttgatcg ctccgctcaa aaagtgattt ttatggcatc
     5641 aagtgccggt ggtatgaata ttgaagaagt agcggagaaa acccctgaat taattcacaa
     5701 agcggtaatt gacccactca ccggtgggca gggttatcaa gggcgtgaat tagcatttaa
     5761 attaggcttg aaaggtgatg aagttaaaca atttgcggat attttcgtga aactggctaa
     5821 cctatttgtt gaaaaagatt tagctttatt agaggtaaat ccacttgtca tcactaaaga
     5881 agggcaacta ctctgcttag atgcaaaaat gtcgattgac agcaatgctc tctaccgcca
     5941 cccagaactt aaagagttgc aagacccatc gcaagatgac gaacgtgaag ctgaagcgga
     6001 aaaatggaat ctcaactacg ttgcactaga tggcaatatc ggctgtatgg taaacggtgc
     6061 ggggctggca atggggacga tggatatcgt caaactttat ggtggtaaac cggctaactt
     6121 cttagacgtt ggcggtggtg caaccaaaga gcgtgtagca gcagctttta aattgatttt
     6181 atctgatccg aatgtgaaag ccgtgttagt caatattttt ggtggtatcg tccgctgcga
     6241 tttgattgct gatggcgtca ttgctgctgt aaacgaagtc ggcgtgaatg tgcctgttat
     6301 tgtgcgttta gaaggcacta atgccgcaca ggggcgtgag attttagcca atagcgggct
     6361 gagtattcta gcggcatcat cattaaaaca agcggctgaa ttagcggtaa aatctgcaaa
     6421 ttaggaggaa aaatgtcgat tttaattgat aaaaacacaa aagtaatttg ccaaggtttc
     6481 accggcggac aaggtacttt ccacagcgaa caagcccttg cttatggcac acaattagtc
     6541 ggcggagttt cgccgaataa aggtggcaca acccatttag gcttaccggt tttcaacacc
     6601 gtacgcgaag cggtagaagc aaccggtgca actgcaaccg ttatctacgt tccggctccc
     6661 ggctgtaaag atgctatttt agaagccatt gatgccggca tccaactaat tgtctgtatt
     6721 actgaaggca ttccaacctt ggatatgcta caagttaaac aacgtctaaa ccaaaccggc
     6781 gtgcgaatga tcggtccgaa ctgcccgggt gtgattaccc ctgatgagtg caaaatcggc
     6841 attatgccgg gcaatatcca caaaaaaggc aatatcggta ttgtttctcg ttcgggtact
     6901 ttaacctatg aagcagttaa acaaacaact gacgaaggct ttggtcaatc tacttgtgtc
     6961 ggtatcggtg gtgatccgat tccgggatct aactttattg acattttaaa actgttccaa
     7021 gacgatcctg aaactgaagc aattgtgatg attggtgaaa tcggcggctc tgccgaagaa
     7081 gaagcggcag ctttcatcaa agaaaatgtc accaagcctg tagtcagcta tattgccggt
     7141 gtcaccgcac caaaaggcaa acgaatggga cacgccggtg cgattatcag cggcggcaaa
     7201 ggaaccgccg atgaaaaatt caaaatcctt gaagatgccg gtgtgacaac cgtcagaagt
     7261 ttagccgaaa tcggttcagc tcttagaaaa attttaggct aaactaaaag ttcaagcagt
     7321 catatttacc catttttttg taaatatgac cgcttgtttt tttgctatta aattactctt
     7381 tcgatttcca aattaatggg tcaacacctt tatggataag gtcttgatgt tcttcaattc
     7441 taaacactgg ctctttgcca cttttcactt ggcgaagata gtcttttaaa ataatccaga
     7501 caatcggagc aagaattaag atagccacca agttaattac cgccattgat gccatcactg
     7561 tatcggcaaa tgcccataca atccctccgt ctcttactgc accgaagtac acaaagaata
     7621 aaacgatggc acggaatccc cacacaaacc acggactgtt tttaatgtag cggatattag
     7681 tttctgcata agcatagtta ccgataatgg atgtgaagca aaacagtaaa atcacaaatg
     7741 ctaaaaagtg taaaccaaat tcacctaaat ggaattgtaa cgcactttga gtaagtgaaa
     7801 tacctcttaa agtttcacca ccatagttat ttgacataag aatgatcact gcagtacaag
     7861 tacagactac aattgtatct acaaatacgc ccaacatttg aattaagcct tgacttgccg
     7921 ggtgtttcgc atcagaagtc gctgcagaat ttggtgcaga tcccatacca gcttcgtttg
     7981 agaataagcc acgtttaatc cccattagca tagttttgga taccaatgct ccaaacgttc
     8041 cacctgcagc agcagaaaaa tcaaaggcgc tttcaataat taaagagatt atacttggca
     8101 ctttttcaat attcatacct aaaataatta ctgcaataat caagtagaat aatgccatca
     8161 ttggaacaac ttgggcagaa actttaccaa tacgcttgac ccctccagaa ataattaacc
     8221 ctgtaatcac cactaatgtc atgcctacgt agactgggtt ccaatcccac gcatttttgg
     8281 ttgcttccac aatagagtta gattgcacag cattaaaagc aaaaccaaag gtgaagataa
     8341 gcgtcactgc aaaagcaata gcaagagaag gcagttttaa accacgagtg atgtaatagg
     8401 ctggcccacc acgaaacatt ccgtttggat ctttggtttt atacaactga gccagtgaag
     8461 actcagcaaa ggcggaactc attcccatta aggcggtaat ccacatccag aataccgcac
     8521 ccggcccacc caaagcgatt gcagtagcta ccccaccaat attaccaacc ccaacacggc
     8581 tggctaatcc agtagtaaag gcttggaacg gagttaatga tttcccttcc gtagaacgtc
     8641 ctccccacat ttcacgtaaa ctttgcggaa gaagacgcag ctggacaaaa cctgttgtaa
     8701 gagtgaaaaa taaccctgca ccgagcaata ggataatcgt tacatcccaa agtggaccgt
     8761 cgattgtgtt cacaatccaa gtcagtacac tctcaaaaaa tagaataatt gaatccataa
     8821 agacctc
//
LOCUS       DANLXB010000104         8807 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLXB010000104 DANLXB010000000
VERSION     DANLXB010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8807
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            58..1371
                     /gene="pilQ"
                     /locus_tag="PXD41_001655"
     CDS             58..1371
                     /gene="pilQ"
                     /locus_tag="PXD41_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL6289175.1"
                     /translation="MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNM
                     VLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPI
                     MNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
                     SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGH
                     YKFGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEI
                     IASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQIL
                     LDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPI
                     LGSIPFIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1452..1865
                     /gene="nusB"
                     /locus_tag="PXD41_001656"
     CDS             1452..1865
                     /gene="nusB"
                     /locus_tag="PXD41_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL6289176.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1928..2908
                     /gene="thiL"
                     /locus_tag="PXD41_001657"
     CDS             1928..2908
                     /gene="thiL"
                     /locus_tag="PXD41_001657"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL6289177.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2913..3386
                     /locus_tag="PXD41_001658"
     CDS             2913..3386
                     /locus_tag="PXD41_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL6289178.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3393..4016
                     /locus_tag="PXD41_001659"
     CDS             3393..4016
                     /locus_tag="PXD41_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL6289179.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4128..4733
                     /gene="ruvA"
                     /locus_tag="PXD41_001660"
     CDS             4128..4733
                     /gene="ruvA"
                     /locus_tag="PXD41_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL6289180.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4870..5874
                     /gene="ruvB"
                     /locus_tag="PXD41_001661"
     CDS             4870..5874
                     /gene="ruvB"
                     /locus_tag="PXD41_001661"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL6289181.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5973..6656)
                     /gene="artM"
                     /locus_tag="PXD41_001662"
     CDS             complement(5973..6656)
                     /gene="artM"
                     /locus_tag="PXD41_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL6289182.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6656..7327)
                     /gene="artQ"
                     /locus_tag="PXD41_001663"
     CDS             complement(6656..7327)
                     /gene="artQ"
                     /locus_tag="PXD41_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL6289183.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7327..8052)
                     /locus_tag="PXD41_001664"
     CDS             complement(7327..8052)
                     /locus_tag="PXD41_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL6289184.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8078..8806)
                     /gene="artP"
                     /locus_tag="PXD41_001665"
     CDS             complement(8078..8806)
                     /gene="artP"
                     /locus_tag="PXD41_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005697706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL6289185.1"
                     /translation="MRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTLIR
                     TLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQNLI
                     EAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQPQV
                     LLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGTII
                     EQGDASCFESPKTEQFAQYLSHSE"
BASE COUNT         2652 a         1873 c         1704 g         2578 t
ORIGIN      
        1 attaactaaa gattgtaata tcccttatga aattaacatc aaattataga ggttgatatg
       61 tggcgaattt ttatatattt cttatgcggt ttttcattag cctatgcgaa taccatttcc
      121 atagttttaa aaaatgctcc aacttcgctt atttttactt atttagcgga agaaaccggt
      181 aaaaatatgg tgcttgatga taatattgaa accaaatcaa cactacgatt agaaaataaa
      241 tcggttgacg agatttttaa aacgcttggc aaagtcaata aattatcctt aacgcaagaa
      301 gatgatattg tttatattca caaaaaagag gaaaaagcgg ctgacttaac gcctctgcca
      361 ataatgaatt tgcaaaataa tgggcaaaat acaccgcttg tcaccgcccc taagttaatc
      421 acaaaaacct tgaaactaca ttatgcaaag gcttcagagg tgattgagtc gttaaccaaa
      481 ggcagcggaa cgtttttatc ggaaaacggt tatattcact ttgatgaaag aagcaatagc
      541 ctgattgtga aagacagtgc aaaatcgctt aaaaatatcg agaatttagt aaaacagctc
      601 gaccaaccca ccgagcaaat tgcgattgag gctagaattg tcactatcag tagcgagcat
      661 ttgcaagagc ttggcgttcg ctggggaatt ttttctcgtg gggctgggca ctataaattt
      721 ggcggacggc tggaaggcaa tggactcaac aatgtcacca ataacttaaa tgtaaatttt
      781 ccgattactg gtggagcatc tgccgtatta caggtttcgt ccattaatag cagagtgctt
      841 gatttagaat taagtgcatt agaacaagaa aatagtgtgg aaattattgc cagcccacgc
      901 ctgttaacca ccaataaaaa gccggcaagt atcaagcaag gcacggaaat tccttatgtg
      961 atgtacaaca ccaaatcgga agccaccgat gtcgaattta aagaagcggt attagggctt
     1021 gaagtcgttc cacacctttc aacccaaaat caaattctac tcgatctgat cgttacccaa
     1081 aattcgccaa attcccaatc cggcagtagt ggcttaatta cgattgataa acaagagcta
     1141 aatacgcaag tatttgccaa acacggcgaa accattgtac ttggtggtat ttttcaacat
     1201 ttaacccaaa aaggcgaaga taaagtgccg attttaggct caattccctt catcaagcgg
     1261 ttatttagtc aaactcgaga taaaatcagc aaaagagagc tagtcatttt tgtgacgcct
     1321 tatatccttc aatctaatga aaagagcagc aaccgcaaaa aatcaaaata gcacatcata
     1381 aacgcaagca aaaatagggg aagtgtgata gaatcagccg tcattttttg agttaaagat
     1441 ttagaggttt tatgaaaatt tccccacgtc gccgtgcaag agaatgtgcg gtgcaagcca
     1501 tttattcttg gtatatttcc caaaacacgg ttgaagaagt ggaattggcg tttgtgaccg
     1561 atcaagatat gaaaggcgtt gatatgcctt atttccgtaa acttttccgt ggcgttgtgg
     1621 ataatgtaga agccattgat gaagcattac gcccttattt agatcgtaaa gagtcagatg
     1681 ttgatcctat tgaacgttct attttgcgtt tatcaactta cgaattaaaa tttgaacacg
     1741 atgtgccttt ccgtgtagtc atcaatgaag ggattgaagt cgctaaagtg ttcggctctg
     1801 atgacagcca caaatacatt aacggcattt tagataaatt agccccagca ttaggcagaa
     1861 aataataaga ttccccaatt tatacataaa ttggggattt tgattataac gctcaaggag
     1921 attttttatg ggtgaatttg atattatcga acgctatttt aatgcttctc aacgcccacc
     1981 tcgcaaagat gttttacttt ctatcggcga tgactgtgcg ctcacatcac tcaaaccaaa
     2041 tcagcaactt gcgatcacaa ccgataccct tgtttgcggc actcattttc taccgactat
     2101 ttcacctgcc gatctcgctt ataaaagtgt ggcgtccaat ttaagcgatc ttgccgcaat
     2161 gggtgcagaa cctgcatgga tctctttagc cttaacctta cctgaaatta atcacgattg
     2221 gctagctgaa tttagtgaac atttctttga gattcttgat cactataatg ttgatttgat
     2281 tggaggggat actacttgtg gaccactatc tttgacaatc acagctcaag ggattgtgcc
     2341 acaagataga ggcttattcc gccataatgc taaagtaggc gattggatct atgtttccgg
     2401 cacactcggt gacagtgcag gtggtttgca acttctgcta aatcagcaaa gcgagcaagt
     2461 gaattggaat aaagagcaaa gctacctgat tcaacgccat ttacgcccaa cacctcgagt
     2521 tttacttggc ttgactatcg cctctattgc taatgcagcg attgatattt cagatggtct
     2581 attgtctgat ttaagccata ttttaaagcg cagtgactgt ggtgcagtat taaaccttga
     2641 gaatttcccc ttgtctgacg tcttacttag ttgttattct cgaacagagg cagaatattt
     2701 tgccttaaac ggtggcgaag attacgaact ctgctttacc gtgccaaatg acaacaaagc
     2761 caaattagac aaagcattag ccaatatcgg agtaacttat acatgtattg ggcaaattcg
     2821 ttcggctaaa gaaggtttaa ccctattacg tcataatcag cctgtcacct tgccctcaca
     2881 acgaggctac gatcatttta aaaaataacg caatgaaacc aattaatctt aaaaatccga
     2941 ttcatttttt tgcctttggc tttggttcag gcttattaaa gcctgctccc ggcacctggg
     3001 gtagcctcgc cgggctaatt gtagcaatag ccttgtggtc tatcacacaa tccgccctgt
     3061 ttttcggctt actcacccta gtttctttta ttgccggttg tgttatttgc accaaagcca
     3121 gccaagatct agaagtacac gatgacgggc gaattgtttg ggacgaaata gttgccatct
     3181 ttttgatgtt cacctgtttg cctgaataca atcttcttgg ctacctgctc gcctttatca
     3241 gctttcgcat ttttgatatt ttgaagcctt ttccaatccg ctattttgat gaaaaattag
     3301 aaagcggttt aggcattatg tttgatgata ttctcgcagc catttttgcc ctgatttcac
     3361 ttcatctttt atattatttc atttaaaaat ttatgctcac tattttattt attcattttg
     3421 ccgggcttat cagccccggc cccgatttct tctatgtcgt cagacaatcc gccagccact
     3481 cagttaaaag tggggtactt gccgcaaccg gaatctcaat cggcattatt ttttgggcag
     3541 cctttgcgat ttttggttta gcgtggctca gtaatagtat tggctcgctg tttcaatatg
     3601 ccattatgat tatcggtggc tgttacctgg tttatattgg ctctcaaatg gtacgggtaa
     3661 ccgaaaatat catttttgtt gaaaataaag ctcaactcac gccgctaaac ccttggcagg
     3721 aaattaaaaa aggcttatta atcaatatct ttaatgccaa agctggcgtt tactttacca
     3781 gcgtcatttc agcctatgta gataatttaa gcaataccct acaaatgttc gaactacttc
     3841 tactctttgt ggtaagtacc tttatttatt tctgtgtggt ggcactactc ttttctcgcc
     3901 gaccggtcag actgttctat gccaaatata gtcgctatat tgacaatatc tcaggcgtaa
     3961 ttttcatctt attcggctcg atgctgattt atgaaggatt cagccacttt atctaatcac
     4021 aagcggtctg atttcactaa aaatttgcaa attccgctat caataaatag tgttatttta
     4081 tacagtttct gctatgctac tgccaatttt aactctgaga gaacaaaatg attggacgat
     4141 tacacggcaa aattattgaa aagcaaccgc ctgaaatttt attagacgtg caaggggtag
     4201 gctatgaact actgctcccg atgaccagtt tctacagcct gccacaaatt ggcgaagagg
     4261 cgactatttt cacccattta gtggtgcgag aagatgctca cttgctattc ggctttgccc
     4321 aaaaacaaga tagaactcta ttccgtgaat taattaaaac caacggtgtc gggccgaagc
     4381 tcgcgttggc aattctatca gcaatgtcgg tgtcgcaatt tgccaccgcg attgaaaatg
     4441 aagagctggc aaaattaacc aaaattccgg gaatcggtcg gaaaaccgca gaacgcttat
     4501 tggtggaact caaaggcaaa tttaaaggaa tggcacagag tgatttcttt gtggaagtat
     4561 cgcacgagca aattgtggca agtaatacgc cagacccggc aaatgaagcc cttgatgcct
     4621 taatagccct aggctacaaa cctgccgatg cggaaaaaat gattaagaaa gtgaataaat
     4681 ccggtgcaac gagcgaacag cttattcgtg aggcgttaaa aaattcatta tgatattgat
     4741 agtatagggc gaaagatatt tcgcccctac aatctcattt ttaaaaatat atgtgtaggg
     4801 gcaaatcaat atttgccctc atgagtaata tagggtaata ccattccact acaacaataa
     4861 tctaaatgta tgattgaagc agatagaatc atcagtgcct cgcctaagcg tgaggaagaa
     4921 gttatagacc gagcaatccg cccgaaactg cttgccgact atgtcgggca gccttctgtg
     4981 catgatcaaa tggagatctt catcaaagcc gctaaattgc gggaagaggc attagatcac
     5041 ttgctcattt tcggcccgcc cggtttggga aaaactaccc ttgccaacat tgtggcaaac
     5101 gaaatggggg tgaatattcg cacaacttca gggccggtgc tggaaaaagc aggcgatttg
     5161 gcagcaatgc tgaccaacct tgaaccttac gatgtgctgt ttattgatga gattcaccgc
     5221 ctttctccag cgattgaaga agtgctttat cctgcaatgg aagattacca gctcgatatt
     5281 atgattgggg aaggacctgc tgctcgttcc atcaagctcg atctaccgcc ttttaccctt
     5341 gtaggggcaa ccacccgtgc cggctcactg acctcaccgt tacgagatcg ttttgggatt
     5401 gtacaacgct tagaatttta ctcagtggac gatcttactc tgattgtcaa acgcagcgcc
     5461 gattgcttaa atctcaattt gtcggcagac ggtgcttatg aagtggctcg ccgctcccgt
     5521 ggcacacccc gtattgccaa ccgcttactc cgccgagttc gggattacgc cgatgtgcgt
     5581 aataatggca ttattacctc agacattgcc aaacaagctc tggcaatgct cgatgtggat
     5641 tcggaaggct ttgattttat ggacattaaa ctgttgcaag cgattgtaga acgctttgat
     5701 ggcgggccag ttggattaga caatcttgcg gcagctatcg gcgaagaacg agatacgatt
     5761 gaagatgtgc tagagcctta tctgattcag caaggctttc tacaacgcac accaagaggc
     5821 agaattgcta ccagcagaac ctatgcccat ttaggtataa cccaaataga ttagtcatat
     5881 ttctaaaggc attgatacat aaataaaaag cggatagtta gtactatccg ctttcatttg
     5941 caaaaaatca ataaaatttg accgcttatc cgctaggctt tttcagtctc aaaacgctca
     6001 aaagctaata ctctgctttc taattttctg agaacgattg tcataatgcc ggtaattacc
     6061 aagtaaataa cccctgccat accataaatt gataatgcgt catactctgt accataaagc
     6121 tggcgagcat agcccataat atccataatc gtaatggttg aagcaagcga tgtgccttta
     6181 aaaactagca caatctcatt actataagaa ggtaaagcac gttttaatgc gtaaggcact
     6241 aaaattttca gtgtatctaa acggctcaaa ccaagggctg cgcaagtttc ccattgcccc
     6301 ttcggaatcg cttttaccgc accgtggaac aacaatgtcg aataggcagc actgtttaac
     6361 gctaaagcca acattgcaca gaaccaagcg tcggataata atacccaagc cgcactttct
     6421 gtaatccatt caaattgccc cgggccacta taaatcaaga aaaattgaat taataaaggc
     6481 gttccggtaa aaagcgtaat aaatccgttt accaaccact ttaacggacg attttctaac
     6541 gagagaataa acgtaagaat gatcgctaaa ataaaggcaa tgatgagcgc cacaaaagtg
     6601 agctgtaggc tggtgccaat accctgtgaa atttcaacta aataatccca ccacattaag
     6661 caactcctcg ctcaaaacgg gtaaatctac cttctaatac tttaatcact cgctggctaa
     6721 ttagagtaat cgctaaataa ataagtgctg ctatcccata ccaagtaaaa ggttgatgag
     6781 tattagcatt aattaactcc gattgacgca ttaaatcatc taccccaatt aacgatacca
     6841 atgccgtatc ttttaacagc actaaccact gattgcttaa gcctggtaaa gcgtgtcgcc
     6901 agacttgagg gagaataatg cgaacaaata cttgcgctcg gcttaaccct aacgccgtac
     6961 cagattccca ctgcccaact ggaatagctt taattgcacc acgtaaagat tgggaagcat
     7021 aagcagcaaa aataataccc agcgcaatag ccccacacca gaaagcattt aactccgcaa
     7081 actcatcggt gatcaagaaa ataacttgga taagaccaaa atagatcaaa aataccacta
     7141 aaatctccgg caacccacgc aataatgtaa ttattatact agttggttta cggatacatg
     7201 caatcttact ggtttcaagt accacaaaaa agattgacaa taacattcca atcaagaggc
     7261 ttgccagcgc aatccctaag gtcatcaggg ttgcgttgac aagtaagttt aaaatatcgc
     7321 tagacattat ttcccagcca tccaagtatt ataaatttgc tcatatttac catttgtttt
     7381 gatggtagct aaagccgaat ttaatttttc aagcaatgca gtgttagatt tatttaccgc
     7441 aataccatat ccattaccaa aaaaggcttt atcgactact ttttcaccca cgaaatctaa
     7501 ctctttttcg gtttttagcc actctgccaa tactggtgta tcaccaaata ccatatcaac
     7561 acgtccattt tttaaatcta acactgctga ttgtaggcta gcgtaaggtt ttaaattata
     7621 ttgtttggca tttttgctta agtattgttg aaaagttgta ccattttgca cgccgacatt
     7681 cttagctgtt tccggtgtaa atttcccctt cattgcgaca taacttactg agttttctaa
     7741 ataagcattg gtaaaggcaa cctgtttttg acgcgcttca gtaatatcca tgcctgaaat
     7801 aattgcatca aaatttttaa attttaatcc cgcaattaag ctatcgaatg attgcgtttt
     7861 aaattcgcaa gttgctttta gttcttcaca taatgctttt gcaatatcta catcaaagcc
     7921 aataacttca cctttttcat ttgttgtttc aaaaggggcg taagaaggct ccatcgcaaa
     7981 agtgatagtt tcttgtgcat tggcagaaag cgttgcaaat gcgatagcgg aagctaataa
     8041 taattttttc attgttgtgt ccttttgttg ttatagatta ctctgagtga gataaatatt
     8101 gagcaaattg ctctgttttc ggtgattcaa aacaacttgc atcaccttgt tcaataattg
     8161 tacctttttc catgtacacc actttgcttg ccaccttacg agcaacgcct acttcgtgag
     8221 tcacaatcac ctgagtaatg cctgtagatt gcaattcttt aataatatca actacttgtg
     8281 cagtaatttc cgggtcaagt gctgcggtag gttcatcaaa taataagacc tgtggctgca
     8341 tcatcagtgc tctggcaatc gccacccgtt gttgctgacc acctgaaaga tgcagtggga
     8401 aacgctcggc aaactcgctc aaacgcaaac gtgccaaatg tccttttgct ctggcaaccg
     8461 cttcttcttt gcttaaccca agcactttca tcggggcttc aattaagttt tgcattacgg
     8521 ttaaatgcgg ccataaatga tactgctgga acaccattcc cacctcacgg cgtaacaaac
     8581 tcaccgcttt gctgtcggtt ttagcagtta aatcaaattg atgatttgca atcgccaaag
     8641 tgcctgattg cggtacttcc attaagttta aggttcgaat tagggtactt ttacctgccc
     8701 cactcgggcc aagcaataca acagtatccc ctttttcaat ctctaagtta atgtcaaata
     8761 aggcttggtt tgagccataa aaaaaattga cattttgaat acgaatt
//
LOCUS       DANLXB010000105         8710 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLXB010000105 DANLXB010000000
VERSION     DANLXB010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8710
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            106..822
                     /locus_tag="PXD41_001666"
     CDS             106..822
                     /locus_tag="PXD41_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6289186.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
     gene            complement(892..1770)
                     /locus_tag="PXD41_001667"
     CDS             complement(892..1770)
                     /locus_tag="PXD41_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL6289187.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(1846..3171)
                     /gene="hslU"
                     /locus_tag="PXD41_001668"
     CDS             complement(1846..3171)
                     /gene="hslU"
                     /locus_tag="PXD41_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL6289188.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            complement(3428..3949)
                     /gene="hslV"
                     /locus_tag="PXD41_001669"
     CDS             complement(3428..3949)
                     /gene="hslV"
                     /locus_tag="PXD41_001669"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL6289189.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            complement(4010..4723)
                     /gene="sfsA"
                     /locus_tag="PXD41_001670"
     CDS             complement(4010..4723)
                     /gene="sfsA"
                     /locus_tag="PXD41_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL6289190.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            complement(4739..5608)
                     /locus_tag="PXD41_001671"
     CDS             complement(4739..5608)
                     /locus_tag="PXD41_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6289191.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            complement(5609..6001)
                     /locus_tag="PXD41_001672"
     CDS             complement(5609..6001)
                     /locus_tag="PXD41_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6289192.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            6085..7230
                     /gene="mutY"
                     /locus_tag="PXD41_001673"
     CDS             6085..7230
                     /gene="mutY"
                     /locus_tag="PXD41_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL6289193.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            7234..7503
                     /locus_tag="PXD41_001674"
     CDS             7234..7503
                     /locus_tag="PXD41_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL6289194.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            7520..8611
                     /gene="mltC"
                     /locus_tag="PXD41_001675"
     CDS             7520..8611
                     /gene="mltC"
                     /locus_tag="PXD41_001675"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL6289195.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
BASE COUNT         2535 a         1756 c         1839 g         2580 t
ORIGIN      
        1 atgtgtttgt atgacataaa acaaacttta tgaaaagaag acttttttta agaaagtaac
       61 tgcgttaaag tggtaatcct tataatgaaa acacagggac tttttatgaa aaaaacactt
      121 ttgacccttt tattcgggtg tgtggttact gcgcaggcac aagatatcaa atttgtgatg
      181 gagccaagct atcctccatt tgaaatgacc gaagagaagg gagaaattat cggttttgat
      241 gtggatattg caaatgctat ctgtaaagag atgaatgcaa attgtacatt ccatagccaa
      301 ccttttgata gcttaatcca aagcctaaaa caaaaacaat ttgatgctgc aatttcaggt
      361 atgggtatta cggaaccacg taagaaacaa gtattattta gcgagcctta ctttccaagc
      421 tctgctgcct tcattgcgaa aaaagataca gattttgcta aggtgaaaac gattggtgtg
      481 caaaatggga ctacttacca acactattta gcaaaagaga aaaaagagta caatgtgaaa
      541 tcttatgcct cttatcaaaa tgctatttta gatgtgcaaa atgggcgaat tgatgctatt
      601 tttggcgatg tgccggtatt ggctgagatg gcaagaaaac acgaagggct agattttgta
      661 ggggagaaaa tcaataatcc aaactatttt ggtgatggtt taggcattgc aactcacttg
      721 aaaaaccaag tattagttga tcaattcaat gcagcattaa aaacgattaa agagaatggc
      781 gaatatcaaa aaatctatga taaatggatg ggcggcaagt aacttgtaag cggtcatttt
      841 ttgcaaagtt ttgcaaagtt ttgcagattt tgaccgcttg tattctttga tttacccatt
      901 taagccagta taagttttaa gcataagctc catggtctgc tttaaattag ctagcatttc
      961 ataacgcttg cgatacattg agcgtttttt gcttggaatt tcatctattt ttttactttc
     1021 caattcaagg ggtaactgcc aataatttcc cggctttccg cccgattccg caaaaatagc
     1081 atcataatcc actacatagc gcttactttg cacccagcgg gatttattct ggtatttctg
     1141 tggaatgcct agtaaactct gatagccaag aacagccgtt aaagccttca tcgtttcaac
     1201 cattaaatag gccgggcgta agccgtggca acttttggtt aattgtttca ccagctcttt
     1261 tgaaccttca aaattcggac cttgaattac ggctatcaac aaggcttcat ctaacttacc
     1321 aaatgttaat aaataaacta gctgattagt cggtctgtgg cgaagttcta atgcccaaaa
     1381 accttccatc ggctgatgtt cattgatgtt aagccataac tcaaaatctg caataatttc
     1441 accaaaattg accgcttgtt cccatagagg tggtaaatga gccaattttt gcggtaaaaa
     1501 cagcaggtta tctgtgattt tttgtaagcg ttgttttgca ctgaaacgct tatctaaaaa
     1561 gcggtgagcc acggggtagc tgtaatttgg tcgagcattt aagagcggaa tcagttgtgg
     1621 attttgtgta acgaactgct caaattgctt gattttggaa tgatgcaacc aagagcgaag
     1681 acggtaacga aaacgtttcc ctgcgtaaga cttctttccc tgatttggat aaagcgattg
     1741 tgcagcaggc catttgtata gatttttcat ttttacaact aacaatatga aaagcggcta
     1801 attcgcaaga tttttcgcta aaataaccgc ttgtataact taaaactaca aaataaagcg
     1861 acttaaatct tcgttttcca ccacgtcatt taacgcttcg gaaacatagt tttcatcaat
     1921 gatgattttt tcaccacggc gttcgctggc atcgaacgaa atgccgtcca tcaaacgctc
     1981 aagcacggtg tgtaaacgtc ttgccccgat gttttcggtt ttctcgttca cacggaatgc
     2041 actttctgca atacggctga taccgtcttt agtgaactca atctccacgc cttcagtttt
     2101 catcaactca cgatattgca aggttaatga ggcattcggt tcggttaaaa tacgctcaaa
     2161 atcttctttg gtaagcgatt ttaactccac acgaatcggc aagcgaccct gtaattctgg
     2221 gagtaaatca gacgggcgag ccacttggaa tgcccccgag cagataaaca gaatatggtc
     2281 ggttttcacc ataccatgct tggtatttac cgttgagcct tcaatgattg gaagtaaatc
     2341 acgctgaaca ccttcacgag aaacatctcc acccgaatgc tcgccttttt tacagatttt
     2401 gtcgatctca tcaataaaga caataccgtg ctgttccacc gcttcaatcg cttgctgttt
     2461 cagctcttca ggatttacta atttcgccgc ttcttcatca agcatcacct ttaacgcatc
     2521 tttgattttc attttgcgtt ttttggtttt gcttggcgac attccctcaa acagcgattg
     2581 taattgcgag gtcatctctt ccattcccgg cggggtcata atctcaacgc tcacttgagc
     2641 tgccacgtca atttcaatct ctttatcgtc taattgccct tcacgcaatt ttttgcggaa
     2701 agtttggcgg gtagaattat tgtcggattc ctgcacattt ccccactgat ctttcgccgg
     2761 tggcaataat acgtctaaaa tgcgatcttc cgctgcatct tgtgcacgca ttttattttt
     2821 ttcgaccgct tgttggcgga ctaatttcat cgacacatca gctagatcac ggataatcga
     2881 atccacttct ttacccacat accccacttc agtgaatttg gttgcctcaa ctttgataaa
     2941 aggggcattg gcaagcttcg ccaaacggcg ggcgatttcg gttttaccca caccggtcgg
     3001 accgatcatt aaaatatttt tgggggtcac ttcttggcgg agatcttccg gcaactgcat
     3061 tcttctccag cggttacgca aagcaattgc taccgcacgt tttgcatctt tttgtccgat
     3121 aatgtgtgcg tctaattctg agacgatttc acggggtgtc attgacataa tgttattcct
     3181 taaattaatt accctctccc cttgtgggag agggacagat ttttctttgt tcagaagaaa
     3241 aatcagggag agggtaacaa gcggtctttt ttcttaaacg ttttgcatta acccctctct
     3301 ctgaaaaata tttctgaacg aaatattttt cggtctcaat actcgctacg ctcgctcctg
     3361 tggagccgtt ggcaaagcca acgttcaaat gtaaacattt gtcccacaag gggagagagt
     3421 tatttaacta aacttcttca atcacgtgat tgtagttact gtaaatatca atatcgccgg
     3481 cgatttttaa cgcttccgca acgatttctt ttgcagataa attattttcg gtgcgtaata
     3541 acgcaagagc agcggctttc gcatagttac cgcctgaacc aatcgccagc acatcttgct
     3601 ccggctcaat cacatcgccc gaacctgaaa ccaataaaaa ctcgctgtca ttggcgacaa
     3661 tcatcatcgc ttctaaacgg cgtaaagcac gctcggtacg ccactctttt gccagttcca
     3721 ctgccgattt cactaaatgc ccttggtgta actccaattt tttctcgaat aaatcacgca
     3781 aaataaaggc atcagcggtc gagccggcaa agcctgtcac cactttgtct ttatacaaac
     3841 ggcgaacttt ccgcaccgtg cctttctcga tacaatttcc aagcgttgcc tgaccatcac
     3901 caccgatagc cacttttccg tctttacgca cgcatacaat cgttgtcata ctaaatcctt
     3961 ctttttaaaa actttggctt atatggggat atgctgtgtg ttttcaagct taaaactcac
     4021 atttctttgt taaggttgcc gcaataggtt gcccgttttc caatgaaatt gccattttat
     4081 aggagagaac ctgcactttt tgtgcaatgg cttgagcgaa taattcggca tatttggggt
     4141 ctatctgctt tgccacttca aaccgttcaa tacctgtgtg caaaatagcg aaaaaaatga
     4201 ccgcttgtaa gccctgttca gcgattttcg tcagctcccg caaatgtttt tgcccccgct
     4261 cggttttggc atcggggaac attcccacac cgttttcggt taaaagggtg gtagatttca
     4321 cttccacaaa acaatccggc agaaggtccg atttgagcaa aaaatcaatc cgactgtttt
     4381 cactgccata tttttgttca ggcagaatgt gctgataatc cgcaagctcg ctaatccatt
     4441 gattttccaa ggcttcttgt acaagctgat tggctctcaa ggtattgaca caaataaaat
     4501 cccccgcttg ggtttgggtt agttcccaag tgtgagcata tttacgtttg gggttatgag
     4561 aggtggaaaa ccaaactgta tcaccggggt tggcacagcc tgtcatcgca ccggtatttg
     4621 ggcaatggag ggtaatttgt tcgccatttg gcaactgaat atcggcaaga aaacgtttat
     4681 aacggcgaag taaaatgccg tgggaaagag ggggaaattt catttgcaaa aaatcctgtt
     4741 aaattaaccg cttgtatctt ttcatcatcg gtagcaaaac ggagagtaag gcggtgcaaa
     4801 taacaataat aatcccaacc caagtcacta aactgagctg ttctgataaa aagaccaatg
     4861 ccattagcag tccgaatacc ggttcaagtg cgagtagaat acctgcaaga ataggcgaag
     4921 attggctgat gcctttgttc cataacaata ttgccaagct ggtacaaata atgcctaaat
     4981 atgctacgct cgcccatgct gagagactgg ttggcagttg ccaattttct gcaaagagta
     5041 aggtaatagg taaggcggta attgcccctt gcaccagcat gatcttggtt aaatcgatca
     5101 cttttactga ttgcagaatc tctttgctga ggtacattcc cacaataaaa cttaaactgc
     5161 ctaaggttac aagcaataat cctaatacat tgattgaacc gctatcatcg ctacccgatg
     5221 ccataattaa aatccccaag caggcaaata aacttaggat aaaatcgagc ctggttgcct
     5281 gttttttgaa acaaaaatag ccgactaaca cagttaaaag cgggtttagc ccgagtagtg
     5341 ccacggcact tgctgcggaa gttaatttca agccggaaaa ttgtaagatc acgtacagag
     5401 gaaaagtgag aaaactaatc agccagactt taatgtgctg atttttctgg atttttttat
     5461 acgcaggaat aaaaaacggc agagcgataa acgccgctaa cgtcagccga atttgcataa
     5521 tttggacagg gtcaaaggct gaaatcgcca ctttacctac aatgaatgaa ctcgcccaaa
     5581 tcagggttgc aatcagtaaa tataacattt agacctcgta aaactctaac ggcagatcgt
     5641 ccggatctcg gaaaaacgtg aagcgtttgc cggtgatctc atcaattcgg atcccttcat
     5701 gcggtaattg atgttgttct aaaaatgcga tggcatattc aatattttcc actcgaaatg
     5761 ccaaatggcg aagcccgcag gtttcgggcg aggtgaaacg aggcggcgtt tcaggaaaac
     5821 tgaataattc aatttgtgag ccatctttaa agcgtaaatc taatttatag ctggcacgtt
     5881 gctctcggta ggtttctgcg atgatctctg cccctaaaat gcgggtgtag aaatgtttgg
     5941 atttttcgta atcggaaaca attaatgcaa tgtggtggaa acctaaaatg ggcgatttca
     6001 tcttttttcc ttaatgtgta aaatttttgg taaaactgac cgcttgcagt atgataattt
     6061 atttttcgga tttcaagatt tttaatgaac agcaattccc catttccttt agcgaaagca
     6121 aaagcttctg atccgtttgc caaagctgtt ttagcttggt ttgagcaata tgggcggaaa
     6181 catttacctt ggcagcaaaa taaaacgctg tatcaggttt ggttgtcgga ggtaatgttg
     6241 caacaaactc aagtagcgac cgttattcct tattttgcac gttttatgga acgatttccc
     6301 accgtaattg acttagctaa tgcctcgatt gatgaagtat tgcatttgtg gacagggctg
     6361 ggttattacg ctcgggcaag aaatttgcat aaagcggcaa ttcaaattcg agatgagttt
     6421 ggcggtgaat ttcctacccg atttgatgat gtgttggcat taaccggagt gggcagaagt
     6481 actgcagggg cgattttgtc ttctgtgtta gatgccccac acccgatttt agatggcaat
     6541 gtcaaacggg tgttaagccg ctattttgca gtagaaggct gggcgggtga aaaagcggtg
     6601 gaaaatcgcc tttggcaatt aagcgaaagt gtgacgcctg atacccaagt ggcagacttt
     6661 aaccaagcga tgatggattt aggggcgatg atttgcaccc gtacaaagcc taagtgcttg
     6721 ctctgcccgc tacaagaaaa ttgtaaaacg aatgcaatgc aagcgtggga tagctttcct
     6781 gccaagaaac cgaaaaaaac cttgccggag cgtcaaacct attttttagt gctgaaaagc
     6841 ggctcgaaag tgctgttaca aaaacgggaa gcaaaaggca tttggggggg cttatttgtg
     6901 tttccgcaat ttgagagctt agaggctctc aagcggtctg attttatgca aaatttgcaa
     6961 atttcacagc aattaactgc atttaggcat acttttagcc attttcattt ggatattacc
     7021 ccggttttag tagaaaccga tttgaaaaaa acaagtgaaa attcaccgct tgttgtcgaa
     7081 gaaaaagcag gaaattatct ttctaaggta tcttcaaatg cggattattg gtatgatttg
     7141 caccaacata acgaagtggg tttagcaacg ccggttaaac gtattttaga tgagctggca
     7201 ttcagtgtga aaaatgagat taaggattaa attatggctc gtaccgtatt ttgcgaatat
     7261 ttaaaacaag aggcagaagg tttagatttt caactttatc cgggggagct gggtaagcgt
     7321 atttttgact caatcagcaa gcaagcgtgg tctgagtgga ttaaaaaaca gacaatgatc
     7381 gtcaatgaga aaaaactcag tatgatgaac cccgaacacc gtaaactgct cgaacaagag
     7441 atggtcaatt ttttatttga aggtaaagag atcatcatcg aaggctataa gccggtcgaa
     7501 taataaaggt taaatcacaa tgaaaaaata tgctaaatat ttgccgatgt tggcaattat
     7561 tccgtttctt attgcttgtg ggagcaataa atcgactaag aagccaaaat ctacccgagt
     7621 agattattct aaagatacca atggtttgga tattttggca gggcagtttt ctcacaatat
     7681 tgatgatatt tggggaagta acgagctgtt agttgccagt aagaaagatt atgtgaaata
     7741 tacggataag ttttacaccc gtagccatat ttcgtttgaa gaaggggtga ttacgattga
     7801 gactttaggg aatcagaatc atctacgcaa ttcgattatt catactttat taatgggcag
     7861 agacccgaaa gggattgatt tatttgcctc aggcgatgca ccgattagct ctaacccttt
     7921 cctaaacgga caggttgaag atcaattcgg gcgaaatatt accaatgttg ccatcgccaa
     7981 tgattttgcg acttatttgt tgcaaaataa ggtgcaaaca cgccgtttga aaaatggtca
     8041 aactgtgagc tttgtaacga ttaaaatggt ggcaggacac attgaagtac gtgccagaca
     8101 atatttaccg ctggtgcgta aaatggcgaa gcagtatggt attgagccaa gtttgatttt
     8161 agggattatg gaagtcgaat cagcattcaa cccttatgcc atcagctatg ccaatgcgat
     8221 tggcttaatg caggttgtac ctcgtaccgc cgggcgtgat atttttgccc gtaaaggtat
     8281 gggagggcag ccaagtcgtg aatatcttta taatccatca aataacattg atgcaggtac
     8341 gctttatttg actattttgc gtgatgaata cttagatgga attgaagatc ctgtggctaa
     8401 acgctatgca atgatttctg catacaatag cggagcaggt gcggtattac gagtgtttga
     8461 ttcagaccga tactctgcga ttgatagaat taacgatctt tcgtctgatg cggtttatcg
     8521 aattttaacc actgctcatc catcttctca agctagaaat tatttaagaa aagtaaccac
     8581 cgccagagag aaatatcgca atattcgtta atgtgtgaat tatgctgttt tttagccgaa
     8641 aagtataaaa aaagcacatt tgagcagcgg tttttttaaa tttgcaaaaa aacgtttgac
     8701 gttgcaagct
//
LOCUS       DANLXB010000106         8617 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLXB010000106 DANLXB010000000
VERSION     DANLXB010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8617
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            46..315
                     /locus_tag="PXD41_001676"
     CDS             46..315
                     /locus_tag="PXD41_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6289196.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            328..1678
                     /locus_tag="PXD41_001677"
                     /pseudo
     CDS             328..1678
                     /locus_tag="PXD41_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(1773..2921)
                     /gene="dprA"
                     /locus_tag="PXD41_001678"
     CDS             complement(1773..2921)
                     /gene="dprA"
                     /locus_tag="PXD41_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL6289197.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            3010..3522
                     /gene="def"
                     /locus_tag="PXD41_001679"
     CDS             3010..3522
                     /gene="def"
                     /locus_tag="PXD41_001679"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL6289198.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            3616..4542
                     /gene="rfaD"
                     /locus_tag="PXD41_001680"
     CDS             3616..4542
                     /gene="rfaD"
                     /locus_tag="PXD41_001680"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL6289199.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(4610..5140)
                     /gene="fabA"
                     /locus_tag="PXD41_001681"
     CDS             complement(4610..5140)
                     /gene="fabA"
                     /locus_tag="PXD41_001681"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL6289200.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(5253..6890)
                     /locus_tag="PXD41_001682"
     CDS             complement(5253..6890)
                     /locus_tag="PXD41_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6289201.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            6983..7429
                     /gene="matP"
                     /locus_tag="PXD41_001683"
     CDS             6983..7429
                     /gene="matP"
                     /locus_tag="PXD41_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL6289202.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            complement(7495..>8617)
                     /gene="ompA"
                     /locus_tag="PXD41_001684"
     CDS             complement(7495..>8617)
                     /gene="ompA"
                     /locus_tag="PXD41_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL6289203.1"
                     /translation="VALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQFDNTYD
                     YGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTTFSGDD
                     KEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSRIKVHN
                     LKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQYSPDI
                     HSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDAAHAEI
                     SNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAVGYGEA
                     NPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT         2595 a         1786 c         1648 g         2588 t
ORIGIN      
        1 tcaaaattca gacaactatt cattcacctt taatggagat ttactatgaa aattatggca
       61 gtatgtggtt ccggcttagg tagcagcttt atgatggaaa tgaacattaa aaaagtattg
      121 gcaaaactcg gtgtcgaagc ggaagtgagt cataccgacc tttcctctgt tgttgctgat
      181 gatgctgatt tatttgtgat ggcaaaagat attgccgcaa gcagcaatgt gccgaaagaa
      241 aaactcatcg tggtaaaaaa cattgttgga ttagcagaat tcgaagaaaa attgaccgct
      301 tactttaacc aataacggag atgttatatg gaatcgctac tcttttttat attagatatt
      361 ctcaaagtgc cttccgttct agtgggttta attgctctgg tcggtttagt tgcacagaaa
      421 aaatcggtat ccgatattgt taaaggaaca atcaaaacta ttttaggctt cttagtgtta
      481 agcggtggtg caacagtact tttaagctcc ctgactcctt taggcggtat gtttgaacac
      541 gccttcaacg tgcaaggcat tatccctaat aacgaagcga ttgtgtctat ggcaatcgaa
      601 aaatatggta cggcgactgc gttaattatg gcattcggta tggtagccaa tattttaatt
      661 gcacgtttta cccgcctaaa attcattttc ttaaccggac accatacctt ctatatggcg
      721 tgtatgatcg gcgtaatcct aaccgttgcc ggctttgaag gtattcagct cgtctttgtc
      781 ggggcattaa ccttagggtt aattatgttt cccgactatc gctcacttct atatgaaaaa
      841 agtgaccgct agcaatgatg ttgccttagg tcatttcggc acattgggct acgtgcttgc
      901 tggttcaatc gggcaactgg taggaaaagg ctctaaatct accgaagaaa tggatttacc
      961 taaaaacctc ggcttcttac gtgatagctc catttctatt tcactcacga tgatggcgat
     1021 ttactatatt ctcgcccttg cttcgggcag tgaatacgtt tctacattaa gcggcggaca
     1081 acattattta gtgtatgcca ccattcaagc catcactttt gcagccggtg tttatgtcat
     1141 tttgcaaggg gttcgtttaa ttttagccga gatcgtcccg gcatttaccg gcttctccga
     1201 aaaattagta cctgatgcca aaccggctct cgactgcccg attgttttcc cttacgcccc
     1261 caatgcggta ttagttggat ttcttgccag tttcttaggt gggattttaa gcttagccat
     1321 tctagggcaa cttaattggg tgttaatttt accgggcgta gtgccacact tcttctgtgg
     1381 ggcaactgcc ggcgtatttg ggaacgccac cggcgggcgt cgtggtgcaa ttatcggtgc
     1441 ttttattcac ggcatattaa ttaccttctt gcctgtattc ttattacctg tactgggttc
     1501 attaggcttt gctaacacca ctttctctga ctcagacttc ggcggtattg ggattgtgtt
     1561 aggctatatg gctcaatact tcgacaagaa tatcattacg ctcattattg tcggcttatt
     1621 cgctctgttg gtagcctata attatttggc gaaaaaaccg gcaaaactga atacctaatt
     1681 aaaatcaggt gttatttgct gcctgcgagg aatcttccct gccatttctt gatggtaggg
     1741 aattttgttt agttaaacga caacgctctt gttcaatacc cattatccat cacatacccc
     1801 ccactcactt gtttaatcac accggctaat tccagaccca gtaattcaac cagcaatatt
     1861 tcaatcgtca actccgtaac tttggctaaa tcatcaattg ccatcggctc taagctgata
     1921 tgctgataaa tttgctgctg gcaagcggtc agacttggca gattttttgc gaatttttcg
     1981 ctgtttttga ccgcttgtaa agatgtgctt actgttggct tagactcatc aaacaaaggg
     2041 atttgctgag gttgatattg cgaggcgacc acctctaaaa tatcttccac accttccacg
     2101 agcaatgccc cttctttaat tagcttgtgg caaccttgtg cgtaagggtt ttgtaccgca
     2161 ttcggtaacg caaacacttc cctaccttgt tcaagggcat aacgagcggt aatcagtgaa
     2221 ccactattaa gcgttgcttc aataactaaa gtgccgagcg ataagccact aataattcga
     2281 ttacgacgag gaaaattttc tgccaccggc ggctgattag gcgagaactc cgacaccaat
     2341 gcaccaccta aatcaacaat ttgttcggct aattttttat ggcgagcagg atagacttga
     2401 tttaatccac tccctaacac ggcaatcgtt atgccttgtt ccataacgat tttttgatgg
     2461 gcaaaaccgt caataccaat ggctaaaccg ctggtaatga taatattatg gcgagctaat
     2521 tcggcagcaa attgcccagc ccaatattca ccataatgag aatagtctcg gctgccaaca
     2581 atcgcaattt gtggcagaga aaggctttcc acatttccct ttacataaat taacggtggc
     2641 gcagtcgaaa tttgttttaa gagaaacgga taattttcat caaagagtgt cacaatttgc
     2701 tgatttggca attctgacca agtcatcgcc tgatcaatcc acttttgatc aggattaaac
     2761 caacgttgaa tttgcttttc attccaacct atttgtttga gttgaagttt gtcatagtgg
     2821 caaaattcag caaaattgag ttccgccaat aatcgcccta tacgttgagc ccccatttgc
     2881 ggcacttgta ataatcgtaa taaatcgtag tgatatgcca tattttcatc ctcaaaattt
     2941 ccctaataat aagaaaaggt ttaaaatagc caaacgaatt ttttaaactt ttcgagagag
     3001 atcacaaaaa tggcaatatt agatgttgtg ctttaccccg atgagaaact ggcaaccgtt
     3061 tgtgaaccgg tggaacaggt ggacgaagca ctgaatcgtt ttatcgatga tatgtttgag
     3121 acaatgtacg aacacgaagg tattggctta gctgcaccgc aagtgggcgt acttaagcgt
     3181 gttattacta ttgatattga gggcgacaaa accaatcaag tggtgttaat taaccctgaa
     3241 attttagaaa gcagcggtga aaccggcatt gaagagggct gtctctccat tcccgggcat
     3301 cgtgccttag tgccacgcaa agagaaagtg aaagtcaaag cccttaaccg ccaaggcgaa
     3361 gaaattatca tcgatgccga tgatttattt gcgatttgta ttcaacacga aatcgaccat
     3421 ttaaacggcg tgctttttgt tgaccacata tccaatttaa aacgccaacg catcaaagaa
     3481 aaaatgcaaa aattgaaaaa gcaaattgca cgagcgaaat aaccaggcac aagcggttaa
     3541 aatggcttaa aaatttgcaa attaagtgtg atgacacgat aataaccaca gttcaacttt
     3601 agaaaggata aaaatatgat tatcgtcacc ggcggcgcag gtatgattgg cagtaacatt
     3661 gttaaagcct taaatgaaat cggtcgcaaa gatattttag tagtagataa cctcaaaaac
     3721 ggggaaaaat ttatcaactt agtggactta gatattgcgg attattgcga taaagaggat
     3781 ttcatcgcct ctattatcgc cggcgatgat tttggtgaga ttgatgcggt tttccatcaa
     3841 ggggcttgct cggcaaccac cgaatgggac ggcaaatact taatgcaaaa taactacgaa
     3901 tattcaaaag agttattgca tttttgctta gatcgccaaa ttcctttctt ctatgcctca
     3961 agtgcggcaa cctatggcgg acgttcggat aattttatcg agaaacggga gtttgaaggt
     4021 ccattaaatg cttatggcta ctccaaattc ctgtttgatg aatatgtccg ccgtattttg
     4081 cctgaggcag aatcaccggt ctgtggtttc aaatatttca acgtatacgg gcctcgtgag
     4141 caacacaaag gttcaatggc aagcgtggca ttccacttaa acaaccagat gttaaaaggg
     4201 gaaaatccaa aactatttgc cggctcagag cagttcttgc gtgattttgt ttatgtggaa
     4261 gatgtggcaa aagtgaatct ttgggcgtgg caaaacagca tttctggcat tttcaacctc
     4321 ggcaccggaa aagcggaatc tttccaagaa gttgcgaatg cggttatcaa ataccacggc
     4381 aaaggcgaaa ttgaaaccat cccattcccg gatcatttaa aatcccgcta ccaaacgttc
     4441 actcaagcgg acttaaccaa cctaagagcc gctggctaca caggcacatt taaaaccgtt
     4501 gctgaaggaa cagcggaata tatggcgtgg ttgaatcgct aatcaaacgt tgttaaaaaa
     4561 gcagaaagag ctacgaaatg tagctctttt tgttataagg ttataaggat tagaatgctg
     4621 tcgtatcttg gaataagcct acttttaaat cagtagcagt atagatcact cgcccgtcca
     4681 cttcgacttc accatcagca acccccatca ctaacttacg attgaccaca cgtttcatat
     4741 ggatacggta agtaactttt ttcgctgtcg gtaaaatttg tccggtgaat tttacttcac
     4801 ctacgcccaa tgcacgccct ttgccttcgc caccaatcca gccgagataa aaaccaacca
     4861 gttgccacat cgcatctaag cctaagcaac ccggcattac aggatcgtta ataaaatggc
     4921 agttaaaaaa ccataaatcc ggtttaatat caaactcagc ttcaatatac cctttttcaa
     4981 aattgccttt ttcttggttc atttcaatga tgcgatccat cattaacatc ggtggagccg
     5041 gcaattgagg ccctttttca ccgaataatt ctccttttcc tgatagcaaa agctcttcgt
     5101 aagtatagct tggtttgata attggtgtac aactgttcat tatttttaaa atcctgtaaa
     5161 gtgaaaaaag cctgttatat caataactga taaatcaggc tgatagtaac agacttttaa
     5221 ttcagtgaac agttgtaagc tgacttgtcg gatcagtcta gctttatctt tttgcaaatt
     5281 ttgcttaaaa atgaaccgct tgtttcttca ctttcccgct catctagatt ctggtgaatc
     5341 aaggtaaata atgctgtttg ggctgagtta ggggctttct catcatcata aaaatcccgc
     5401 tcaaacagaa tcgctatggc atcaaacaca ttttccaccg tccaaatttt aaatagacct
     5461 tgctccactg cctcaacaac ttctgaactt aaactcaaat ggctaacaca ggccgccgga
     5521 ataatcacac cttgtttccc cgttaattgg cgagcgtgac aaatattaaa gaagccttca
     5581 attttctgat ttaccccgcc cacgcttagc acattcccaa attgatcgat agcacctgtc
     5641 accgcaatag attgtggcaa gccaacttta gctaaggcac tcactagtac attgaaaatc
     5701 gcaagagaag aactatcccc atcaatttca ccataggatt gttcaaaagc aatcgaagct
     5761 gaaaacggta actgggttgg tagttctaac agattcgcta aacaagattg agcgataata
     5821 atacctttgg agtggatatt tccccctagc tccactttac gctcaatatc tgtaatttcg
     5881 ccatcaccat attgtacatt acaactcatg cgtaagggct cgccaaaact atgcggaatg
     5941 ccttcaaact caatgaccga taagccattg atctgcccaa tttcctctcc ttcggtttca
     6001 atataaagtt gattagtcag aatatcaccc accgtatatt gatttaatat cgatgattgc
     6061 tgttctaaat aatcaaaata accttttacc tcgtcaattt cggtcacatt tgggtaaaaa
     6121 ttttgaattc ctaataaatg ttttctcaat aatgtagggg aaatagacac caactctcgg
     6181 ctttcacttt cacgtatata ggcctgtaaa aattgattaa gcgctgtgga agttaatcgc
     6241 ttattgatga gattctcagc ataattctga acataacctc cccactgctc cacattatcc
     6301 gataatgata agtaggattt tatttcggta tattgcccaa attggtacaa cccatcatca
     6361 taagcagata aagtagaaat atcttctctt tcccctacta aaatcaattt aaatgttgat
     6421 ttctctttag ccgataaata gggtgagtga ttaacagaat ttggctcata ttcaccaaat
     6481 aataatgcct gttttagctt atcccattgg gtaatatcca ataagagcga acggatatta
     6541 acaattaaaa ttcccttatc tgcctcgtga attgcacctt taacatattc tgttttcagc
     6601 tctctttcca aaaacacaga ataaccaaat agactatttt tattgaaatc cattttgcta
     6661 ataatcggca gatctacact atattttttc agatattccg tgatttcatt gataaattcc
     6721 ggaaaaagct cagattttaa gactaataaa gcaccaaact gagattgtaa aaattgattt
     6781 aacgcttgtt ttgcttgagg ttgaaaatct aaaaaattca atttctcatc taaacgagag
     6841 aaatcatttt gcattactaa tttttggcta ctaagtaaag aaagggtcac aaatctgcct
     6901 cattattgaa aatttggttt attatacaaa attccgctat acttgctaaa tatagcttac
     6961 tttttcctat catattcaga ttatgcgata tcagaaactc atcacccaag aaacaacttg
     7021 gaaatggcaa tatctcctaa aaaaacatcg tgaaggagaa aatattacta agtacgaaga
     7081 acaaagcttg atcgatttaa aagttcagtt cctctctact ttgcaaaact ctccggacga
     7141 agtggaaaaa tggattaagt cggaaatgac gcctgagcaa cgtaagaaaa tgcgtcaatc
     7201 agtacgcgcc aaacgcaaac gcttctttaa tgctgaaaag caaacaacca agaaaaaatc
     7261 cattgattta gagtattcga gctggttaag gctctctaaa tatgccaaaa gccaaaaact
     7321 aacgctttct gaagctattg tcaaattaac cgatgaactc gaaaataaac aactttactt
     7381 agagcaagtt gctaaaatga aatcaagttt aaaagattta ctgaaataaa aaaagaaaaa
     7441 agcccactaa caagcgggct ttttttgatt caatttttca actgaataac tatattacat
     7501 agttacttct tttgaacctt gaacttggat ttcaacacga cgatctggtg ctaagcaagc
     7561 gattaatgct ttacgacctt taactgcatc acatgtgtga ccagttactg ggtttgcttc
     7621 accgtaacct acagctgtta cattagctgg gttagtacct ttagaaacga tgtaattagc
     7681 tactgtttca gcacgacgtt gtgaaagttt taagttagat gcttctttac cgatgcggtc
     7741 tgtgtaacca ttaacttgga tagctaggtt tgctaagcct aagttgctga tttcagcgtg
     7801 tgctgcatct aaagaagttg ctgctgctgg ttttaagctt gatttaccga aatcaaataa
     7861 aacatcagag ctgaatgcga agtttttagt tacaacttct ggtgcttcaa ctggtgctgc
     7921 accttgaccg aaacggtatg ataaacctgc agatactgag tggatatctg ggctgtattg
     7981 gaaatttgta cctcttggta ttagataacc aactgttgta cgaactgcct tatctaagtt
     8041 accaacacga tttaagtatt gatattcaac acgagcagct aattcaggag taattgcata
     8101 ctcaagacca gcacctaata atagagatgg ttttaagttg tgaactttaa tgcgtgaatc
     8161 tttatctaca tgttgttgta cgtagtaatc gttgcgaact aatgcaacac ctactttacc
     8221 gtaaacatct aagttaggaa caacttcgta gcttggtttt aagcttaagt gcgcaccgtg
     8281 agctgaatgt ttagccgcag ttttttcttt atcatcacca gaaaatgtag tgttaccacg
     8341 aacacgacca aagtagtcat aacctaattc tgtcgctaaa ccaaagttgt tttggtttaa
     8401 gatttggtaa ccaccgaata caccgtaagt tacagagtta cggttaatac cgaggttaat
     8461 accgaggtta ataccggatc cataatcata tgtgttgtca aattgagtta aaccgtcgtg
     8521 gaatgatgcc caaccagctt tagcacctgc gtagaaagtg ttagcttgtg gagctgcttg
     8581 agctactgca gctgctgata atactgctaa tgcaact
//
LOCUS       DANLXB010000107         8606 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLXB010000107 DANLXB010000000
VERSION     DANLXB010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8606
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            43..795
                     /gene="ftsN"
                     /locus_tag="PXD41_001685"
     CDS             43..795
                     /gene="ftsN"
                     /locus_tag="PXD41_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL6289204.1"
                     /translation="MRIIGVILFFGIGLWFLKSSAPVPTVPSAPQPANSQTKSELPSR
                     PEETWSYIRDLETRTVITDNSQTSQERLAQLTAEQKQQIEERRKQEEARLAAEQAQQK
                     PATDVSATELAPKTEEVKSLTEEELAAKKAQEQALAQKQAEEKRRQAELKKQQEAKKE
                     QPAKIVASAATLADKAANQAGKFGLQCGAFKNKAQAENMQARLAMAGFNARIASSADW
                     NRVFVGPIGDRAATSRAQSNARSVAECVIVAM"
     gene            complement(837..2018)
                     /locus_tag="PXD41_001686"
     CDS             complement(837..2018)
                     /locus_tag="PXD41_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6289205.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            2125..2463
                     /locus_tag="PXD41_001687"
     CDS             2125..2463
                     /locus_tag="PXD41_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289206.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            2595..3464
                     /locus_tag="PXD41_001688"
     CDS             2595..3464
                     /locus_tag="PXD41_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL6289207.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            3556..5367
                     /locus_tag="PXD41_001689"
     CDS             3556..5367
                     /locus_tag="PXD41_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289208.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            5376..8156
                     /locus_tag="PXD41_001690"
     CDS             5376..8156
                     /locus_tag="PXD41_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL6289209.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTNTRKYFM"
     gene            8178..>8606
                     /locus_tag="PXD41_001691"
     CDS             8178..>8606
                     /locus_tag="PXD41_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6289210.1"
                     /translation="MDLFESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFG
                     LLGWDITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVK
                     IKTDPLPAHQVRRYGFTAKLSISVLSNFEYLAIYDCSEIVD"
BASE COUNT         2771 a         1723 c         1786 g         2326 t
ORIGIN      
        1 agtaaaaaaa atcaaaaaga aagtaatgtt aaaaagattt taatgcggat tatcggggta
       61 attttattct tcggtattgg tttatggttt ttgaaatcca gtgcacctgt accaacagtt
      121 ccgtcagcac cgcagcctgc taattcacag actaaaagcg aattaccaag tcgaccggaa
      181 gagacgtgga gctatattcg tgatttagaa acccgtacgg taattaccga taatagccaa
      241 acttcacaag aacgtttggc acaattaacg gcggaacaaa agcagcaaat tgaagaaaga
      301 cgcaaacaag aagaagcacg cttagccgct gagcaagctc aacaaaagcc tgcgaccgat
      361 gtatctgcta cagaattggc tccgaaaaca gaggaagtta agtcgttaac ggaagaagaa
      421 ttagcagcaa aaaaagcaca ggagcaagct ttagcacaaa agcaagcgga agagaaacgc
      481 agacaagcag agcttaaaaa acagcaggaa gcgaaaaaag agcagccggc taaaattgta
      541 gcaagtgctg caacactggc agataaagct gcaaatcagg cgggtaaatt tgggttacag
      601 tgcggtgcat ttaaaaataa agcccaagcc gaaaatatgc aagcaagatt ggcaatggca
      661 ggttttaacg cccgtatcgc aagcagtgcc gattggaacc gtgtttttgt cggcccgata
      721 ggtgacagag cggcaacttc cagagctcaa tccaatgcac gcagtgtagc ggaatgtgtg
      781 attgtggcga tgtaaaattg attgaaatat tgaagagagc tataggctct ctttttttat
      841 atcccaatcg catatttcaa ggcttgcttt ttgatgggtg acactttatc agccaatact
      901 aaaccgacat tgcgggcaat tttgagcggt aataaatcgg tcttaaacgc tttataaaac
      961 acgtccatgc ctgtttgcat cagtaaatta tccggtttac gtttttgctc atagcgttga
     1021 agcacctgct cacttgcaaa atttttgcct tttttgaccg cttgttcgat cacctcaagc
     1081 aaggttttaa catctttaaa gcctaaattt acaccttgtc cggcaagcgg attaatggtg
     1141 tgagccgcat cgccgactaa taccaccccg ttttgcacat agtgctgagc gtgctggcgg
     1201 gttagcggga aagcccctga agcctgcacc tgaatgttgc ctaattctgc gttgagccgg
     1261 cttgggaaat gttgctcaat cgcaactccc agcttttctg ctggaagcat tttcagttcg
     1321 gcaatttttt gtggtgaatc gtaccaaaca acgcagccgt gattgccgga aagcggtaaa
     1381 aaggctcgag ggccggttgg atagaattgt tgccaagtgc cgcttggagc aggtttttcg
     1441 gtggtaacgg tggcgagtaa acagtgttgg cgatattgcc aagcggttaa accaatgccc
     1501 gcccattggc gaacctgtga atttgcaccg tctgcggcaa tcagcagtgg ggcagcaaag
     1561 gtgttgccat caaccgtcac ttcccaatac tcgcccgctt tatttgcaaa aatttgctca
     1621 aatccgaccg cttgtaggca gtttggatat tgctttaatt gctcccataa cgcaatttga
     1681 ataacgttgt tttcgaccat atcgccgagc ttttccaaac ccaaatcagc tgccgaaaaa
     1741 agagtgttga atccatcaat ttcccaggtt tcgagctggg tataaggggt gcttctcatt
     1801 gcaacaattt gctcccacac gcccaatttt tctaacagtt gaatcgagcc catactaatg
     1861 gcggaaattc gcaaatcgta gtctgaatca ggattaaagg tcggcagagg gtttttctcc
     1921 aacaaggcta aacgcagccc ctgttttgct aagcctagag ctgttgctgc cccaatcata
     1981 ccgccaccga ttacaatcat atctaattca gttttcattt tttcttcctt tttagttagg
     2041 caaaatactg ctaaaacgcc ttgaattgta gtgcatttca gattaggatc aaaccgattt
     2101 atctatttat ctaaggagcg ttttatgtct tgcaaaactc atgcaaacca cgagcacgaa
     2161 cacggcgaag gctgtggtca tactgctatt aaacataacg accatatcga ctatttacac
     2221 gatgggcatt tacaccacaa caaacacggc gatcactatg acgaacacgt tttagaagtg
     2281 aatgaaacca acccggcaga ctgtaatgcc gcccattgct gcggcgacca cgttcatggt
     2341 gaggtttgcg gacacgaagc tgtgccgcac ggcgatcata tcgactacat cgtgaatggg
     2401 cgtttgcacc accaacacgg cgaccactgc gatgaccacg ggccggttga aattgtgaaa
     2461 taagattttt gatgggaggt tttagcctcc cattattatt tttgcgatct cgctcgaaaa
     2521 attgaacatt cctgctaccc ctcttccgat tttcctttta tgctctcggt attgatttct
     2581 aataccgaaa tgtgatgacc ttagcgattg tttacagccg agcctccatt ggcgttgaag
     2641 ccccgttggt gacgattgaa gtgcatatta gcaacggaca accaaaatta accattgtcg
     2701 gcttgcccga agccacagtg aaagaggctg gtgatcgtgt gcggagtgcg ttgctgaacg
     2761 ctaattttat ctatccgcca caacggatca cgattaatct tgctccggca gatttaccca
     2821 aagaaggcgg acgttttgac ttgccgattg cgattggcat tctggcagcc tcagggcaaa
     2881 ttgattctga tttattaacg cagttcgagt ttttgggcga gttggcactg acagggcatt
     2941 tgcgaggagt gcacggcacg attccggcag tgatttctgc cgataaagcc aaacggcaga
     3001 tgatcttagc caagcaaaat gcgaatgagg catcgcttgt ttccaatgcc accacctact
     3061 ttgccggctc gttgttggag gtggtaaata tgctcaacaa acgggataaa ctgccgattt
     3121 gtcagcacat ttcgcaacat tctgccgaaa ttcgaccgct tgtcagccga gatcttactg
     3181 atattatcgg gcaacaacac gccaagcgag ccttaatgat tgccgctgcc gggcaacata
     3241 atttgctgtt tctcggacca ccgggaacgg gtaaaacaat gttggcaagc cggctggcgg
     3301 atttactgcc ggaaatgacc gatgaggagg cgattgaaac cgcctcggtg accagccttg
     3361 tgcaaaatga gctgaatttt cagaactgga aacaacgccc gtttcgttcg ccccatcaca
     3421 gtgcatcaat ggtggcatta gtgggaggtg gctgtgaaaa ctagaaataa atgtcaaaaa
     3481 caagaaataa atgtcacaaa tctttctcta atttcgctat aattcgatca tcaaaacttt
     3541 aaggggaaat ccgttatgtt ctacctcaat aacgacaatt tcaaacgaga accttatcgt
     3601 ggatattgtc cgagtcacct tgaaaagctt tttactaaac cacaccttga tattagaggt
     3661 aacggttatt attaccctga caatgaatat gttgtagctt ggtatgaatc ggacttcatt
     3721 ttcaaatcaa gaaaagctca agcacatgca aaagtaaagc ttgttaattt aacttgcccc
     3781 aaatacactg gcaaaaacag tgctgaatat ttaagcgttt tgtatatctc cgttcccctt
     3841 aattatctac attatttcac tatcggcagt atctggaaag gcggtgtcgc caaagagcag
     3901 tttgctctcg aagaatttta cattacggtt gaagctgaaa atcaagatgg taaacgagaa
     3961 aacctctcaa tcgtttcatt cggtgagagt gaggaaaacg gtttagagaa accatttgat
     4021 tacacaatct acactatccc cacagaatat cacaactacg gtgatgacct aaaccgacta
     4081 ctttccatct cttaccaaaa tcaaaaattc attatccatc cgctacatat ttttatgatg
     4141 cactacgggt actctacgga catcaagcgt atcttggcaa catacccact tgacgaggta
     4201 agagaacgcc tatttataga taaggtcgtt gagaattttg atgtagagcg ttatgtcgtt
     4261 ttaccgaaat actttgtaaa aaaagatgcg attttcctct atcacttcaa atatgacgaa
     4321 gagactacgg gaacaagggt aaaaaagctt gtaagccagt ttaggttaaa tattcacaat
     4381 caaacacatc caatagaaat agatttttgg cacacgcaaa aggttgaatt gaaaatccgt
     4441 ggtgttcgac ttggaaatgc tgtgttatgc gcagaaatta tcggtcttaa tcagcccgaa
     4501 ggcgaagata ttacgctagt gctatctcaa tcgaaaagag aaaaatcggg taataaaacc
     4561 gaggaacaaa ataacgaggt aaataacgtt cctattacca gagtttatac acgagaacct
     4621 gaattggatg agttaccact caccgataac tccccagata atcgaacagt cgaatacaac
     4681 aagcgacaat ttgaactctt gggccgtcaa cgccaaatca gagcgctcaa gaaagcacgc
     4741 gaagagagta atcagaaaat gaaagccttg actccagatg agatagactc actgggtgta
     4801 ggtgaatcag atggccgaaa cggtaaggtt ggactcgctt tctgtttcct tgatgataca
     4861 cctgttggca aaagctccaa actatacaaa ttatggcagc acgcgaaggc tgttgcggaa
     4921 tggaatcacg gtgaggcgca ctggtacacg cctaatctcg gttttagaaa tgacgatgaa
     4981 ctccttcccg tttccttaga aaccaacaaa tgtttcgact accctgaaat cgcgataatt
     5041 atccgcctcc aaatatacgg agaaacattt ttcctgattg atttctcaat gaagcaaaga
     5101 gatataagca ttcgtggctt agggtataaa cccgatccaa acgaagattt tctctatgaa
     5161 agtgatatga gcaaaagcga attatccgaa ttattgtccg cagttcatca tcatgaacat
     5221 ctgccaaaag agtacataga gaaaaagaac aaagaaaaaa ccaaactcac tacatttaac
     5281 catagcgaag ccgaaagtag taactgggct tataacgcgg tgcaaaaatt aacttcaagg
     5341 gcaattacta agccgacata tttttaatta tttttatgaa tgcagaacaa cgtgtaattg
     5401 ttactccgac attttggggt aaattttttg gaaaaattaa aagtgttgaa cttcaacaaa
     5461 acaaagttat cgtaactgac aaaaagaata atataactga acatgattta ggaaaaactt
     5521 ttgactttcc agctatccag aagtctttct ttggtactaa attatttttt aaagacgata
     5581 gcacagaagt tgttttatca aaacttgcga aaaaacaaac tgatagtcta ttacttgaaa
     5641 tcgaaaaagt agttgcatct aatattaaag tgaaagtaaa agagggtttt caacactttg
     5701 caaatttagc cgaaaatcaa tatctcagag attccgacat tcctacatta aatgatcgtg
     5761 taagattgtc agtgctttcc tatggggata acaaagaaca ttttcaaaaa tactttgatg
     5821 aaagtttggt taagaaaatt caatatatct cttcactttt tcctgtaaat gccataaatg
     5881 ctcaaacaat tcgaagagaa tacgagcaac atgttttaaa tcatcgcaag catttctttg
     5941 atgtcattga atctaatccg cttactgagc aacaaagatt gtcagtcatt cggaacaacg
     6001 acatcaatat ggttcttgct gccgcgggga caggaaaaac gtctgtaatg gtcgcaaaag
     6061 cattggactt aattgattct ggtgcttgta aaagcgaaga tattttgatt cttgcataca
     6121 accgcgatgc agcaaccgaa ctatccgaac gcttacaaga acgtgcacga gaagccaatt
     6181 tagatctgga aaatagccct agcatctcga ctttccatgc gcttggccga agaattatta
     6241 aagaatgtgg aaaatcagtc cacttgtcaa aatttgccga agatccgatg aaattagata
     6301 gatggttcaa caaatggcta gaggactaca tcaaagaaga tcctgataat cttgcaaaat
     6361 tcattcaact tgcataccaa cctatcgatc cattccaatt caaaacgaaa gacgaatacg
     6421 atagatatgt aaatgacaat gactatcgaa ccttacaagg cgaacgcgtt cgtggttatc
     6481 aagagttatt gatcgcgaac tggcttttta gccacagcgt agaatatgag tatgaaccaa
     6541 ggtatgtatc aaaacgccgt atcgagattg gttttgacta caaacccgat ttctctttgg
     6601 gtgatggtgt ttaccttgaa catttcggca ttgaccgaca aggtagaact cgcgcagata
     6661 ttaacgcgca ggaatataat gccaatatcc aaagaaaacg tgagttacac gccgaacata
     6721 atacaacatt actggagaca taccactaca actgggtgga aaatacgtta tataaacgac
     6781 tagagcaatt gatgaatgaa cagttcattc ctctgaagcc aaaatcacaa caagagattt
     6841 tagatgcact caatgaatca ggaatcttca aagaaaacaa aaatcgctat ttgaagtgcc
     6901 ttcaagctat tcgtacagag cgattagact atcaacaaat cttaaaacgt ctaaccgatg
     6961 cgaaaattgt ctatgctaaa gaatatgcga cattgctcat gcgtattcat gatgcctacg
     7021 ttaaagaact acgtagcgca aatgaaatcg actttgacga tatgattttg ttggctactc
     7081 aactggtgaa aacaggtgag tttaaaccta aatggaaaca tattttagtc gatgaatttc
     7141 aagatatttc tatggctcga ttggagttat tgaaagaaat ttatactaaa gggcctcgac
     7201 cgatttggac tgttgttgga gatgactggc aatcaatcta tcgtttctct ggcggtaaac
     7261 tagaagttac tacgcgattt aatgatatgg tcggctcaca cacgctaagt aaactagaaa
     7321 aaacctaccg ctataacaat agtattgctg acacagcagg tcaattcatt atgcaaaatc
     7381 ctgagcagta tcagaaaaat gttgtaacgc atacaaaggt cgctgattct tgtgttcatt
     7441 tgtatgactc tcatgtcgta aaggatgaaa aatcagaagc caatatcagt ttaaaagcct
     7501 cagcaatatt aaaactgata cgtcaaaaag cacctgaagc cactgtcgca attttggcta
     7561 gataccgtta ccttttagaa gatgcaaaaa gtgtaatcaa agataagaat gttaaatttt
     7621 ggacgttcca cggctcaaaa gggttggaag cagattactg cattttactt ggtttcttcc
     7681 aaggaaaagt cggatttccc aaccaaaata aagaagaagc cgttgtagaa gcattgcttc
     7741 ctatgctaga cagttttcca cactcagaag aacgtaggtt attttatgtg gcattaacgc
     7801 gtgcgaaaaa agaaagttat ttgatcgcag atgcgaacgc gccatcagaa tttatcaatg
     7861 aattattatc accgaaatac aagatagata ttgtgtcaaa acgattccaa gaacgttatc
     7921 ggacaatctt taaatgtaat gaatgtagca ctggctattt cgtgatgaaa caaggtaaat
     7981 ttggtcagtt ctattcttgt acatcagggg aagtatgccg ctcttcgcca cggatttgtg
     8041 aaaaatgtgg ccgtcctatg aagctgcgag aaggtaaatt tggtcagttt tggggatgct
     8101 caggatatgg aatcaaaggc gatcaatgta cgaatactcg taagtatttt atgtaatata
     8161 ttattttgga ggattttgtg gatttatttg aatcaaaaaa acaattaata gagttaatta
     8221 aaaagtacga tagtgataaa gaaatttatt cttcatcctc atacaatgag tctcagttaa
     8281 gaactgactt tttagaccct ttctttggtt tacttggatg ggatataact aactcaaaga
     8341 ataaactcac atctgaaaga gaagtgattg ttgaagaacc actaaaagaa aaagtttcag
     8401 aaaatgtaaa aaaaccagat tatacattta gattcaattc tcaaagaaag ttttttgttg
     8461 aagctaaaaa gccaagtgtc aaaatcaaga ctgacccttt acctgctcat caggtaagac
     8521 gatatggctt cacagcaaaa ttaagtattt ctgttttatc taattttgaa tatcttgcta
     8581 tatatgattg ttcagaaata gttgat
//
LOCUS       DANLXB010000108         8563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLXB010000108 DANLXB010000000
VERSION     DANLXB010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..247)
                     /locus_tag="PXD41_001692"
     CDS             complement(<1..247)
                     /locus_tag="PXD41_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289211.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLL"
     gene            complement(274..948)
                     /gene="cas4"
                     /locus_tag="PXD41_001693"
     CDS             complement(274..948)
                     /gene="cas4"
                     /locus_tag="PXD41_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL6289212.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(948..1811)
                     /gene="cas7c"
                     /locus_tag="PXD41_001694"
     CDS             complement(948..1811)
                     /gene="cas7c"
                     /locus_tag="PXD41_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL6289213.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(1821..3602)
                     /gene="cas8c"
                     /locus_tag="PXD41_001695"
     CDS             complement(1821..3602)
                     /gene="cas8c"
                     /locus_tag="PXD41_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL6289214.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3624..4301)
                     /gene="cas5c"
                     /locus_tag="PXD41_001696"
     CDS             complement(3624..4301)
                     /gene="cas5c"
                     /locus_tag="PXD41_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL6289215.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4543..6294)
                     /locus_tag="PXD41_001697"
                     /pseudo
     CDS             complement(4543..6294)
                     /locus_tag="PXD41_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6284..6745)
                     /locus_tag="PXD41_001698"
     CDS             complement(6284..6745)
                     /locus_tag="PXD41_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289216.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
     gene            complement(6904..8040)
                     /locus_tag="PXD41_001699"
     CDS             complement(6904..8040)
                     /locus_tag="PXD41_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6289217.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
     gene            8087..8503
                     /gene="tnpA"
                     /locus_tag="PXD41_001700"
     CDS             8087..8503
                     /gene="tnpA"
                     /locus_tag="PXD41_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL6289218.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
BASE COUNT         2339 a         1929 c         1630 g         2665 t
ORIGIN      
        1 gaaggagttt tctccaatca ggagcaatta aattagcatt actaatttga gcaatccctc
       61 ctaatacaaa tacaggagga accccaatgt gggaagaaat ggttctatta aaattactac
      121 cttttttatc attaggcgta tgttttaact tcccaatatt tccaccactc tcatcaagaa
      181 atattttgta gttatgctgt gctatattta atccgtgaaa tgatctttct aagtttgaag
      241 ttatcacaac aagtccctcc ccaaagtagg taattataat aaagatccaa acactcccac
      301 cacatacccc ttcgatctat ccctttccaa caactttggt tggcagaggt cgataagcga
      361 gcaggctttg cagcgtttgc tgtattctgg aggaggtgtg gttccgctat ctaagagcga
      421 ccgcacttcg gcaatggtgg cgagggtttt ggtgcgtagt tcggtggaaa aaatgatcgg
      481 caaacggtgg cgagtttgca tataccacaa cgccccttcg ttaatcgtct gctctgtcat
      541 ttcttccaaa cataaggctt gggcacagag ttggatttca tcaatcggat caagtttggg
      601 cttgccacgt ttgtattcca ctggttttag ctcgcctgtt tttaggtctc gctcaaccaa
      661 atccaaaatg ccgcttatgc ctaatttttc ggctgcaacg tgaaccgttc gctcaaagcg
      721 aatccctttg cgaacttctg gctcaccact atctacccgc tcgtgcaacg cttgaccttg
      781 tgcggtgaga tagttttctg cccacacctg ttcgttgtgg atcagcgcac attgacgtgg
      841 gcagaaggca tagtgttgca aagcggaaag cgaaattgac cgcttgtcat cgccaaattt
      901 tggctgaaca agcggtaaaa tttccgcaga attttgcaaa tcgcccatta cagtaattct
      961 tcaacggtta cacccgttaa gccttcggtt tgtacgctga tacagtaatc gtcatagtct
     1021 ttcgctggcg tgtctttttc accgttgatt cgctcaactt ttaccgagtc aaacagtttg
     1081 tgtgcaggtt ggttgcctaa ttcgctgtcg tgtttaaata cgatcagttt acgagctgcc
     1141 atttcgcctc gtgcggcaga acggtcgtgt tcaaacataa gttgcaaggc ttgccaaagt
     1201 ttttgtacat cttcatcaga aaagcccgtt ttttcagcga gtttagctga aataaagccg
     1261 tgaacacgat aaagtgcgta aggcacgata tatttacgcc ccatagtccg ttctttttca
     1321 agatcttttt cgttggtcac tgccattcgt gtgatcgata cttctagcgg aataatcgga
     1381 tcgatagatt gagcgaacgc caattgcact gggcctcgca cctgtccgct gtttacttcg
     1441 gtagtcatta ccgccccaaa ggtgcgaata tcgaaaaagt ttttgcacat ccaagcggta
     1501 atttctcggg ctttagcttc ctcttttggt agttttttcg cttccgattc aatccctaat
     1561 gcttcataag cacgtttgtt ttgtaaattc agaacacttt tttctttaac ataaatttcg
     1621 taacccgcct cgttttcata gctcatttca ataaaattgc ggattttgcg ttttaggcaa
     1681 acatcggtga ctaaaccttt actggtttca ggatcaaggc gtggcatatt tcctgcatct
     1741 ggatcaccat ttgggttacc gttggttaca tcaaagaaaa aaacaaattc atagcggttt
     1801 tgaatagaca tagtgtttcc ttagttttca atagactcag tggtttcttt tttagcgaaa
     1861 tagctttgtt tttggtggta ataaccaatc gcaaaacgcc cttgttcatc gatacttaaa
     1921 tggcgaggga aattttccgg caagctggca ataatctcac ctaaatcctt atccagatta
     1981 accgccattc cgcccttatc ttttctcaag cgagataaat ggtgttttgc accgcttaat
     2041 aagcgaggga ataccgaaaa cggcacggca gaagccgaac cataatagcg gtcggcaatg
     2101 ccggcattta attcgcctaa tgcttggctt tggattcttt ctaatactgc aaataacctg
     2161 ccgagcaagt aagcttggtt atcgctttct ttatttaagc tcataggaac tccttcttta
     2221 ataaaacctt ttctaaattt tcgttgtaag actgctttca tcaacgctac tcgcaaaccg
     2281 ttaatatcgc cgtctgctcg gattcgagtc actaactgtg aaagtaaact catcggatat
     2341 aaatgaccgc taataactgc gcgagccatt tcacccgcca agactggaga aatattctca
     2401 cttttaccta atgaagcggt ttgtaataat agtcgccaaa tggaaggtgg tgttttccat
     2461 gggcaaggct caagagcgag atcttgccaa tgctcgctga ggttttttgc cagttgccca
     2521 aaggtggtat ccagccaaaa acgtaccgaa atgcgagctg catttggagc aagccccaac
     2581 acataaaaac gggtgttttc agataattct ggggaaattt ctgcaagcgg tcgtcctttg
     2641 ctgatttttt gcaattcttc aaagattttt tggttttctt gctcatcatc tggaggcgtc
     2701 attaaagcag caaaaaagcc ttcagcagct tcagcttggg tggtattgtc tgcttctgcc
     2761 caaaagacag tgctggcatc accaatagtt aaacgatgtt tctcggtgcg taacaaataa
     2821 tttaaagcag tagtgtaggc aaaggcggct tgttcagaaa caggggcatt actaccttgt
     2881 tccttgccaa atgaagtgaa ggattcttta ttgaaagaga tgattgaacc accggaactt
     2941 tgcccaccaa ataccccttt aataggagga tgagttcgtt gaattggcga taatttgcct
     3001 gaaattaagc ataaaccttt ttcagcatta tcactttgat ttatcaacaa acttgtccaa
     3061 agggtttgtg cagcttctcg ctgatgaata taaccgcttg tgccgactaa tttaaacacg
     3121 acattcgcat caagaatttc tcttgggcag attgattcgg caaaatgtgt gggttgccat
     3181 tgttgcagga aatttcttat cgccattaaa ccttcatcat tggaatctgc aagcaaatcc
     3241 aaatggtact gtttaaatgc ctcaaaggtt ttctcggcga aattgatggg ttgatctttg
     3301 gcggtggctt tatcaggatt actttcaatg cctagcacat aagcggtttt atcccacaga
     3361 aaattgggct taatgccaga cgtgcgtttt tcagggcgag gtacgctcat caatttcggt
     3421 tttggtttct tatcttctgt taaatttgag atcacattga ccaaatttcc ctttgaatct
     3481 aattctagta cccaaccgat tttttcttca ctgaaaccat aagaaggcac tttagcttcg
     3541 cctgttaagc gatcttcttg tgctgcaagg cggtaataat agcgagttaa ggcggtaata
     3601 atagcgagtt aaggcggaga gaatcatgat ttgacctcct ctgcataaaa tggtggcaca
     3661 tcaatcacgc catttttcat ttccgcacgg aagaaacgag gttgattacc gtgctcaaaa
     3721 tcaatgtcgt gcaacatcca gcctaaatcc cgatctcgct cattttctgc caaaaaacac
     3781 tcaggtaacg gttcatcgtc atcaatcaag gcaaaatttg cggcaaattc acgcacgccc
     3841 atacaaggct gctggaaaca ttgccccttt ttcgcacggc gtttaaacat ttcaatatgc
     3901 ttggtgacgg tttccgcctc gcctgccatt ttggtcagca ctgcgtgagc ttcgatcaca
     3961 taaccgacat ttttcagcac agtagcagca cgttgttggc ggtcgtcttc aatcacagta
     4021 tataaatccg ccactgtttt acgcttcatt gcaccactga ttttactggc agaaatttta
     4081 ctgcctaact cattacggcg aacagactca aattgaatcg gttgtaatac ataaatttta
     4141 tcaatcaccc agcgaattgc cggcttccaa tgcaccgcag ccaaaatccc ccgtgccgca
     4201 gacggcgtaa tcacatcata agacacccgt tctaccttca tttcaggacg ggtaaaacaa
     4261 gcataatcac cccaaatatg gagcctgatt ttgtttggca taatagaatg ctccttttaa
     4321 ttatgtaaca cacacctccc cgaagggagg tgaaatttct ttagcttata ttataactgc
     4381 tttggtttca acccacgcac tcagtaaaat gcgaaaaatt ttatggctta ttatattaag
     4441 cggtcggatt tacttagaaa gttgcaaagt tatttgagta tttaaccgct tgtatttcaa
     4501 aaatagtcag aaaaataaca gcattctagg tacaatattt ttctaagaac gaacttgtct
     4561 ccgcaatgcc tctactgcgt ttgacacagc atttggtttg ggctcctggt ttgcccaatc
     4621 agaccagaat tggcgtgtag cactttctgg ggctatatgc ggtttagcaa gtttgattcg
     4681 tgtaggtaat agaatcgaat cgcctagcaa taacgcttcg cctaaatcaa gtaacggcaa
     4741 tatatcagta attccaacca tagattccgg caataaacgc tttacaacac tttgatcttg
     4801 accatttgtt aatcgtaaaa ccaagaaatt attacattga ctcaaaattg ttcggcttac
     4861 atctgaagga cgttggctaa cgaccaacaa agacacgcca tattttctac cttctttcgc
     4921 aatccgctca aaggcttcca atgcgcgttt ttccgctgct tccgctgaat ctcgaacagg
     4981 gagatataaa tgtgcttcat cgcaaataat cgttagtgga tggcgggaat ctttatccat
     5041 ccaaaattga atgttgtata aaaggcgggc aagaactccc gtaacaatcg gtaaaacatc
     5101 cgacgggact tccgaaaaat caataatttt tatccctttt tcgctctcag aagcagaaaa
     5161 cagttttgac aacatatttt ccagccaccc atagctgttg cactctactg gcggttggaa
     5221 cataaaaccg caacgtctgt catctatttt ggctttcatc cttcccataa acctagacaa
     5281 cttactatac caaggacctt gctttgttcc tgaacctccc tctttaggta ccatctcaga
     5341 attatcttta tctaaacgag ctaacaataa ttcaatagaa tacggaattg gcgaatcaac
     5401 agtaaacgtt tccaaaacat catttctttc ttccttattc aatgtttgct cttttaatgc
     5461 gcgaacatgc tcagtaaaac gcgccgcctg attcggagca ttatcatcac tgcgatctaa
     5521 aattaaagcc agcatttatt cccgattgag cagccaatag ggaataaata aactgcgttc
     5581 atctgaacca tccaaatctc ccggtccagc aatacggtat tgctgagcga tagcgttttt
     5641 accttcgcat agagtgctat attcaccgtg catatcgaat acaataagat tagcagcttt
     5701 taaagctgct gcacgttcca atattaatgc aactgaccag cttttaccgg aaccagtact
     5761 acccaaaata gcagcgtgcc gttgaaagaa tttatctccg tttgctatag ctacagccgt
     5821 ttcatcagcc ataaaatgac ctaaagtcag ccgttcattt tcttttacgt tagcggacaa
     5881 aagattcata aataattgca gattgctgcc actaatatga aagcaatctc tatcaatttg
     5941 cggaaaacaa tccgctcccc gcttaaaagt gttgctcaaa ctaccatcaa cagctttata
     6001 agtaccgatt aatactgcct tgataaagtc atcctgactt tcacccagag gaatttcacc
     6061 ctcattagat atttcttcta gcagcaattt ttcactgata gaacgcgtta cccgttcgat
     6121 aatgccgata aggtactcac tagccgttct gccttgaatc gcaatcagat tacccacagc
     6181 aatactagtc atttgttgat gctcttcaac agaaatcaat acacggctgg tatctactgt
     6241 tacaaccctg cccaaacggg cattgtcttt aaaattcaat gtttcatttg ccattctcta
     6301 aaatctcttt tacaaaaaac tcaacgtccc accaatgaac attaggaata aaagtttctt
     6361 cttgcttgct aaccaccctt gttccagcct tatctccatc aaaaatcaga gccttacaat
     6421 tcggagcttc cttcaccacg tttctggcat tttctgaaag tcctcttgtc agaagtagtg
     6481 ttttcacacc acttttaatt ttgcctgtca aatgtgtttg aaggtggtca tcattaaaac
     6541 catagccgat acataaaatt gaagaagcag aatcaatagc ttcatttgct ttttctcgat
     6601 gagcatcaaa tggttgtcca tagccttttt tatacttccc aacaccaggc gtaataatta
     6661 aaggctcttc cactttacct atacaacttg tcattggaac gtctccagcc ataaaccaat
     6721 ctaaactacc atgcggttta aagattttga tatgatctcg ttgacatcct cccctgccta
     6781 aaggcagggg attcctacta gctcccacag caagctgtgg gctactctcg gtgggtttct
     6841 actgctgatc tctattgaga ttcacttcat agacgcttcg ggtatgtcct accctgatat
     6901 ttattatgct tggactattg cttgcccacg tgtaagaaca ttcattgctc ccactacatc
     6961 ggcattttcc gtatagccac attctacgca ttcaaaattt tcctgtgttt ggcgattttc
     7021 ttttgctgta tagttgcaac aagggcaagt acgactggta ttttgtggag gaactgctag
     7081 caaaaatccg cctaaccatt gcgttttgta gtccagttgt cgtctaaatt caaaccaaga
     7141 ctggtctaat atcactcggt ttaagcctga tttctgtttc acatttttgc cgtgtacttc
     7201 cgctgtgcct ttggctgatt tggacatatt cgccacttgc aaatcttcaa catagatcat
     7261 cgcgtggttt ttgctgattt gcgttgagat tttatgcagg aaatcttttc ggcagttggc
     7321 gattttgtga tgtaacttgc cgattttatc tttcagtttt tgccagtttt tactgaactt
     7381 cactttattt tttagctgtt tttgcagttt tgccaatttt cctttgtggg ttttaaacgc
     7441 atttaacggc tcaaaaaatt ctccattgga aagggttgca aaacgagcaa tgcccatatc
     7501 aatgccgatt tctccgcctt tatgcgtggg aatttcctgt ttaaattccg tttgaatgct
     7561 cacaaaaaag cgtccgcatt tcattgaaac ggtgacattt tttacttccc caacaatttc
     7621 acgactgttg cgataacgca cccaaccgat tttcggcaga tacaagcggt cgtttttctg
     7681 ctcgattttg caaccttgcg gaaaacggaa actctctttt acgccttttt tcttgaattt
     7741 gggcaaatcc gcacgctttt gaaagaagtt tttaaacgca ctttcaaggt cttttaacga
     7801 ctgttgaagc acttgtgaat ggcaatcttt aagccatacc aattcttttt tccattgcgg
     7861 aagcaagttg gcgagcttgg tataactgaa tttgtgatgg ttatcttgtt cgtactgctc
     7921 attttgccac gccaatgcct tgttaaacac aaagcgagaa cagccgcaaa actgcttcat
     7981 tttgcgaact tgttccccat ttggtctgat ttcaaattta aaggctttac gtagtaacat
     8041 tgcacgaatt agaatacaaa aattgtgctt attctacact tggcctatga aaaaagaaac
     8101 agagattaga cgtggtcgcc acgttgtttt taacttacac gttcatttag ttttcgtgac
     8161 taaatatcgc agggaagttt ttactcaagc aattttgaac gacttacact caatttttgc
     8221 aacgatttgt gctgattttg aagccacatt agtggaattt gatggtgaag atgatcacgt
     8281 tcatctactt gtggaatatc cgcctaaagt cgctatttct catcttgtaa acagtttaaa
     8341 aggcgtttcg agccgaatga ttagaaagaa aaactatccg agcattcgca aaaaattatg
     8401 gggaaatcaa ctttggtcac cgtcttactt tgctggtagt tgtggtggtg caccaatatc
     8461 gattattcgc caatatatcg agcaacaaca aacacctgat tagttagaaa tttgaaacgg
     8521 ctttgccgtt tataccttat atccacgccc taaaggacgt ggt
//
LOCUS       DANLXB010000109         8367 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLXB010000109 DANLXB010000000
VERSION     DANLXB010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8367
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            9..3167
                     /locus_tag="PXD41_001701"
     CDS             9..3167
                     /locus_tag="PXD41_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL6289219.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3201..6092)
                     /gene="glnE"
                     /locus_tag="PXD41_001702"
     CDS             complement(3201..6092)
                     /gene="glnE"
                     /locus_tag="PXD41_001702"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL6289220.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6264..6545)
                     /locus_tag="PXD41_001703"
     CDS             complement(6264..6545)
                     /locus_tag="PXD41_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL6289221.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6547..7011)
                     /gene="yciA"
                     /locus_tag="PXD41_001704"
     CDS             complement(6547..7011)
                     /gene="yciA"
                     /locus_tag="PXD41_001704"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL6289222.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7001..7558)
                     /locus_tag="PXD41_001705"
     CDS             complement(7001..7558)
                     /locus_tag="PXD41_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL6289223.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7567..8316)
                     /locus_tag="PXD41_001706"
     CDS             complement(7567..8316)
                     /locus_tag="PXD41_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289224.1"
                     /translation="MSIKFVDLLQQSWNFMRNQQAFSLFAIVTIVVVQLVFILVSPNS
                     PELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINVLMIFNIQSINDGNYRQFFQN
                     AGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVIIALPVLVVGFYFFIKLSLVIY
                     AYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYLLPGMLSRLFTVFGNDFIGIF
                     ITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
BASE COUNT         2461 a         1825 c         1794 g         2287 t
ORIGIN      
        1 gagttgtgat gattaccatc aacgaaaaca ccattgaaca atccgccatt gcaactttgc
       61 aaagcttggg ctgggactac acctacggca aaaaaatttt ggcaggttta gaacacgaat
      121 ggcgggagcg aaccgctgag gtgattttaa agccgctttt ggcgcaagcg attgcaaaat
      181 tcaacccgaa tttgcccgct tgtgaggtgg aaaatgtggt ggcacaggtg tgccgtgccg
      241 acagtggcga tttggcggag cgtaatcgtc aggcttatga ttggctaaga aatggggtca
      301 aaatcactta tcagttgtac ggtgagcagg tgtctgatgt ggtgcagctg attgattttc
      361 agcgtccaga aaataacgat tttcgcattg tcaatcagct ggatattagc ggcaaaaaag
      421 gcaaacgcat tccggatttg attggctttg ttaatggctt gccgctggtg gtgtttgagc
      481 tgaaaaatcc gctcaaagaa aatgccgaca ttggcaaggc gtttgcccaa ctgcaaacct
      541 ataaagatga aatttctgat ttgtttgtgt ttaatcaggc actcgtgatt tcagacggca
      601 ttgtcgcccg catcggttcg ctgaccgctg atttcgaccg ttttacccct tggcgtgtgg
      661 ttgatgaaaa aaatcagagc aaacgcattg tgtttgaaga tgaactcacc gccctgctgc
      721 aaggcgtgat gacacccaaa aatctcttgg attatgtgca gaattttgtg gtgtttgaac
      781 gggacggcaa aaaccgctta attaagaaaa tcggagcata tcatcagttt tatggcgtga
      841 atgaagcggt ggattgcacc ttgcttgccg ccacaggcaa ccgcaaaatc ggcgtgtttt
      901 ggcatacgca aggttcgggc aaatcgcttt cgatgctgtt ttatgcaggt aaagtattaa
      961 gccaaagcag cctgaaaaat ccaactttgg tgttggtaac cgaccgcaac gatttggacg
     1021 gtcagcttta cgccactttt tgcggtggcg aggcactgct caaacaaacg ccaatccaag
     1081 ccgatgggcg agacgaactc cgctctgccc ttgccagtcg ttcggcaggc ggtgtgattt
     1141 ttaccaccat tcaaaaattc ggcttaatgg agggtgagct tgcccaccct gtattaaacg
     1201 agcgggaaaa catcattgtg attaccgatg aagcacaccg ctcacaatat ggttttagcc
     1261 aaaaaatcaa ccacaaaggc gagtatcgtg agggttatgc caagcattta cgcagtgcat
     1321 tgccgaatgc ctcttttatt ggctttactg gcacaccgat tgaacttgat gacaaagaca
     1381 cccaagaagt cttcggtaaa tatgtctcga tttatgattt tgaagatgcg gtggaagatg
     1441 gggcaaccgt gccgattatt tatgagccac gccaaatcag cttaggcgaa agtggcgagt
     1501 tttccaaagt gatggaagag gcacaacaac tgattgatga cgatgaaaac agctataact
     1561 tccgcctgcg tgaaaaactg cacagcgtgg atagccgttt gcaaaaaatg gcggaagata
     1621 ttattgccca ttacgatgag cgtaccaaac agcaagacgg caaggcgatg gttgtggtga
     1681 tgagccgtgc catttgcgtg aaattgtacg aaaaaatcac cgcacttcgt ccagaatggc
     1741 actcaaacga tgtgcttcaa ggcagcatta aaattgtgat gacaagtaat gccagcgacc
     1801 ctgccgagtg gcaaaaacac aatcaggata agaaaacctt agaaaaacgc tttaaagacc
     1861 cagacgatcc gctcaacatc gtgattgtgc gggatatgtg gctgacaggc tttgatgcgc
     1921 cctgctgtaa cacaatgtac attgataaac caatgagcgg acacaacctg atgcaggcaa
     1981 tcgctcgggt aaatcgggta tttcgcaaca aaagccgtga aaatggcggc ttgattgtgg
     2041 attatgtggg cttgaccgat gagctggaaa aagcgatgaa gcagtacacc aacgcaggcg
     2101 gtaaagaaaa gccggtgcgg gacatttcag cggtgctgga aaaaatggtg gaacatatca
     2161 cggtcattca tgggcaattt gccacaccga ttgacggaca agcggttgat attgccaaaa
     2221 tgttgcaaat cagcgaaccg cctaaactgc tcaatgcgat tttgacatca gccaaccata
     2281 ttcttgccct agaccgcatt cagccacctg ataacactgc caaagacaaa accccacgca
     2341 aaaacgcctt tttgcaatcg gtacgcttgg cgaaaaaagg ttatgctttg tgtggggcat
     2401 taaaagcagt tgaaccctat aaacaggaac tggcgtttta tgatgcagtg cgtgccacca
     2461 ttatcaaaaa cagcaccgct cctcgcaatt cttcgagcga aaatgaccgc ttgttgcagc
     2521 ttaccgcctt gatgaatcgt gcggtacagt cggatggtgt ggtggattta tttgatttgc
     2581 tgaaaaaaga ccgcccaaac atcaacctgc tttctgatga gtttttggaa acagtaaaaa
     2641 acagcccaac caaagatttg tggctatcag caatggagcg ttatcttgcc tcacaactgc
     2701 gagagcaaag cggtgccaat cttgccacaa aaaaagcatt tgaacagaaa ctcaaagagg
     2761 cgatgaacca ataccacaac cacaatttaa gcgtattgga aattttagaa gagctgatcg
     2821 ccctcgccaa agagtttgaa gcccgccaaa aacgagggga agcgttggga ctaagccctg
     2881 cggaaatggc gttttatgat gctttggcac gtaatgaaag tgcggtgcgg gaaatgggcg
     2941 atgaggtatt gatgaaactt gccaaagaca ttaccgataa attacgcaaa tcggtcaccg
     3001 tagattggca atataaagac tcggttcgtg ccaaaatgcg aaccttaatc cgcattgctc
     3061 tgcgtaccta taaatacccg cccgatttac aggcggaagc gattgagttt gtgttgcaac
     3121 aagcggaaga gatcgccgga gagttcgcta tcaccgaaac ggcgtaatct atattagggc
     3181 gtgcaatgta cgccctaaat ttatgctaat aacctctgcc acatttcccg cacaaatgct
     3241 cgctcggtgg taaattcact tgcgtccacc acgctgtctt tgcgtaataa gtttaggtgg
     3301 tggattttgt tacgcagtgc ggtgtagcaa tgttgtagct gttcgctttg ttcggaactt
     3361 aaaataccgc attctactgc gctgtcgaaa attcggacat tatccgacca tactgccatt
     3421 ttcgggtgtt ggtggctgtg ggctaatacc aaatattggg cgataaattc aatatcggta
     3481 atacctcctt gatcttgttt aatatgaaat tgctcggctg aatgcgagct taaatgttgg
     3541 tacattttct gtcgcatttc gcaaatttct tggcgtaatt gaccgcttgc acgaggctga
     3601 gcaagcgtgc tttggcggat tttttcaaag gcttgtttga ggttttccgc cccaaataca
     3661 catcttgtcc gcacgagggc ttggctttcc cacgtccacg cttcattttt ttgataatgc
     3721 tcgtaggcat tgaaagtgct gactaaaagc ccagcctcgc ctgatgggcg aagtcgcata
     3781 tccacttcat atagtacgcc ggcactggta ttaaggttaa aaatcgagtt aattttttga
     3841 gccaatttta agtaaaattg atggcttgaa atctcttttt taccgccaac agtttggcta
     3901 tcctctgggg cattatgcaa gaaaaccaag tcgagatctg aattatagcc cagttcaatc
     3961 ccgcctagct tgccgtagcc aataactgca aacccttttt catcagcctc taaatgttcc
     4021 ggcacaccaa agcgttggct gacttgcttc cacgccatat ttaccaccgc attaataatc
     4081 gcttctgcta agtaagtaag atgatcgctg atcttcatta ccagcagcac gcctaaaata
     4141 tcagcagcgg cgatgcgtaa aatttgggtt tgtttgaact gacgtaagcc atcaatcagt
     4201 gcttcttcat cttcttcagg aatgcggatt aaataatcct gcaaggcaga ttgatatttt
     4261 tcaaaagcct gcacgtcggt taagcctcta tggctcatca gctcatcaag tagcattgga
     4321 tatcgagcta tctgttccgc aatcataacc gacttactac acaatgctaa aagttgaggc
     4381 agaatctgct ctttttcgag cattaattcc aaataggtag ttcgggtggt gattttatcg
     4441 acaatattca acacgcgagg caataacaat aaatgatctt cacctttaaa aatgctgtcg
     4501 gcaattctag gcattaaatt gcgtagcacc tctcgccctc ttaccccaat cgggcgtttt
     4561 acccaatctt gaaaggtagt agaaaagtga cggaaaatct ccgtataatc attttctgca
     4621 acctttggat aaccttttag cactgcggat aaatcttcaa ggcgaatgtt atagtgcaaa
     4681 atgtctttcc attcggctaa tttttcatta accggattgc agttggcttg tgtttcctct
     4741 tcaccgataa tttcattaaa aatctggcgt actgcttgtt gatattggct caatactgcc
     4801 ataaattgtt gccaatcgtt aaaggaatgc tccacccaat gcgttttttc gctatataga
     4861 tcttgctgat aatagctttg gcaagcaaat acaaggcggg cttgcgaggc ttcatcagtg
     4921 ggtagggttt gagtttgttt atcgtcaatc gcttgtaata cattttcaat ttgacggtaa
     4981 aaaatatagg cattgtggag cgtttccacc tgcgtttggg ttaataaatt taattctgcc
     5041 aagcgtggta gcacttttaa caggctacgt tcttgtaaaa ttttatctcg cccgccacgg
     5101 atcatttgga aagtttgggc gataaactcc acttcccgaa tcccaccggc accaaattta
     5161 atattatcgg ttaaattacg gcgaaccact tcacggctga ttttttcttt catttcacgc
     5221 aacgattgga ttgcactgaa atccagataa cggcggtaaa caaaagggcg gagcatttgc
     5281 tttaaatagc gatgatttaa attttggcta tcctcgccta aaatttttgc tttaatcatc
     5341 gcataacgtt cccaatcacg cccttgctct tggtaataat cttccattgc agtaaaactc
     5401 agcaccaagg ctccgctatc accaaagggg cgaagtcgca tatcggtacg atacacgaaa
     5461 ccatcagcgg tgatctcatc taatacttta attaaccgct gccccattcg ggtaaaaaat
     5521 ttgctgtttt caatcgattt gcgtccacct tcggtttcac caatatcggg gtaggtaaaa
     5581 atcaggtcaa tatcggaaga aaaattaagc tctcgtccgc ccaatttgcc catacctaaa
     5641 atcagcagtt cttgtgtttc gccaagagtg ttctttggcg tgccatattc ggcacagcaa
     5701 cgctgaaaca accaatctcg agcggctaga atcaggctct cggctaaatc cgacaaatgc
     5761 tgaaatacca attctaccgt cgctaattta tttgactgaa taaagctcag acgagccaat
     5821 tcacggtggc gaaattgccg caaaaccctc cccaacattt cttcattttc cactcttgct
     5881 aatatttttg ctaaacgctc agtataattg cagcaatcat caggcgtagg aaacttggca
     5941 agccattctg ccagtaaatc cggctgtttt tgcaaggttt gatgcacgaa attggaaagc
     6001 gaaatcgccg tcacaagcgg ttgaatttgc tcagaatttt gcaaattggg cggtaaattg
     6061 agttgggata agggaattag ggtggtaagc ataaatttag gctcaaaatt gaaaatagat
     6121 agaattttac gctcgatcaa ttcccctctt tagcaaagag ggcttagggg agatttggca
     6181 gaggtaattt tactctcata cgaaacatta atatcgtaat caaatctccc ccagcccctc
     6241 ttttctaaag aggggagaaa aaattaaaac actcttttaa acggtttaat aatcacatcg
     6301 ctatacacac cggcttccac ataaggatct tggcttgccc attgttgagc ttcttcaagt
     6361 gagttgaact ctgcaattac agttgaaccg gttacgcttg agccgtcttc agtcgggtta
     6421 ggccctgcga ttaataatcg accttctgcc tgtaattttt ccaaacgagc caaatgagcc
     6481 gggcgaactt ctaaacgttt ttccaacata ttgggattat cttgggcaaa gataacataa
     6541 tacatactat tctccttgtt tttcaggggt taaatcaatt agcgataatg cttcgtctaa
     6601 ttcggggtta ttttctctcg gcacagcacg cggtttgcct tctttatcaa tcgctacata
     6661 ggtaaataag gcttcggtta cgagataacg ttcgcgattg ccctcataaa cttgtttgat
     6721 aaagacctcg actttcactt gcatcgaaga acgccctatg tgcattaact tgccgtagca
     6781 gcagaccaca tcaccgactg aaatcgggcg gtggaaaatc attttatcta ccgttaccgt
     6841 aacgactcta ccttttgcca actctttggc taaaattgca ccgcctaaat ccatctgcga
     6901 cataatccaa ccgccgaaaa tatcgccatt ggcgttagta tctgacggca ttgccaaagt
     6961 tcttaaaatc agtttccctt ccggggcttt tccatagggt ttatctttca tttttttgtt
     7021 cctgcttttc agcatctttt aagtaagggt aaaggacgaa accggtaata accgttgcga
     7081 ctaaggttaa gccaataatg ccaaaggatt tgaaatcaac ccaaatctct tccgataaat
     7141 attgactgat ataaatattc agcagcatac aaatcagaaa gaatactgcc caaccgaagt
     7201 ttattttatt ccacactgct tcaggcaact gaatttcttt gcctaataat tttttgatta
     7261 atggtgtttt gaacacaaat tggctcacta atagcaccaa tgcaaacaga gcgtaaacaa
     7321 tggttacttt ccattgtaaa tatttaactt cattaaaata ggcactcagt aagccgaaaa
     7381 agaccaccga gccacccata ataatttgct gtttttcaat tttgccgtag agcattttta
     7441 aggcgatcat ttgcacgatt gtagcgataa ccaatgcgat agacgccatc tgaataccgc
     7501 tcattttata cacgacaaaa aacagaatca gcggaataaa ttcaagtaac tgtttcattg
     7561 atactcctaa cgcactgccg gcatttggcg gtaaacttgg taaaagcgga agctgaaaat
     7621 cgccataaag acgttaatta ccgcacttaa aacaatggta atgaatatgc caataaagtc
     7681 attaccaaac actgtgaaca aacgagataa catccccggt aataaataag aaatcacaca
     7741 aaataaaatc agcggtagca tttttccacg tgataattga agcgtaaatt taatactttc
     7801 cgatagactt ttctgcggtt tctccaataa ataagcataa atcactaacg ataatttgat
     7861 aaaaaaataa aaaccgacta ccaacaccgg caatgcaata atcactgttt caggcgatgc
     7921 cattgcaaaa gatgcaccga gagaaagcgg taacaccatc acaaattgta acaacagcac
     7981 aggtaggaag tgctttaatg cgtttcctgc attttggaaa aattgacgat aattgccatc
     8041 gttaatcgat tggatattga aaatcattaa gacattgatc aaaagattga caacacctaa
     8101 taaaatagtt ggcaatagta tagacaccat tttagaggca tcaatttgaa gttgttgcgg
     8161 ttgcgactcc gccattagct caggcgaatt tggcgacact aaaataaaaa ccaactgcac
     8221 aaccacaatg gtgacaatgg caaacagtga aaatgcttgt tgattacgca taaagttcca
     8281 actttgctgc aataaatcga caaatttaat tgacataaaa tacccttcaa tagattgtaa
     8341 atattttgtt gtgaagtata gcaaggc
//
LOCUS       DANLXB010000110         8340 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLXB010000110 DANLXB010000000
VERSION     DANLXB010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8340
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(129..1493)
                     /gene="mpl"
                     /locus_tag="PXD41_001707"
     CDS             complement(129..1493)
                     /gene="mpl"
                     /locus_tag="PXD41_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL6289225.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(1789..2544)
                     /locus_tag="PXD41_001708"
     CDS             complement(1789..2544)
                     /locus_tag="PXD41_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL6289226.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            2699..3016
                     /gene="metJ"
                     /locus_tag="PXD41_001709"
     CDS             2699..3016
                     /gene="metJ"
                     /locus_tag="PXD41_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL6289227.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            3064..3294
                     /locus_tag="PXD41_001710"
     CDS             3064..3294
                     /locus_tag="PXD41_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL6289228.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            3287..4711
                     /gene="panF"
                     /locus_tag="PXD41_001711"
     CDS             3287..4711
                     /gene="panF"
                     /locus_tag="PXD41_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL6289229.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(4788..5978)
                     /gene="nhaA"
                     /locus_tag="PXD41_001712"
     CDS             complement(4788..5978)
                     /gene="nhaA"
                     /locus_tag="PXD41_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL6289230.1"
                     /translation="MEKLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTI
                     VSVQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVG
                     GMIVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAI
                     IDDLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSV
                     LKSGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLL
                     EMGMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLC
                     GIGFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPEN
                     NATY"
     gene            6146..6574
                     /locus_tag="PXD41_001713"
     CDS             6146..6574
                     /locus_tag="PXD41_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6289231.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            6580..7302
                     /locus_tag="PXD41_001714"
     CDS             6580..7302
                     /locus_tag="PXD41_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL6289232.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            7312..7731
                     /gene="psiE"
                     /locus_tag="PXD41_001715"
     CDS             7312..7731
                     /gene="psiE"
                     /locus_tag="PXD41_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL6289233.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            7740..>8340
                     /locus_tag="PXD41_001716"
     CDS             7740..>8340
                     /locus_tag="PXD41_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL6289234.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQL"
BASE COUNT         2396 a         1827 c         1701 g         2416 t
ORIGIN      
        1 tcgctatttt caataaaaca tgtataaata tccagaattg attttgaatt tttcgatgca
       61 gatcacaaaa atagagagtt atacaaacaa gcggtaaaat tttgtaaaaa atttaccgct
      121 tgtaaaggtt acttatcagc taatttggca agtagttttt gatgaatacc gccaaaggct
      181 ccgttgctca tcactaagat gtgatcggtg ggtttggctt ctttgacgac tagatcgact
      241 aaatcatcaa tatttgccga ccaatacgcc ggttgcgata acacattggt aatctcgctc
      301 acactccacg caataatatc aggctggtaa acaaacactg cttcggcatc gtgtaggctt
      361 ggggctattt catctttatg gacacccatt ttcattgtat ttgaacgagg ctctaacact
      421 gccaaaatgc gttgattttt gccgacttta ccacgcagag catcaatagt cgcttctatc
      481 gcagttgggt ggtgagcgaa atcatcataa acggtaatgc cgtttacctc gcctttcact
      541 tccaaacggc ggttagcatt cacaaacttg cctaatgcct cgcaagcccc ttgcacttca
      601 acccctgcgt gatgagcggc ggcaatcgcc atcagagcat tatgcatatt gtgcttgccg
      661 ataatcgacc aatgcacctc gccttgttta acgcctaagt gaaacacctc aaactgtgag
      721 caatcggcat ttaacggttt agcaaaccat tcgttctgtt cgccaataaa ttgaagctgg
      781 ctgtaactgc ccatttttag tgtatcttgc acgttttgat cagcgattgc cgacaaaata
      841 cagccacttt gtggcatcgt gcgaacaagg tggtggaact ggcgttgaat cgcttttaaa
      901 tcatcaaaaa tatcggcgtg gtcaaattcc atattattga taatcagcgt tttcggggtg
      961 taatgcacaa atttagaacg cttatcaaag aacgcagaat cgtactcgtc cgcctcaatc
     1021 acgaagaatg gactgttacc ggcacgagcc gaaatgccga aattaccggc aacaccgcca
     1081 attaaaaagc cggtatcaat cccattttgg tctaaaatcc acgctaacat tcctgttgtg
     1141 gtagttttgc cgtgcgtgcc ggaaaccgcc agcacccatt tgtctttaag caaatgatcg
     1201 tgcaaccatt gcgggccgga ggtgtaattg agttggttgt ccaacacata ttccacgcac
     1261 ggattaccac ggctcatcgc attaccaatc accactaaat caggagccgg ttgcagttga
     1321 gcaacatcgt aattcgggat aatttcaata ccgtgagcag ctaaaaaggt actcatcggt
     1381 gggtaaacat tagtgtctga gccggtcact ttatagccaa gctcacgggc aatcattgcc
     1441 acaccgccca taaaggtgcc gcaaatgcct aaaatatgga tatgtttttt catcttttta
     1501 tatttaaaat gttagaatca tcccctctcc ccttgtggga gagggataga ttttttcttc
     1561 gtgcagaaga aaaaatcagg gagaggggta agcggtcatt tttaggctta atattgtaag
     1621 ctccctctct ctgaaaaata tttctgaacg aaatattttt cggtctcaat actcgctacg
     1681 ctcgctcctg tggagccgtt ggcaaagcca acgttcaaat gtaaacattt gtcccacaag
     1741 gggagaggtg cgctttagat gaggcgtacc atccctcgtt cacatcaatt aatcaatatt
     1801 cttcaactct tcttccgaaa gctgctcttg ttggctttgc tcaacattgc catctttcac
     1861 tttaaattca aggttttgga aataagcttc acggaaggta acataagggt cttgagcttg
     1921 ctctaacaac gcatcttgtt ctaataattt agaacgggta tctacccctt gtaccacaaa
     1981 tttagcgata gaccaaggtg acccaacata agtcagcacc gaataaccgg tttccaccgc
     2041 actaccaata ccttgacgag gtgtggttgc tccataagcc ggcatcataa tataggagcc
     2101 ggaaggcacg ccgtgagcgc ctaaactctc acctaaacca cgttgtccgt tatttaaacg
     2161 taacccctca tctaaactcg cccagtcaat taacccacct aaaccaaaca cagtgttgat
     2221 ccagaagcgg ttgaagtgaa ccatcgcttt tttaccttct ccttcaatta agcggtttac
     2281 aaagctcacc ggctcatcaa ggttattagc aacattaatt aagcctgttt taaccgggct
     2341 tggtacatac tctttccaac ctttagctac cggttttaac acataagggt ctaaatagtc
     2401 gtaattgact ttccacatcg cacggttaaa cccctcaagt gggtcgtctc gcacgccggt
     2461 ttctgggtta atgcttgatg aacaagcggt taaaaatgcc acactgagta gcataaacat
     2521 cggtttgaac gacttgagtt tcataaattg aaccttttgc agagaaattt gtccattgta
     2581 gcgaagttga taaaaaatac aaaacaaaaa gccgttttgc ctctagaaat ctagacgtct
     2641 agattgagat atagttcgct tttgattaca atacaggcaa catttaagga gcaaacaaat
     2701 ggcagactgg aacggcgaat atattagccc ttatgccgaa cacggcaaaa aaagtgaaca
     2761 agtcaaaaaa gtgacggtat ccattccaat taaagtattg gaaattttaa ctaatgagcg
     2821 aacccgtcgc caaatcaaaa atcttcgtca cgcaaccaac agcgaattat tgtgcgaggc
     2881 ttttttgcac gcctttaccg gtcagccttt gccgaatgat gaagacttga tgaaagacag
     2941 ggcagatgaa atccctgaag cggcaaaaca aaaaatgtgt gagctgggaa tagacccgga
     3001 cgaatggcaa tattagacac accttgcaac tgcgaggttc tttttatgtt ttaaggagac
     3061 tttatgtatc aacaattaac aacagaagca cgttgggctg tgttgcttac gctgatttat
     3121 ctgctcggct gggtaggttt tgcttacttt tcaccgcaag gcagaggcat tttcggcttt
     3181 ccgatttggt ttgaactttc ttgcattttc ttacccgtac tatttagctt agttgccacc
     3241 attgtcgtca aaaaagtgta taaaaatatc gatcttgagg tgaataatga atagtgaaat
     3301 gattttaccc ctgattgctt atttaatttt tgtgtttggc gtagcgtttt atgcttaccg
     3361 taaacgccaa ggcggaagct ttatttcgga atactatatc ggtgggcgtt caatgtcggg
     3421 ctttgtgtta gcaatgacaa ccgccgccac ttatgtgggg gcaagttcct ttatcggtgg
     3481 gccgggtgct gcctataaat acggtttagg ctgggtgtta ctggcaatga ttcaagtgcc
     3541 cgcagtgcta ctctctcttg gagcattagg caaaaaattt gccttacttg cccgcaagca
     3601 taatagtgtc accattaacg atatgttatt agcccgttac caaaacaaat ttgtggtttg
     3661 gattgcagga ctagccttat tactttcgtt ttttgcgatg atgacggtgc aatttatcgg
     3721 tgccggtcgc ttacttgaaa ccacactcgg aatcccttac caaacagcgg taatgatttt
     3781 tgccatcaca gtcgggcttt atacctttat cggcggtttt agagcggtgg tgctaaccga
     3841 tactattcaa ggtttagtaa tgatagtcgg cacaagcatt ttactcgctg gtgtgattta
     3901 tgccacaggc ggagtggaaa atgcaatgca cacccttgaa gccattaacc cacaacttac
     3961 caccccttac ggcattgacg aacgcccgct tgatttcacc tttatgactt cattttgggt
     4021 attggtttgc tttggtttaa tcggcttacc gcatattgcg gtcagaagta tggcatgcaa
     4081 aaacagccaa gccttgcacc gagcaatgat tatcggcacg gtagtcattg caattctaat
     4141 gtttggaatg cacctttcag gcgtattagg cagagcggtt gtgcctgatc tcaaagtgcc
     4201 ggatcaagtc attccaacac taatggtaca agtgctacca ccggtggttg ccggtatttt
     4261 ccttgccgcc ccaatggcag cgattatgtc ttcgattgac tcaatgttga ttcagtcgtc
     4321 ttcaacctta attaaagatc tctatctggc aattaagccg aatgccatta ataacgagaa
     4381 aaaaatcaaa ttgttctcca ctattactac tcttactttt acggtattac tcgtgtttgc
     4441 cgccctaacc ccgcctgaga tgttaatttg gctgaaccta ctctctttag gtggtttaga
     4501 agcgactttc ctatgggtaa ttgtactagg gttgtattgg gaaaaggcaa atgccaccgg
     4561 tgctatttac tcaatgctgg caggcttaag ttgttatgta ttaatgacta cctttaagat
     4621 tgctattttt agcttccacg ccattgtgcc ttcactgcta attggtttga ttgctttctt
     4681 aatcggcaac cgatttgctc ctaaggtgta aaataaaata ggcatagtgg tatggaagtt
     4741 cactatgcct attttgcaaa atttccgctc aattcaaccg cttgtagtta ataagtggca
     4801 ttattttctg gattattctg cttagtcgcc attctaagta acgtataacc taaaatcgct
     4861 gaaaccgcag agccgagtaa aatacctaat cgagctagag cggtaatact ttccccagcc
     4921 tcacttacat caaaggcaag acttgctaag aacatcgaca ttgtaaaacc gataccgcat
     4981 agcaccgcaa tggcaaaaat ttgcttaaaa ttaacccctt gcggcaggct ggcaaggcgg
     5041 aataatactg ctaaataact aaaaccgaat acacctaagg ttttgccgat aattaagccg
     5101 agcgcaatac ctaacggcaa tggtgatgag agttgctcca ttcccatttc taataagtaa
     5161 acgccggcat tagcgaaggc gaagatcggt aaaatcatat aagcacacca aggggcaaga
     5221 atatgttcta gctcctctgc cggtcgttcc ccatgtttac ctttcagcgg tacgcagaag
     5281 ccgatgatca cgccggcaag ggtagcgtga acccctgatt ttaaaacgga agtccatagc
     5341 actaagccta ctaccaaata agcacagagt gaggtcactt taaagcggtt aagtagcact
     5401 aagccgataa tcgcaatcgc ggcaatagtt aaggcttgca cactgatttc ttgcgaatag
     5461 aaaatggcga ttaccacaat cgctcctaga tcatcaataa tcgctaatgc caacaaaaat
     5521 gcctttaaag ccaatggcac acgagtgcct aataacgcca caatgcccac cgcaaaggca
     5581 atatcagttg ccattggaat tgcccaacca ttatgatatt cagggtggtt ttgattaatc
     5641 gcccaataaa taatcgctgg aacaatcata ccacctactg ctgctatcgc aggaaaaata
     5701 gctttcttat aacttgaaag cgaaccttca aacaactctt tttttacttc cagccccacc
     5761 aacgtaaaaa acactgccat taagccatcg ttaacccaga gtaatagcgg tttattcaag
     5821 gcaaattcac caaactgtac actaacaatc gtttgtaaaa actcaaaata gaaatcactt
     5881 aaggaggtgt tggcgcacac aattgctgca aaagcaaaaa ccagaagcaa tacgcctcct
     5941 gaggcttcag attttaaaaa ttcttttaat ttttccactt aactttctcc tattaatatt
     6001 tgtttattgt attttcattt ctatacattc catcttttac caaaaatttt gcgaagatca
     6061 aatagaaaat ttgataaact agaactaact cgcattttat tgctccatat gattagaaat
     6121 taacctaaaa tattaaaatt ttgttatgac acacgattgg ctctattggg cattagcctc
     6181 tgcacttttt gcagcattaa ccgccatttt tgccaaagtt ggcttacaag gcgtagattc
     6241 tgatttcgcc acttttattc gcacggtagt tattattatt gcacttattg cctttctcac
     6301 ttacagcgga aaatggcagc cgttagatag cttgagcagc aaaaactggc tgtttttaat
     6361 cttatccggc ttggcaacag gattgtcttg gtcggcgtat ttcaaagcat tgcaaatggg
     6421 taatgcttcc caagtcgctc caatcgataa attcagcttg gtgttagtta ccctttttgc
     6481 agtaattttc ttaggcgaac gcccaagcgg acaagattgg cttggcattg gcttagttgc
     6541 tggtggcgta ctgttacttg ccttcaagcg gtgattttta tgcaaaattt tgcaaatatt
     6601 gaaattgcgt ttattcatcg gaaagcacct ctgccgagtg atttctccta ccctgaaatg
     6661 cccggcggtt taactgaaaa acaggtgcaa aaatggcaaa gccgccgagt cgcctttttt
     6721 ctgctgacgg aattgtttaa aaaacaccat ctggatttag atttattagc tgatatgcaa
     6781 cgctccccaa gcggtcgcac ttttgtcgat tctgagcaaa ttgactttaa catcagccat
     6841 tcaggggaat ggatagcggt cattttttcg tattcttttg caaaattagc ggtcggcatt
     6901 gatattgaac acccacaaaa aatcagacgt taccacgatt taatctgcca ttacggaaac
     6961 gctgaagaac aaaatgtttt attagccaac cactccccca ttctaagcaa cctcgccgaa
     7021 cgcttttatt tgagctggtg cttgcgagag gcgatattga aatcgcaagg ggtggggatt
     7081 gtgaaactgt ccgaagtaaa acatttaccg ttagaaaaac agatcttttc cgcccattgt
     7141 ccgaaaggca agctgcattt tgtgagcgaa ctgccgttct atttaagcta cttctatcaa
     7201 caacctcaaa atatgctatt atctgaacct ttgctatacc attggcaaaa cgggcagttt
     7261 cagcctataa agtgccaatc acttgtttat gatgttaatt aaggataacg aatgcctaaa
     7321 aaatctttag aagaacacca ttccagtttt ggcaaaattg cttccgaaac ctttcagtgg
     7381 attatgaata ttgccttgct agtaacagga gcattgcttt cttactcgct gtttgctgaa
     7441 gcctattcac tctatgaact ttcctttagc gacagtgaga aattccaaat tgtagaaaaa
     7501 atagtaattt tctttctcta ttttgagttt cttgcgttga ttgtgaaata tttcaaatcg
     7561 aattatcact ttccgttacg ctatttcctc tatatcggga ttactgccat ggtgcgtttg
     7621 attattgtcg atcattctaa tgcgttgcat acactattat tcgcactctc tattttggtg
     7681 atgattatag cattatatat tgtacacacc gatcgtttac ataaaagcta ggaactaata
     7741 tgaagctaac ccaatatcag cacaatgatt tacagattct aaaccgagaa accgtctata
     7801 aagggcattt tgagctacaa aaaatcactt tccgccataa gctgttttcc ggtgaaatga
     7861 gcggtgaagt ggtgcgtgaa ctcttaatta aaggcgaagc ggcggcttta attgcctatg
     7921 atccaacctt agataaggta gtattaattg agcaagtgcg gattggagct tacgatgcag
     7981 gacagaaaaa atccccttgg ttgctggaat tggttgccgg tatggtagat aaaggcaacg
     8041 aagagccggc agaagtggca atgcgtgaag ccaaagaaga agccggcttg gaagtcacaa
     8101 cagtgcaaca cgccttaagc gtatgggaca gtcccggtgg acaactggaa cgcttgcacc
     8161 tgtttctcgg cttgattgac agcacccaag tgaaatccgg cgaggtacac ggcttactgg
     8221 aagaagaaaa tgaagacatt ttggttcacg ttgtaagccg tgaacaggca tatcaatggg
     8281 tagaagacgg cacaattgac aatgtgattg cggtaattgg gctacaatgg ttgcaattaa
//
LOCUS       DANLXB010000111         8320 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLXB010000111 DANLXB010000000
VERSION     DANLXB010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..547)
                     /locus_tag="PXD41_001717"
     CDS             complement(<1..547)
                     /locus_tag="PXD41_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL6289235.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
     gene            complement(614..1198)
                     /locus_tag="PXD41_001718"
     CDS             complement(614..1198)
                     /locus_tag="PXD41_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL6289236.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            complement(1330..2514)
                     /locus_tag="PXD41_001719"
     CDS             complement(1330..2514)
                     /locus_tag="PXD41_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6289237.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            complement(2597..3460)
                     /gene="rapZ"
                     /locus_tag="PXD41_001720"
     CDS             complement(2597..3460)
                     /gene="rapZ"
                     /locus_tag="PXD41_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL6289238.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            complement(3473..3985)
                     /locus_tag="PXD41_001721"
     CDS             complement(3473..3985)
                     /locus_tag="PXD41_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6289239.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            complement(4027..4752)
                     /gene="lptB"
                     /locus_tag="PXD41_001722"
     CDS             complement(4027..4752)
                     /gene="lptB"
                     /locus_tag="PXD41_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL6289240.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            complement(4764..5270)
                     /gene="lptA"
                     /locus_tag="PXD41_001723"
     CDS             complement(4764..5270)
                     /gene="lptA"
                     /locus_tag="PXD41_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL6289241.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            complement(5294..5878)
                     /gene="lptC"
                     /locus_tag="PXD41_001724"
     CDS             complement(5294..5878)
                     /gene="lptC"
                     /locus_tag="PXD41_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL6289242.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            complement(6032..6835)
                     /gene="xthA"
                     /locus_tag="PXD41_001725"
     CDS             complement(6032..6835)
                     /gene="xthA"
                     /locus_tag="PXD41_001725"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL6289243.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            complement(6933..8309)
                     /locus_tag="PXD41_001726"
     CDS             complement(6933..8309)
                     /locus_tag="PXD41_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL6289244.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
BASE COUNT         2311 a         1663 c         1678 g         2668 t
ORIGIN      
        1 catatttagc tcttaatata ttttctaact gttgcccttc ttcagctaat tgattcaatt
       61 ttgtttgtaa ctcgccaaat gctttatgtg cttccggtgt aggatttttc tccattttag
      121 caccttctac gatcatctga gcccctaaag tcaggacttc taaggttttg tcttttagtg
      181 ctttgacttc attattttga atattcaggg tttcagcact tatcttaata tgatcaattt
      241 gagctaataa tgcgttatta actgtctctt gcattaaggt agaatcggct ttttgtttgt
      301 cagtaagtgt ttctgttgcc gctttaattg catcatttaa ggctttttct tgagtgtctt
      361 gccattcccg taacatttta taatcttgag cgccggtatc agcaggttta acttcttctt
      421 ttgactcttc tttcacttga actggcgatt ctgctgagct ctgtgttttg gtagaattag
      481 gttgttcgca agcggttaaa aaaagggtaa ataatacaga taggctaatt ttagcgagcg
      541 tgttcatagt aatccttagt aattgcaaaa aaaagctaga gcaaaatact ctagcttttc
      601 attgaatggt aaattattta gctgagaatc tttgctgtaa ttctacgttt aatttttgta
      661 actcattacc agcttcaatt aaagactgag ctttttgttg tacggcttgt aatgctgctt
      721 ggtcatttgg tgtagagatc gtttttactt gttcagaaat cacttcactt gaaagtgtta
      781 aaactgattt tgttttttct ttaaatgttt tgatttgtgc atcagatact tcaatcgcat
      841 ctaagctttt tacagtttct tctacttttt tattaaatgc acttaatcct tcttgaattt
      901 gtttaggatc ttgtgtagct aatttctttt gtagttctgc ttgtgctgtt gccattgtgc
      961 tttcttgtgc cgtattccaa tcaactaatt tttggtaatc tgcttttgca gcttcgcttg
     1021 gagcggctac agctgtttca gcaggtttgg ctgcttctgc agcaggagct gttgtagttg
     1081 gtgcagcttc agttgttttt gtaggttctg ttgccggtgc tttttctgct ggtttatcac
     1141 aagctgctaa gaataatgcg actaaagcgg ttgcactgat ttttgttaat ttgttcatta
     1201 aaaaattcct caagaatata aaaataaaag ccaataaagg ctggttattg taccaataaa
     1261 tagacaagta atctccgtat tagttcataa aatcgttcat ctttacgtta tttcgaaaaa
     1321 atttacattt tataagtaaa tagcttgctg aataagctgc tttttcacaa aaggcagctg
     1381 gttggttagg cttaaaccaa ttcctctgaa taatttttta agcgggtgat tgccgtcaaa
     1441 tagctgtttt aatccttcca ttgtggctaa taatttcatc gcttgggctt tacgctcacg
     1501 ttcaaattgg cgtaaatggc ggtattcacc aatatcttgg ttgtttacca actgtttttg
     1561 gatttcgttt gccagcgttc tggcatcggc aaagcctaaa ttgacaccaa gtcccgccaa
     1621 tgggtgaatg gtatgagcgg catcaccaat caacgcaata cgaggttggg caaagtcacg
     1681 gcagaagcgt gctgcaagcg ggtaaatttc acgcaaactt tgcacttcac ataagccaag
     1741 ctgattatcg aaggcaatcg ttaaggcttt attaaattcg gcttcgcttg cattttttaa
     1801 ttcattggct ttgtttggtg gcagcgacca aacaatcgag cagagatgct catctgccat
     1861 tggcagaaaa gcaaaaatgc tatcttcagc aaagatttga cgagcggttt tgccgtgctt
     1921 ttcggttgtt ttgacattac agactaaggc ggtatgttga taatctttac tggtaagcgg
     1981 cattttcatc tggttacgca cccacgaatt tgcaccgtct gccccgacaa ccaatttagc
     2041 agacagcatt tcgccgttat ctaaggttaa aaatgccccg ttttcgctca cgcccagagt
     2101 ttggggggcg gcgataatat attctacatt agcttgttga gaaacctgtt gccacaatgc
     2161 gtgttgaatc accgcatttt ccaaaataaa gccaagttgt gaaagtccta attgcttgat
     2221 ttcattatca ttattatcaa aatggatatt agcaaagctg tctttttccc acactttcat
     2281 ttcggtgtaa ggagaaaggc gttgagccgg aatgtgttga aaagcaccaa tctgttccag
     2341 tattttttgg cttgaagcat taatcgcact tacacggtgg taaatcgtat cggcatcaaa
     2401 tttgggcgtg tttttctcaa taattttaat ttggcaatcg acatctttga gcagtccggc
     2461 aagagccagc ccaaccatac cgccgccaac aataacaata tctgcggatt tcataaaatc
     2521 aaatgtaggg gcggtgccct gtgcccgccc taaaatagtt gaaatgaggg ctggcacagg
     2581 accagcccct acttatttaa gatgtttttt tatggtgttt ttccaaactt ttatgccgaa
     2641 cttgcacatt tttgcctttt gcttggaaat attttgccag ttgctcggca ataaatatgg
     2701 aacgatgttt tccaccagtg caaccaatcg caatagttag gtagctacgg ttattttgtt
     2761 ccaacatcgg cagccacatt tctaaataat tgcgggtttg gtaaataaaa ttatgcactt
     2821 cggtttggcg ttctaagaaa tcaatcaccg gttgctctaa gcctgtcatt gggcgaagct
     2881 ccggattcca atgtgggttc ggtaaaaagc gaacatcaaa aacgtaatcg gaatcggcag
     2941 gtaagccgta tttaaaaccg aatgattgga aaataatttt aagctctttt tcggttgagc
     3001 cttgcagtat ttggcgaaga ttttccgcta attcgtgcga agaaagatga ctggtgtcaa
     3061 taatataatt tgcattttgc accaaaggct caagcaattt ttgttccaaa tccaatgcac
     3121 cttctaacga gagatcgtct tgggtggaaa gcgggtggat tcggcgggaa tcgctataac
     3181 ggcggattaa ggtattgcgt tcgcaatcta aaaaaatcag cttagcattt aaaggctcaa
     3241 gctgggtaag caattcttca atcgcattag gcgtattcgg taaattacga atatctaagc
     3301 tgatgactgc cgaacgattt tcttgagtaa ggtagtaggt taaggttgga attaaaggta
     3361 aagggatatt atccacgcag taataacctg catcttctaa tgctcttaat gctaccgatt
     3421 taccagagcc tgagcgtccg cttataatga ttaattccat atttcctcag tattattctt
     3481 catcttttag gtgattatca gcatacacca aaatttgcca aatatcttct gcggattcag
     3541 ctgctcggag ctgttttaat aacgatttat cggtaagttt ctgtgcaatt gcaggtaggc
     3601 aacttttata ctgttcgcag ctattttccg gaaacatcat tgcataaatt aaatccactt
     3661 ctttgttgtc ttgggcttcg tagtcaatcg cttcttccag ttgtaaaaag accgcaatcg
     3721 gtttagtcag ctcaatatca ccgcaagcgg gcaattttgc atgaggaagt gcaatgcctt
     3781 gatttaagcc ggttgtgcct aacttttcac gtttaaataa attgccaaag cattcaatag
     3841 ggcagagtgc ttcagattgc tgttcggttt ggttgattga ttcagccacg attttaccca
     3901 cgagttctaa cgctcgtttt ttacttgaaa tcagtacacc ttggcgaaca ttttcagggc
     3961 ttagaaattc ggttagtttt gtcataattt ttcatctaaa gatgaaatcc ccaaagaggg
     4021 gattttttag agtttgaatt gatcgcctaa ataaacacgt tttacatcag ggttttcaag
     4081 cacttgctgt ggtgtgccgc tggcaatcat ttcgccgcta ccgacaatgt aggctctttc
     4141 acatacatct agagtttcac gtacgttatg gtcggtaatc aataccccta aaccacgctc
     4201 ttttaaattg acgataattt ttttaatatc aattaccgag attgggtcaa ccccagcaaa
     4261 aggttcatct aacagaataa atttcgggtt cgctgctaat gctcgggcaa tttccacacg
     4321 gcggcgttca ccacctgaaa gtgattgacc taaactattg cgaatatgct caatatggaa
     4381 ttctgtaatc agctcttcgg cacgctcttt acgctgttta tcattgatat ttttacgcac
     4441 ttgtaatacc gacattaagt tatcgtacac acttaaacgg cggaaaatag atgcttcttg
     4501 cggtagatag ccaatccctt gttttgctct gtcgtgcatt ggtagtgtgc tgatatcttg
     4561 gtcgtcaata cgaattgtgc cgtggtcgtg gcgaaccaaa cccacaacca tatagaaagt
     4621 ggtggtttta cctgcgccgt tcggaccgag caagcccacg atttcacctg atttgacatt
     4681 caggctgacg tcttttacca cttggcgttg tttatagctt tttgctaaat gttcggcata
     4741 aagcacagac atatcattta accttatttt ttcttgttat cttgaagttc atttggaatt
     4801 agcacggttt tcactcgggt tttaccgcca ctggtagctt taagttgttg ttttttcaca
     4861 tcataggtaa ttttattggc tttaataaag ctaccttgtt gtttgagttc cgcattgcca
     4921 atcagcgtta aaaattcaga gtttaaatca taatgaacgc tgttgccttt accgtttacc
     4981 ggtttaccgt tatctaaggt ttgttggaat gttacaggtg agcctgtagc gtcaatagtt
     5041 tcttttttac cttcttgacg ggtaattttg acgtttgctg cggtcacttt aatcgaccct
     5101 tgagtgataa cgacattatc gctaaaggtc acgatattgt tagtcatatc taacgattgg
     5161 ctacctgaat caatattaat cggctgatcg gtatcgcctt ttagagcata agcggaaaag
     5221 ctgctaccca gtaacacgct cactaaaata gatttaaaca ttaatttcat tgttattcct
     5281 tgttccaagc aaattattct ttagtttctt gaataatggt cggttcaatg taagatttta
     5341 catctttttg caaagtcgca acttgttgtt ttaagttacc ttttaatcca acccccgttg
     5401 tagtaaaacc ggaacctatc gatttgaccg tactttcggt aaaaatatcc tgtgtattta
     5461 aatcaacagt taacgtatcg gtagtgattt gttgcaaacg tgatgcagga tctaatgcaa
     5521 caagtttgat attacctttt aaatttaaca ttttttcttt ggtaatttct gcataatcgg
     5581 cactgacttt ccactgtttt tgcgtcgact ctttggcaaa aagctcaata aaaggtttaa
     5641 aaaactcagt acgctcagta gactcatagc gtttaatttc agtagcttga gcgaaatatt
     5701 gtgggtttcc ttttagatca tagaccgtgg tggacatttt attccccaca tattcaggct
     5761 gtccttcctt tttaataagc tgatcaagcc ccgtattctc tttctcttgt aagctgtaat
     5821 accagccacc aagtacggca acaataatca gtaaaataac ggttaaacgt ttgttcataa
     5881 tccaaaaata atctaaaaat agtgtttgat tgtagcacag atttgaatag ggatatagta
     5941 cagcgtaaaa agtgcaaaaa agtgagaaaa aataaccgct tgtagggcta aaaactgaca
     6001 agcggttgaa aactcagatt tttttgcaac tttatttaaa ggttgcccaa acaggggagt
     6061 ggtcagacgg tttttccatt gctcgaatgt ctaaatcaat gcctgtttcc acgcaacgct
     6121 cagcaagtga ttttgaagca agaattaaat caatacgcaa gccacgatta tcatcaaaac
     6181 cttttgaacg gtagtcaaac caagagaact tatcgttcac gtctgggttg cctgcacgga
     6241 aagtatcaac caagccgtag ctgtataagc gatctagcca ttcacgctct tcgggtaaga
     6301 atgaacattt accgtcacgc agccagcgtt tgcggtttgg ctcgccgatg ccgatatcca
     6361 aatcagtcgg gctgatgttc atatcgccca taataataat cggattttcc ggctttaatt
     6421 cgctttccaa gtagttctgc aaatcagcat agaatttttg ttttgccggg aatttggttt
     6481 cgtggctgcg attttccccc tgtgggaaat agccgtttaa tacggttagc acgccgaaat
     6541 cggtctcgat atccgccata atcattcgtt tttgagcatc aagtacatct gtcgggaagc
     6601 ctttacgcac cgctataggc tcttttttag tcagtaatgc cacgccgtaa tgacctttct
     6661 gcccgtggtg gaaaacgtgg tagcctaagt gattgactaa atcgtaagga aaatcttcat
     6721 cggcaacttt gatttcttgt aagccgagta catcgggctg gtgtttttcg ataatcgctt
     6781 cgagctgatg tggtctggct cgtaatccgt tgatattaaa agagataaat ttcattggtg
     6841 atcctaatgt ggtttgcaaa ataaagaaga aaatagaccg cttgtaatgg ctacaagcgg
     6901 tcatttttag caaaaatttt gcatattata gcttaaagtg tcattgctgc aatccagccg
     6961 aacactaata atggaatgtt aaagtggata aaagttggta caacagaatc ccaaatgtgg
     7021 tcgtgtttac cgtcagcatt caagccggag gttggaccaa gtgtggaatc tgatgccgga
     7081 gaacctgcat caccgagtgc agcagcaaca ccgacaatcg ccattgtcgc cagtggcgag
     7141 aagccaaatg agatacaaag cggcacataa attgaggtaa tgatcggcac agtcgagaat
     7201 gaagagccga tacccatcgt aataaataag ccaacgacta acattagcaa tgctgccatt
     7261 tcttttgatg aaatcacatc acgcaggctt tctaccaatg ccggcacacc gcctgttgaa
     7321 ttgaccacgc cggcaaaacc ggaggcggca atcatcacaa agccaatcat cgccattaaa
     7381 cgtaagccag cttggaagac atcgttactc tctttcagtc taaatacacc gcctaaggcg
     7441 aaaataacca gaccgactaa gccgccgata atagtcgaat ttgttgctaa ttgcaccgaa
     7501 caggtcgcga taatcgccac aatactaatg ccgatatgga agggcttaac gtttgcaaca
     7561 cgggcttcaa tatcatctgc ggttggttca ggcatatttt caatatacac acgcggttta
     7621 cggtatgaca caaagaatgc aaacagtaag cctaaaatca taccggaaac aggaattaac
     7681 atcgctttgg tcatttccgc tgtggtagtc actaattgga acggttcacc tgcttggttg
     7741 atatttttaa ctaagatgct ttcaataaag atctgaccga aacctgccgg aattaacata
     7801 taagtggcgg ttaaaccaaa ggttaaagca caagctaccg cacggcggtc aatttgcaat
     7861 ttattcatta cgcttaatag cggtggaatt aaaatcggaa taaaggcaat atgaattgga
     7921 attaggtttt gagatgacat tgcaaatgcc actaacacaa ataatacaat gtatttaaac
     7981 caagtaacgg agcgacctga cgggctgtga ccaaaggatt tgatcacttt ataggctaat
     8041 aaatcggtca cgcctgattt tgatagagct acggcaaacg caccaagaac ggcatagttc
     8101 atagcagttt ccgcaccccc acctaaacca ccagtaaaac tttttattgt tttttccaat
     8161 gcttcggtaa atccagcccc ttctacacca agattaccga ttagaccgca agtaagggca
     8221 gaaataataa gtgcgattac tacattaatt ctaagcaagc ttaggattaa cagcacgata
     8281 atcgaaataa agacttcgtt tgataacatt gtgtttgatc
//
LOCUS       DANLXB010000112         8297 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLXB010000112 DANLXB010000000
VERSION     DANLXB010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8297
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            6..530
                     /gene="proQ"
                     /locus_tag="PXD41_001727"
     CDS             6..530
                     /gene="proQ"
                     /locus_tag="PXD41_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL6289245.1"
                     /translation="MEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPLKVGL
                     FQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVTEDEA
                     THAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNLPKAS
                     EEKLAALADKFGRK"
     gene            616..2628
                     /gene="prc"
                     /locus_tag="PXD41_001728"
     CDS             616..2628
                     /gene="prc"
                     /locus_tag="PXD41_001728"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL6289246.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            2746..4251
                     /locus_tag="PXD41_001729"
     CDS             2746..4251
                     /locus_tag="PXD41_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL6289247.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            4421..4975
                     /locus_tag="PXD41_001730"
     CDS             4421..4975
                     /locus_tag="PXD41_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL6289248.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            4992..5621
                     /locus_tag="PXD41_001731"
     CDS             4992..5621
                     /locus_tag="PXD41_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6289249.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(5656..6027)
                     /locus_tag="PXD41_001732"
     CDS             complement(5656..6027)
                     /locus_tag="PXD41_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL6289250.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(6030..6389)
                     /locus_tag="PXD41_001733"
     CDS             complement(6030..6389)
                     /locus_tag="PXD41_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL6289251.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            complement(6402..7001)
                     /gene="rnhB"
                     /locus_tag="PXD41_001734"
     CDS             complement(6402..7001)
                     /gene="rnhB"
                     /locus_tag="PXD41_001734"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL6289252.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            complement(6998..8035)
                     /gene="rsgA"
                     /locus_tag="PXD41_001735"
     CDS             complement(6998..8035)
                     /gene="rsgA"
                     /locus_tag="PXD41_001735"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL6289253.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
BASE COUNT         2557 a         1478 c         1800 g         2462 t
ORIGIN      
        1 agcaaattga gcaaaaagta gaacaaactc agaataaaac caatccaagt accaaggaag
       61 tgattgctta tttagcggag aaatttccgc tttgtttcac gcttgaaggt gaagtaaaac
      121 cattgaaagt tgggttgttt caggaattag ctgaagcatt aaaagatgat gagaaaatca
      181 gtaaaacgtt attgcgccaa gtattgcgga attacactaa ttcttggcgt tacttggctg
      241 ccagccaagc taatgttgct cgtgtcggct tacagggtga agaagttggc gtggtaacag
      301 aagacgaagc tactcacgcc gcagaagctt tggctgctgc gaaagcggtg gttgcagaac
      361 gtaaagcaca agagcgtaaa gcacaacgta aagagtactt caaacagaaa gcacgtgaag
      421 aaaatgcgaa aaagcgtgca gaatttaagg cgaaaaaagc aatagataat ttacctaaag
      481 cttcagaaga aaaattagct gcattagcag ataaattcgg tcgtaaatag ttttcaagtc
      541 gctttgtgct tacaagcggt cggattttag taaaattttg caaaaaaatg accgcttgat
      601 tatttggaaa agaagatgaa attaacaaga ttaaataaaa tttttgccct agccctaggt
      661 ttaatgatag gaaacgcttt tgccgttcag ccggacatta aagaaagtgc gattgtgatg
      721 ccaaaaccta atgagcagca tagcttatca accaagcgtg taacagcccg attaactcaa
      781 tcgcattatc ataaatttca actgaatgat gagtttgcag ggaagatttt taaccgctat
      841 gtcgattggc ttgatccttc tcataatact tttcttcaag ccgatattga tgaaatgcgt
      901 agtaaatatg ctacaacatt agatgatgat ttatatgctg gtaaattaga tgcagcattt
      961 gcaatgtatg agttaatgtc taaacgtcgt tatgagcgtt atagctatgc cttatcttta
     1021 ctagataaag agcctgactt aaaagggaat gatgaaattg agattgaccg tgagaaggcc
     1081 gcatttccaa aaagtgtaga agaggcaaat acactttggg agcagcgagt taaaaacgat
     1141 attatcaatt tatatcttaa agataaaaaa tggcctgaaa ttaagaaaac actcactaaa
     1201 cgttataact ttgcgattaa gcgtttaact caagttaagg ctgatgatat tttacaaact
     1261 tacttaaatt cattctctcg tgagatcgat ccccacacta gctatttgtc tcctcgtgcg
     1321 gcaaaagcgt tccaagagag catgaatctg tcgctagaag gaattggtgc aacgctaacc
     1381 caagaagatg atgtaaccag cattagagca ttagtgccag gagcccctgc cgctaaaagt
     1441 aagaagctgg tagtcggcga taaaattgtc ggtgtaggtc aaggtgagag aggtgagatt
     1501 gaagatgtta tcggttggcg tttggataat gtagtcgata aaatcaaagg taaaaaaggc
     1561 actaaagttc gtttagaaat tgagcctgaa aaaggtggaa aaactaaaat tattaccctt
     1621 gtgcgtgata aagttcgtat tgaggatagt gctgctaaat taacggtaga aaaagtagat
     1681 ggaaaaaatg taggggtaat taagatccct actttttata tcggtttgac ttcagatgta
     1741 cgtaaattac ttactcaaat agagaaaaaa aatgttgaag gattgatcat tgatttacgt
     1801 gaaaacggtg gtggttcgtt aactgaagtg attgaattaa ctggtttatt tattaaagat
     1861 gggcctgtag tgcaagtaca agacgcattc aatcgtatca aagtacacga agatccagaa
     1921 tcaaaatcag tttatgatgg aaaagtgatg gtgatgatta atcgccatag tgcttcagcc
     1981 tctgaaatct tcgctgcggc aatgcaagat tacaaccgtg caattattgt agggcaacaa
     2041 acctttggta agggaactgt tcaacagagc cgttcattga attttgtata tgatttggat
     2101 caagagcctc ttggttttat ccaatatacg attcaaaaat tctaccgtat caatggtgga
     2161 agtacccagc taaaaggggt tgaggcggat attaaattcc cggaaatcat taatgctgca
     2221 aaaacaggtg aaagttttga agataatgcg cttccttggg ataaaattcc agcagctaat
     2281 tataaagagg ctgggaatgc tcgtaacgcg gttgctgcat taacagcgaa acatcaagag
     2341 cgtattgcta aaaacccaga gtttatagta ttaaacgaga atattgcgat tcgaaaagaa
     2401 cgtgatgagc gtaagttttt atcgttaaat ttagaagaac gcctgaaaga aaataaagca
     2461 gatgaaagca agcgcttaaa agatattaat gctcgttttg cccgtgaagg caaaaaagca
     2521 ttaaaagata ttgatgattt accaaaagac tatgaagcac cggacttttt cttaaaagaa
     2581 gctgaacaga tgatgcttga ttggtcagaa tttgataaaa aatcataaat gtgtttataa
     2641 tgcgcacata acgtaccgct tagctccgct aagcggttta tttttttata aatttgcaaa
     2701 tattaagagg aagagtgggt gaaaaccttt aaattattac ctattatggt ggcgttttct
     2761 ggcatggctt tggctgaaac agccacagtt gctcaggtgg cttctgagcc tgttgtacaa
     2821 gataatattt taccacaatt aagttttgca gctcagcagg ctcgtgctgc agaattggta
     2881 aaacaggccg attatgcgtt agaacaggaa caaattcgtc aagagcaagc aagaaaattt
     2941 gcagaagcgg aagcaagaat taagcaagaa ataggtaata atgccttatt gctgagccaa
     3001 gcaacaacta aggtttattt agacagtgaa tttgcgacaa tgtggaatga taaagccgca
     3061 gaaaaagcat ttttgaaaga atatgcatta tttgcagtaa gtggggtatc ctctaaatca
     3121 gctaaggcat tgcagcaaat cttaaatcaa ccggaaggtt taggtagaga tattttatta
     3181 actgatggct tcttagatta tttgtattac aacaaaaatg tgtttaaaaa tgcaaataat
     3241 tggttatata acttaggcag ttatgtacca aaatcgccct cttcagagca aatcttccaa
     3301 tggactaatg ccgtgaggga aggcgattct gggcagtttg taacagacct tgttccaaga
     3361 aaccatttat atcgtgatac ggcacagaga gtattggcaa tggcaggagg ctcttcagca
     3421 cctaaagcca aaaaaggtaa agctgttacg gaggtagctg gtggcggtaa tggggcttct
     3481 ttctataaat tagcgctcaa tgctcaacgt ttacgtatta ttccaagttt taacaatgga
     3541 atttttgtga atatcccaag ctatcaatta tattatttcc gtgatggtaa tttagctctt
     3601 caatctaaag tgattgttgg gcgagaagat cgccgtacac cggtaatgta tagtaagctg
     3661 agcaatgtgg tagtgaatcc accttggaat gtaccgacta gtattatgac taaagatatt
     3721 attcctaaac tagcgcgtga cccaggttat gcagatcgtg ctagtttcga aattcttgat
     3781 agtagtggca ataaaattaa tccgcgtagc gtaaattggt cacaatattt aaatgctaaa
     3841 agttcaccat accgtattcg ccagaaagca ggtgatgata gcgctttagg acgttataaa
     3901 tttaatatgc caagttcgga tgcaatttat ttgcatgata cgccaaatag aggattattt
     3961 ggtaaaacgg ggcgtgcgtt aagttctggt tgtgtccgtg tagaaaaatc tgatgaattg
     4021 gcaaccattt tattaaaaga agcgggttgg ggatctgata aaaagaatca agtcttaggc
     4081 agtaagaaga cgacctcggc tcagattcgt tcagataacc cggtttatct ctattatgtg
     4141 acggcttggg ttgaaggtgg aaaagtgcaa acccttccgg acatttataa ctttgatgcc
     4201 aaaatcccac aacattctgt gaattgggga aaattaaaga gcattattta atcgtgctat
     4261 ttctgataaa ttccaagaag atatcatctt cttggaactt tttgaaaata tagcttacat
     4321 aaatttacga ttgtaaattt ttactttaag tatggtgtat agaaattcgc tcatttgtga
     4381 gtgattttct ataaatcatt agctaaccta tgaggaaaaa atgaaacaaa ttaatgttca
     4441 acgccgtaag tggctatcac tcggcggact tgttttaggg gctagccttc tgccgggtca
     4501 agtaatggca gcgctttcta ctcctgcccc agctgcgtta cgttttcgta atgtgaatac
     4561 aggcgatact tacactgcta aatttggtgc aggtggatta aataaaaccg atttaagcca
     4621 gttaaactat ttaatgcggg atcgtcatat caatcaagtt aaagcaattg atccaaaatt
     4681 atttgtcaaa ttgaatcaat tacaacgccg tttaggtttc cataatgcgg aaatcctagt
     4741 attaagtggc tatcgctccg cacaaacaaa tgcaagactt cgtcgtagaa gccgtggtgt
     4801 tgccagccat agttaccata ttcttgggca agcagtagat ttccaagtat caggtgtgcc
     4861 gttatataaa gtaaaacaag cggctgagag cttgaataat ggtggcgtag gttattatcc
     4921 tcgtagtaac tttgttcacg tagatactgg cccagttcgc acttggagag gctaacaagc
     4981 ggtcttattt tatgtttaat ttgcaaatta ttcctgttag tccatttcaa caaaattgca
     5041 cggtgatttg ggacgaaaat aagaatgcgg ctattattga tggcggcgat aatgccgaag
     5101 gcattattca atttgttgaa tctcagcagc ttaaggttca gaaattattg attacgcacg
     5161 gtcatttaga tcatattatg gcggtggaaa agttgagaga gcattttcaa gtagaggttt
     5221 tcggctcgca tcttgcagat aaacctttat ttgaacgttt gccggaaatg tgccaacaat
     5281 ttggattacc accagtaaat ggctttttgc cggatcattg gttggaggaa ggtgatcggg
     5341 tcgaagtcgg cgagctgagc tataccgttc gacatttgcc gggtcatgct ccgggtcata
     5401 tcggtttttt tgattttgac aatcgtattg cttttagtgg cgatgtttta ttccaaaata
     5461 gcataggtcg aacagatctc tatttaggca accatagcca gttattggaa acgatcaggg
     5521 aaaaaatgtt tgatttagat gatgatttca tcatcatacc gggacatggt ccacacacaa
     5581 ctatcgggcg ggaaaaacag accaacccgt ttttgaaata aataaagaag cagagcagtt
     5641 ggctctgctt ttttgctatt ttacgcctcg taaatagagg cggtaattat ggctttcttc
     5701 cgtcggttta atgagtgcaa tggtctgttt ttgcttaggt tgcaaccata gatgttgcca
     5761 gccgatacta tctgatatac cgttatggga ttgtgttacc ccatctttat tataccaaaa
     5821 taatttataa gtaagattaa gcggaaattc agttaaattt gtggtgctaa attgcttgct
     5881 attcgtttcc agctctatct tttcagcaat gtcagactca atattgacaa taggctctga
     5941 gccggttggt aaatagctga caggtttgct accacaagcg gtcaaaaaaa tcgaaaaaat
     6001 tgcaaatgca aagtaggaaa tacgcatagt tattttgcca ctaaaggtcc tagtttttgt
     6061 ccgcctaaca agtgcatatg aatatggaac acttcctgcc cgccgttttt attacaattc
     6121 atcactaagc gatagccttc ttcggcaatg ccttcttctt gggctaattt tgccgccacc
     6181 gtaaataaac gccctagggc taattcatct tcattactca cgtgattgac ggttggaata
     6241 aatttattcg gaataatcaa aatatgcgtg ggtgcttgtg gagcaatatc acgaaatgcg
     6301 gtcacaagtt catcttgata gacaatattt gccggaattt ctttattgat gattttggtg
     6361 aaaatcgttt tttggtactc tgtagtcatt gtgttttcct tctaatcgat taaacctaat
     6421 acttttctta caggggcaaa actcttacga tgataaggtg ttgccccaaa ttctgctaat
     6481 ttttcaaaat ggagtttagt cgggtagcct ttgtgctgtg cgaagccgta ttgcggaaat
     6541 tgttggtcta attcgtccat ttcttgatct cgggcgactt tggcaataat cgaagcagca
     6601 ctgatttcag ccactaagct gtctcctttc accaccgctt gtgccggcat tggcagtttt
     6661 ggcggacgat tgccgtcaat tagcacaaaa tccggctgaa tatgcaagcc ggcaaccgca
     6721 cgttgcattg ccaacattgt cgcatttaaa atattcagct catcaatttc tgtcggctcg
     6781 gcacgtccta gcgaccagct cagagccttg gctttaatct cttctgccaa agcttggcgt
     6841 tttttctcgg ataatttttt ggaatcggtt aagccctgaa tcgggttatt cggatctaaa
     6901 atcacggctg cggtcacaac cgctccgact aaaggtcctc gtccgacttc gtcaacaccg
     6961 gcgattaatc gggcgttagg gtaaataaat tcattcatta tacttcttct tttctgaaat
     7021 ggcgttggct tttggtttca gacaggcttt caattaagcg atggtaattt tcaaaccgaa
     7081 ttgcagaaat ttcgccattt tcgacctctt gtcttaaggc acaacccggg tcggttttgt
     7141 gtttgcaatc acggaatttg cacgtgccta aaaccgattg aaattctcga tagcctaagg
     7201 tgatttgctc aggttctaaa tgccataagc caaattctcg aatgcccggc gagtcaatca
     7261 gctgtccgcc ttgcggtaaa tggtataagc gagaggcagt ggtggtgtgc tgacctaacc
     7321 ctgagttatc gctcactgag ccagtgagag cattgacttc aggtaacagt tggttaatta
     7381 ggctggattt ccccacgccg gattgtccga caaaaataga cgtaccttta gcaagatatt
     7441 ggtgtaacgc ctgcatattt tcacccgtat cagccgataa acatagggtt tcatagccaa
     7501 tctcttcata gattttgagc tgctctttaa ctgcttgccg ttcgctttcg tttaataaat
     7561 caattttgtt tagcacgatt aaggcaggaa tattcgccgt ttcgcaaatc actaaataac
     7621 ggtcgataat attcagcgaa agtgtaggta gcacagctga tacaataatg atttgatcga
     7681 tgttcgatgc catcacctta ataccgtcat aataatcggg gcgggtaagt tcatttttac
     7741 gtgggaagac ggcttcaatg accccactaa tcccttgtag ttgctcacta cctttacgcc
     7801 aagaaacctg atcgcccacc actacatttt tcaatgtacg gcggatatta cagcggaaaa
     7861 tttgcccctc tgcggtttca acatcagcgt gtttaacgtg gcgagtaacg acgatgccct
     7921 gttgcatttc tcctaacatt tcatcttgcc attcaatctc ttttttgttg atacgcttat
     7981 gatggttaga ttggattcta cgctgttggt tatgggttaa tttcggttta ctcaaaagaa
     8041 ctctcggtaa ttattgcaaa tgaaaaatag gctttagcat actataaaac ctctttttat
     8101 aatagattaa agtgaaagaa taaaaaagca gaaaggctag aataaaggta gcgaataata
     8161 tagaatgcga tctaggtttt gtgctgtttt tttacataga aaaaaaccgc ccaaagtggg
     8221 cggttataaa ccaatacggt tcaaaatata caggaagtga aacaagtaac tttcgttact
     8281 ctagtctagt ttcctag
//
LOCUS       DANLXB010000113         8263 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLXB010000113 DANLXB010000000
VERSION     DANLXB010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8263
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            21..1013
                     /locus_tag="PXD41_001736"
     CDS             21..1013
                     /locus_tag="PXD41_001736"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL6289254.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1137..1556)
                     /gene="atpC"
                     /locus_tag="PXD41_001737"
     CDS             complement(1137..1556)
                     /gene="atpC"
                     /locus_tag="PXD41_001737"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL6289255.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1584..2957)
                     /gene="atpD"
                     /locus_tag="PXD41_001738"
     CDS             complement(1584..2957)
                     /gene="atpD"
                     /locus_tag="PXD41_001738"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL6289256.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(2978..3844)
                     /gene="atpG"
                     /locus_tag="PXD41_001739"
     CDS             complement(2978..3844)
                     /gene="atpG"
                     /locus_tag="PXD41_001739"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL6289257.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3870..5411)
                     /gene="atpA"
                     /locus_tag="PXD41_001740"
     CDS             complement(3870..5411)
                     /gene="atpA"
                     /locus_tag="PXD41_001740"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL6289258.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5424..5957)
                     /gene="atpH"
                     /locus_tag="PXD41_001741"
     CDS             complement(5424..5957)
                     /gene="atpH"
                     /locus_tag="PXD41_001741"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL6289259.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5971..6441)
                     /gene="atpF"
                     /locus_tag="PXD41_001742"
     CDS             complement(5971..6441)
                     /gene="atpF"
                     /locus_tag="PXD41_001742"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL6289260.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6502..6756)
                     /gene="atpE"
                     /locus_tag="PXD41_001743"
     CDS             complement(6502..6756)
                     /gene="atpE"
                     /locus_tag="PXD41_001743"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL6289261.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6874..7662)
                     /gene="atpB"
                     /locus_tag="PXD41_001744"
     CDS             complement(6874..7662)
                     /gene="atpB"
                     /locus_tag="PXD41_001744"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL6289262.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7685..8068)
                     /locus_tag="PXD41_001745"
     CDS             complement(7685..8068)
                     /locus_tag="PXD41_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL6289263.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2459 a         1853 c         1541 g         2410 t
ORIGIN      
        1 tttaattagg aaagcaaaca atgaaaaaat cttttatttt acagcaacaa gaaatcagtt
       61 ttgttaagaa cacatttact caatatttaa ttgataaatt aggcattatt gaagttcagg
      121 ggcctatttt gagcgaagtc ggcaacggta tgcaagacaa cctttccggt atcgaaaaag
      181 cagtaaaagt aaacgtaaaa tgtattccaa gcgctactta tgaagtggtt cattctcttg
      241 caaaatggaa acgccacacc ttagctcgtt ttggatttaa agaaggagaa gggttatttg
      301 ttcatatgaa agctcttcgc cctgatgaag attctttaga tcgcacacac tcggtatatg
      361 ttgaccaatg ggactgggaa aaagtcattc ctgaaggtcg ccgcaacttc gatttcttaa
      421 aagaaacggt aaacgaaatc tataaagcaa ttcgtttaac cgaattagcg gtggaggctc
      481 gtttcgatat tccatctgta ttgcctaaac aaattacttt cgttcacagc gaagacttag
      541 tgcaacgcta tccgaatatg accagcaaag agcgtgaaaa tgctatctgt aaagagtgcg
      601 gagcggtgtt cttaatcggt atcggcggca aattatcaga cggtaaacct cacgatggac
      661 gagctccgga ctatgatgac tggacaaccg agtccgaaca aggctacaaa ggcttaaacg
      721 gcgatatttt agtttggaac gaagaactcg gcacagcctt tgaactttcc tcaatgggta
      781 ttcgtgtaga tgaaaccgcc ttacgcttac aagttgcttt aactggcgac gaagaccgcc
      841 tcgaaatgga ttggcacaaa gatttattag ccggcagact cccgctttct atcggcggcg
      901 gtatcggtca atctcgctta gtgatgttct tactacgcaa aaaacacatc ggtgaggtgc
      961 aatccagtgt ctggccaaaa gcggtatttg aagagtttga gaatattctt taataaaaca
     1021 aaaaagcgaa ccttagggtt cgcttttgct ttctacaagc ggtcttattt tgcaaaaaat
     1081 ttactgtttt taaccgcttg taaaacaaaa ccccactttc gtggggtttt ttgatattaa
     1141 cgtttattcg ctaatttggt tttagtgagt tcgtaaacac gcagtttcgc aatttctctc
     1201 gctaacttcg cggtcatatc cgcatcgctg gtttttgaaa gtgtttcttc tactttgcgt
     1261 tttgcggcaa gaatacgctg ttcgtctagt tcttcaccac gaattgcggt atcagccaac
     1321 actgttacta cggtcggttg tacttcaagg aaaccacctg aaacgtagat aaactcttct
     1381 ttgccgtcag ctaaagtgaa tttaaccatt cccggtttaa ttgcggttaa taacggtgca
     1441 tgccctgcat acacccctaa ttcaccatct gtccctgaaa cacgcacgct ggtaactgtg
     1501 ccttcaaaga ttttacgttc tgcactcact accgtgagtt caaattgaga tgccatgttg
     1561 ttctccttta gtttagaaca aaattacatc tgttttgctc tttcaaccac ttcgtcaatt
     1621 gaacccgcca tatagaacgc ttgttccgga atatggtcgt attcgccttc taaaatgcct
     1681 ttaaagccac gaattgtttc ttttaacggt acgaatttgc ccggtacgcc gttgaatact
     1741 tccgcaacgt ggaatggttg tgaaaggaaa cgttcgattt tacgcgcacg agcaacaagg
     1801 cgtttgtcgt cttccgataa ttcatccata cccaaaattg caatgatgtc ttttaactct
     1861 ttataacgtt gtaatgtacc ttgtacacca cgagcaacgt tatagtgttc ctcaccaacc
     1921 acgagtggat ctaactgacg agaggttgag tcaagagggt caaccgccgg gtaaataccg
     1981 agtgaagcga tattacggct taataccacc gttgagtcta agtgggcaaa ggtagttgcc
     2041 ggagacgggt cagttaagtc atccgccgga acatataccg cttgcacaga ggtaatagag
     2101 ccggttttgg ttgaggtaat acgctcctgt aatacgccca tctcttctgc aagagtcggc
     2161 tgataaccta ccgcagacgg catacgacct aataacgcag atacttcggt accagctaaa
     2221 gtataacggt agatgttatc cacgaagaat aatacgtcac gaccttcatc acggaatttt
     2281 tctgccatgg ttaagccggt taatgccaca cgcagacggt tgcccggtgg ttcgttcatt
     2341 tgaccgtaaa ccagcgatac tttgtctaat acgttagagt ctttcatttc gtggtagaag
     2401 tcattaccct cacgagtacg ctcacctaca ccggcgaata ccgagtaacc gctatgttcg
     2461 atagcgatgt tacggattaa ctccatcata tttacggttt tacctacacc cgcaccaccg
     2521 aataagccaa ctttaccacc cttagcaaat ggagcaacta agtcgataac tttgataccg
     2581 gtctctaaaa gctcggtgct gttcgcttgt tcttcgtagc ttggtgctgc acggtggatt
     2641 gtccaacgtt cttcttcacc gattgggcct gcttcatcaa ttggctcacc taatacgttc
     2701 ataatacgac cgagtgtttt tgtaccaacc ggtacttcaa tcgctttatt cgtattttca
     2761 acttttaagc cacgttttaa accatcagat gaaccaagtg cgatacaacg gaccacaccg
     2821 ccacctaatt gttgttgaac ttcaagggtt aatcctgatt caacttttaa tgcatcataa
     2881 acttttggta ctgcatcttg cggaaactca acatcgatta ccgcaccgat gatctgtaca
     2941 atttttcccg ttgccattac cgttcctcta ttcattgtta aattgctgcg gcacccgcga
     3001 caatttcatt taattcattc gtaatacttg cttgacgagc tttgttatac actaactgta
     3061 actcattaat cagattacct gcgttatcgg ttgctgcttt cattgccacc attcgagcag
     3121 cctgttcaga cgcaagatta tctaccactg cctgataaac ttgagattct aaataacgaa
     3181 ccagtaagct gtctaataac gcttgtggat ttggttcata gagataatcc caagaaccag
     3241 tttgctctaa tgagtcattt tccagtgcag gcaaaggaag caactgttgt actgtcggtt
     3301 tttgtgacat cgtgtttata aaacggttat ataccacata cacttcatca atttcgcctt
     3361 cacggtaggc atttaccata ccattaacaa taccgactaa atcttccatt gccggtgtat
     3421 cacccaatcc attgatatga cctttaatct ctagccccat tgggttaaaa aaggagatcc
     3481 ctttatttcc caccacagca agtcgagact taacaccttg gtcatctttt tctttcaatt
     3541 catgtaaaac ggttttaaat aaattgatat ttaagccacc acataaaccg cgatcggttg
     3601 aaactactaa atagccaact ttttttaccg gacgtggggt caaaaatggg tgtttatact
     3661 caatgttacc tttggcaata tggctaattg ccttgcgaat actttcagca taagggcgag
     3721 aagccgccat acgctcttgg gttttacgca tttttgatgc ggcaaccatt tccatcgctt
     3781 tggtaatttt ttgtgtatta cgaacacttg caattttggt tcttatctct ttagcacctg
     3841 ccatattatt tctccgctaa aaagttagat taccaagcac tgttcttttt gaaaccagat
     3901 aaaatctcgt tcaatttatc tttaatttca tcgttgaaat tgccggattt tgacagttct
     3961 tgcataaact cgccgtagtt actttgagca taagctaata agtttgcttc aaatgagcca
     4021 acacgctcaa ccggaatatc atctaagtaa ccgtattcag ctgctgctaa tgataaacct
     4081 aattgtgcaa cagacatcgg ctcgaattgt ttttgtttca acaattcagt tactttttga
     4141 ccgtgtgaaa gctgtttacg tgttgcttca tcaagatctg atgcgaactg ggcaaatgcc
     4201 gctaattcac ggtattgagc aagtgcggta cggataccac cggcaagctt cttaaccagt
     4261 ttagtttgtg cagaaccacc tacacgggaa accgagatac ccgggtttac cgcagggcga
     4321 ataccggcat tgaataagcc tgattctaag aaaatctgac catcggtaat tgaaattacg
     4381 ttagtcggta cgaaggctga aacgtcacct gcttgggttt cgatgatcgg taatgcggtt
     4441 aaagaaccgg tttgaccttt cacagcaccg ttagtgaaac gttctacata gtctgcattt
     4501 acacgagacg cacgctctaa taagcgagag tgtagataga acacatcacc cgggaatgct
     4561 tcacgacccg gtggacggcg taataacaat gaaatttgac ggtaagcaac tgcttgctta
     4621 gacaaatcat cgtaaacgat caacgcatct tcaccacggt cacggaagta ttcacccatt
     4681 gcacaacctg cataaggtgc aagatattgt aatgcagcag attcagacgc agaagccact
     4741 acaacgatag tgttcgctaa tgcaccgtgt tcttctaatt tacgcaccac gttggcgata
     4801 gttgatgcct tttgaccgat tgcaacgtag atacatttaa tgcctgaatc acgttggttg
     4861 atgatcgcat caatcgctaa tgcggtttta ccggtttgac ggtcacctat aatcaattca
     4921 cgctgaccac gaccgattgg taccattgag tccaccgctt tgtaaccggt ttgaaccggt
     4981 tgatcaaccg attgacggtc gataacgccc ggtgcgatca cttcgattgg tgagaaaccg
     5041 tcattttgga tttcgccttt accatcgatt ggctgaccta aggtatttac aacacgacct
     5101 aataagccac gaccaaccgg cacttctaaa atacgaccgg tacattgtac ttgcatacct
     5161 tctgctaaat cggcataagg tcccattaca actgcaccaa cagaatctct ttctaagttt
     5221 aatgcaatcg cataacgatt gcccggtaat gcaatcattt caccttgcat tacatcagat
     5281 aagccgtgga tacgaataac cccgtcactt accgaaacga ttgtccctgt gctttgagct
     5341 tcactcacca cattaaactg ggcaatacgt tttttaatca attcactaat ttcagttgaa
     5401 tttagttgca ttttttattc ctcttacaag ctcaactctt gactcaagcg gtttagctgt
     5461 ccacgactac taccatcaat cactacatca tcataacgaa tgatcacacc cgcaattaat
     5521 gaactatcta ttgatgaagt aatacgtact ttcgttccga gtcgcttttc catcgcattg
     5581 gcaatttttg cttcttgtgc atctgttaat ttatctgcag aaacaacctc aacatcttta
     5641 attgattcct gttctgctct taattctaaa aatgcattca ataccgcagg taatactgct
     5701 aaacgcttgt tatcagccat tacgcgaatg aaattttgcc catattgatc taattgttcg
     5761 ccacaaatct tgataaacgt ctcagaaatc tgaccgcttg caagtgatga gttaagaaaa
     5821 ctagctactt gctcatcgtt agcgacggcg gcagaaaaag ttaacatctg ctgccattgt
     5881 tccaattgac cttgttctaa agcaaaatcg aaagccgctt tagcataggg gcgagctact
     5941 gtgcttaatt ctgacatctg cccctcctag ttatagttcc gcaactagct tatcaataat
     6001 atcgttgttc gcagcggcat ccaccgaacg acccacgatt ttttctgcac cagcaatagc
     6061 caatgcagcc actttttgac gaagctcttc ttgaacgcgt ttacgttcgc tttcaacttc
     6121 cgcgtaaccc tgttcaataa tacgttgacg ttccacttca gcttctgctt gtacagattc
     6181 taaaatttca ttacgacgtt ttgttgctaa atcaatgata ttttgtgctt cttctttcgc
     6241 tctaaggatt tcttgatccg cagccgcttt agaatcagct tgttcttgtt tcgctttttc
     6301 ggcagaagcc aatgcgctag caatatttgc ctgacgctct tctatcactc gaattagcgg
     6361 tggccataca aacttcatac agaacgcaac aaaaagtgcg aacgcaatca gttgaccaat
     6421 tagtgttgca tttaaattca caacgccctc ctaaaagccg gtaaagttat tcaactgaat
     6481 aacggttaat caaatcccga cttatttcaa taaatcaatg aacgggtttg cgaagatgaa
     6541 tagtaatgaa atacctacag cgatcattgc gatagcatct aaaagaccag caacgataaa
     6601 cattttagtt tgtaagcttg atgctaattc cggctgacgt gcagatgact ctaagaattt
     6661 gccacctaag atagcaaagc cgatagcagt accaagagca gcgaaagcta ataaaattga
     6721 agcaccaata attgttgctg tgattactga ttccataatg ttctccatta gattgaggaa
     6781 ttagcccgaa ggctgggttg ttgataaaaa tacatatcaa gcggtcaata ttttgcaaaa
     6841 atttgcgaaa aacctaccgc ttgtaaggct agtttaatga tccgctttgt tataagcgat
     6901 actcaaataa acaatcgtta gcatcataaa aataaaggct tgaagcgtaa taactaaaat
     6961 atggaaaatc gcccaaacca agtgtaatgg aatccccaac gcctgtagag cgaagttgtc
     7021 tgccatatac attactgcaa taaggataaa gattaactca cctgcataca tattaccgaa
     7081 taaacggaac gccaatgaaa tcggttttgc caaaagcgtt accgtttcaa gaataaagtt
     7141 taccggaatg aatgcccagt ggttaaacgg gtgtaacgtg tattctttca ctaaaccgcc
     7201 aaaacctttc gatttcaccg tgtaaaataa aattaacgca aatacacaaa tagacatacc
     7261 cagtgttgca ctaatatctg ccgttggtac tgcacgcaaa tagtgaatac caaacagatt
     7321 ggctaactgt ggtaagaaat cgaccgggat aaggtcgatc gcattcataa taaacaccca
     7381 acagaaaatc gttaatgcta atggtgcaat tacattgcga ggtccgtgga agttatcctt
     7441 cactaaaccg tttacccact caataacaat ctcaacaaaa cattgcaatt ttcccggaac
     7501 gcccgttgtt gcattttttg ctacacgcga gaacacccat aaaaaaatcg cacctgccac
     7561 taaagagaag aacagtgtat ctaaatgcac tgcccaaaag ccttcacctg tcgataaaaa
     7621 actcaagtga tggctaatat attctgctgt cgttccagcc ataacatatc cttttaaatt
     7681 aaaattagtg gtgatgtttg cttaatacaa acgggatcat attatttaaa aataatgcga
     7741 taaaataacc cacgaaaaac aacacaacat ctagagcagg gataagttta aaacagccga
     7801 tcaccaaaat aatagtaacc aaccatttca ttccttcacc acgatagaaa gcggtcattt
     7861 ttgactgatt ttttgcagat ttcttaaaga aaacccaata tacaaacaca agatgaggca
     7921 aaaaactcgc taaagcaccg cctagaaagg aaaaattaaa attcattttc cataaagaca
     7981 ctccaagtgc aaaaacgcac aagagaaaaa attcaacctt taatgcttgt ttatattgtg
     8041 attttgctct attgattaca gctgacacat tttatccttt ttgaataagt aaaccacaca
     8101 atcaggctaa taattagcca ctgttgaatc aaagaaaatc cgtgctaaat tatactttac
     8161 aaatgaattg ttgcaaccga aaagcgacac aaaaacttgt tattcttcac atttttgaaa
     8221 aaaaatttta tttacgttgc atttttttga gtaaaaccat caa
//
LOCUS       DANLXB010000114         8227 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLXB010000114 DANLXB010000000
VERSION     DANLXB010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8227
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            166..597
                     /locus_tag="PXD41_001746"
     CDS             166..597
                     /locus_tag="PXD41_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6289264.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            615..1607
                     /locus_tag="PXD41_001747"
     CDS             615..1607
                     /locus_tag="PXD41_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289265.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            1604..2593
                     /gene="oppF"
                     /locus_tag="PXD41_001748"
     CDS             1604..2593
                     /gene="oppF"
                     /locus_tag="PXD41_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL6289266.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(2697..3455)
                     /locus_tag="PXD41_001749"
                     /pseudo
     CDS             complement(2697..3455)
                     /locus_tag="PXD41_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXD41_001750"
     CDS             complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXD41_001750"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL6289267.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXD41_001751"
     CDS             complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXD41_001751"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL6289268.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(5003..5650)
                     /locus_tag="PXD41_001752"
     CDS             complement(5003..5650)
                     /locus_tag="PXD41_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL6289269.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXD41_001753"
     CDS             complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXD41_001753"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL6289270.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(6807..8108)
                     /locus_tag="PXD41_001754"
     CDS             complement(6807..8108)
                     /locus_tag="PXD41_001754"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL6289271.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
BASE COUNT         2352 a         1856 c         1704 g         2315 t
ORIGIN      
        1 agcattctga aagggaacgc cacttttgtg ggaatgccac ctaaaccctc taccatctca
       61 gtgaagcatc attgagattt cattttactt ccacctcgcg gggaacattt ttcccgtgtt
      121 gggcaaggat gtttctccgc ttttttacat ttggagaaac aaactatgac aactcaaact
      181 tctactcaaa aaaattactt caaccttcat acaacaggca ttggctatct aaacgatatt
      241 cgtttggtag agcctaaaaa aggaaatcct ttttatgcct gccgtatagc agctctggtt
      301 ggcgaatctg actctcctga gtacagatat tttgatatga atgtagtcgg taaagagact
      361 gaaacactta tcaaaagatg ccaaaaagca gttagtgaag agaaaaaagt gcttgtgtca
      421 tttgtaatgg ctgatttgtg gttcgataca tttacttact caacagatag taaattccac
      481 aaaaaaggcg ataccggtgt atctgtaaaa ggtcgcttaa tccgcatcaa aatgattaaa
      541 attgatgggg aaatagccta ccaagaaaag ccaaaatcag atgagcaatc tgagtaattt
      601 tacctaagcc cgacatttta tgttgggctt tattactcga tgtacaagat ttgcgcgtaa
      661 cttttaagac cccagatggc gatgttactg ccgtcaatga tctgactttt tctttaaatg
      721 ccggtgaaac cctcggcatt gtcggcgaat ctggctcagg aaaatcgcaa accgcttttg
      781 ctctaatggg gctattagca gataacgggc gaatttcagg atcagcaaaa tttaatggac
      841 aagaaattct caacttgcct gaaacacaac ttaaccgctt gcgtgctgaa caaattgcga
      901 tgatcttcca agatccaatg acctcgctga acccttatat gaaaatcggc gaacagctaa
      961 tggaagtact gatgttgcat aaaggcatgg atcataaaac tgcgtttgaa gaatcggtac
     1021 ggatgttaga tgcggtgaaa atgccggagt cacgtaaacg tatgaatatg tatccgcatg
     1081 aattttccgg cggtatgcgt cagcgtgtga tgattgcgat ggcattactt tgccgtccga
     1141 aactcctcat tgcggatgaa cccacaactg cgctcgatgt gacggtgcaa gctcaaatca
     1201 tgaccttatt aaacgaatta aaaagcgagt ttaataccgc cattatcatg attactcacg
     1261 atctcggtgt ggtcgcagga atttgcgata atgtgttggt gatgtatgta ggcagaacca
     1321 tggaatacgg caccgctgag caaattttct ataccccaag ccacccttat tctatcggct
     1381 taattggtgc agtgcctcgc gttgacggac aggaagaaga actcattact attccgggta
     1441 atccacctaa cttattacgc ttaccgagtg gctgtccttt ccaaccacgt tgcgttcatg
     1501 caactaaaca gtgcctcaaa gcaccggcgt taaccttgtt aaatgatcaa cgtttacgcg
     1561 cttgttttgt ccctgccgag caattaatcc gaggtaacgc atcatgaaca cagagaaaaa
     1621 agtgatccta gaagtgaagg atttaagcgt tcatttcaac atcaaagata cgaaatcttt
     1681 attctttgct aaacaccaaa ctttaaaggc cgtcaatcat gtctcttttc agttatacga
     1741 aggcgaaacc ttaggtgtgg tcggtgaatc gggctgtgga aaatcaactc tcgcacgcgc
     1801 gattattggc ttagtggaaa gctctggcgg taatatttta tggctaggta aggagttaac
     1861 tcaacaaagt gcgaaagaat ggaaaacgat ccgtagcgat attcaaatga ttttccaaga
     1921 tcctttagcc tccctgaatc cacggatgac cattggcagt atcattgccg aaccattaaa
     1981 aatttaccaa ccccatttaa ccgcggaaga agtgaaagaa aaagtacgcg cgatgatgat
     2041 gaaagtgggc ttattaccta acttaatcaa tcgctatcca catgaatttt cgggtggaca
     2101 atgtcagcgt atcgggattg cgcgcgcctt gattgtggaa ccaaaactca ttatttgcga
     2161 tgagccagtg tccgccttag atgtttcaat ccaagcacaa gtagtgaatt tattgaaatc
     2221 tttacaacgc gaaatggggc tatcattgat tttcattgca cacgaccttg ctgtggtgaa
     2281 acacatttcc gatcgtgttt tggtcatgta tcttggtaac gcggtggaat taggtgacta
     2341 tgaacaagtc tatcacgata ctaagcatcc ttataccaaa gctttgatgt ctgcggtacc
     2401 gattcctgat ccgcaattag aacgcaataa acaaattcaa ttgcttgaag gcgatctccc
     2461 ttccccgatt aatccgccgt cgggctgtgt gttccgcacc cgttgcccac tggcagatca
     2521 acactgtatt gcagacaaac cgctcctcaa aggacgagat aatcacgttg ttgcttgttt
     2581 taaagccgag taatacacac aaccgcacaa aaaagtgcgg ttgttttttt gcgaatattc
     2641 acagtcagac tttcgtgata ctttcgctct gagataagga ttacgataca gagaagttat
     2701 tcaacaatca cacgtgcatt gatcggttgc actggacgat tattgtgtcc tttcatcaag
     2761 gtcgcaaacg cctcaacttg agattggcta atgttgtcat agtgttttaa cactaaccaa
     2821 tttacacctt cagaacaagg tggtgtagtt aatgacccgc tgaaacgata gtaatcgcgt
     2881 tttttcggaa ttaatgttgc tgggtcaaaa gcggtactaa gcgtatattt ctcccctgct
     2941 ttttgcggga agttttgcca aattggggct aaccattggt tttcacttga taatacatag
     3001 agcacgccaa gcacagcaag attcccttca ttgtctgcgt gtacaaaatg tgcttccatc
     3061 gggaaggatt tacctcaaat taagttttca ctcggcacat ggaaatggaa ttgtttaagg
     3121 gtaaaagtct ttccattaag ctgcatgcga ttacttgcct ctttgaaatc cacttgaata
     3181 gtatgcccat tattgacaat ctccacattg gaaggtcgat aatccagctt aatcggcgct
     3241 aacttaccat caatcgtatg cttgatatct attggtgttt ggtttttacc ttcgccacaa
     3301 atacggaatt tgggtgaaag ttcagcccaa tgttctggcg attcgtgtcc ggtgtatccc
     3361 caatgcgtgt gcgtttcttc tttcttaagg gggcttgtac acgctgtcaa tgctaatgca
     3421 cctaacgtaa gcacaaaaag gtttgatttt ttcatagcct agctcctgat taaaagagat
     3481 gaattgatga gacaacctaa actcaatgat gccttaatcc gagacgcttt catcttaggc
     3541 aaaacaacac tccatttcaa gtataacttg ctcaagaata tatcttagac cgaaatcaaa
     3601 tccattattt caaataaggt attaggcgag tatttctcta aataacgacg taaaaaatgt
     3661 tgtgtttctt ggctaatgac ttgatctgtt tccggataca agttgtatat cacagcatgc
     3721 acacttactc ttttggagtt gagtacttgt aaactcaata aggtatgatt aatactacct
     3781 agcttgccag aggtaactaa aatcacgggg tattgatgct gacaaagata atcaagggtg
     3841 gtttcttcct cattataagg tacacacaag ccgcccgccc cttccaataa tacataatca
     3901 tatttttcac acaaaagtgc ggtgcaggtt tcaatttttt tacgttcgat cgtgcgcggt
     3961 tctaatttcg cggctaaatg cggtgagcaa ggataatcaa acacgtaagg acaagtgata
     4021 ccttgcttat cttcttctgt aagctcaata ccttgtattt ttcggtgtat gagtaaatct
     4081 tcggcaattc ctcggcagcc tgtttggatc atcttttgcg tgatgacact tgcgccttgt
     4141 tgcatcagtt tcttggcgta ccaacctgtg gcgatggttt tgccaatatc ggtgtcgatg
     4201 ccagtgataa aaaaaacctt tgccatactt tttccttcta agattaagtt aaacgcgcca
     4261 gcacatacat cggcgtgtaa gtgagttcta ctttgtgttg tgcgttacgg taatgttgtt
     4321 gatattgttg gcaaaaggcg tgcaattgcc cttttgtcca cctttgctgc tgtgtggcag
     4381 taacgcctgt ttgtttcaaa tgttttaaca ccgctaaggg atcatcaaag tgcaacacaa
     4441 tctcctcgtg ttcgagggct aaaatctcaa attcaggcac tagccacttt tgccagtcct
     4501 caagacgtgg ataagttaac cccacaccgg tgaggtgttt gatctgtgtt aaattctcgg
     4561 gcgtgaaagt actgaataac aaaaatccgt gcttttttaa gcgcacttta caacgcgcaa
     4621 taaaacccgc tttatcttca aaccattgca ccacggaagc actggcaatc aaatcatact
     4681 gctgcggaaa gggaagttgt tccgcatcgc cacaatggaa gtgaaaaggt tggggcaaca
     4741 ctgattgcag atgctctcgc atatcgcaaa ggtcattcag ctcccagtgt tcaacctgca
     4801 actgtgacat taattgcttc gttaatccac cagtaccaca tccaatctct aatgcacgtt
     4861 ggaatgcttg tctgtcgata tacgacaata aactaagcaa acgttggtga atctgctgtt
     4921 gtgctctcgc ttgctgatca tagttcgata cagcggcaga aaaacgctgt ttaatgcgtc
     4981 ctttatcaat acgatccatg tgctacaacc aacaagtttc ccaatgggtg aagtgaggaa
     5041 acaacaaatg ctcccctgcg atttctgtta ttgcacaacg atcctgccaa taagcccgct
     5101 gattttgtgc agggaaaatt ttatcttttg agccgacaat cgccttgctc cacgagatta
     5161 aatctgtacg gtgatcttgt tgtaaaaagg tataaagtgc ggtcagttca gcatgaattt
     5221 cctgtaatgt gggacgcatg gaatagtgct gataatctct taacagcgtt tttgaaccac
     5281 aaatacgacg ttcaaattta gtccgattat cttcatttaa accagataac gtgccagcaa
     5341 aaatggcttc gggaatacca tattggtcat cacaaggtaa gcccgtgcca ttgatcgccg
     5401 tagcagatag cagtggataa ccttgcatca cacgctccgc tacccacacg cccattgacc
     5461 atgccaccac gcgaatatgt tgataagcgg aaaaatcaac atcgcaatgc agatctcgat
     5521 aatcatagca aaggcataaa tcataatttt ccggcagaat caggtgctcg accacgctcg
     5581 gcggtgtgcc ccaccctgca aaatagacga tcagattgtc gccttgctgt gaaatatgtt
     5641 gtgttttcat tcagcaagct cccgtaaaca agcaataaat tgttccactt ccgccacttg
     5701 catatctgca gtcagtgaaa aacgaatacg agaggttcct tttgggactg tcggcgggcg
     5761 aatcggtaag caataatagc cttgttgttg caaacgttgc gccgttctta ctgtcagttc
     5821 gttatcgccc aaaatataag gtacgataca actttcactt ggcatcggga cttgaaaaat
     5881 gtcaacaatc gcttggcgta aatgttgact aagctgagca agatgtgcgc gttcggcttg
     5941 caaatgtggt aattgttgaa agacaaaatg cgtccatgcc acattaaacg gcggaagtgc
     6001 cgtggaaaaa atcaatgggc gcattttatt aaccaaataa tctcggatca cttgatcgca
     6061 aatcacataa gcccccatag agcccaacgc cttgccaaac gtaccgacta aaatatcaat
     6121 ttggttgata cagccttgtt gttctgctaa ccctagcccc ttctccccca atacgcctat
     6181 cgcatgggct tcatctacat ataacatcac ttgcggatag cgctgtttta atgcgaccaa
     6241 ctgggtgagg tctgcacagt caccatccat actaaacacg gattccgtga ccacgataat
     6301 ccgctcaaaa gtgcgatcat ttttttgcaa aatttgttca aggtggacgt aatcatgatg
     6361 acgaaaacgc acaaactcac attgtgccaa gcgaatgcca tcaatcatac tggcatgtac
     6421 cagtttatcc gccacaatca gcgttttttt gtccgctaaa gcaggcaaaa tcccaatatt
     6481 agcatgataa ccgctattaa atagcaaggc agtttctcgt ccaaatgcct gcgccattaa
     6541 gctttctagc tcatcataaa tcggaaaaga gcctgttaat aaacgggagg aagaagaagt
     6601 caatgcaggg agttgatctt ggtattgcgt gaaaaatgcc tgacgcaagg cttcgttatt
     6661 ggctaaacct aaataatcat tggaggacat attcagcatc gtattgtcct cacgttgaat
     6721 aaaacgccct cggtgaatta gttggggcag ttggcgaaat tgattctgcg cctttaaatc
     6781 agctaactgc tgctgataat acctgatcat agagattcct tatgtgcata ttcttcttga
     6841 agggtgcgaa ttgtgccatg aattaattga gacaattgat ccgatgagat gatatacggt
     6901 ggcatcaaat acactaattt gccaaatgga cgcacccaaa cgccattttg cacaaagcgt
     6961 ggtggtaaac ttgccatatt gacaggcgcc ttcatttcaa tcaccccaat cgctccaagt
     7021 actctcattt cagcgacaca atctaaggct tccgcttggc gcaattcttg acgtaattgc
     7081 tgttcaatct gttgaatacg ttgttgccaa gggcttgcca ataacaattt gatactttct
     7141 gctgctaccg cacacgccag tggatttgcc ataaacgtcg gaccgtgcat aaaacatttt
     7201 gcctcgccag aacaaatcac gtctgctacc gcttggttgg taatggtagc ggatagagtt
     7261 aaataccccc ccgttaaagc tttaccgata cacatcacat ccggcacgac attggcatgt
     7321 tcacaagcaa ataatttgcc tgtacgccca aatcctgtgg caatttcatc aaaaatcagc
     7381 aaaatgccgt acggttcgca taaggctttt gcttgcacca aatactcagg ggaataaaaa
     7441 tacataccac ccgccccttg cactaccggt tctaaaatta aacccgcaat ctcatcacca
     7501 tgttgtgcca ataaatcctg taacggttgc atcgcttcgg gttgccaagc ttgcccaaat
     7561 tttaccgggg gttgcggtaa aaaatattgc acgggtagcc ctttggcaaa caagctgtgc
     7621 atgccggtca cgggatcaca cacggacatc gcatgccaag tatcaccatg atagcccgaa
     7681 cgaatcgtag caaatttata gcgctgtgtt tcgcctttag catgttgata ttgcactgcc
     7741 attttcatcg ccacttccac ggcgaccgaa ccactatcgg caaagaaaat tttatccaaa
     7801 ctttccggca agatgttgac cagttgctgc gccagttcta ccgctggttg gtgcgttaat
     7861 ccaccaaaca tcacatgact catttgactc agttgttgcg tggcagcgtg gtttaaacgg
     7921 gggtgattat agccatgaat cgctgaccac cacgatgaca tgccatcaat caactgctga
     7981 ccgtttttta actggatata cacaccttcg gcacgttcta ctgcaaataa gggaaaatcc
     8041 gcatttaacg ccgcataagg gtgccaaata tgttgtcgat cacattctaa aagttgctgc
     8101 tcattcatcg tttcacctcg gttgtgaatc gccctttcaa ctggcgtaaa ttcacgcaaa
     8161 tacttacata aacggaataa cttgttataa tcgccaagca tttggctttt caagcccatt
     8221 attctaa
//
LOCUS       DANLXB010000115         8213 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLXB010000115 DANLXB010000000
VERSION     DANLXB010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8213
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(345..1586)
                     /locus_tag="PXD41_001755"
     CDS             complement(345..1586)
                     /locus_tag="PXD41_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL6289272.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
     gene            complement(1586..1897)
                     /locus_tag="PXD41_001756"
     CDS             complement(1586..1897)
                     /locus_tag="PXD41_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289273.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            complement(2252..2845)
                     /locus_tag="PXD41_001757"
     CDS             complement(2252..2845)
                     /locus_tag="PXD41_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289274.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
     gene            complement(2969..3832)
                     /locus_tag="PXD41_001758"
     CDS             complement(2969..3832)
                     /locus_tag="PXD41_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL6289275.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            4004..4753
                     /locus_tag="PXD41_001759"
     CDS             4004..4753
                     /locus_tag="PXD41_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6289276.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            complement(4755..5240)
                     /locus_tag="PXD41_001760"
     CDS             complement(4755..5240)
                     /locus_tag="PXD41_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL6289277.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(5304..5849)
                     /gene="smrB"
                     /locus_tag="PXD41_001761"
     CDS             complement(5304..5849)
                     /gene="smrB"
                     /locus_tag="PXD41_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL6289278.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            5942..6886
                     /gene="prmB"
                     /locus_tag="PXD41_001762"
     CDS             5942..6886
                     /gene="prmB"
                     /locus_tag="PXD41_001762"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6289279.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            complement(6970..7863)
                     /gene="murQ"
                     /locus_tag="PXD41_001763"
     CDS             complement(6970..7863)
                     /gene="murQ"
                     /locus_tag="PXD41_001763"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL6289280.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(7876..>8213)
                     /locus_tag="PXD41_001764"
     CDS             complement(7876..>8213)
                     /locus_tag="PXD41_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6289281.1"
                     /translation="LDLNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIK
                     LIQKRVLEFDKVDLLSTDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQ
                     IKCIVIKEV"
BASE COUNT         2355 a         1766 c         1553 g         2539 t
ORIGIN      
        1 taaatgttag tttttctgat gtctgccatc tgctaggcat tatatatgcc tagattagtt
       61 tcctacattt gcgtttttaa ggctacgctt ccttgcggat atggttgaga aaaaagtcaa
      121 gtgttactaa tggttttata agatgttggt ttgttctggt gtctgccacc gctaggtctt
      181 tataccctag attagtatca ggtctttctg gtgcctgcca ccgctaggcc tttacatcct
      241 agattaatat cagattgaca atgagccaac aactcattgc gttattaagg taacgctact
      301 tttttagaac atagactacg atgattggtt ccacaagtca attactatac attaaatgca
      361 aatttcatct gctcttgctc ttggcgtgga ataccaattt cttttgcgac attttgccaa
      421 ttattaattt ctttcagtac ttcatcataa atctgtacgg cttgttgctt agataattga
      481 aaaaagtcag caacatcaaa ggcgagctga taatccaatc ggttatcgct gtctgttatg
      541 tttaaatgta atccttgaga tagtggtact gggtttaaat cgtatgcggg agataatatc
      601 cacccctctt gagcgtagat aaatccgtgg ttacgcaaat gatcatcagt attcgaaata
      661 gcaatattga atacaattct tctccatagt tgagccaagt caattcgagt atttgaacca
      721 ctttctgtta aaaattgagc aatctcaagg tagcttgcct catagtctcc gtcataataa
      781 cccagctggg ttaatgctga cgtaaaatgg cgacgttttc cacaatgtcg atcaaatctt
      841 tgtgtcaaaa aagtatggtg ttcttggtta aagcgttcaa ttctacaagt agccatttca
      901 attttggctt gaatagccag tcgataagct aaatattccc aaagagcaat atcataatca
      961 tcgtaccgac ttggaaattt ggcaatccat agttgattta gttcatctat taccgaagct
     1021 tttggtctag ctccgcctag tgacgaccct ggtgatatca acatatgaag ccattttaaa
     1081 taatccggat cgtccacatt atcactgctt tcaagttgta ttgctgcaaa ttctaattct
     1141 cttaaggaag acagtggtgg tgctgcaaga cgagtattat tgtccaaaaa tggaccattc
     1201 aattcagttt taaaacgtaa agcccccatt ctattcatat cgtgtacgcc taaaaggtaa
     1261 tcactttcta ttagtaactt aggtttacga ttctcttgac tagctagagc tgcctcccga
     1321 cgtttcatta acaatctacc ccatctatca gggcaagaat ctaaaaagat atgaaaattt
     1381 tgtgtatctg tactgtattg ctctccaggg taaaggtata agttaggatc aatctgctgt
     1441 acatagggtg aacttaacca ctcgttatcg tagctaaaac ggaaattttc tttgcctctc
     1501 actacatcag aagaaagcac cccaactaat tcaggctgtg aaaaagtttc ccaatctgca
     1561 aacacataaa ttcgtttatt catcattatt tccttaataa ttcaatatct tgcaatttac
     1621 gtcctaactc atcatccttt ccaacatcag tgaaatcttg ttctagaccg agaacaccta
     1681 aaaccattag gtagtatcca atcgcaacag ttggatcacc attcataatt tttctcactg
     1741 ttacacggct aagcccagtt ctttgagcca ataatgtttg agtaaacatt ctcctttttg
     1801 aggctagcct aatattttct ccaagttgaa gcaaggcatt ttggtactta ggaaacagag
     1861 ttggtgattt tgttttactg agcattatta ttaccatttt tatgtttttt ggaaattata
     1921 atgtccattt atagcaattg caagagcagt tatgtaaaca gtaaaatagg tagagagggt
     1981 ttttcggaaa aaaatatctg gtgaagtttt gactaaattt gaattaaaag aaaaaataga
     2041 ttttttcaaa taaaatcaat ctaaaaaatg attttcaggc tttacaaact tgaaagaatg
     2101 tgtaagatct agaacgtctg aaattcggac ggaaaatccc aatggatgta ttggctggat
     2161 acatcgtagt aactgtgtat ttgcgaatat gatttgaaca atcctacaca aacgattcaa
     2221 aattcaaatg cttacagcaa actatgtaaa actaaatttt acatagtgag tggtgccagt
     2281 ggtcggactc gaaccgacac gctttatggg cggcggattt tgaatcaata atggcagaag
     2341 gtgctttgcc ggtgtatttt ccctcttttt gtagcgtgcg tcctcttgct cccacacttg
     2401 ccaccacata gcctttagat aacgccacca aaatcgtacc tggtgaaccg tcacgtcttt
     2461 ttttatcata acttgccgct tttgccggca tatagccccc cactgaattt ggcaagaaga
     2521 tcggggcggt atccgcttgg tagccattga tttcgccatt attgtagtaa gcttccggca
     2581 catacagatt aattgtttgg taatctggct caatcggatt gttcacatac acaatccgct
     2641 caaaggcacg gaattggatt ttctcgccat ttaattccgt ttcaattaaa cgatagtttt
     2701 gatcattaaa gactaaatca tacccagatt cggttttatt gaaaaagggc tgtggctctt
     2761 cagctgtttt ttccggcggt acagcaaaac tctgactata tagcattgaa gaggcaatga
     2821 gtgtagataa ggcttttagc ttcatttttt gtcctttatg aaatatgaat cggtacaaca
     2881 agcggtcgaa tttattgaat attttacact atattactca aaaattaagg gcgaacatta
     2941 tgttcgccct taattttgga aagtatattt accgccaata aaacaagcaa ataatcgcca
     3001 caatcgcaat cgccacgcct aagtagttca ctttgtggat tttctcttta aagaagaatg
     3061 ctccaacgaa agtgcctaag caaattaccc ctaagttcat tccagtgaag actaaagttg
     3121 ggtcatcttt catggcttgg tgagcttgaa tatagaacag aatattgccg aagttcaaca
     3181 cgcctagcaa taagccggtt aagacacttg gaacgtgcca ttgagtgcgt ttaagtagca
     3241 aatagataaa cataaaacag cctgcaccga taaaggcaat cgaaagggtg acagggaaag
     3301 cagagcctga tttggcaatc tgtttaaata aaatatcgtt cacgccatag cctacccaaa
     3361 ccagagcaag gctgataatc gcaatttttc cgcctttttc cattccctga ttgcctttcc
     3421 ataataagca accgagtgcc acgaaagcta acagaagtgc aattaattta ttttgcgtaa
     3481 cctgctcacc aaaaatggtg aatgccgcca aaatcggcag gaacagcgat aaacgttgtg
     3541 ccgcatcggt tcggataata ccggcaaact ctagggcttt tgcttgcacc aagaaaatag
     3601 taggcaatgt gatacttaaa atcacaaaaa tataggaagt cgggttatta gcaataatat
     3661 cggtaatcga ctgcccttgg taatccggtt ttagtaataa aaacgtcatc gtggtagtca
     3721 cgatatagtt caccgcaata ctttggtcga tacgaatccc tttttggcgg gcgaatttaa
     3781 tcaacacgcc tacagtcacg ctacataaaa tcgctaaaat aagttgtaac atttcatttc
     3841 tccttttaaa aacgaaggct gtattctata aatatgctta aattttggct agtacaagcg
     3901 gttaaattta ccggaaaatt tgcaaatttt gcgagagatc cgaccgcttg cactcaaata
     3961 gtgctaaaat tttgtcatct tcaatttcaa tacttaacat aaaatggaaa aacgctttga
     4021 gattaatgaa cagggtctca gcattcgctg taaactgttt tatgaaaaag aattgcagca
     4081 gatcgagaat gtagtgattg tgttgcacgg ctttggttcg tctaaagatc tgaaatcgaa
     4141 taccaaattt ggggaacgcc ttagctcaaa atataaaggc tacgctgccc ttgcctttga
     4201 tttcccttgc cacggtgatg atgcccgtaa aaaactctcg gttgaggaat ccattactta
     4261 tctgcaactg gtgattgatt atgccaaaac cagcctgaat gctaaaaatc tgtatgccta
     4321 cggcactagt tttggcggct atttaacctt gaaatatctg gcggaaaaag gcaatccgtt
     4381 tcggaaaatt gcattgcggg caccggcagt acaaatctac cattcgttaa tgaaccgctt
     4441 gtcagaagag gaacggcaaa aacttgccaa agggcgagaa attttgtggg ggtttgatcg
     4501 ccagatgaaa atcagccaag ccttttttga tgagctaacc gatattaccc aaaacgatta
     4561 tttggattat gccgagcaaa ttttaattct gcacggcacg gaagatgaaa tggtggcgtt
     4621 aagcacttca cagcagtttg ccgataataa cgtgattgaa ctgctcccga ttgaaggggc
     4681 agatcacgct ttttctaacc ctaaattaat ggatatcgct attggcaaaa tcgtggagtt
     4741 tttcgcccca taacctagct tttggcgaat tgaaccaaca caggattaac tatcttttgg
     4801 taatcctcgg tattcagaat aatcgaacgt tccaacgtac cggcattaaa ggctaattca
     4861 gcataacgct caaacagact tggctcagcc accaataata aatcggggtg aaagctaaac
     4921 ggcggaattg ccccaaatac acaatcggtc aattctgcca cttcagccgg gctggcaagt
     4981 gaggctctta acccaccaag atgctctgca atttttgtta aatccgcttg gtaatcagca
     5041 ggtaatatag caagcacagc ttgctttacc ccattgcctt ttaccttgca aactaaggct
     5101 ttcgcccctt gcccgatttc tgttcctcga atttttgcca cttcttccga tttcccggca
     5161 gaaggatgtc ctaccactcg atagcgagct cgatgcgaat ctaataatgc tgtaagttgg
     5221 tggaaagttt gttctgacat catttctcct taatgataca caagcggtcg tttttaataa
     5281 aaaattggca attcagccga attttaacgc ccaaacattt tttcaggatt ttcaggctgc
     5341 tcaaccaaaa ttagaataga ggcatctccg ccccactctt tcggggcctg gtgcaacgcc
     5401 attacttttg ggtgctgaac caaccagcgt ggaatttgat ctttgagcgt gcgagtgcca
     5461 aagccggtca tcacactggc acaatatacc ttttcccgct cacaggctaa aatcaacgct
     5521 gccaactctt tcttcgcttt ttctcgagtt aaaccatgca gatctaaaaa cagctcgggt
     5581 tggaaatcgc ctcgccgtaa ctgtttgaga atataaggat caacatcttc tcgcagatat
     5641 ttcacttttt cattttcttc tttcagcaaa ggctcatatt catccgagaa ataaaattct
     5701 gtatcagctt tttcttttaa ttctcgcaat tcttgcaatt tcttgcgagg ttccgctttc
     5761 ggcacaaagg tattttgtgt cagctttttc gtgccttttg ctgcctctct gaataatgca
     5821 aattcatcgt ctaataacgt atcgttcatt atcttttcct tcttattcat ttttacattc
     5881 taacacaaag caaaatgtgg tataacacag ccattttaac aatacgaaaa aaggcacgcc
     5941 aatgtttaaa tataataccg aacttcttga tgaaatttcc gccctgccca ttgtgaatga
     6001 tttagtcact attcaagata tgatgcgttg ggggtatagc tattttaatg cctctgatct
     6061 ttattacggg cacggctacg ataatgcgtg ggacgaggca caacaattag tgttggcagg
     6121 gctttatttg ccgtttgatg taccggaaac actttattcc tctcgcttaa ctcgagttga
     6181 gaaagaacgt atcatcaatt taatctgtga gcgtttaggc tctcgcaaac ctgtagcata
     6241 ccttaccaac tcggcttggt tttgtggcgg tgaatattat gtcgatgagc gtgtgatcgt
     6301 gccacgttca ccgattggtg agctgatcaa aaaagggttt aaaggcatta tcaaaaacga
     6361 gccacatcga attttagata tgtgtaccgg cagcggttgt attgcgattg cctgtgccga
     6421 gcgttttccg gaagcagaag tcgatgcggt tgatctttcc cttgatgcct tagacgttgc
     6481 tcaaattaat attgagcgtc atcaggtgtc tcaccgagtt ttcccgatct gttccgatct
     6541 gtttaacaat ttaccgcaag ataaatacga cttaattgtg actaatccgc cttatgttga
     6601 tgaagaagac ttaggcgata tgcccgaaga gttccatcac gagccggcat tagctcttgg
     6661 ctcgggcaaa gatgggttag atttaaccaa gcggattctt gctcaagccg ctgattactt
     6721 aaatgatgat ggcgtgctag tctgcgaagt cggcaacagt atggtgcatt taatcgaaca
     6781 attccccagt gtgccgttta actggctgga atttgaacac ggtggcttag gggtgttcag
     6841 tttaaccaaa gaagaactag tgaaacatcg ccatttattt gcttaaatct gcctcccctc
     6901 tctctgatca atcattctga atgaatgatt gatctgtctc tctcccacaa ggggagagca
     6961 gacatacttc tattttaacg ctttttgtaa tcgcccttga ttttggctta ataaatcttc
     7021 ggctttctgc ttatctaagt tacctaaaat catcataatt gccaatttag cgttattttc
     7081 ggctaatttt agtgtatctt cagccacttc tcgttcacat tctgtcgctt gcatcacaat
     7141 ccgaattgct ctagctttga gtttttcatt agttgcttgc acatctacca ttaaattttg
     7201 gtagcattta ccgattaaaa tcatcgacgc agtagtgagc atattcaata ccaatttttg
     7261 agctgtgccg gatttcatac ggctggaacc ggttagcact tccggcccga caacggtttc
     7321 aatcgcaata tccgcaattt gtgccattgc cgaatttggg ttactggcaa tcgacaccgt
     7381 ggtcgcacca agttgcttag catattccat cgcccctaac acataaggcg ttcgcccact
     7441 ggctgcaatc ccgaccaata catctttttc gctaaaattg accgcttgta aatctacttt
     7501 gccttgctca cgattatctt ccgccccttc aatcgggaaa cgtaatgccc gctcaccacc
     7561 ggcaattaat ccaaccacca tttcaggttt tacgccataa gtgggcggac attccgaagc
     7621 atcaagcacc cctaatcttc cgctcgtgcc ggcaccgaca taaaccaatc gtccaccttt
     7681 ctcaaaggct tgcacaattt tttccaccgc ttgtgcaatt tgaggcaggc actgctccac
     7741 cgcaatcgct acttgtttgt cttcttggtt gatgacttgg actatatcta acgctgaaag
     7801 gcggtcaata ttcatcgaat tcggattacg ttgttcggta atcatctgcc ctaaggcatt
     7861 caatagttgc gacacttaaa cctctttaat cacaatacat ttaatttggc gttctgtatt
     7921 tctcacaatg gttcgaatat tcatttctac caccacatta tcccgctcta tcccaaaaaa
     7981 ctcaccattt actcttaata atccagatga ttgattcccc tgaaaatcgg tagatagcaa
     8041 atcaacctta tcaaattcca atactctctt ttggattaat ttgatccatt cttgcttatc
     8101 aatcacttca cctgttgatg aataaagctc aaaatcatcg cttagtaatg tttgcaaagc
     8161 cgaaaaatca cggttcacca ttgcactata aagttctcta tttaaatcta ata
//
LOCUS       DANLXB010000116         8208 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLXB010000116 DANLXB010000000
VERSION     DANLXB010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8208
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..649)
                     /locus_tag="PXD41_001765"
     CDS             complement(<1..649)
                     /locus_tag="PXD41_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289282.1"
                     /translation="MAKQIFKQAPLPFVGQKRMFLAQVSQILNENITDDGQGWTIIDV
                     FGGSGLLAHTAKHIKPKAHIIYNDYDGYAERLKHIPDTNRLRKQIYDIIGKSTPKNKR
                     LDPDKKSQVINIIQSFDGYIDVNCVASWLLFSGQQINSLEDLFNKIFWNGVRQTDYPS
                     AEGYLDGIEVTHESFHKLLPRFQHKDKVLLLLDPPYLCTRQESYKQATYFDLIDFL"
     gene            complement(696..821)
                     /locus_tag="PXD41_001766"
     CDS             complement(696..821)
                     /locus_tag="PXD41_001766"
                     /inference="COORDINATES: protein motif:HMM:NF021626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Com family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6289283.1"
                     /translation="MQSLRLIEIRCKYCQKLLAKAKDVQHLEIKCVRCKSINKFN"
     gene            complement(968..1177)
                     /locus_tag="PXD41_001767"
     CDS             complement(968..1177)
                     /locus_tag="PXD41_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289284.1"
                     /translation="MFRNELQVIDGKRYIVLECQFRREWRVAIESRGTVTNGEAIEIC
                     QYWVKYKGVKPEQLKIVEVPDILKE"
     gene            complement(1180..1473)
                     /locus_tag="PXD41_001768"
     CDS             complement(1180..1473)
                     /locus_tag="PXD41_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289285.1"
                     /translation="MSESFSLEKALWEEPRPRLQLDLPCPVIKLEVGKRYYTINIHGV
                     DCYDGDMSFTEIDEWTYESIDDVQTKSRAEQGLLFASEADAQEWIDAMRNSSR"
     gene            complement(1466..1903)
                     /locus_tag="PXD41_001769"
     CDS             complement(1466..1903)
                     /locus_tag="PXD41_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289286.1"
                     /translation="MKTTQHILDEREQQHGNYDSFAKIYGGLRKVSDSHAEKLTWPQQ
                     IAVEMMLFKIARILNNGANHQDNYQDIAGYAMLGGGLYNPNVSAEVKALPKPLTDSIY
                     PESHLNKSSVWRLDLEFETKEEATEVLEALTGKSAGVSEVNNE"
     gene            complement(2142..2819)
                     /locus_tag="PXD41_001770"
     CDS             complement(2142..2819)
                     /locus_tag="PXD41_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein/antirepressor Ant"
                     /protein_id="HDL6289287.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHTAQSAHKILERITREFDCDPMTNWRVLKHLRGFDP
                     AFKKPTF"
     gene            complement(3067..3906)
                     /locus_tag="PXD41_001771"
     CDS             complement(3067..3906)
                     /locus_tag="PXD41_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL6289288.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            4136..4513
                     /locus_tag="PXD41_001772"
     CDS             4136..4513
                     /locus_tag="PXD41_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289289.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
     gene            4645..4833
                     /locus_tag="PXD41_001773"
     CDS             4645..4833
                     /locus_tag="PXD41_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289290.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDWLNIINANEEETE
                     TLVEWLNAFLQEVSVFVA"
     gene            complement(4837..5334)
                     /locus_tag="PXD41_001774"
     CDS             complement(4837..5334)
                     /locus_tag="PXD41_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6289291.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCAGVATN
                     EFETILDSLGDCLVICTIMRKQLKMEKLFSISHCDNTNFNCGVAAQIVQANIDLGNVA
                     SELSRGCDLSRLEDYLSGFENQLDLIAQFYKTDVQTALLYAYIQIKNRKGKMIDGVFV
                     KAEDL"
     gene            complement(5318..5518)
                     /locus_tag="PXD41_001775"
     CDS             complement(5318..5518)
                     /locus_tag="PXD41_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289292.1"
                     /translation="MTDTKRLDFIKKHKMEIRYNGLSDEFVISNHAENSQHFRMARNA
                     DLRTAIDEAMKEMRGLNNATTN"
     gene            complement(5515..6033)
                     /locus_tag="PXD41_001776"
     CDS             complement(5515..6033)
                     /locus_tag="PXD41_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6289293.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEVEQVIEPPTLVENNG
                     WISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIAVTH
                     WQPLPKLPKDNQ"
     gene            complement(6143..6946)
                     /locus_tag="PXD41_001777"
     CDS             complement(6143..6946)
                     /locus_tag="PXD41_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL6289294.1"
                     /translation="MDKSTIQQISTLAVAATKEVQTDFGTVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     NLVMKKTAAYKALCEINGSRRSQRDFSDFLEDWGGYLTAYHHEDEISIKNAVQAVRKM
                     TIDYARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVQAEQIEEAIATEFAEKLSDALSETSIKVNIGTIEI"
     gene            complement(7016..7375)
                     /locus_tag="PXD41_001778"
     CDS             complement(7016..7375)
                     /locus_tag="PXD41_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289295.1"
                     /translation="MAKTNVPEFLDELDCGIFKDKLATALSEVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(7411..7869)
                     /gene="ssb"
                     /locus_tag="PXD41_001779"
     CDS             complement(7411..7869)
                     /gene="ssb"
                     /locus_tag="PXD41_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6289296.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDTTAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSSSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF"
     gene            complement(7872..8069)
                     /locus_tag="PXD41_001780"
     CDS             complement(7872..8069)
                     /locus_tag="PXD41_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289297.1"
                     /translation="MARKIDAGVEIVEVDKLFIAKFFYDGKLQHTTYPQYSRQNAIML
                     INRKIERFNVGRDKPIKLYKE"
     gene            complement(8053..>8208)
                     /locus_tag="PXD41_001781"
     CDS             complement(8053..>8208)
                     /locus_tag="PXD41_001781"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289298.1"
                     /translation="ALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQVESNGNQYCG
                     GKYGTKN"
BASE COUNT         2143 a         1646 c         1609 g         2810 t
ORIGIN      
        1 ttaaaaaatc gattaaatca aaataagtgg cttgcttata gctttcttgg cgagtacaaa
       61 gatatggcgg atcaagtaat aacaatacct tatctttatg ctgaaaacgt ggtaatagtt
      121 tatgaaaact ttcgtgagta acttctattc catctaaata gccttccgca cttggataat
      181 cggtttggcg aacaccattc caaaatattt tgttaaatag atcctctaaa ctattaattt
      241 gctgtccgct aaatagcaac caagaagcca cacaatttac atcaatatac ccatcaaaag
      301 actgaataat attgataact tgagatttct tatcaggatc taatcgcttg tttttaggcg
      361 tactcttccc aataatgtca taaatttgct tgcgtagcct atttgtatcg ggaatatgct
      421 ttagccgctc cgcatatcca tcataatcat tgtagatgat gtgagctttt ggtttgatat
      481 gtttggcagt atgagctaat aacccactac caccaaatac atctatgatt gtccaacctt
      541 gtccgtcatc agtaatattc tcatttaaaa tttgagaaac ctgagctaga aacattcgtt
      601 tctgacctac aaacggaagt ggggcttgtt taaagatttg ctttgccata gttctcctat
      661 ggcgttcagg cgttcttaac gctcagacac tcaattcagt taaatttatt gattgattta
      721 caacgtacac atttaatttc taaatgttgt acatctttcg cttttgccaa taatttttgg
      781 caatacttac agcggatctc aattaatctt aatgattgca tataaataca cttttacttc
      841 attttttgat aaaattccgc ctacctagct aggtggcggc gtatggctat atgcaagcgt
      901 gctttgcgta gctggcattt taagtgttac cgcacttata atgtcgccgt ttttaactca
      961 tttgtcctta ttctttcaga atatctggca cttcaacaat tttcagttgc tcaggtttta
     1021 ctcctttata tttaacccaa tattggcaga tttcgattgc ttctccattc gttacagtac
     1081 ctctagactc tattgcaact ctccattcgc ggcgaaattg gcattcaagt acgatataac
     1141 gtttaccatc tattacttgg agttcatttc taaacatagc tacctactac tatttcgcat
     1201 tgcatctatc cattcttgag catctgcttc actggcaaat agtaaccctt gttcagctct
     1261 gctttttgtc tgcacatcat caatactttc ataagtccat tcatcaattt cggtgaagct
     1321 catatctcca tcataacagt caacgccatg aatattgatt gtataatagc gtttaccaac
     1381 ttcaagtttt ataacagggc aaggtaaatc taattgcaat cttgggcgtg gttcttccca
     1441 cagtgctttt tctaaactaa atgactcact cattatttac ctcactaaca ccggcacttt
     1501 taccagttaa agcttccaac acctcagttg cctcttcttt ggtctcaaac tccaaatcca
     1561 gccgccaaac agagctttta ttaaggtgtg attcggggta aatactatcg gttaatggtt
     1621 ttggtaatgc tttaacttct gccgacacat ttgggttata aagtcctcca cctaacattg
     1681 cataaccggc aatgtcttga taattgtctt gatgatttgc tccgttattt aaaattcggg
     1741 caattttgaa taacatcatc tcaacggcga tttgctgtgg ccaagtgagc ttttctgcgt
     1801 gtgagtcgct gactttgcgt aaaccaccat aaatcttggc aaaactgtcg tagttgccgt
     1861 gttgttgttc acgttcatct aaaatgtgtt gagttgtttt catcgtgaat tttcctttag
     1921 aaatagccgc ttgcggaaca agcggttggg ttaattagcg ttgagccata caaattttgc
     1981 catcgcagtc gttgcgtaac tctagatggt cagcagcaac tgcaaaggcg gttaaaaaga
     2041 gtatgatttt tgcgtatttc atcgtctaat cctcaaaatt tgggtgtgga aatccgccgc
     2101 ttgatgtttc gcaagcggtc gggttttata attttttgtg attagaacgt tggcttttta
     2161 aatgccgggt cgaaaccacg aaggtgtttg agtacacgcc aattcgtcat tgggtcgcaa
     2221 tcaaattctc gggtaatccg ttcaaggatt ttatgagccg attgtgcggt gtggctatat
     2281 tcaaaaccct gtccgtagat ttcaggtgcg atatttgagc cgagtttttg aaacatcggg
     2341 tagatatagc ggaaagtgtg aatgccacgc acgaaagcga accaagccca tatgaggctt
     2401 tggagttcat cttcggtaaa gtcgaaagag tatttctttg gcggtggtgc aagcggtagg
     2461 ttttgctgat tattttgcaa cgcatattta ccagtcttgc gaatttgtgg cagaacttct
     2521 tcaaataccc acgcttcaaa cttttccgct tctggtttgc gtgatttgat aatcagtcgg
     2581 tataggtttg gttcgttgat gaagatcgct ttttgttgtc tctgcatttt atcggtgagg
     2641 tatcgtttcg ataccccatt ttctttacag tgtttttgca gagtaaggct ttcatttaca
     2701 taacctaaaa ttcggcaaac atctgcaccg caaaaccacg gttcttgatt tggatcgata
     2761 atgacacgaa cagcagatga attgaaattg aaaacaggga attgaacttg atttgacatt
     2821 ttttgtacct tttggattta agtatttaat ccgatcatta agtgggtgat cggggttcaa
     2881 cttaccctcc aaaagatggg cggagcttat tcagatgtat tgtatatcgc tctctcgccc
     2941 cgatcatttc ggattaaacc taaaatttag gtacaaaaaa accgctttat atcggaggcg
     3001 gaaaccgctt ttggaaagta agtgtggtta tcttagccga aagggcggtt ttttgtcaat
     3061 tagattttat tcttcaatta gcaatggctt ttctttcagt tcttcaatcg ctctggtttg
     3121 taacagcgag ctcatttgct gaatagccaa acggttgagc attgccagtc gctcttcttg
     3181 gctgtaacct tgctcaatta gtagggcgtt ttggctttcc aatgcagcaa ggacggtaag
     3241 ttgctcaacg gtagcgtggt ctcgcatatt gcctttcagg ttcggattgc ggtctttcca
     3301 ctgttttgcc gtttgtccga agagagcttg attgagaatg tccgcttcgc tggaataaac
     3361 gaaagtatgt tgttttgtat tcagcaatgc cggtatgatg tgagctttga tggcatcagt
     3421 atgaatgcgg tagttcgcct tgcttaaaat gcgttttacg ctccattcga gcttactttc
     3481 gttcgcttct tgctgtttga gtcgttggaa ctctttgatg agataaagct taaattctgg
     3541 actgagccaa gaaccaaatt cgagagcaat atctttgtgg gcgtaagtgc cgctaccata
     3601 tcgtcctgct tttgctacta gcccaatagc tcccgttgca gtccattttt tgacagacat
     3661 cacaaagcgg tttaagccga tgttgttttt aatttggtgt aattccacca aattaaaatt
     3721 tggattattc agctcttccc aaacttgaag aaattcaatg gtatttttat tttgaagcca
     3781 gtttttaatg agctggtcac tgtctccaaa agctttgcac atatcagtta ggctgatgta
     3841 atcctcacca tcacgagcgg ttactttgac ctccacgcct tgtacaatca ttacgctatt
     3901 tgccatttcg tttctccgtt tttaggtaca aaaaaagccg ttggtggacg gcttgaaagt
     3961 gcggttatct taatccgaat tgggggcggt gtcaattaga ttaatccgta taagtatgga
     4021 accaagttaa agagtagaac tacaacacat aaccaaaaaa tgaaattcat atcttgctca
     4081 gttttgattt tgtgtaaaat acgcttaagt ttgtttttca tttaggaaac ctttaatgtt
     4141 tagtttattg cgtgatgctt taacctttgc tgcaatgttt acagggattt tatttcctgc
     4201 aattattcat aaatacgatc tatcacttgg tacacaaatc caattactta gctttgttcc
     4261 agctttcttt gtgttgtgcc attttcttat taagcgaaaa tatcaacgtg attttgacag
     4321 actttcgtat ttatctgctg tggtttgcgt agcaatgtgt gcaggcgttg gagcatttag
     4381 ccaatcagaa atgattgagc taggttttaa agttgagcgt gttcttgatt atgtgactat
     4441 caaattctta ctctactttt ggagcttgct gttattgcca gttgtgctaa gaaaattgtt
     4501 tgggaaagat tagttggtta tttaaagaga gctatttgtc aaacctcaat atctattttt
     4561 gcgatctgca tcgaaaaaat aaattttcgt tctgacagta aaacgctttc gtagtaatct
     4621 cataaaaaac ataaggggaa cactatgaaa gagcttttca aacaatggct aatcaatcag
     4681 gactcgccat tcattaatag ctgtggcgtt gagtgtattt tgtcaaaagt tgatgactgg
     4741 ctaaacataa tcaacgccaa cgaagaagaa accgaaacgc ttgttgagtg gctaaatgct
     4801 tttctgcaag aggtttctgt ttttgtggct taggtactat aaatcttctg ctttcacaaa
     4861 cacgccatca atcatttttc cttttcgatt tttgatttga atataagcat agaggagagc
     4921 tgtttgtacg tctgttttgt agaattgagc gataagatca agctgatttt caaagccgct
     4981 taagtaatct tctaatcgag ataaatcaca acctctagat aactcacttg ctacattacc
     5041 taaatcaata ttggcctgaa caatctgagc cgcaactcca caattaaaat tggtattatc
     5101 gcaatggcta atgctaaaca gtttttccat tttgagctgt ttacgcataa tcgtacaaat
     5161 cactagacag tcacctagac tgtctaaaat agtttcaaat tcattggttg ctacacctgc
     5221 acataattcc ccaaactctt ccattagttt taacatttgc ttttgtgggg tagagccgtt
     5281 aattaaattg cggtcttccg cccattgttc gatgttttta attagttgtt gcattgttta
     5341 gtcctctcat ttctttcatt gcttcatcaa tcgccgtgcg taaatcggca tttcttgcca
     5401 tacggaaatg ctggctgttt tcagcgtgat tactaataac aaattcgtct gataagccat
     5461 tgtagcggat ttccattttg tgctttttga taaaatctaa gcgtttggtg tctgtcattg
     5521 gttgtccttt ggcagctttg gaagtggttg ccagtgggtt actgcaatca catcgtcatc
     5581 aagcccatat tgatttacac taagaaaata ccactcgtta tcggcaagtt ctcttgaaac
     5641 tattaaaatt aactgcattc ctgaaatatc gcataaccct agcacatccg tttcaatagg
     5701 tggtaatttg tcctcaatgg atatccagcc attattttct acaagtgttg gtggttcaat
     5761 aacttgttca acttccccaa ataactctga ttctctttct tcgtcggtta gtgggcggat
     5821 atctgatttt gctctaccta aaacaacacc ataaactgca tagggtaaat cataggcttc
     5881 atagctttcg tgatcatcca tgtcacccgc aaactcatag gcttcagtag caccatttaa
     5941 acagctttgt tttgcttgct ctaaggtttc gtgcagattt aggatatgta tatcatttga
     6001 tacatccacc gaaaaaaatt tgtcttcatt cattttcttt ctccaaaata ccaatagttg
     6061 agagaataat aaccgcttgt attcaacaag cggtcaattt tcattaaaaa cttacaagta
     6121 aacttataag ctaacttaca agctagatct caatcgtacc gatattgacc ttgattgatg
     6181 tttcgctaag tgcatcggat agtttttccg caaactcagt cgcaatcgcc tcttcaattt
     6241 gctcagcttg aactaagcgg gcggttaata ccggctcacc gctaccggtt agcacctgta
     6301 cacgcagagt aaatgatcga gtgtctaagc cgttatatgg gttgcaagta aatacaaggt
     6361 gagttggtag ttgcagtgta gatttagctt ccaccgattc cattgctgat tttttggctg
     6421 cgaaatcgct gagttcatgt tcttcgtttc gggcgtagtc aatcgtcatt ttacgcaccg
     6481 cttggacggc atttttaata ctgatttcat cttcgtggtg gtaagcggtc aagtagccgc
     6541 cccaatcttc gaggaaatca gaaaaatcac gctgtgagcg gcgtgagcca ttaatttcgc
     6601 atagagcttt gtaggctgcg gttttcttca tcaccaaatt agcacgatgt ttagcgtgac
     6661 cggcttgctc tcggttgccc atatcgaata caatttccgc actcattttc tcttggtcaa
     6721 taaagcattg tgcgttttct tgggcattgg cggtagcata ttcaatcagg ctaccaaaac
     6781 gttgcgttga aaacgctgca cggaattgat tacggtgagc ttggaaaggc tctaaatttt
     6841 gtaatttaat gccttcaggt aacattactg tgccaaaatc agtttgaacc tctttagtcg
     6901 cagctacagc aagagtagag atttgttgaa tagttgattt atccattttg agttcctttt
     6961 tgtttaagta aaaataaagc cacgcattaa cgtggcttgg attgaaaata attgattatg
     7021 cagcagcttt agagagagcc tttaaaccgc tagggctttc ttttactgcc gtttctgttt
     7081 tttcaggtgt agcagataat gccccacctt tatgaacata cattggtgtg gcggtagtat
     7141 cttcttcggc tgacttacca cgtttggtcg gtttgacata gctcaatttg tgctgaattt
     7201 gaacagatgg gctgtcgcta tccattttgt ctaagctaaa ttcaaccgta actttccctt
     7261 tcttatcgtg ggttagtacg cctaacgcca cttctgaaag agctgttgcc agcttgtctt
     7321 tgaaaatacc gcaatctaat tcatctaaga attcaggtac atttgttttt gccattttgg
     7381 gttctcctaa ttagggtttg aataaaatta ttagaacgga atatcatcat caaaatctcg
     7441 tgattctgaa tccgtcatta cgtggttata tggattggtt ggcggtgggt ttcctgccgg
     7501 ttcggttgcc caattattat tgctgtttcc gctgcttgag ctaccaagca tttgtagctg
     7561 atcagcgatg atttcagtcg tccagcggtc tgtgccgtct tgggcttgcc atttgcgagt
     7621 acgtagtttg ccctcaacat agacttgtga gccttttttc aggtatttgc caataatgtc
     7681 agctaaattc cgaaaggcga taatgctatg ccactctgtg gcttgttttt tatcgcctga
     7741 tactttatct gtccattcgg tcgaagttgc tacgctgatt ttggcggttg tatcgccgtt
     7801 tggcattgtt cgcaattccg ggtcgttacc taggcgaccg acaataatca ctttgttaat
     7861 tcctgccatt gttattcctt ataaagttta attggtttat ctctgccaac gttgaaccgc
     7921 tcaattttgc ggttaatcaa cataattgcg ttttggcggc tgtattgtgg ataggttgtg
     7981 tgctgtaatt tgccgtcata aaaaaacttg gcgataaata gtttatctac ctcaacaatc
     8041 tcaacaccgg catcaatttt tcgtgccata tttccctccg cagtattgat tgccattact
     8101 ctcaacttgc caaacgcctt gatttcgttc gcatttgtaa cgttgcattt gtatgtggtc
     8161 gtcataatcc attcgcccga caatgcctaa tagcaaaatt agcaaggc
//
LOCUS       DANLXB010000117         8197 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLXB010000117 DANLXB010000000
VERSION     DANLXB010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8197
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            4..720
                     /gene="arcA"
                     /locus_tag="PXD41_001782"
     CDS             4..720
                     /gene="arcA"
                     /locus_tag="PXD41_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL6289299.1"
                     /translation="MPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLSTN
                     EINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYITKP
                     FNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEVNK
                     LPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHPNT
                     PEIIVTIHGEGYRFCGNIEP"
     gene            740..1258
                     /locus_tag="PXD41_001783"
     CDS             740..1258
                     /locus_tag="PXD41_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL6289300.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(1336..2565)
                     /gene="serA"
                     /locus_tag="PXD41_001784"
     CDS             complement(1336..2565)
                     /gene="serA"
                     /locus_tag="PXD41_001784"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL6289301.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(2602..3261)
                     /gene="rpiA"
                     /locus_tag="PXD41_001785"
     CDS             complement(2602..3261)
                     /gene="rpiA"
                     /locus_tag="PXD41_001785"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL6289302.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(3406..4740)
                     /gene="glmM"
                     /locus_tag="PXD41_001786"
     CDS             complement(3406..4740)
                     /gene="glmM"
                     /locus_tag="PXD41_001786"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL6289303.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(4766..6298)
                     /gene="ilvA"
                     /locus_tag="PXD41_001787"
     CDS             complement(4766..6298)
                     /gene="ilvA"
                     /locus_tag="PXD41_001787"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL6289304.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(6559..7152)
                     /gene="slyD"
                     /locus_tag="PXD41_001788"
     CDS             complement(6559..7152)
                     /gene="slyD"
                     /locus_tag="PXD41_001788"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6289305.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(7255..7395)
                     /locus_tag="PXD41_001789"
     CDS             complement(7255..7395)
                     /locus_tag="PXD41_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289306.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(7467..8153)
                     /gene="aqpZ"
                     /locus_tag="PXD41_001790"
     CDS             complement(7467..8153)
                     /gene="aqpZ"
                     /locus_tag="PXD41_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL6289307.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
BASE COUNT         2395 a         1914 c         1551 g         2337 t
ORIGIN      
        1 aagatcccac aaatcttaat tgttgaggat gagttagtaa caaggaatat gctgaaaagc
       61 atttttgaag gagaaggata tcaggtattt caagcatcta acggcgagga aatgcactct
      121 gttctgagta caaatgaaat caatcttgtg ctaatggaca ttaacttacc gggaaaaaat
      181 ggattaattc tcgcccgaga aattcgagag aatatgaagc taccattaat gtttttaacc
      241 ggtcgcgaca atgaaattga taagatcctc ggtttagaaa taggtgccga tgactatatc
      301 actaaaccgt ttaatcctcg agaattgact atccgagcga gaaatttatt gcaacgaacg
      361 atgatagata aagaaaacga cgttgtaaaa gagcaatctg aaattgaaag ctatcgcttt
      421 aacggttgga tcttagacat taacagtcat agtttaatct caccagaagg tgaggtaaat
      481 aaattaccac gtagtgaatt tagggcttta ttacattttt gccaacatcc tggaaaaatt
      541 caaacacgtg aagatttatt gaaaaaaatg accgggcggg aactaaaacc tcatgataga
      601 accgttgatg ttactattcg ccgtattcgt aaacattttg aagaccaccc caatacccca
      661 gaaattattg tcaccattca cggtgaaggc taccgtttct gtggtaacat cgaaccttaa
      721 tcaagatagg agtaatttta tgaaaaaatt aactattgtc gcattaactt gcttattttc
      781 tacccatcta ttagccgctc ctgtcggaaa tacatttact ggcatcggtg tcggtgtaga
      841 tgtaactaca acaaaataca aagttgaagg agtaaaaggc aaggattcca caggtccggc
      901 attagttgtc gattatggta ttgagcaagg caataacttt gtaggcgttg tacaaggaaa
      961 agcaaaagta ggtagtacaa aagtatttag cgatgtaaaa caaaaaaata aatatactat
     1021 agcttatcaa caaggttatc gtgttggatc cgatttatta ccttatgtaa aagtagatgc
     1081 cagctcaagc aaaatcggta atgaaaccta tcgtggcttt ggtttcggtg ctggtgcaaa
     1141 atatgcagtt tcaagcgatg ttgaattagg tgcagaatac actcgcgata atttaaaacg
     1201 tagcggcaca aaattaaaag gtaacgcttt caccgcgaat gcaacttatc gtttctaatc
     1261 ttagcggtaa agttttctga aaaaataacc gcttgtaaca caaaagagcc tgaagtgatt
     1321 caggctcttt gccttttaat ataatactcg ggctcgaatc gtgccttcga tcgcttttaa
     1381 acgttgtaat gcttcatcaa cattgtcgct ctctacatca attacaacat aaccgatagc
     1441 tgcatcggtt tgtaaatatt gagcggcaat attcacattt gattccacaa aaatctggtt
     1501 aatttgattt aacatacctg ggcgattctc gtgaatatgt aataaacgtt tggtattagt
     1561 atgaagcggt aaggatactt cagggaaatt cactgccgtc acggttgaac cgttatctga
     1621 atatttcaca aatttattgg caacttcggt gccgatattt gcctgagctt cagaggttga
     1681 accaccaata tgtggcgtta aaatcacgtt atcaaacttg cacaatggtg acacgaacgg
     1741 gtcattaatt gatgccggtt cttccggaaa tacgtcaatc gccgcaccac gcaatgagcc
     1801 gtcttcaatc cgagcggcta atgcgtctaa atcgaccact gtaccacgag cggcattaat
     1861 taacaccgag ccttctttta attgagcaat gcgttctgca ctcattaggt ttttagtcga
     1921 gtcgatttcc ggaacgtgta gtgaaatcat atcgcaggtt gaaagcaaat gctctaatgt
     1981 cggcacttgc tgtgcattac cgagtggtag tttgttttca acatcataga aataaacctg
     2041 cataccaatg gcttcggcaa gaatactaag ctgtgaaccg atatgaccat atcccacaat
     2101 acctaatttc ttgccacgta cttcgtttgc acctgctgcc gatttattcc acaccccacg
     2161 atgcacttcc gcatttgcag tcgggacttt acgcattaat aaaatcatct ctgccagcac
     2221 taattctgcc accgagcggg tatttgagaa cggtgcattg aataccggaa tacctcgtct
     2281 tttcgccgca ttcaaatcaa cttggtttgt accgatacag aaacaaccaa tcgcaattaa
     2341 tttcggagct tgagccagta cttcttcggt taaaaaagta cgcgagcgaa taccaacaaa
     2401 gtgtgcatct ttaattgcat caattaattc ttgaccgtct aatgcttttt tatgcacttc
     2461 aatattggta taaccagccg ctaagagtac atcaattgcg ttttgatgta cgccctcaag
     2521 cagaaggaat ttgatcttgg atttatccaa agaaatttta gccatttttt gctcctaagt
     2581 atttgtattt gcaataataa attattctaa aataactgca ccttcaggtg tgccgacaat
     2641 ggttacattg gcaaaacgtt gtgcaaaaat accgttagtc accacgcctg caatattatt
     2701 aatggtatgt tccattttca acggctccat aattttaaag ttatgtacat ctaaaatcac
     2761 attgccgtta tcagtgacca cgccctcacg gtattccggc gaaccaccta aggctacgag
     2821 ctgacgagcc acataagaac gagccattgg gatcacctcc accggcagag ggaaagttga
     2881 acccagcaca tcaacttgtt tggatttatc cacaatgcag ataaattttt tcgctaatga
     2941 actcacgatt ttctcacggg taagtgctgc cccgccacct ttaatcatcg ccccttgtgg
     3001 cgtgatttca tcagctccgt caatatacac atctaattcc gtcacttcat tggcactgaa
     3061 tacttcaatg ccgatatcac gcaaacgctg ttccgaggct ttagaggcag caaccgctcc
     3121 tttaatctca tctttcattg aagcaagggc atcaataaaa cagtttacgg ttgaaccact
     3181 tcccacccca acaatagtgt ccggttttac aaattttaat gcagcttgtg ccgcaatttt
     3241 tttcatttct tgttgatcca tttttacctc cacttgtagg gcaaatcatc atttgcccac
     3301 ttcggcaagg cgaaaaaaat tttcgcccta ctacatctat tctacacata tatgtaacaa
     3361 gcggtcatat ttggcaaatt ttttaccaaa aacgaccgct tgtcattagt tacgttttac
     3421 tgcttcaaca atctcttccg cacagctttg agcaagtaca gcatcttcgc actccaccat
     3481 cactcgaatt aatggctcag tgcctgattt acgcaataaa atacgccctt tgcctgccaa
     3541 gcgtttttcc acatctgccg ctaccgcttt cacttcgtta ctttcaagcg gatttgccgc
     3601 ccctttctca aagcgaacat ttagcagaac ttgcgggaac agaggcactg cttttgccaa
     3661 atcattcagg cttaatttgt ggcttgccat tgctgctaat acttgcagtg aggcaataat
     3721 accatcaccg gtggtgtttt tatctaacac gataatatgc ccggagtttt cgccacccag
     3781 tttccagcct ttttctttaa gctgctctag tacatagcgg tcacccacgt tagcacgaga
     3841 gaatggaatg gctagctctt ttaaagctaa ttccaagctc atattactca ttaatgtacc
     3901 gactacaccg ccttgtaatt tgcctgaacg tagagcttct cgggctaaaa taaatagaat
     3961 ttggtcgcca tcaactttat tgcctaagtg atcgaccata atcaaacggt cgccatcacc
     4021 atcgtaagct agaccaacat ccgcacctgc ttctaccacc actttttgaa gtgctttaat
     4081 atccgttgca ccacattttt cgttgatgtt taaaccgtcc ggcttagtac cgatttcaag
     4141 cacttctgcc cctagctcac gcattacatt cggcgcgata tggtaggttg caccgttggc
     4201 acaatccacc acaattttat agccttcaag gcttagttca gacgggaaag tgcctttaca
     4261 aaactcgata taacgtcctg cggcatcatt aatacgactg gcacgaccta aatttgctga
     4321 atctacgcaa tccataggct tatcaagcat tgcttcaatc gcttcttcaa tttcatcagg
     4381 tagtttttca ccaaccgacg agaagaattt aatgccgtta tcgtaataag gattgtgaga
     4441 ggcagaaatc acaatgccgg cttccgcacg gaaagtacgg gttaaataag caattgccgg
     4501 agtcggcatc ggaccaacga atactgctga taaaccggct gcggttaaac cggcttccag
     4561 agccgattcc aacatataac cggaaatacg ggtatcttta ccgattaata cttttttcgt
     4621 gccttgggtt gccaacactt tacctgctgc ccaaccgagt tttaatgcaa attcaggtgt
     4681 aattggaaat ttacctactt caccacgcac accgtctgtg ccgaaatatt tacgagccat
     4741 tctaattcct aagattgata aaaatttact ttaaaaaata ttgatatgcc ggactttcgc
     4801 tcacattttg gaagcggtaa cctagctgtt ctaaatgtcg gtttaattct acttcatcgc
     4861 ctctgtttaa tgcaaatgcg gcaagaatat cgccataatc ggctccgtga gctcggtaat
     4921 ggaataacga gatatcccag ttagtcagca tttgtaagaa ttttagcaat gcccctttct
     4981 gctctggaaa ttcaaagcta tagagttgct catattgaat ggagcttgct ctaccgccta
     5041 ccatataacg aatatgggtt ttggcaatat catcgtccga taaatctgcc acatcatagc
     5101 cgttttgttg cagatcttta ataatctcta ctttttctgc cgagcctgaa attcgcaccc
     5161 ccacaaaaat acaggcttgt ttatcatcgg aatggcgata gttaaattcc gttaccgcac
     5221 ggttgcctaa aatctcgcag aattttaaga aactaccttt ctgttcagca atggtgactg
     5281 ccaataaagc ttcacgtttc tccccgattt cacaacgctc tgacacaaaa cgtaaggtgt
     5341 ggaaattcac attcgccccg gaaagaatgc aagctaagtt tttatcttgt aattgatgct
     5401 ctttcacata ttttttcaaa ccggcaaggg aagttgcccc ggacggctcg gaaatcgcac
     5461 gcacattttc aaaaatcaac ttcattgagg cacagatttc atcattatcc accaacacca
     5521 catcatcaac atattgctga cacaggcgga aagtttcatc gccaatgcgt tttaccgcaa
     5581 taccgtcagc aaaaagccca acccgttcta aatcggtcgg ttgcccttgc tttaaggcgt
     5641 gatataagca agcagaatct ttagattcga ccccaatcac tttaatattc ggcatcacct
     5701 gcttaattaa aaccgcaatg ccggcaatta agccgccacc gcccactgga ataaatacat
     5761 aatctaaatc cggcttttgt tgcaccagtt ctaagccgat tgtgccttgc cctgcaatca
     5821 ctgccgggct gtcaaacggg tgaatgaagg tcatacccaa ttcggtggaa agctcaatcg
     5881 ctttcgcctt agcttcatca aaattcgccc cataaagcaa cacttcacca ccatagccac
     5941 gtaccgcatc aaccttaatt gccggtgtgt tttgcggcat tacaatcaag gctcttaaac
     6001 ctaaatgttt ggcagaaagt gccacccctt gtgcgtggtt gcctgctgaa gccgcaatga
     6061 ctccagcctc tttttgtgct ttggataaat ttgagatcat cgcaaaagca cctcgcaatt
     6121 taaagctgtg aaccggctgt cggtcttcac gtttgataaa aatagagttg cctaaccgct
     6181 cagacagttt ttccattttc tgtaaagggg tcacttgcgc taagtcataa atatttgagc
     6241 ttaaaatcga gcgtaaatag tcgatagcgg attgggaatg ttgtgtttcg ttcatcattt
     6301 tgaaaggtta tttattgtta gattgagata aagacattgg taaatttcca aggaaaattg
     6361 accgcttgtt tggttattta gcaatggctt taacagggaa tatttcctct cgcccgtttg
     6421 cgggagagag acagcttaaa atttcgttca gaaattttaa gcagagagag gggaaacctt
     6481 ggatatcccc ctctccctcc gcaaatcttc gatttgctcc accctctccc gcaagcgggg
     6541 agaggggaaa tcacaaagtt agtgatgacc accgcaacca cagccaccgt gtccgtgatg
     6601 atggtgatga tcgtggtcgt gaccgccgca gcaaccatcg tgatcgtgat gatgatcgtg
     6661 cccaccacaa ccgcaaccgt gttcgtgtcc gccgtgaacg tgtccgtgtg cgatttcttc
     6721 cgctgtcgct tcacgaatgc caaccacttc cacagagaaa agtaattcct gaccggctaa
     6781 catatggtta ccgtccacca caacttcatc gccatctact tcggtaatta ccaccggtag
     6841 cggacctaaa tccgtgtccg caataaaacg catacccact tctaattcat cgacgcccat
     6901 aaatacatct ttcggtacac gttgaaccat attatcgttg tactcgccgt aaccttcttc
     6961 cggtttcaca cgcacttcaa acacatcgcc tacagctttg ccttcaaggg ctttttctaa
     7021 gccttctacc aagttgttgt gaccgtgtaa atattctaac ggttggttta ccggtgcttc
     7081 atctactaat acgccttctt gagtacgcac ttgatatgca atgcttggca ctaaatcttt
     7141 tgtaatgttc atattgaatc ctttaattca tcggttttat aaaatagcaa gccattgtaa
     7201 cgctttattt tatatttgca atctatctgg aaattttaac cgcttgtcag taaattagtc
     7261 gataatatca ggggttacgg tgtctaccac atcaactgcg gttcccacca ctccaccaac
     7321 caccgaagtt accaaacaac cacttaggaa aatagttgct gaaatcagcc cacatacttt
     7381 gattaatttt ttcattttaa aatcctttca aaaacaaaaa acagccctaa tcaagactag
     7441 agctgcatca tatttattcg cttaaattat ttttcttcag cgataaagcg ataaactacc
     7501 gcaccgataa ttgcaccgac aatcggagca acccagaaca accataattg ctcaatcgcc
     7561 cagctgcctt ggaataacgc tacaccggtt gaacgtgccg ggtttactga ggtattggtt
     7621 accggaatgc tgattaagtg gattaaggtt aaagccaaac caatagcaat cggagcgaaa
     7681 cctgctggag cacgtttatc ggttgcaccc ataatgatga ttaagaagaa tgccgttaat
     7741 accacttcaa ttaataatgc tgctgttaag ctatagccgt gtggcgaatg ctcaccataa
     7801 ccgttgccgg caaagcctgc tgtagcatca aaagtcggaa cacctgaagc aatggtgtat
     7861 aacactgcac cggcagcaat cgcaccgatt acttgggcaa tgatataagg cactaaatct
     7921 ttagcgttaa aacgaccgcc gactaataaa ccgattgaaa ccgccgggtt gaagtgacca
     7981 cctgaaatat gaccgactgc atacgccatt gttaatacgg ttaaaccgaa ggctaacgaa
     8041 acgcctgcat aaccgattcc taattcagga atgcctgctg ctaaaactgc actgccgcaa
     8101 ccaccaaaca ctaaccaaaa tgtcccgaaa aactcagcaa aatatttttt cattttttat
     8161 ccttacccta aagggtgaat cacacataag tgtatta
//
LOCUS       DANLXB010000118         8139 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLXB010000118 DANLXB010000000
VERSION     DANLXB010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8139
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            7..279
                     /locus_tag="PXD41_001791"
     CDS             7..279
                     /locus_tag="PXD41_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6289308.1"
                     /translation="MPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKVVLEACIEP
                     ELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            263..505
                     /locus_tag="PXD41_001792"
     CDS             263..505
                     /locus_tag="PXD41_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL6289309.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            517..1185
                     /gene="rluA"
                     /locus_tag="PXD41_001793"
     CDS             517..1185
                     /gene="rluA"
                     /locus_tag="PXD41_001793"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL6289310.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(1163..1738)
                     /gene="ampD"
                     /locus_tag="PXD41_001794"
     CDS             complement(1163..1738)
                     /gene="ampD"
                     /locus_tag="PXD41_001794"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL6289311.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            1798..2640
                     /locus_tag="PXD41_001795"
     CDS             1798..2640
                     /locus_tag="PXD41_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL6289312.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            2763..3404
                     /gene="pyrE"
                     /locus_tag="PXD41_001796"
     CDS             2763..3404
                     /gene="pyrE"
                     /locus_tag="PXD41_001796"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL6289313.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            3578..4667
                     /locus_tag="PXD41_001797"
                     /pseudo
     CDS             3578..4667
                     /locus_tag="PXD41_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(4732..5922)
                     /gene="metC"
                     /locus_tag="PXD41_001798"
     CDS             complement(4732..5922)
                     /gene="metC"
                     /locus_tag="PXD41_001798"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL6289314.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(5981..6520)
                     /gene="dsbB"
                     /locus_tag="PXD41_001799"
     CDS             complement(5981..6520)
                     /gene="dsbB"
                     /locus_tag="PXD41_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL6289315.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(6583..8124)
                     /gene="nhaB"
                     /locus_tag="PXD41_001800"
     CDS             complement(6583..8124)
                     /gene="nhaB"
                     /locus_tag="PXD41_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL6289316.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WGVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
BASE COUNT         2541 a         1617 c         1754 g         2227 t
ORIGIN      
        1 tatgctgtgc cgttattgtt tgaatacgac ccgaacaaaa gccaaattaa tttagccaaa
       61 tatggtattg attttgaaca ggcaaagttg ctttgggaag atgaacgaaa agttgtactg
      121 gaggcttgca ttgaacccga attacgctat ttcctgattg gcaagattta tgataaatat
      181 tggacagcgt tttttacacc aagaaatgat gttattcgtt taatttcagt tagacgttcc
      241 cgtaaaaaag agatctcata ctatgagaaa taccattagt gccgaagaat tagaacgtat
      301 cttcgatgaa ggcaaagaag atattttaca atactgcgat ctttctaccg ctcatcgccc
      361 ggggcaaatg aaaagggtga atgttgattt cccaaattgg atggtagaag cgttagataa
      421 gcaagccaga catttaggtg tgcctcgcca agccttgatt aaaatgtgga ttgcggaaaa
      481 attaccggtt caatcaccta ggtaagcgag tggcaaatgg cattaattga atataaccct
      541 ccattagaac catttttaga tgaggtttat cgggataacc atattttagt aattaataag
      601 cctagtggtt tattatcggt gccgggcaat cgtcccgaat attacgacag tgcaatgact
      661 cgagtacagc aaaaatatgg ctttaccgaa ccggctcatc gtttggatat ggcaacaagc
      721 ggtattcttt tgttcgccct aagcaaagcg gcggaaaaag aactaaaacg ccaatttcgg
      781 gaacgtgaac cgaaaaaaca ctatattgcg ttactttggg gcaaattagg tgaaaaagtt
      841 ggggataagg gcgaaatgaa ttttccgctg atttgcgatt gggaaaatcg cccccgccag
      901 aaaatttgct atgaacgagg caaaaaagcc attacccatt atgaagtgtt agctcattat
      961 ccgaataata tagcgagagt aaaactcacg cctatcacgg ggcgttcgca tcagctacga
     1021 gtacatagcc ttgcgttagg tcacccgatt attggcgata agttttatgc taatccgctg
     1081 gcaaaaagtt tatcgccccg tttatgtttg cacgcggagt cactaacaat tactcacccg
     1141 attacaaggg agttgatgac gtttactgct gagccgactt tttagcctcg ttcagtaggt
     1201 gtttgtaata tgcccaatca aaatattgcc ccgggtcgat tttccgttcc ggggcaatat
     1261 ggcaatgccc ggtgatgcgt tcatcggtaa tttgtggata gctttgctga atggctttgg
     1321 tcaaatttgc caaagattgg tattgagctt gagtaaacgg ctgattatta ctgccttcca
     1381 gttcaatgcc aatcgaatat tcattgcatt tctcccgccc ttcaaaacaa gagacgccgg
     1441 cgtgccacgc catatcgtta aaattcacat attgcgtgat ttccccctcc ctattaatca
     1501 aacaatgggc ggaaacccgt agatctttga tttcttcaaa ataagggtga gcggttggtt
     1561 cgagtttacc ttggaaaaac agatcgataa aatttccacc aaattcttcc ggcggtaagc
     1621 tgatgtagtg aataaccaac aaggaaatat cctcttgatc aggacgttgg ctaaaatgcg
     1681 gagacggcac ttgtttttga ccggttaaac agccctgttc gatttttaaa tttggcatag
     1741 tctaaatagg gtgaatacgt taaaatatgg ctcattttac tagaaaaaga gaagaatatg
     1801 ttaagttatc gccacagttt ccacgcaggc aaccacgctg atgtgctaaa acacattgtc
     1861 cagcttttga tcttgcgagc attaaaagaa aaagaaaaag gttttttata tcttgatact
     1921 cactccggtg tggggcgtta tagtctgtta agttttgaat cggaaaaaac aggcgaatat
     1981 ttagagggcg ttgcccgttt atgggagcgt gatgatttac cggaagaagt ggcattctat
     2041 attgatgagc tgaaaaaatt aaaccgtggc ggcaagttaa agtattacgc aggctcccca
     2101 ttattggcgg tacagcaact gcgtgagcaa gaccgagcca ttcttaccga acttcacccc
     2161 aatgattttc cgctgttacg acaagaattt gccaaagcga aaaatgtgca aaccaagcga
     2221 gaaaatggct ttcaacaatt aaaatccgcc ctgccgccta aagagcgtcg aggttttgtg
     2281 ttgattgatc caccttatga attaaaagaa gattatgaat tggtggttaa agcgatagaa
     2341 gagggctaca aacggtttgc cactggtgtg tatgccattt ggtatccggt ggtgcttcgc
     2401 caacatacca aacgtatagt gcgaggttta atggataccg gcattcgcaa aattctacaa
     2461 attgagcttg ccgttcgtcc tgatagcgac caacgtggaa tgacggcaag tggtatgatt
     2521 gtgatcaacc caccgtggca gcttgaaacc cagatgaaaa aaatcctgcc atatttaacc
     2581 gaggtgcttg tgccggaagg aacaggttct tggaaggtgg agtggattac gcctgagtaa
     2641 attaaatacg gatagcacaa gcgtggacgc ttgcgccatc ataaattctg atttgcaata
     2701 ttttttagaa aaataaccgc ttgtcttatc aagaagtggg ggaaatataa aaggaaaaaa
     2761 cgatgcaaca atacaaacac gactttattg aatttgcctt aagccgcaat gtgctgaaat
     2821 ttggcgaatt taccttaaaa tcaggcagaa tcagccccta ttttttcaat gctgggcttt
     2881 ttaacaccgg gcgcgattta gccaaattag gcgaatatta cgccaaagcc attcaagcca
     2941 gcggcattga gtatgatgtg ttattcgggc cggcttataa aggcattccg attgcaacca
     3001 cggttgccgt ggcactagcc aacctgttcg atgtggataa accttgttgc tttaaccgca
     3061 aagaggcaaa agatcacggt gaaggcggta atttaatcgg ttctccctta acgggcaaga
     3121 ttttgctggt ggacgatgtg attaccgcag gcacggcaat tcgtgagtcg atggaaatta
     3181 tcaatgccaa taatgcccag cttgccggtg tgctgattgc gttaaaccgt aaagagaaag
     3241 gcaagggcga gttgtctgcg attcaagaag tcgaacgtga ttacggttgc caagttttct
     3301 cgattgtgga ttttgatgat ttggtagcat ttattgaaac gtcgccacaa tacgctcctt
     3361 atttgccgaa aatgcgtgaa tatcgtgaaa aatacggtgt ttaacttttg caaaaaaaca
     3421 gcaaaaactc accgcttgtc actctctaat ctcaccatta tgaatcactt tcatcttttg
     3481 gtgagatttt ttcaattaaa aagccgataa attgattgtg agctttagct aattggctta
     3541 ggataaactc ctgtaataca ggagttggag aactaaaatg gcacatcaaa aattaccttt
     3601 tcacgcagac accgttggct catatttgcg ttccgatgct tggaaaaaag ctcacgcaga
     3661 ctataaagca ggcaacattt ccctcgaaca acgtgatgaa attgtagaag cggaagtgaa
     3721 aaaattagta caagcatcaa ttagatgcgg gcattcaagt tgttacagac ggcgaatatc
     3781 accgctcttg gtggcatatt gatttcttgg aaaatctgaa cggcattgaa ggctatgtgc
     3841 cggaaaaagc ctatgcgttt aaaggggttg aggttcgccc ttataataca cgttgttgcg
     3901 gtaaagtgtc ttggaatccg aatcaccctt ttattgagca tttcaaaaaa ttcaatgcga
     3961 ttgtaggtgg tcgtgcggtg gcgaaattta ccattccaag tccaaaccaa ttaatgtacc
     4021 cgattcagtg ggatcacggc atttacccaa accgtgagga atttgccaaa gatgtgcaac
     4081 aggcttataa agaggcgatt aaagcgttct atgatgccgg ctgtcgttat ttgcaaattg
     4141 atgatgtcta ttgggggtcg ttgtgtaata acgttggtca accgacattt gaagccgata
     4201 aagctcaagc ggtggcgaat attcaagcca ttcttgccga taagccggaa gatttaacca
     4261 ttaccaccca cgtttgccga ggcaactata aatcttctta tttattgaca ggggcttatg
     4321 atccgattgc cgacggctta tttgctcaaa ccaactatga tgggtatttc ttagaatatg
     4381 atgacgagcg ttcaggcggt tttgagccgt taaaacattt tgccaacaac aaagggcgtg
     4441 tggtattggg cttaattagt tcaaaattcc ctgaattgga agataaggaa gcggttaaag
     4501 cccgtattca agaagcggca aaatatgtgc cgttagagca gctttgccta agcccgcaat
     4561 gtggttttgc ctcaaccgaa gagggcaata ttatgtcgga agcacagcaa tgggcgaaag
     4621 ttcgtcttgt ggaggaaatc gcccaagaag tttggggcga agattaatta gagtgaaaaa
     4681 tgcccgtaac aagcgggcat tttttgtgaa ttttttgcaa attcaagcca tttagcgaat
     4741 gcggttaaaa ccttgttcta aatcggcaat caaatcttcc accgcttcca agccaacgtg
     4801 aatgcgaatt aatgttcccg tcagtttgcg ttcaatcgcc gggcggattt tggcaatttc
     4861 ttccggctga ttggcaagaa tcagcgattc aaacccaccc caagaatacg ccattgaaaa
     4921 cagttcaaaa tgctctagga agttggctaa tttgtcattc gagagctttt cgcaaagttc
     4981 aaatgaaaat agaccgcttg aacctaaaaa atcccgctta aaaaattcgt gccccgggca
     5041 gctttccaac gccgggtgat aaactgcttt cacttcaggg cgttgagcca gccagttagc
     5101 taccgcaatg ctactttgtt cgtgctgttt taagcgaatg cctaaggtgc gtagcccccg
     5161 agcggtgatg taagcggaat cagcatccac catttgcccc attaaataag agccttcacg
     5221 cagtttatcc caacaacggg cgttagaaac cgcagtaccg atcatcacat cagaatgccc
     5281 gactaaatat ttagtgccgg cttgaatgga aatatcaatg ccatattcta aagcagggaa
     5341 cagcacaccg gcagaccaag tgttgtcgat cataatcacg atttctgggt tgatttcacg
     5401 agcaacacgc acgagagtcg gaatatcagg cacttccatt gttagcgagc tcggcgattc
     5461 taaaaaaagc actttggtgt tcggttgcac aagggctttc aagccttcac caatcatcgg
     5521 gtcataataa gtagttgaaa cacccatacg ttttaacagc gcattacaga attcttgtgt
     5581 cggttcgtaa gctgcgcctg tcattaaaac gtggttgcct tgttccacaa aagctaaaat
     5641 cgcattggtg actgccgccg caccgcaagg gtaaaggtag caacctgctc caccttctaa
     5701 ttcacacatc gcttcttgta atgaaaaatg agtgagagtg ccacgtctgc cataaaataa
     5761 tgctcctttg tagcggtttt gtgtagcgtg ttttttctct tctaaggttt caaacactaa
     5821 agatgaagca cgctgaatca ccgggttaac tgctccttgt gtgttacgtt ttttacgccc
     5881 tgtatgaaca agtttggtgg aaagattttt atagttagac ataacttttc ctaaagtaaa
     5941 atgcataggg gcaaatcaac atttgcccct ttattaataa ttaacgaaac ataaagttat
     6001 ttctttgacg gctacgttta aattggctga ttagcacaat gaccgcaaca attaagtaaa
     6061 ccgcaaaagt aaagattagc cattgtgcca ttgaaaagcc gaacatttcc cattggcttt
     6121 ggctacaatt aaccggaccg ggggcaaaca cttgtggtag ccattggtca agcggcaagg
     6181 tttgcgggaa attaacttta aattcgcatt gattccatgg tgatggattg acctgataat
     6241 cgtggtgttt gattgaaagt actagccctt taaatgcgct accaagccaa attagaattg
     6301 ccaagtagcg aataatcgca tatctattac caagaaatcc taaaataccg gcaaataaaa
     6361 taccaaataa agcaactcgc tcataaatac acattacaca aggtactaat cccatcccat
     6421 gttggaaata aagcgctgtg ccttcaagta taagacagct taacattagt aaaaaccatg
     6481 cactgcgaga ttgtgataga tttttaaaaa aatagagcat agttattcct cattttgtga
     6541 acttaaggca ttctacctta tttggtatga gttatctata aactaacgtg taataaacca
     6601 tccccaattt atcattactt cagtcataga aggtagtaag aattctaacc ctaagaaacc
     6661 gacaatagat agaacaatgg tataaggtaa tgccatatag accattctgc cgtaagacag
     6721 tttaattaac ggcgcaaagg aggacgttaa taagaataag aaagcagctt gtccgtttgg
     6781 ggtagcaaca gaaggaagat ttgtgccagt attaattgca actgcaatca ggtcgaactg
     6841 ctcacgatct ataatgccgg catctagtgc ggttttagct tcattaatgt aaacagtacc
     6901 gacgaagacg ttatctgaaa tcatcgagag caaaccattg aaaatataga ataatgaaag
     6961 ctgtgaatgt ggttcggcag ataacacaaa ggcaatgatc ggctcaaata attttaaatc
     7021 aataatcacg gcaacaaccg agaaaaacac aataagcaat gcagtaaaag gcatagattc
     7081 ttggaatgct ttccctaaag tgtgttcatc agtaatgcca caaaatgcag tgcaaataat
     7141 gatgatggtt aagccaataa tccctacatc ggcaagatgt agcgctaagc caataattaa
     7201 ccaaattcca gcaatggctt gcaccagcat ctttaagcga tcttgtttcg tcattttttg
     7261 ttcttttagt tggctatagc gagcgagtac gccccaaact ttgctaggaa gccggtctcc
     7321 ataaccaaat aatttatatt tttctacaag aaagcaggtc gcaatcccac aaattaacac
     7381 gggtaagcta actggtaatg ctctaagtaa gaattcgata aatccccatt ccgcttggga
     7441 ggcaataatt aagttttgtg gttctcccac catggtcatt acgccaccta aagctgagcc
     7501 aataccggcg tgcatcaata aacttcttaa aaaaccacga aattgctcta aaatttcttt
     7561 attagagatg attttttcat cattggtaat atcagtagaa tcttcaaagt tattacctga
     7621 tgcgacttta tgatatacgc cgtagaaacc tgttccaacg ctaatgatta cagcaataac
     7681 cgttaaagca tcaagaaagg cggataaaaa agcagcgctt aagcagaaag aaagggaaag
     7741 aatttttttc gaatgaatgg cgacaagcag tttggtgaaa atataaagca ataattgctt
     7801 cataaagtaa ataccggcaa ccataaacat taaaagaaga ataacatcaa agtttgccat
     7861 aatttcttct ttaatgtggt gaggatttgt cataccgatt acaactgctt caatcgctaa
     7921 taaaccacct ggctgtaatg gataacattt taatgccata gagagagtaa aaataaattc
     7981 agcgactaga aaccagcctg caacaaaagg attgataaag aaataaatga gaggattgat
     8041 aattaaaaat gccaaaatgc acaatttata ccactcgggg ctttttccta agaaactttt
     8101 gaacagagca tcaatgctac tcatataaag gacctcaaa
//
LOCUS       DANLXB010000119         7915 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLXB010000119 DANLXB010000000
VERSION     DANLXB010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7915
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1217
                     /locus_tag="PXD41_001801"
     CDS             <1..1217
                     /locus_tag="PXD41_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL6289317.1"
                     /translation="RISEMLLNWILSPALIIYTAIIYAYVIFIAAKGQMPDGVVANVA
                     LPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALLPLTLIWYAIYIRFSHYGLTEARI
                     YLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAIILISVFILDPKTVALKDQTKRLDN
                     YLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEYFYSMLHYVARGMPAAQFKEKYGV
                     NSSYDLMSEIRERNTDPRYFEATNSELVRLTKADMANAREYITFSSQLYRPNSFSHQK
                     IENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCSSITQDPTEFVIYFKGLGTTIEFN
                     INDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKMDLGNSVLGLKHIELRFEDNIGYI
                     VESISTQYIMLK"
     gene            complement(1260..4289)
                     /locus_tag="PXD41_001802"
     CDS             complement(1260..4289)
                     /locus_tag="PXD41_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL6289318.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLLLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            4467..5324
                     /gene="menB"
                     /locus_tag="PXD41_001803"
     CDS             4467..5324
                     /gene="menB"
                     /locus_tag="PXD41_001803"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL6289319.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            5407..7809
                     /gene="mrcB"
                     /locus_tag="PXD41_001804"
     CDS             5407..7809
                     /gene="mrcB"
                     /locus_tag="PXD41_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL6289320.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         2336 a         1587 c         1751 g         2241 t
ORIGIN      
        1 accgcattag tgaaatgtta ctaaactgga ttttgtctcc ggcattaatt atctatactg
       61 caattattta tgcttatgta atttttattg cggctaaggg gcaaatgcca gatggggttg
      121 ttgcaaacgt agcgcttccc tatttagctt tcggcctagc tatacaagcg gtgcaattat
      181 tactaaaaaa tgcaaaatgg cagtggtttt attctcactt tacctattta gcacttttgc
      241 cgttaacatt aatttggtat gccatctata ttcgtttcag ccattatggc ttaactgaag
      301 cccgtattta tttagtgatt ggcacaataa ccttatctat ttgctatacc ttattactat
      361 ttaaacagtt ggcgcaatat cgtctctttt ctgcagtgtc gatagcaatt attttaattt
      421 cagtgtttat tttagatccg aaaacagttg cgcttaaaga tcaaaccaag cggttggaca
      481 actatttgct aaaacacaaa ttattagatg taaataacaa aatcagcaca aaagctgtac
      541 ttaaatacca agaatcatta aatgaaaacc gagatgaagc cgaatatttt tattcaatgc
      601 tccactatgt tgccagagga atgcctgctg cacaatttaa agagaaatat ggcgtaaatt
      661 caagctacga tttaatgagt gaaataagag aaagaaatac tgacccacgt tattttgaag
      721 ctactaattc tgagctggtt cgcttaacta aagcagatat ggcaaatgct cgtgaatata
      781 ttacatttag tagccaatta tatcggccta attcattttc ccatcaaaaa atagaaaata
      841 agctatgcca aaaactcctt tctcaaggtt actattttga gggaaatata ttaaatattg
      901 agtatcaata ctcagaaacg gctcaagact gctcttcaat aacacaagat cctactgaat
      961 ttgttatcta ctttaaagga cttgggacta ctattgaatt taacattaac gatattttga
     1021 aaaaaatctt tgctaaacat cagttatcta ttacccagca acacaaaaat gaggttttag
     1081 aaaagattaa aggcgattta ctcaaaatgg atttaggaaa ttcagtactt gggcttaagc
     1141 atattgagtt aagatttgaa gacaatatcg gctatatagt agaaagtatt agtacacaat
     1201 atattatgct gaaataaaag gagatgctcg ttcaattaaa tttgaacgag catttttcgt
     1261 taaaaactca atttaagcag ccactcaaaa ttagtctcat ttaaccgata ttgcggtttc
     1321 aaattcgggc cgcaagagtt tgagccaatg ccgctcattt tgtaatcgac acacagcacg
     1381 gtggaagggc tttctaccaa atcataactg tggcttttag tggttagctc ttcctgtgtg
     1441 taaggcgaaa gattaaaact aaacggctgt ggagaagtaa cagttatccc atttgcttgc
     1501 acataatgcg taccgaaatg gctgccgttt tcctgcggtt tgagataatc ggtatgattt
     1561 tctcgggcgc tggtttgata agctccgagt ttcgccaaat ggtatttgtc gatataactc
     1621 tcctgctcgc catagccaaa atagctcact tggttattcc gtttattcaa gaaaaaccgc
     1681 aagccaaagc gaggtaaaaa cggcaaatga gcggggcggg ttgcctgaac ctgaatcgtc
     1741 atttcgccat tcggggcaag atgataattc actttcaggg ttaaaatccg actttgagcg
     1801 gttgccacaa tgccacattc ggcagtaatg tttacgccgt ttttatcttg catcagttcg
     1861 gtatgatacg ccctggtgta acagttatcg tagccggctt ttttccaaaa ctcacgaatt
     1921 aagcggtcgt tatcggttgg ggctcgccaa atattgaaat ccaacggttg ctcaattact
     1981 gcctcgccgt ttttctcaat ccggctgaaa atgcctttga gtttatcgaa agtgtagcga
     2041 tagtcgccct gttgaatccg ccattcattt gcaaaatctt gcacaaaaat gaccgcttgc
     2101 gggcgtggat taagtgctgg agtgaccatc gcttgatgca gcgtgatttg gtcaaagcct
     2161 aagtgatgcc ctttttccaa cagagccgtg ctttcattta aagaataatc aagggttaaa
     2221 agttgcaatt tgccgtttgg ttcgggcagc gttagcagca aacaagcggt ctgatttggc
     2281 tgacaattta ccaaacattg tccctgcagg gtggtttcgc cgttttcgct gaaacagtaa
     2341 tgcacggtca gataatcagc taagtcgctg aaatccaact gatttttcag ccaaattttg
     2401 cccgctttta actcagctcg caccgggcga ttcacatttt tcacttctaa caaattagag
     2461 tgtggcacac gctgttggga aaccaagccg tccatacaga aattgccatc gtgcaaggtt
     2521 tcgccgaaat caccgccata gccgtatttt tcggtcttct gttcggcact tagctcagag
     2581 ttggggagca gaggagcatg gtcgcaccat tcccacacaa agccaccgca cgcaccgctg
     2641 tagcgttgga aggtttgcca ataatcttcc atatcaccac tcgaattgcc catcgcgtga
     2701 gaatattcac acaaaataaa aggtttgtgg ttggcagagt cggaaaaata ttcctctaac
     2761 cgctcggtgc ttgggtacat ctcgctgtat aaatcgaggt ttgaaagatc gttttgatgt
     2821 gccgaatgtt ggtaaatcga accttcgtag tgagttaaac ggcttggatc ccgttgtttt
     2881 acccaacggg ctgcgacttc aaaattttca ccaaagccgg attcgttacc aagtgaccaa
     2941 ataatgaccg aagtgcggtt tttgtctcgc tccacattgg caatgttgcg atctaaaatc
     3001 gcctgtttga acagcggatc tcttgcaaaa taacagaaat tatcgaccgc ttgttggcga
     3061 atttcttcct gtttgttcgg gtttggcaca ttcaggaaaa tgctgttttc cggactttca
     3121 atatacactg cactggagcc gtgagattca agatcacttt cggcaatcag ataaaaaccg
     3181 agctgatcgc acaattcact aaaccacgga gcgttcgggt aatgggcggt gcgaatagcg
     3241 ttgatgttat gggctttcat taagcgtaaa tccaccaacg cttgctcacg gctaatgctg
     3301 tagccggttt tcgggtcgga atcgtggcgg tttacccctt taaatttaat cggggcgttg
     3361 ttgaatagca tcacgccatt ttccacacga atctgacgaa agccgatttt ttgctcaata
     3421 atttcgtttt ggtagctcaa gcatagcgtg tagagtgtcg gatcttccgc attccacaaa
     3481 cacaaattgc aaatttcttg gcaaaaatca ccgcttgttt gctcgcagac taagcggttt
     3541 tcagggtcga aaagttgaaa atgcacagct tcggtgtagg tggaaaattg tgtttccacc
     3601 ttgagttctg cctttgaaag atcagcgttt aactggtagc ggataaagaa atcttgcagg
     3661 tagttttgct cacgttccaa aatataaaca tcacggaaaa tgcctgacat tcggaatttg
     3721 tcttgatctt ccaaataact gccgtcacac cattttagca ccaccacgac gaggctgttt
     3781 ttgccctgtt taagctgttt ggtgatgtca aattcattgg tgctgtggct gatttgcccg
     3841 tagccgacaa attcgccgtt tacataaaca aacaggcacg aatctacgcc ctcaaaattt
     3901 agcaaatagc gtttgttagg cttggggtta aacgtgattt cacgctgata caccccgcaa
     3961 gggttttggt gtggcacata aggcggatca aacggaatcg ggtagttgat gttagtgtat
     4021 tgatgggcat caaagccttg agtttgccag ttagacggca cggggatttg gtgggtaaat
     4081 ttggtgttga ggaaatcctc cggcagatcg tgcggacttg gatagaaatt aaacttccaa
     4141 tcgccattta gcaaagtaaa taactcagat tgttcccgtt ccaactgatt cggcgtttgc
     4201 cctttagcaa aaggaataaa ataagcgtgg tgtagcgtgg tattaaggtg caacacactc
     4261 gggtcttggt agtaattcgg taacgacata aaagccctat gatcaaaaag atataaatac
     4321 gaatacactt taattctctt ataaaatagg gcaatcaact atgtgaaaaa ttgtgaggcg
     4381 gatcacaaaa taatttcctc acctttttcc ttcgattccg ttataatcac aagaattttt
     4441 tatgtcattt ttcaaggaat ttaccaatgt tatatccaag cgaagaattt ttatatgcac
     4501 cggttgagtg ggttgatcac agcgaaggtt acaccgatat tcgttaccat aaatcaaaag
     4561 acggtatcgc taaaatcacc attaatcgtc cggaagtgcg taatgctttc cgtccgcaaa
     4621 cggtaaaaga gatgattgaa gccttttctg atgcccgttt tgatgaaaaa atcggcgtca
     4681 tcgtattaac cggtgaaggc gaatatgcgt tctgtgccgg cggcgaccaa aaagtgcgtg
     4741 gcgattacgg cggctacaaa gatgaaagcg gtgtgcatca cttaaatgtg ttggatttcc
     4801 aacgtgatat tcgtacctgc ccgaaaccgg tggtggcaat ggttgccggc tatgcgattg
     4861 gtggtggaca cgttttacat atgttatgtg atttaaccat tgccgctgac aatgcaaaat
     4921 tcggtcaaac cggcccgaaa gtggggtcat ttgacggcgg ttggggtgca agctatatgg
     4981 cacgtttagt cggtcagaaa aaagcgcgtg aaatttggtt cttatgccgt caatataatg
     5041 cacaagaagc gttagatatg ggcttaatca ataccgttgt gccttatgct gatttagaaa
     5101 aagagactgt gcgttggtgt cgcgaaatgc tacaaaacag cccgattgcc ttacgttgct
     5161 taaaagcagc attgaatgca gattgtgacg gtcaggctgg cctgcaagag cttgctggta
     5221 atgcaacaat gttgttctat atgacagaag aagggcaaga aggacgcaat gcgttcaacg
     5281 agaaacgtga gccggacttc agcaaattcc gccgcaatcc ataattgacg gcaaatacaa
     5341 gcggttcgat tttgcaaaaa atttgcaaaa atcgaccgct taccttttct aatttaagtt
     5401 aattttatgt cagatgttga gttaaacgag cagagcgagc aagagcctga gcaaaaaccg
     5461 aaaaagcgaa actatttcct ttcaacctta ttcaaaatcg gggtgatagg agcttgcagt
     5521 atggcttttt acggcattta tttagacggt aaaatccgta gcaaaatgga tgggcagata
     5581 tgggaattac cagctgaggt gtatgctcgt attgaaagca ttaaaattga agacaactta
     5641 acgcttgagc aaaccaaaca agcgttgctg gataacggct atcgtcaagt ttctcaagtt
     5701 gcgacaccag gcgatttcaa aattgaagaa aatcagctgg tgttgctacg ccgagctttc
     5761 ccgtttccag aaacaccgga atcgcaacga gtgcttcgtt taactttcaa acaagataaa
     5821 ttaacttata ttgaagattt ggtgcagggt aagttgatcg aggagttccg cttggatccg
     5881 aaattactgg cgttactgca ttccgatagc gatgaagaac gtcaagcatt acgcttacaa
     5941 caataccctc gcttgttaat tgagtcactg attttaaccg aagatcgccg cttttatcag
     6001 cacgatggga ttagcccaat cggtattgcc cgtgctttaa tcactaacta ccaagctggc
     6061 agaacagtgc agggtggcag taccttaacg caacagttag tgaaaaactt gttcttaagt
     6121 aatgaaagat cgttggtgcg taaggtaaat gaagcgttaa tgtcggtgat tttagacttc
     6181 cgttacgata aaaaccgcat tttagaaacc tatctcaacg aaatttattt agggcagaac
     6241 ggtagctacc aaattcacgg ttttgcattg gcaagccaat tctattttgg tcgtccgatc
     6301 caagagatta gcttagacca aattgcgtta ttggtgggaa tggtaaaagg tccatcactg
     6361 tataacccgt ggcgaaatcc gcaaggtgcg gtagagcgac gtaatgtggt gttgcgatta
     6421 ttgctggatc atcaagtgat caatcaagaa ctttacgctc tgttaagctc ccgcccgctt
     6481 aatattcgtg aaaaaggcac gatttaccgt gagcaacctg cctttatgca ggcattaacc
     6541 attgatttga aaaatgagtt aggcgaaatt aagtcagctc aactttccgg tactaaaatt
     6601 tttacgaccc ttgaccgtaa acagcaacgt tcagccgaac aagcagtgat taccggtttg
     6661 gaagatctgg aaagtaaaaa taaaaaagtc agcgatttgc aatcggctat tgtcgtggcg
     6721 gaataccgca caggtaaagt gagggcgata gtaggagacc gcttaaccca atttgccggc
     6781 tttaaccgtg cgattcagtc aaaacgccaa atcggttctt tagtcaaacc atcggtttat
     6841 gcgattgcct tggcacagcc tgaattattc cgtttaaata caccgatcca aaataaacaa
     6901 atttcaatta aggttggttc aacctactgg acaccccgta actacgaccg cagttttagt
     6961 ggctcggtga tgttaatgga cgccttagtc cgctctctga atattccaac ggtgaatatt
     7021 ggtatgaaag ttggcttaaa aaaagtcatt gccaaacaaa aagagatggg ctgggataat
     7081 gcggaaattc cgccttaccc atcaaccttg ctaggttcat attcgatctc gccttacgat
     7141 gtaacccgct cttatcaagt aattgccaac gaagggctga aaacaccatt aaccaccatt
     7201 gaggcgatta tttcgcacaa tggcgaaatg ttctatcagc gagatagcgg caaagtgagc
     7261 gagcaggtgc ttccaccgga agctgcggtt caaacaatgt atgcgatgca acaggttgtg
     7321 gaacgaggta cggctcgtag cttacaaaac gattttgcca aactgaaatt agccggcaaa
     7381 accggtacaa ccaataacgc tcgagatact tggtttgtgg gaattgatgg cgaacacgtc
     7441 acaaccgtct ggctgggtaa agataacaat ggggatacca acctcaccgg ttcaagtggt
     7501 gcattgtatg tgtataagca atatcttgag agagccttgc ctcaggcgta tagattaccg
     7561 aaacttaata cgatgcaatg ggtggggatt aatagctatg gtagctggaa ttgcgatagt
     7621 ggcagacaaa ttccagtttg gcgagataaa gggcaacgtt attgtaccag tgcaggtaat
     7681 gtagtggcta cagaaaaacc aagtgtttgg gatgcacttt cgctgaaaaa agaaaatatc
     7741 gaggctaaag cagaagaagc tgaagggaag caaccaatcc ctactgaaga agttgcacca
     7801 attgaataaa aataaatttg atagccatta tcattcaaga tacacaagct gatagattct
     7861 acctataaaa agtatatatt ataactattt gctagttttc attttggatt gtaat
//
LOCUS       DANLXB010000120         7884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLXB010000120 DANLXB010000000
VERSION     DANLXB010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            55..4251
                     /locus_tag="PXD41_001805"
     CDS             55..4251
                     /locus_tag="PXD41_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6289321.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(4306..5400)
                     /gene="mobA"
                     /locus_tag="PXD41_001806"
     CDS             complement(4306..5400)
                     /gene="mobA"
                     /locus_tag="PXD41_001806"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6289322.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            5487..5756
                     /locus_tag="PXD41_001807"
     CDS             5487..5756
                     /locus_tag="PXD41_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL6289323.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5820..6458
                     /locus_tag="PXD41_001808"
     CDS             5820..6458
                     /locus_tag="PXD41_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL6289324.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            6542..7318
                     /locus_tag="PXD41_001809"
     CDS             6542..7318
                     /locus_tag="PXD41_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6289325.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            7328..7582
                     /locus_tag="PXD41_001810"
     CDS             7328..7582
                     /locus_tag="PXD41_001810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL6289326.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            7584..7877
                     /locus_tag="PXD41_001811"
     CDS             7584..7877
                     /locus_tag="PXD41_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6289327.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2637 a         1559 c         1483 g         2205 t
ORIGIN      
        1 ataagacaga atagccagaa ttttttatta cttataagga taaacttctc atttatgaag
       61 accaaaacat ttactcgttc ttatcttgct tcttttgtaa caatcgtatt aagtttacct
      121 gctgtagcat ctgttgtacg taatgatgtg gactatcaat acttccgcga ttttgccgaa
      181 aataaaggac cattttcagt tggttcaatg aatattgata ttaaagacaa caatggacaa
      241 cttgtaggca cgatgcttca taatttacca atggttgatt ttagtgctat ggtaagaggt
      301 ggatattcta ctttaattgc accacaatat ttagttagtg ttgcacataa tactggatat
      361 aaaaatgttc aatttggtgc tgcaggttat aaccctgatt cacatcacta tacttataaa
      421 attgttgacc gcaatgatta tgaaaaggtt caaggagggt tgcacccaga ctatcatact
      481 cctcgattaa ataaattagt aacagaagtt gtgcctgccg cagtcaccaa tgcaggtaca
      541 tctattaaac cctacttaaa tgaagaacgc ttccctatgt ttcttcgtgc tggttcaggg
      601 acacaagcgc taagaggaaa agaaagtaat aaaacaactg gaatcgctgg tgcttatgaa
      661 tatcttactg gcggtaccac attacaatta tctaaaagct cccctgatca ctggttagat
      721 tattcaagta acctttatca agtaagctat ggaccacttt caacctatgc actacctggt
      781 gatagtggtt caggttctta cgcctatgat atgaacgaaa aacgatgggt attagttggt
      841 gtgctcaatt tctataatgg tatggataat caattcaacc gctctgcgat tatccgtaaa
      901 gatttccacg agaaaaaatt tgccgaagat attgcaggaa caatcaataa taccgtacaa
      961 aatgcacaat tcaattggac tgctcaaggt aaatccagct ctcttagtca atcaaataat
     1021 gtgcaaaaac tcaacgttga tctaaaagat agtagcattg caaaccaaaa cacttctctg
     1081 ccacaagaaa atcacggtaa aaccattaat tttaatggta aagatgcaac tattgtacta
     1141 aaacaggata ttgaccaagg tgcaggtgca ttaaatctga acgctaatct cactattcgt
     1201 cctgaaacag accaaacttg gcaaggtgca ggtattatcg tcggtaaaga taaaaaagtg
     1261 aattggcaag taaaaaatcc acaaggcgat cgtttatcta aactcgggga aggaacactc
     1321 tatgtaaatg gacgtggaca gaatcttggc gatatcagtg taggtgatgg tattgtaata
     1381 cttaaccagc aagccgatca ccaaggaaga aaacaggcct ttaatacagt aggaatcgta
     1441 agtggtcgcc ccactgttgt gctaggtagt gcagatcaag ttaatcccga taatatttac
     1501 tttggatttc gcggaggtcg tttagaccta aacggtaaca gcatcgcctt taaacgtatt
     1561 caaaacagcg ataaacatgc tcgtattgta aaccacaatc gcgatcacat ttctacctta
     1621 ataatacaag gccaagatcc tctcactagt aatgatctta tatggggaaa atgggcaagt
     1681 aatagcccag cagacattta cgaatatacc aatccttatc aaaataaacg caaagattac
     1741 ttccgtctga aaggtaattc gagagtatat tatccaacga atgctacaag taacgatcac
     1801 tgggaatttc tttccagtaa ccgcgagcaa gcaatacaga aaatcctaga tgccaaaaac
     1861 ttaagacagc gctatgacac gtttaatggt tttatagggg aagatgcttc caataaaact
     1921 aatgggatat taaatgtcgt gtttgataca aaaacagaag taaatacaga acaagataaa
     1981 ttaaagaata tctacacaat gtcgggagga tttaacctta atggtgaact cacccttaaa
     2041 ggtggtacat tgttgctttc tggtcaccca acgccacacg cttatgatat taagaataag
     2101 catgatgttg tgcgtgaaaa cgattggcaa gacagccatt ttactgctaa aaatatcacg
     2161 gtaaataaaa tggcacaact ctatatcggg agaaatgtca atgaagtaaa tagtcacttt
     2221 actgcgactg ataaagccaa actcaattta ggatttatta atcgttcaac gccaagttgc
     2281 tatgattctg aatacacagg cactacacat tgtgaagtgc aagcggtcat ttccgataat
     2341 atttttgcaa atctagcaac aaccgccatt aaaggtaatg ttaaattaca aaaccatagc
     2401 caattaaatt taggcaaagc aaacctcact ggttctgtac aagctgatca aacaactcat
     2461 atcactttag caaatcacag tcactggtta aacaatggta cgagccagat tgggcatctt
     2521 acaatggaaa aagggtcgat ccttagccta aacgataaat ttgctaccac ggaaatccca
     2581 gtccgattca acaagatgat catccaaggt aatctaaaag gtaatggacg aattaactat
     2641 accgcaaatt tagccaaggg cgaatctgat catctccaag ttgacggtat tgctgaagga
     2701 aattttgtcc ttgccgttag aaatagcaca actgaagcaa atccaaaaag ctcattaaac
     2761 ctactaagct taaaaaatag caaccaagaa ggcaataaag cttctatttc tctagaaaat
     2821 aattatgttg atctaggtac ttatcgttat gtattagaaa atcgtaatca caattaccat
     2881 ttatttaatc cattaatacc aaattcaacc tctaaagaga tgaatgctac atctgtatcc
     2941 tctattccaa aaaaggaatc tgttactaat gttcctactt tagataagaa agaaactgaa
     3001 caaaatctta ctcaactaca aaaagatttt tcagcacacc aattagaaaa tcaaaaagca
     3061 aaacaatcta tgataaatgc tcaatctgag ctaagacgac tcaattcaca actgaatgta
     3121 ttgcaaaaat atgtgaattc tcgtcgctta ggttactata ctcagcaggc agttttagaa
     3181 caaattagca ttattcaaaa taaaattaaa caaacacaaa caatatttaa tgacgctaat
     3241 gcaactgtaa aactcacaga tcaaaagcta gaagaagcca aattagctct aggctctgta
     3301 aacgatcttg tattaataaa agcctctgct ccagcaatgc aagcaactaa tcaagatacg
     3361 agtatgatga atattattca agcagattgg ataagccaat acgctaacac agcactttct
     3421 gaactctcgg cacaggctaa ttctgctctg caaatcagta atagcttaga tcgccaactc
     3481 ttcaaacaaa gcgataaatt caacgtatgg agcagcgtcg aacatcagaa aaccgagcat
     3541 aaatcagatt tataccgccc gtataaacaa caaaccaacc tgacccaact gggcatacaa
     3601 atgccgatag ataacggttt aatgtttgga gttgcattat ctaaaaacca cgctaacgcg
     3661 gaatttaacg agggtgtaaa cggtaaatcg aatctactaa tggcaagcct atatggtaag
     3721 tggcaatctc aacaaggcac ttttatcagc cttgatggca gctacggtaa agcaaaaaac
     3781 caactctacc tatttggtga aaaccacttt acccgccgaa tttcctctat tggtgctaac
     3841 attggacatc aatttgacct cgcaggagtt caaattcagc caacaatagg agcaagatac
     3901 taccatttca gcggccaaga ctatacacta ggaggagcga aaatcagctc accaaatacc
     3961 cactttatga catatcaagc gggtctaaaa gctagtaaaa ccttttcatt ggatgactgg
     4021 aaagttgaac caagcattac aacccactat gtggatgcaa gtaacaaacg cttagcagta
     4081 aacgtcaata ataacaatat caaccaacgt ttcggtcgct atctgaaaac cgaagctggt
     4141 atccgatttg aacataacca atggcaattc gacttacacg ctggtttcat taacggcaac
     4201 gaaatcaaaa aacaacattt tgctggtgtt aagctaggat atagctggta agaaaaagcc
     4261 cctagaacta tttctagggg ctttttctac tcttaaaaag agtatctaac ttgccttatt
     4321 ttctaaccaa ttcttaataa aatctgctat tcccccaata ttattaatat ccaaccaatt
     4381 ttctctctca agcgggtaat ccgttgcggt ggcaatcgtc cattggtcta gctctggcaa
     4441 tggtttttca atccctttgc ggtggagctg aatttttggc aaggtttcgt gtttaaagcc
     4501 ttctacgaaa acgagatcaa cctcttgcgg gttgaatttt gcaattaatt gagaaaattc
     4561 gaccgcttgt ttggtttctg tcattaatgc ccaacgttca tcgcacacaa tcattgtcgg
     4621 gtttgctcct gcttcacgta ggcggtagct gtctttgcct tttttatcta catcaacgtt
     4681 atggtgggaa tgtttaatca gcccaacccg aataccgcaa gcggtcaatt ttgggattaa
     4741 tttttccaat aaggtggttt tacctgtgcc gctgtagcct gtaattgcaa ggttttttac
     4801 agggaattgg cttactcggc ttaaatcttc caatgtattc acgttggtga atgccgattt
     4861 ttgttcggaa aaatcaactg ccacgctttt ttgtgattgg aagaacgcaa gcaattgctg
     4921 ttggtttgag cctaaatagg ctttcaaatc ttcttgtacc gaacgatgaa tcaacgcaaa
     4981 agtgggatgt ggacgctcac catcatgggc atatgcaatt tgtacgttat ttatccgcaa
     5041 agcagttttt aatttttgca ataacagctc aggcataaag ggcgtatcgc aaggcacaaa
     5101 aagcaaatag tcactttcaa tttgctcaaa tcctgccagc attccactga gtggaccttg
     5161 aaaatcaggc aagctatctt gatagtaaga aaaagcagga taaagctgct gatattgctc
     5221 aatagaacga ttgacattaa gccaaatgtc actaacttgt ggtgaaagtc gggctaaaat
     5281 gtgtgaaata agcggttttc cttcaaaaag ttgtaaccct ttttctaccc cattcattcg
     5341 acgagctaaa ccgcccgcta aaatcacggc tgaaatgcgt tcttctattg ttttactcac
     5401 agctttatcc cttaaaattt tgcaaaaata agagtaaaag tatattattt cgtttaattt
     5461 ccaacaagtt ttttaagggg taaaagatga aatgcgaacg tttagaagag ttattagagt
     5521 tacttggcga acattggcgt aaaaatcctg acttacacct cattgatatt ttgcagcagc
     5581 tttcagttga agtgggcgag cctgataatt tcaaagcgtt aagcgatgaa gtgttaatct
     5641 atcagcttaa aatgcgaaat gcaggcaaat ttgagcctat tcccggcata aaaaaagatt
     5701 atgaagatga ttttaaaacg gctttattgc gagctcgtgg aattttaaac gattaagatt
     5761 gtcttatccg ttagctagtt tagcatttat tatttatcaa catttttgaa ggaatcatta
     5821 tgaaaaaatt ggcattaaaa acggcatttg ttgcactttc tgcccttttt acatttaact
     5881 caacggcaat cgctgctgat ccaaccgcag gcaaagaata tatcgaagtg cgtaaagcac
     5941 cttctgcaca aaaagaagtg gtggaatttt tctcattcta ctgcccacac tgttatgatt
     6001 ttgaattaag ctacaaaatc ccaagccaaa tcaaagaaaa attaccaagc gatagcaaat
     6061 tagtgcaata tcacgttaat ttcttaggtc gccaatctga agatttaact cgtgcttggg
     6121 cattagcaat ggcattaggt gcggaagata aagtaaaaac cgcattattt gaaggtgctc
     6181 aaaaagacgc attcaaatca atggacgata ttcgctctgt attcttagca aacggcatta
     6241 cagctgaaca gtttgatagc ggtattaata gctttgcggt aaatggctta gtgaataaac
     6301 aagttcaatt agcggaagac ttccaaattc gtggtgtgcc tgcattcttc gtaaatggtc
     6361 aataccaact caacttagaa ggctttgcag attcttcatc aacgaatgat ttcatcaaac
     6421 gttatgttga tgcggttgtg ttcttaagca agaaataacc ccttaaaata gttagggttt
     6481 ttacaatgct gagtaggtaa atcctattca gcatttttta tatgcaaact cggagaacaa
     6541 aatgacaaag ttatctatcc taaaccttgt acctattcgt gaagggcaaa ctgccaaaca
     6601 agcggtcgat tctatggtga aattagcaaa acacgcggaa agtatcggca ttgaacgcta
     6661 ttggattgca gagcaccaca atatgaaaaa ccttgccagc tcggcaacac agctcctcat
     6721 tcagcatgcc ctttctcaca ctgaaaaatt aagagtggga tcaggtggcg tgatgttgcc
     6781 taaccatagt ccttatattg tggcagagca atacggtacg cttgaaacac tctaccctaa
     6841 ccgtgtagaa cttgggcttg ggcgagcacc aggcaccgat atgcgaaccg ctaccgcttt
     6901 acgccgtaat gcacaaagtc tgccatttcc tgatgaaatc agcgaactaa aaggttattt
     6961 tgaaggcaca aattctgtgt ctgcctaccc tgcacagggg ttgaatgtgc cgttttatat
     7021 tttaggctca agccctgaaa gtgcctattt agcagcagaa cgtggcttgc cttatgcctt
     7081 tgcttcacat ttcgctcctc gttttatgga cgatgcggtg cgaatttatc gcacacactt
     7141 taagccgtct gaagtgttag ataaacccta tgtgatttta ggtgtgaatg cgattgcggc
     7201 agaaaccgac caagaggcag aacagcttgc taccactcag actcagtttt tcttaaatgt
     7261 tgttaccaat gcccaaaact atttacaacc gcccgtcgaa tccgatgata aagtgtgaaa
     7321 aaattttgtg aaagcggaaa tcgtaccgca tttcgggcct gtttcgttcc aacaaaatgc
     7381 gttatacaac caagagaaac ccgttgttcg ccaaatgact gcttgttcac ttatcggtag
     7441 ccgagagagc attgaacaac agctcaagtc attaaaagca cgcattgaaa ttgatgaaat
     7501 tatggcggta agctacattt tcgatgagca aaaacagcat caatcctata cttggttaaa
     7561 agagattgca gataaggtgt gatatgagca aaacaatgca acaaaaagcc gctgatgcac
     7621 ataatatgtg taagctaaaa ggcgactcta tgttagataa ctcagaccgc caaattgcct
     7681 ttgaagcagt gtatgatagt gaagaaatag ctgtacaagc ggtcgaattt ttcacacaaa
     7741 aagcaaaatc ggtagaaacc gagccttgcg acattcaaag tgaaatcaca cccattatag
     7801 atggctttct gatgaaaatg tggataactt tcagttgcca agcagaagta atcttatttc
     7861 aaatggcggt gagatagata taaa
//
LOCUS       DANLXB010000121         7816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLXB010000121 DANLXB010000000
VERSION     DANLXB010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            461..646
                     /locus_tag="PXD41_001812"
     CDS             461..646
                     /locus_tag="PXD41_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289328.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            630..827
                     /locus_tag="PXD41_001813"
     CDS             630..827
                     /locus_tag="PXD41_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289329.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            830..1804
                     /gene="ssb"
                     /locus_tag="PXD41_001814"
     CDS             830..1804
                     /gene="ssb"
                     /locus_tag="PXD41_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6289330.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(1891..1967)
                     /locus_tag="PXD41_001815"
     tRNA            complement(1891..1967)
                     /locus_tag="PXD41_001815"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1931..1933),aa:Arg,seq:tct)
     gene            complement(1992..2068)
                     /locus_tag="PXD41_001816"
     tRNA            complement(1992..2068)
                     /locus_tag="PXD41_001816"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2032..2034),aa:Pro,seq:tgg)
     gene            2238..3098
                     /gene="folD"
                     /locus_tag="PXD41_001817"
     CDS             2238..3098
                     /gene="folD"
                     /locus_tag="PXD41_001817"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL6289331.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            3212..4663
                     /gene="thiI"
                     /locus_tag="PXD41_001818"
     CDS             3212..4663
                     /gene="thiI"
                     /locus_tag="PXD41_001818"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL6289332.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(4708..5415)
                     /locus_tag="PXD41_001819"
     CDS             complement(4708..5415)
                     /locus_tag="PXD41_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL6289333.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(5483..6457)
                     /gene="pfkA"
                     /locus_tag="PXD41_001820"
     CDS             complement(5483..6457)
                     /gene="pfkA"
                     /locus_tag="PXD41_001820"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL6289334.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(6564..7760)
                     /locus_tag="PXD41_001821"
     CDS             complement(6564..7760)
                     /locus_tag="PXD41_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL6289335.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         2417 a         1534 c         1708 g         2157 t
ORIGIN      
        1 taatttaagt tttcttaaac ttaattcatc aaaacgagct acggctcaat gctctttaac
       61 aattcggtgc ttgtgcggac gatattaaca acctcgggca gttgtaaagt aatgctttat
      121 aactcagtaa ggttggttag accctgacat acaaatttga acgacttgcc aaaaagaggt
      181 ggcaaggttt aggcaacaca ctcgcaaggt gtggagagct gaaaaggcaa cactggtatc
      241 agtcctaagc aatcacgctt atctcaagtt tgagtaagta cggatacaag cagcacccga
      301 cggaatggcg aaagccgggc gggcgacggc gtgggcagac acgcatttat tccaaagctc
      361 atttcaccaa gtgtgtttcg gaatacccac aactagacgc aagtcgctcc atttgcccac
      421 cgtaaaacgt gggctttttt taaccctaaa ggacaatcct atgaacaaaa tgaaacaact
      481 tgccccattt gccttgctaa ttttgctatt aggcattgtc gggcgaatgg attatgacga
      541 ccacatacaa atgcaacgtt acaaatgcga acgaaatcaa ggcttttggc aaatggaaag
      601 caacggcaac caatactgcg gagggaaata tggcacgaaa aattgatgcc ggtgttgaga
      661 ttgttgaggt agataaacga tttatcgcca agttttttta tgacggcaaa ttacagcaca
      721 caacctatcc acaatacaac cgccaaaacg caattatgtt gattaaccgc aaaattgagc
      781 ggttcaacat tggcagagac aaaccaatca aactttataa ggaataacaa tggcaggaat
      841 taacaaagtg attattgtcg gtcgcctagg taacgacccg gaactacgaa caatgccaaa
      901 tggcgattca gtcgccaaaa tcagtgtagc aacttcaacc gaatggacgg ataaaacctc
      961 aggcgagaaa aaacaagcca cagagtggca tagcattatc gcctttcgga atttagctga
     1021 cattatcggc aaatacctga aaaaaggctc gcaagtgtat gtggaaggca agctacgcac
     1081 tcgcaaatgg caagcccaag acggcacaga ccgctggacg accgaaatca tcgccgatca
     1141 gctacaaatg ctcggtagct caaacagcgg aaacagcaat aataattggg caaccgaacc
     1201 ggcaggaaac ccaccaccaa ccaatccata taaccacgta atgacggatt cagaatcacg
     1261 agattttgat gatgatatcc gggttcgttg gattaccaaa gaacaagcca agcagtttat
     1321 taataatatt agtactgatt ggatgaaaac tatctgctct tttgctttat taacaggagc
     1381 aaggcgaaca gaaatacttt ctatgacttg ggataaaata gattttatcc gtaaagtagc
     1441 gattgtttcg aatgatattg ccaaatctga aaaagcgaga tcgcttttac ttaatgatga
     1501 tgcaattgaa ttattacaaa agcagagagg gaaaaatcct aaatatgttt ttgtaggaag
     1561 caaagggcag gcattacaag atattaaccg caaaatattt aacaaagcga ctgaaaaatg
     1621 tttattggtt gatttccatt tccatgattt aaggcatact tgggccagtt ggcacgttca
     1681 ggccggcaca ccattattta ccttaaaaga attgggtggc tgggaaacat tagagatggt
     1741 aaagaaatat gcccatctta atgcagacca tttactcaac cacgctaact cagttaaatt
     1801 ctagtcacaa attagtcaca aagtattttt gacataggaa attaataact gatatttaaa
     1861 tgtaactatt tgaaatataa gggtaattaa tggcacgccc taaaggattc gaacctttga
     1921 cccacgcctt agaagggcgt tgctctatcc agctgagcta agggcgcaga tgaagataat
     1981 ataaaaagaa gtggtcggcg agataggatt tgaacctacg acccactggt cccaaaccag
     2041 ttgcgctacc aagctgcgct actcgccgac ataagatgtt gttgattata gatttctttg
     2101 cacaacagtc aatctttttt tgtgaatgtc ggcttaaatg attgaagttt atccgttatt
     2161 caaaattagc ttatcaaaaa ggctattttt tgagagaatg acgaatgttt tgccaagtga
     2221 tatttcggga ggtagtaatg actgcacaaa ttatttcggg gagtgaggtt tcttcacaaa
     2281 ttaaaaaaaa ggtgagtgag aaaatcgctc attatcttga acagggtaaa cgtaaccctg
     2341 gtcttgcggt cattttagtg gggaatgacc cagcctctca agtgtatgtg gggagtaaac
     2401 gcaaaagctg tgccgaaatt gggattgcgt cgaaatctta tgatttaccc gaagaaacca
     2461 cagaggctga attattagca ctgattgaaa agttgaatca agatgattcg gtcgatggga
     2521 ttttagtcca attaccgtta cctaaacaga tcgattcgac taaagtgatt gaagccatct
     2581 taccacataa agatgttgat ggattccacc cttataatgt tgggcgttta tctcagcgta
     2641 ttcccacttt acgcccttgc acgccatacg gtgtgatgaa gttgcttgaa acaactgggg
     2701 tagatttata tggtcaacac gcagtgattg taggtgcgtc taatattgtt ggtcgcccga
     2761 tggcgttaga attgttgctt ggtggttgta cagtcacagt tactcatcgc tttaccaaag
     2821 atttagagca tcacgttcgc caagcagata ttttagttgt ggcagtcggc aagcctgaat
     2881 ttattcccgg ggagtgggtt aaagacggtg ctatcgtgat tgatgtaggg attaaccgtg
     2941 gagcagacgg caaactaaaa ggtgatgtag agtattcagt tgcctcacaa aaagcggcat
     3001 ttatcacccc tgtccccggt ggggtaggcc cgatgacggt ggcaatgtta atgcaaaata
     3061 ccttgcagac gtatgaaaac catttacaag cggtctaatt ttacggatat tttgcaaatc
     3121 ctcggcattg gtcgaggatt tctttttctg ggctttttca gcagaaaagg ctaaaatact
     3181 tgccattttt attacacgat ccttattaaa tatgaaattt atcatcaaac ttttccctga
     3241 aattatgatt aaaagcgact ctgttcggaa acgctttatc aaaattttaa cctcaaatat
     3301 tcgcaacgta ttattaaaag agactgaaaa tgtgtctgtg gttcgccatt gggactttat
     3361 tgaagttcgg gcgaaagtgg acgaagaaac ggcattagtg ctggatttgc ttaaacgcac
     3421 gccgggtatt caccatattt tagaagtgga ggaaacccct tttacggata tgcacgatat
     3481 ttttgagcag acttatgccg cagtgaaagc tgaactagaa ggcaaaacgt ttagcgtgcg
     3541 ggttcgccgt aaaggaaagc acgatttccg ttctcttgat gtagagcgtt atgtcggtgg
     3601 tgggctgaat cagcggattg aaacggcgaa agtgaaatta accaacccag atgttacggt
     3661 cagaattgat attgaacatg ataaaatgtt gctgattaaa gctcgccacg aagggttagg
     3721 cgggtatcca atcggcacac aagaagatgt gttgtcattg atttcgggtg gttttgattc
     3781 gggtgtatcg agctatatgc tgattcgcag aggttctcgt gtgcattact gttttttcaa
     3841 tttaggtggt gccgcacacg aaattggcgt gaaacagatg gcatatcata tttggagccg
     3901 ttatagtacc tcgcacaaag tccgttttat cgccattaat tttgaaaatg tagtgggtga
     3961 gattttagaa aaagttgata acggacaaat gggcgtggta ttaaaacgta tgatggtgcg
     4021 agcggcaagc cgtattgccg agcgttttga tattcaagcg attgtgaccg gtgaggcgtt
     4081 ggggcaggtc tctagccaaa cactgactaa tttacgttta attgataagg catcagatac
     4141 gctggtatta cgtccgctca tcactcacga taaagagcag attattgcaa tggcaaaagc
     4201 gataggcact gacgatattg ctaaatcaat gccggagttc tgtggagtaa tttctaaaaa
     4261 tccgacggtt aaggcaatcg aaactaaaat tttggaagaa gaaggcaact ttaattttga
     4321 ggtactagaa caagcggttc aaacggcgag ttatttagat attcgtgaga tcgctcagca
     4381 aaccgaaaaa gaggttgttt cggttgaaac cacaacagaa ttgagtaaaa acgatgttgt
     4441 gctagatatt cgcagcccgg aagaggttga tgaaaaacca ttccgtttag acggggttga
     4501 agtaaaagaa ctcccgtttt ataaactttc cagccagttt agtacgcttg accaaagcaa
     4561 aacctacttg ctctattgcc aacgtggggt aatgagtaaa ctgcaggctc tttatttgaa
     4621 agagaatggc tacagcaatg taaaagtgtt tcgagtgaaa taatgcctct ttgattgcac
     4681 cttaatgatt gattaaggtg caatttttta ccaaataagg cttgctaaaa agagtaagat
     4741 cacaggaaat tcaagcattc caacttgttt aacattccag ccaaagcttg gcacaataat
     4801 ggctcgggca gttgcaatta aataagcaaa aaagaccgct tgtagagagc agagtatgta
     4861 aagcattgct aaaaccaaat gtattgcaat actgatttcc atataaattg ggtttcttcg
     4921 ctctcgcacc atactcttta tatagaaagt cgtagcaata aaaaataggg tagggtggag
     4981 cagaatctca aactgatatt gtttcgttac cagataataa gctgccattc ccattatgcc
     5041 aaaggttaga atgccggcaa tatcattcca taaattgcgt tcatcttttt gtttggcgta
     5101 gtgaacttgc actaacccaa gcggtagaat tatcggtaaa aattgcaaaa tcgaaggctg
     5161 agcgtagatc aaaggtaatg caaatagaat gcttaagcca aagtagattt tcgcccattt
     5221 tttattgcgt tcagttggct ttttactgaa aagtgagaga aaagggtagg aaaagaagta
     5281 gagaaacagc cacgacagcc caaagaaaat atgcaaagtg ctaaaaccac tttcaataac
     5341 ggcgtagaga aacggcaaca ttgccattgc taatgcaccg tgttggttgg atataacggg
     5401 tttttctttg aacattcaat ttccctctta atgtggcaaa taaaaaggcg actaaacagc
     5461 cgcctttaaa ttgtaagaaa agttagaata attttctaga ggcttcaaat aattcttctt
     5521 tgaacggacg acgcatatta ttgatcgcat caataatatc gtggtgaacc aactgctcgt
     5581 tttgaatacc gacacagtga ccgccaaagc cttgcagtaa taattccacc gcatagacgc
     5641 ccatacggga ggccaaaata cggtcgaagg cacaaggcga accaccacgt tgaatatgac
     5701 ctaatacggt tgcacgggtt tcattgccga aacgtgcttc aatttctttc gctaatgcgt
     5761 gaacatcggt catcaattct gtaattgcaa taattgaatg gcgtttacct ttgtggaaac
     5821 cttcttcaat gcttcgcatt aatgcatctt tatctaagcc tttttccggt acgatcacat
     5881 attcgcaacc accggcgagg gcagcactta gggttaaatc accacagtgg cgacccataa
     5941 tttccacaat cgaaatacgt tggtgtgaac ttgaagtatc acgcaggcgg tcaatcgcat
     6001 ctaatgcggt ttcaagggca gtttgatagc cgatggtgta atccgttccc acaatatcgt
     6061 tatcaatcgt acccggaata ccgatacaag ggtaaccaaa ttcttcggtt aataatttag
     6121 cccccatata agaaccgtcg ccaccaataa ccactaatgc atcaatgctg tattttttta
     6181 aggtttcgac acaatgtttg cgaacttctg gtcttttaaa atcagggaag cgggcagaac
     6241 ctaagaatgt accgcctcgg ttgatggttt cagacacgga acggcggtca agtgggatca
     6301 ctttatcgtg gtaaagccca tagtagccgt cttgaatacc acaaacctct aaaccttcat
     6361 taagtgcggt acgaaccaca ccacggattg ccgcgttcat tcctggtgca tcaccaccac
     6421 tggttaatac tgcaattttt ttgatttttt tactcattta aaaacacctt gttgataaat
     6481 taaagttaaa ttggaaactg gtgcaaggtt acaatattca gccttttcgt tctactaaaa
     6541 aatacgtatt tttttgattt agcttagctt tcttgcaaaa tttcaagggt aaaatctaga
     6601 gcgttgaaaa aatgctcaac atcttgttga ttattgtaat gggcaagtga aagtcgaact
     6661 gttccgacct cttctaaatg gcgtaaataa ggcttggcac aatgctcccc ttggcggatc
     6721 gcaattttac tttgggttaa gaaagcggca atatcggcag ggtgctgatt tttcaccaca
     6781 aagctaatag tcggtgtatt ttgttgcccg ataatttgca aattttgata agaatttaac
     6841 cgcttgcagg tgtattcagc caagtcataa agctgatgat taagagcgac aaaatcccat
     6901 ttttcgagcc aagctagcac ttgcccaaag ccgataatgc cggcgatatt cggcgtgcca
     6961 gcttccaagc gataaggtaa ctctgccaca gttaattcac tttccgtaat gtttttcagc
     7021 attttgccgc caaatacaag cggttgaatt tgctccaaac tttgcaattt gccggtaagc
     7081 acgcccacac cgtttggacc atacatttta tgggcggaaa aagcgtagaa atctgcatct
     7141 aatttctgaa cgtccacttg ctctgagcaa actgcttgag caatatctaa cacaatttta
     7201 gcagagcaag attggcggat aagcgggatt atttgttccg ctggctggcg aactcctgtt
     7261 acgttagaaa ctaaattaaa ggcaacaatt ttggtttttt ccgataacgc atttttaagg
     7321 gtttcaagct caatttcata cttatcatta agtggcaaca ccacgagttt cgcccttgta
     7381 cgctgtgcca actgctgcca aggaataaaa ttagcgtgat gttccgccac tgaaattaca
     7441 atttcatcgc ctgctgcaat ttgatgctcc aagccataag ccacggtgtt aatactttgg
     7501 gttgtaccgc ttgtccaaat caccgcttca cgagtttcca cattgaaacg ttttgcgact
     7561 aaatctcgag ctaattcata ttgttcggtt tgtggcaaat cgtactgact gcgatgcacc
     7621 gaccccgcag aagcgtaaaa ctcacttgtt gcttcaatga gtacatcagg tttcagcgtt
     7681 gtagcggcag aatctaaata cgtccatccg tcagattttt caaaaaaagg gaaatgggtg
     7741 cgaaattggg tgttaagcat aagttaattc ctaagagttg tggaaaattg agttaccaag
     7801 aaaataccta ttataa
//
LOCUS       DANLXB010000122         7775 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLXB010000122 DANLXB010000000
VERSION     DANLXB010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7775
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(68..289)
                     /locus_tag="PXD41_001822"
     CDS             complement(68..289)
                     /locus_tag="PXD41_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289336.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            complement(376..1173)
                     /locus_tag="PXD41_001823"
     CDS             complement(376..1173)
                     /locus_tag="PXD41_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289337.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            complement(1175..2107)
                     /locus_tag="PXD41_001824"
     CDS             complement(1175..2107)
                     /locus_tag="PXD41_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289338.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            2349..4082
                     /gene="dauA"
                     /locus_tag="PXD41_001825"
     CDS             2349..4082
                     /gene="dauA"
                     /locus_tag="PXD41_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL6289339.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            complement(4174..7002)
                     /gene="uvrA"
                     /locus_tag="PXD41_001826"
     CDS             complement(4174..7002)
                     /gene="uvrA"
                     /locus_tag="PXD41_001826"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL6289340.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMRFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            7157..7672
                     /locus_tag="PXD41_001827"
     CDS             7157..7672
                     /locus_tag="PXD41_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6289341.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
BASE COUNT         2185 a         1835 c         1534 g         2221 t
ORIGIN      
        1 taaagccaag caaacgcaaa gacgtttaaa attagcaaac ctatggttaa attccagcct
       61 agttccatca caacacctcc tttagctgcc gtaattttcg cccaagcgtc aaaaaaacat
      121 aaatactcaa taccaataat gctaagttag tcaatttaat caacgttggt tctttgccaa
      181 aaagtataac aggaattgcc aaaatcgcaa ctttcgctac atcaaccgaa attttagccc
      241 aatcgtctag cgtttctttc tctaccggtg ttttgaaaat gcttaacatt gaatacctcc
      301 ttttgggctt attatttaaa atttgacagc caaaaacaaa aggagaaatt cattttttcg
      361 atgcagatcg caaaattaat tgccgagtaa taatccatcg tcactcaact gctcgtggcg
      421 actttgttgg aaaagttgta acagatccgg cacgtccatt ttttgccgtt gctcgcccga
      481 aacatcaaac gccacttgcc cttggtgtaa catcacggtt ctatcgccat agtcaagggc
      541 ttgccgcatt gaatgcgtta ccattagcgt ggttaatttc tgttctctta caattttatt
      601 ggtaagttca agcacaaaat cggtggtttt cggatccagt gccgcggtgt gttcatctaa
      661 caataagata ttagacggct gaagtgatgc catcagcaag ctcaccgctt ggcgttgccc
      721 gcctgataaa cgccccattt gatcagtaag ccgattttcc aaacctagcc ctaacaaagc
      781 aagtttgtct ttgaataact ctcgcatttg gcgtttgatc gcaaagccca acccacgttt
      841 acgtccacgt tggtaagcca gtgccatatt ttcttcaatc gttaaacttt cacaagtgcc
      901 agccatcggg tcttggaaaa ctcgggcgac ttgatttgcc cgttgccaag tggtggattg
      961 gtttacctta tttccttgaa ttaaaatctc accggagtcc accgcacaat caccactgat
     1021 cgcatttaat aaggtagatt tacccgcccc attgctacca attaccgaca caaattcgcc
     1081 ttgctcaact tttagggata agcctctcag cacagggttc tcaattgctg tccctttgtt
     1141 gaaggtaata aataagttat tgagttcaat catattaacc tcgcttaccg agcaatttgt
     1201 gtttaattcg aggaaccgct aatacaatca ccaccaataa cgccgtaatt aaattcagat
     1261 cttgcgggcc aaagccaatg ccgtttaaag tttcgttatt taatgctagt gcgatgaaga
     1321 aacgataaag aattgagcca ataatcaccg caaaggtaag ccaaataatc cgttttaccg
     1381 aaaaaattgc ttccccgata attaccgccg ccaagccaat cacgatagtt cctaccccaa
     1441 tcgaaatatc tacaccaccg ttgctttgca catacaaagc accacctaag gcaattaacg
     1501 cattagaaat cgccatccct aaaatcgtca ttttattaat cgcaataccc tgtgctttcg
     1561 ccattcgact attagtaccg gttgcccgca cagccaaacc gatttcggtc gcaaaaaaga
     1621 ggtcaaacaa accttttacg ataataacaa ccagcaatgc catcactaat cgtactaagg
     1681 ctaactgtag atcgctttca atcggcatta catcgtaaat cgtggtttcg cctaaaatag
     1741 caatattcgg cattcccata atgcgtagat taatcgaata gagtgcgatc atcattaaaa
     1801 tactggcaag caatttttcg attttaaagc cgatatgcaa acttgcagta accataccgg
     1861 ctactgctcc ggcaagcgtg ccgtataaag ttgccagcca aggatcaact tgattcaaaa
     1921 tgctgatcac acacaccgcc cctcctaaag ggaaactgcc gtctgcggtc agatccggaa
     1981 aatccagaat tttataagaa attaataccc caagggcaac aagggaataa attaacccca
     2041 gctctaacgc cccaatccaa gtgatattag ttaaaaaggc actcaaaaaa tgaataagac
     2101 tgtccatttg tttattatag ttaatgaaat cacacaaatg cactactata gtagtacaaa
     2161 ttaaagtggc attttacgct attttcaaaa taaaatcagc taattatttg tatttgcaaa
     2221 tttttcgcct aaaacaaccg cttgtctcca acatatttcg tctttcctgc tttttcttgc
     2281 gttagctcaa atttaatttt attcattgca gtaaaataag cgaaacattc tcttcactcg
     2341 aacattctat gttaaataaa tggtttttaa ctaaaaatgc ttttcttgcc gtcaagcctt
     2401 ttagtgcatt aaaagatgct ctcaatgcag gttatggtaa acaacattta atcagagata
     2461 ttatttcagg cttaaccgtt ggcgttattg ctattccgtt atctatggcg ttggcgattg
     2521 ccagcggtgt gccaccacag cacggtttat atacggcgat tgttgccggg attgtgattg
     2581 ccctaacagg cggttcaaga tttaatattt caggcccaac agccgctttt gtggtgattc
     2641 tataccccgt cacgcagcag tttggcttaa gtggattact catggcaaca atgctttccg
     2701 gaggaatttt agtattgatg gcgttactcc gattaggacg cttaattgaa tacattcctc
     2761 tacctgtcac actgggtttt acctgtggca tcggtattgt gatcgccacc ttgcaaatca
     2821 aagattttct gggcttaagc attgaaaaaa tgcctgaaca ctatcttggc aagctagagg
     2881 ctattttttc agcattgcca accataaatt gggctgacac cttagtgggt gtcgtaacat
     2941 tgttggtttt aactcgttgg cacaagctac ggttgcctat tcccgggcat ttacccgccg
     3001 tctttatcgg cacgctgtta tcattactgc tgattcattt cggacaaaac gttgccacta
     3061 tcggctcagc attccactac acgctctctg acggcaccac tgggtatggt atcccaagcg
     3121 tattacctga atttgtgtta ccttggaatc tcccgaatgc agaggggaat cggatagatt
     3181 ggaacttaac caccattcaa gccttattac cggctgcctt ttcaatggca atgcttgggg
     3241 ctatcgaatc gttattatgt gcggtagtgt gcgataatat gacagatacc aagcaccact
     3301 ctaacaacga actattagcc caaggcttag gtaatattgc ctcgccattt ttagggggaa
     3361 ttaccgccac agcagcgatt gcgagatcgg ctgccaatgt tcgttccggg gcagtttccc
     3421 ccatttctag tgtggttcac gccttgttgg ttttatttgc cctactcttt ttggctaaag
     3481 cactttccta tttgcctctt tcctcaatgg ctgcactatt attggtagta gcttggaata
     3541 tggcagatat tccacaaatc attcaactta cccgccgttc aggtaaaaat gaaattgcgg
     3601 ttttactgac ttgcattacc ctcacggtat tatttgatat ggtaattgcc attacggtag
     3661 gggtgttact ggcaagcctg ctatttatcc gtactattgc agaaatgact aaatcctttg
     3721 aaatggctca cccaaccgat ttgaacgatg tgttggttta tcggatcagc ggtccgttat
     3781 tttttgctgc cgccgataat ctctttgccg atctgcacaa taaaaccgta cataccgatc
     3841 accaaattaa acatattgtg ctgcaatgcg atgccgttac agtattagat gctggtggca
     3901 ttcacgccct aacccgcttt gtacagcata tgttgccaca tcaacaactt catctctgta
     3961 atgtgcaatt tcagccgatg agaatgctag tccgctcaca aaaaacggta aacgaaatcc
     4021 cgcaaattca attcagtagc gatcttgaat ctgccttcga caaaatcaga caggctaact
     4081 aggaataact ccggatataa aacaagcggt catattttcc aactttttgc aaattgcaac
     4141 attttccgaa aatatgaccg cttgtgttga acgttagcct ttagccaaaa tctcttttaa
     4201 gaagcgtgcg gtgtgagaac gtttgtcttt tgccacttct tccggtgtgc cggtagcaat
     4261 aatttcaccg ccgccactgc caccttcagg gccaagatcg acaatccagt ctgcggtttt
     4321 aatcacatct aaattatgtt cgatcaccac aatcgtattg ccttgatcac gcaggcgatg
     4381 tagcacgccg agtaactgtt taatatcggc aaaatgcaag ccggtggtcg gttcatctaa
     4441 aatatagagc gttttgccgg tgtctcgttt ggaaagctcg gtcgccaatt tcacccgttg
     4501 ggcttcaccg cctgagagcg tagtagaaga ttgccctaaa cggatataag ataaccccac
     4561 gtccatcaag gtttgcaact tgcgggcaat catcggcata ggggcaaaaa attctctcgc
     4621 ctcttccacc gtcatctcta acacttggtg aatagttttg cctttatagc gaatttccaa
     4681 ggtttcacgg ttatagcgtt tgcctttaca gtgatcgcaa ggcacataca catcaggcaa
     4741 gaagcgcatt tcaactttaa tcacgccgtc accttgacag gcttcgcaac gtccgccccg
     4801 cacattaaag ctaaaccgcc ctacgttata ccctctggct cgagcttctt gcgtgccggc
     4861 aaaaatctca cgaattggcg taaataatcc ggtgtaagtt gccggatttg agcgaggagt
     4921 tctcccaatc gggctttggt caatatcaat taccttgtca aaatgcgata agccgtcaat
     4981 cgattcataa ggagcaacat cgctgttttc cgctcggttt aacgcattct gtgccagagg
     5041 gaatagtgtg tcattaacta aagttgattt gcccgaacct gatacacccg tgatacaagt
     5101 aaataaacca accggaatct ctaatttcac ttttttcaag ttgttaccac ttgctcccga
     5161 taaggtgagc aatttagttg gctcataagg cacacgctga gccggaatct caattttttg
     5221 cttgcctgag aggaattgtc cggtaataga ttcctcaatt tgcataattt cagctgccgt
     5281 accttgtgcg ataacttgcc caccgtgtac accggcaccc gggcctatat ccacgatatg
     5341 atctgcggct cggatcgcat cttcatcgtg ttcaaccaca atcacggtat tgcctaaatt
     5401 gcgtaaatgc accaaagtat tcagtaggcg ttcattgtct cgttggtgca agccgatgga
     5461 aggctcatcc agcacataca ttacccctac taaacccgca ccaatttggc tggcaaggcg
     5521 aatccgctga gcctcgccac ctgaaagggt ttctgccgag cgggaaagag aaagataatt
     5581 caagccgaca ttcactaaaa actgtagccg ttcacgaatt tctttgagga ttttctcagc
     5641 aattttttct ttctgaccgg ctaatttcag ctcttcaaaa aaggttaatg cctcgccgat
     5701 acttttttcc gaaaccatcg gcaaattggt tttatctaag aatacataac gggcttcacg
     5761 gcgtaaccgt gagccttcgc aatccataca aggacgatta ttaatatact tcgccaactc
     5821 ttcacgcacc gagtttgatt cggtttcttt atagcggcga gccatattat tcagcacccc
     5881 ttcaaaagcg tgtttacgtt tgaccttatc gcctcggtca ttgacataaa caaactcaat
     5941 ctcttcttta gtgccgttta aaataatgtt ttgatatttt ttcggtagct gcccgaatgg
     6001 ggtttctaaa tcaaagccat aatgctcggc aacggctttt aataagccaa aatagtagaa
     6061 actgcggcga tcccagcctt tgatcgcacc ggcggctaat gaaacctctt cattttgcac
     6121 tacttttttg gcatcaaaaa actgctcaac gcccaaacca tcacaagtcg ggcaagcacc
     6181 tgccgggttg ttaaacgaga aaaggcgtgg ttctaattcg tgtaaagagt aaccacaatg
     6241 cggacaagca aagctggacg aaaacacaat ttcttcggca tttgggtcgt ccatatctgc
     6301 aataattgcg gtagagccgg ataaatctaa cgctgtttca aaagattccg ccaaacgggt
     6361 ggctagatca gcccttactt taaagcgatc caccaccact tcaatggtgt gttttttctg
     6421 taattctaat gccggtgggt cggataaatc gcaaatttca ccgtcaattc tagcccgcaa
     6481 atagccacta gcggtcaaat tttccaataa ttttacgtgt tcgcctttac gctctttcac
     6541 cacaggggca agtagcatca accgttttcc ttccggttct tccaatactc gatccaccat
     6601 ctgcgaaata gtttgagcag ccaatggcac atcgtggtca gggcaacgag gctcgcccac
     6661 tcgagcaaac aataaacgta aatagtcgtg aatttccgtt accgttccta cggtcgaacg
     6721 tgggttgtga gaggttgatt tttgctcaat cgaaatcgca ggggaaagcc cttcaatatg
     6781 atccacatca ggcttttcca ttaaggagag aaactggcgg gcgtatgcag acagtgattc
     6841 tacataacgg cgttgtcctt ccgcatagag cgtatcaaac gccagagacg atttgcccga
     6901 gccggaaagc ccggtaatta caatgaattt atctctcggc aaggttaaat tgatgttttt
     6961 taagttgtgt gttcttgctc cacgaatatc gatatgttgc atatttttaa tgtccagtgc
     7021 tattttctca attttcgatc attatcgcat attttaataa aactgtacaa aatatcagtt
     7081 ttttggtgtt catcttttgg attttcaggt agaatactta gcaaatttta gtttaattta
     7141 tcaaacagag gattttatgg ctggtatcaa taaagtaatt attgtcggta atttaggtaa
     7201 cgaccctgaa atgcgtacaa tgccaaatgg cgaagcggtt gcaaatatta gtgtggcaac
     7261 ctcagaaagc tggacggata aaaacaccgg tgcacgccgt gaagtaaccg agtggcatcg
     7321 tattgtattc taccgccgtc aagcagaagt atgcgggcaa tatttacgta aaggctctca
     7381 agtttacgta gaaggacgtt taaaaacccg taaatggcaa gaccaaaacg ggcaagatcg
     7441 ttacaccacc gaaattcaag gcgatgtgct acaaatgctc ggcagccgtc aaggtaatga
     7501 tatgggcggt cagcaaggcg gttggggaaa ttctgctcct gcgggtaata gctacaatca
     7561 aggcaacagc aattatggtt acaaccaaac ccaaagtgct gcaccgcaat ctaaaccggc
     7621 accacagcct gagccggcaa tgaacaattt tgatgatgat attccgttct aatcaaagta
     7681 ttgacttaag tagctcatgg gttccataca ccgcatttcg atgaaataaa aagctactca
     7741 tataaagcgc ccctacctta ctcaaaataa taggg
//
LOCUS       DANLXB010000123         7669 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLXB010000123 DANLXB010000000
VERSION     DANLXB010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7669
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            132..1784
                     /locus_tag="PXD41_001828"
     CDS             132..1784
                     /locus_tag="PXD41_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL6289342.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            1837..2771
                     /locus_tag="PXD41_001829"
                     /pseudo
     CDS             1837..2771
                     /locus_tag="PXD41_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(2793..4874)
                     /gene="recG"
                     /locus_tag="PXD41_001830"
     CDS             complement(2793..4874)
                     /gene="recG"
                     /locus_tag="PXD41_001830"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL6289343.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(4878..5306)
                     /locus_tag="PXD41_001831"
     CDS             complement(4878..5306)
                     /locus_tag="PXD41_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6289344.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(5306..5593)
                     /locus_tag="PXD41_001832"
     CDS             complement(5306..5593)
                     /locus_tag="PXD41_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6289345.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            5757..7640
                     /gene="htpG"
                     /locus_tag="PXD41_001833"
     CDS             5757..7640
                     /gene="htpG"
                     /locus_tag="PXD41_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL6289346.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
BASE COUNT         2078 a         1692 c         1824 g         2075 t
ORIGIN      
        1 gtacgctatt ttttatttct gacaaatctt tttatttgat agctcgatca caaaaaaaga
       61 aatatctcct tttaaataaa aggactttgg gctaatctaa acagagtttt taaattacat
      121 aggagtaaaa aatgactatt ttccaagttg cacaaaattg gttagcccaa gacccggatg
      181 cagagacccg tgcggaatta gagcagttaa ttcaagcggc agaatcggac gagaaagcaa
      241 aagcagaatt aacagcccgt tttgacggac gtttacagtt tggtacggct ggtttgcgtg
      301 gtcgcttaca agcgggttca atgggtatga accgtgtttt ggtggcacaa gctgccagcg
      361 gtttagctgg gtttattaaa ggttatgata aagagccgtc aattgttatt ggttatgacg
      421 gtcgtaaaaa ttccgatgtg tttgcccgtg acaccgctga aattatggca gcggcaggca
      481 ttaaaacgta cctgcttcct cgcaaattgc caacaccagt gcttgcctat gcgattcaat
      541 attttgatac cacagccggt gtgatggtaa ctgccagcca caacccaccg gaagataacg
      601 gctataaagt ttatttaggt aaagccaacg gtggcggaca aattgtttcg ccggcagata
      661 aagaaattgc tgctctgatt gataaagtag cagcaggcga tattcgtgat ttacctcgta
      721 gccaagattt cacggtgtta gacgatgaag tggtaaatgc ttatattgag aaaaccgcct
      781 cactagccaa acggccaaaa gccgaaataa actacgttta cactgcaatg cacggtgtgg
      841 gctatgaagt gttaagcaaa acattagaaa aagccggctt accgcaaccg tatttagtta
      901 gtgagcagat tcagccggac ggttcgttcc caacggttaa tttcccgaac ccggaagaga
      961 aaggggcgtt agatttagcg attaaattgg cgaaagagaa aaatgccgaa tttattatcg
     1021 ccaacgaccc ggatgctgac cgtttagcgg tagccgtgcc tgatgctcaa ggcaactgga
     1081 aaccactgca tggcaatgtg atcggctgtt tcttaggctg gtatttagcc aaacaattcc
     1141 acgcacaagg taaacaaggc gtgttggctt gctcgttagt atcctctccg gcgttagctg
     1201 aaattgcgaa aaaatatggt ttaagctcgg aagaaacctt aaccggcttt aaatatatcg
     1261 gaaaagttga aaacctatta tttggctttg aagaagcctt aggttatttg gttgacccag
     1321 acaaagtgcg tgataaagac ggcatttccg ctgccattat gttcttagat ttagtgtgca
     1381 gcctcaaaca agaaggtaaa acccttgcgg attacaccac cgagtttgta caagagttcg
     1441 gggcttatgt aagcggtcaa atttcgatca gagtttgtga tttagccgaa atcggcaaat
     1501 taatgacggc gttacgcaac aatcctccaa gcgaaattgg tggctttaaa gtggctgagt
     1561 ttattgacca taccaaaacc acacgccaaa atgacatttt agtgtttgtg ttggaaaatg
     1621 gcagccgttt gattgctcgc ccttcaggta ctgagccgaa aattaaattc tatttagatg
     1681 ctcgtggcac agacgctgaa aacgcagagc aagtgctggc tcagtttgac gaaagtgtgc
     1741 gttcgctgct tcgccaagaa gaatacggca aacaagattg ctaatggcat taattgaggg
     1801 ggagcttagg ctctcccttt tttaaaggag acaataatgg ctcaaaaaat tattttagat
     1861 tgtgatccgg ggcatgacga tgcgattgcg atgatgctcg cttgggggaa tccgaatatt
     1921 gatttgttgg cagtgactac ggtggtaggt aatcaaacct tagaaaaagt atcgcgtaat
     1981 gcgttggcgg ttgcggaaat tgctcatatt tgcaacgttc cttttgccaa aggttgtgcc
     2041 agaccgctgg tgcgtgaagt ggaaaatgcc ccggatattc acggtgattc gggaatggat
     2101 gggcctgtac tccctgaatc tacccgacaa tttgagaaaa aacacgccgc tcaattaatt
     2161 attgatttga taatgtcgca cccggagaaa agcattacct tagtgccgac cggtgggcaa
     2221 taaccaatat tgctctagct gcccgccttg agccccgtat tattgaaaga gtgaaagaag
     2281 tggtgctgat gggcggaggt tatcacaccg gcaactggag tgcggtggca gaatttaata
     2341 ttaaaattga cccggaagct gctcatattg tgtttaatgc cggttggaag gtgacgatgg
     2401 tcggcttaga cttaactcac caagcacttg cgacccccga tgtggttgaa cgctttaagg
     2461 cattaaacag caaatcgggg cagtttgtgg tggaattgct ggcgttcttc gccaaaatgt
     2521 ataaacaggc tcaaggcttt gatgctccac cggttcacga tgcctgtgcg gtggcgtatg
     2581 tgattgaccc aagcctgatt gaagttcagc aagtgccggt caatattgag ctaacaggca
     2641 cgcatacact gggtatgacg gtggcggatt tccgctaccc gccaaaacag tgtaatactt
     2701 gggtagcaaa aaaattagac aaatcccgct tttgggattt ggtaattgaa tcggtgaaaa
     2761 acctgccgta atctaaataa cccgcttgcc ggttaagcgt tggtatattc cgccttgttg
     2821 tctaaccaac gcttaattaa cgcctctgca agcggttgat tttcgctaat aatttgcttg
     2881 gcgtaacgtt gcaccagcgg aatcattttg cggtctcgca ttaaatccgc caccttaaat
     2941 tctgccattc cggtctgttt tgtgccgaga atttcgcctg tgcctcgaat ctccaaatct
     3001 ttttcggcaa tgtagaaacc gtcttggcta tcacgcatca cttgtaaccg cttgctggaa
     3061 attttcccga gcggcggttt gtacattaag acgcaatgcg aggcggttgc ccctcgccca
     3121 acacgtccac gcaactggtg gagttgagcc agcccgagtc gttcggaatt ttcgataatc
     3181 attaggctag cattcggcac gtccactccc acttcaatta cggtggtcgc aaccagcaaa
     3241 tctaaattcg ctgccttaaa ttccgccata atcgcttgtt tttcctgtgg tttcagccgt
     3301 ccgtgtacta acccgatgcg taaatccggc aaggctcgct gtaaatcttc ggcaatcgct
     3361 gccgcggctt gagcctccaa cacttcgctt tcatcaatca gggtgcagac ccaataggct
     3421 tggcggtgtt cttgcttaca gacttggtac acccgttgga cgatttctgc tcgccgatct
     3481 tcagaaatca ccacagtcgt gattggcgtt ctacccggtg gcagttcgtc aatgattgag
     3541 gtgtcgaggt cagcatagac cgtcattgcc agcgttctcg gaatgggggt cgccgtcata
     3601 atgagctgat gcggatagtt attttctttc gctccttttt cccgcaaggt cagccgttgg
     3661 tgtacgccaa aacggtgttg ttcatcaata atcaccaacg ctaaatggtg aaattccaca
     3721 ttgtcttgga acagggcgtg agtgccgata atcatctgca catcaccgtt tttgattgcc
     3781 tcaagttgtg cggttctcgc cttgcctttc actttaccgg caagccagcc aacctcaatc
     3841 ccaaagggat taagccagtt ggcaaaatta ttggcgtgct gttcggcaag aatttcggtc
     3901 ggtgccatta atgccacctg cttgccgtta tcaatcgcta atagtgctgc caaggcggct
     3961 actaaggttt tacctgaacc aacatcgcct tgtaccagtc gcatcatcgg gtgtggtttg
     4021 gcaagatctt gctcaatatc tgcggttact cggctttgtg cgtgagtagg cttaaaaggc
     4081 aaactgtcga gaaaacgctg ttttatatcg gtttggtaag taagtgcctc tgcatattgc
     4141 tgttttaccc ctaaacggag ttgctgcatc gctaaattgt gtgccagcag ttcttcaaaa
     4201 atcagccgtt tttgagcagg gtggtcacct ttttccaaga cttcggcaga aatcgtcggc
     4261 ggtgggcggt gcaataactg caacgcttct tttaggctgt atttgtgcgg attgtattca
     4321 tcaggcaaca gctcggcgac tttcactttc tctaataaag cgagggcttg ctcggttaat
     4381 ttccgcagcg aggcttgttt taacccctca gtggtggagt aaatcggggt cagggtttca
     4441 gccagtacaa gcggttgatt atcccgaata atttgatatt cagggtggtg aatttccgcc
     4501 ataaatcgcc cacgcttaat ttccccaaag gcttttaccc gaacgccggt ggcaaggcta
     4561 tttttcattc cagcattgaa attgaagaat ttaagcataa ttttgctggt gctgtcggag
     4621 agtgtaaccg ataaaatcgg gcgtttacca aactggactt cggtaagttg tacatagcct
     4681 tcaatggtgg caaagctttc cgggcgaaca tcagcaatcg gggtaatacg ggtgcgatct
     4741 tcataccgca ttggcagatg aaacagtaaa tcctgcacat tattaatgcc gattcgactt
     4801 aacttttcgg aaattgccgc tcctacgccg gaaagggcgg ttaatggcac gccgtctaat
     4861 aattgttcac tcattattta tgcggtttca aatgggttaa ataaacgcac atcacaacgg
     4921 ataaaatctt tggtgttgcg ggtgactaaa atcagattgt ggtatttggc ggttgccgca
     4981 atataagcat catttaaatc cattttattg ggaatatggt actctgatgc caatagagca
     5041 atgtcgttat tcaccacaaa cgcttttgtt tgataagcct ttaatacatt attttcaaac
     5101 caatcattta atcggtctga ttgttctttg tctttgcggg ctttcagcaa aatacctgtt
     5161 ttgatttcag ataacgtaat acagctgata ttggtctggc taggattaac ccctctcagc
     5221 cactggcgaa cattgacatc catcttgtca tttcttaact tataaagctc ggaaactata
     5281 ttggtatcaa aaaggtagcg atacattact catctccaaa atcaacaggt cttggtttat
     5341 tgcttttgcg gatttcaacc aatgtttgtt caaactcttg ccaaaattca tcgctcacat
     5401 cctcattttc ggaagaggcg aatagctctt caaagcttgg ctcgctaggc tttttctgct
     5461 gataatccat ataactagac accacattga cgattttgcc ccatttggta ataaaaaccg
     5521 gctctttttc tgccattttt aacactttgc tggcattttg attaaattct ctggaagtaa
     5581 tggttattgc catatcgctc tccaaaatgt agtaaaaaga tgagtgtatt ttattaaatg
     5641 tagtaatatc tttcaattaa ttcgctattt ggcaacagat attttgcaaa aaatcttgaa
     5701 aatctgacca cttgccccat ctattccctg ttttttaatg aataaaggaa tacacaatgg
     5761 caaataatca agaaacccgt ggcttccagt cggaagtgaa acagttattg caactgatga
     5821 tccactcgct ttactccaac aaagaaattt tcctgcgtga gcttatttcc aacgcctctg
     5881 acgccgccga taaattgcgg tttaaagccc tttccgagcc ggctttgtat gaaggtgatg
     5941 gcgaactgcg tgtgcgtgtc tctgttgatg aaacactcgg tacgattacg attgccgata
     6001 acggtatcgg tatgacccgt gagcaggtga tcgaccatct cggtacgatt gcaaaatctg
     6061 gtaccaaaga atttttgaac gcactcggca ctgatcaagc caaagacagc cagcttatcg
     6121 ggcagttcgg cgtgggcttt tactcttctt tcatcgtggc ggataaagtg acagtcaaaa
     6181 cccgtgccgc cggagtgcct gccgagcaag gcgtgatttg ggaatctgcc ggtgagggcg
     6241 attacaccgt tgccgatctg gagaaaaaag agcgtggcac ggaaatcatt cttcacttgc
     6301 gtgaggacga aaaagagttt ttaaacgaat ggcgtttgcg tgagattatc ggcaaatact
     6361 ccgaccatat cggcctggcg gtggaaattc agaccaatga atacgatgac gagggcaaag
     6421 caagcggtca aaaatgggaa aaaattaaca aagctcaagc gctttggaca cgctcaaaaa
     6481 atgagattag tgacgaggag tacaccgaat tttacaaaca cctcagccat gattttgccg
     6541 acccgctgat ttggtcgcac aataaagtcg aaggtaagca agaatacacc agcttgctgt
     6601 atgtgccgag caaagccccg tgggatctgt tccaacgcga gcaaaaacac ggcttgaaac
     6661 tctacgttca gcgtgtattt attatggacg atgcggaagt ctttatgccg aactacttgc
     6721 gttttatgcg tggcttgctc gacaccaacg acctgccgct caacgtcagc cgtgaaattc
     6781 tgcaagagaa taaagttacc caatcgctcc gttctgcctt aaccaagcgt gcgttacaac
     6841 tgctggaaaa attggcgaaa gacgatgccg aaaaatatgc ccaattctgg caagcgttcg
     6901 gcgtggtgct taaagagggc gtgggcgaag actttgccaa caaacaacag gttgcaggct
     6961 tactccgttt tgcctccacc cagcgtgatg acagcgaaca agcggtcagt tttgccgatt
     7021 atattgcaag aatgaaagag gggcagaaag cgatctactt cttaaccgca gacagctacc
     7081 aagcggctaa aaacagcccg cacttagagc tgttccacaa aaaaggcatt gaggtgctac
     7141 tgctttctga ccgcattgat gaatggttgg ttagccacct caccgagttt gacggcaaac
     7201 cgctacaaag cattaccaag tcggacttag acttaggcga gcttgccgac aagcaggaag
     7261 aagagagcca aaaagcccaa caggcggagt ttggttcgtt cttagaacgg gcgaaaggct
     7321 actttggtga acgggtcaaa aacgtggtgc tgactcaccg cttaaccgac acaccggcag
     7381 tggtttccac tgacagcgat gaaatgacca cccaaatggc aaaactgttt gcagcaatgg
     7441 ggcaacaagc accagaagtg aaatatactt ttgagctgaa cccagatcac ccaatggtga
     7501 aaaaagtagc tgatcttgcc gatgaagccg agttcgccga ttggattgaa ctgctgtttg
     7561 aacaagctct gcttgctgaa cgaggcacgt tggaaaaccc gacagccttt attaaacggg
     7621 taaataaatt gttgggctag ccattactaa aaacggaaat ctaggtttc
//
LOCUS       DANLXB010000124         7621 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLXB010000124 DANLXB010000000
VERSION     DANLXB010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7621
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            1..630
                     /locus_tag="PXD41_001834"
     CDS             1..630
                     /locus_tag="PXD41_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL6289347.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            778..1407
                     /locus_tag="PXD41_001835"
     CDS             778..1407
                     /locus_tag="PXD41_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6289348.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            1473..1988
                     /locus_tag="PXD41_001836"
     CDS             1473..1988
                     /locus_tag="PXD41_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL6289349.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(2036..2966)
                     /locus_tag="PXD41_001837"
                     /pseudo
     CDS             complement(2036..2966)
                     /locus_tag="PXD41_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3025..3675)
                     /locus_tag="PXD41_001838"
     CDS             complement(3025..3675)
                     /locus_tag="PXD41_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL6289350.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYLGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            4004..5362
                     /gene="mnmE"
                     /locus_tag="PXD41_001839"
     CDS             4004..5362
                     /gene="mnmE"
                     /locus_tag="PXD41_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL6289351.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            5363..6628
                     /gene="tilS"
                     /locus_tag="PXD41_001840"
     CDS             5363..6628
                     /gene="tilS"
                     /locus_tag="PXD41_001840"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL6289352.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(6618..7511)
                     /gene="xerD"
                     /locus_tag="PXD41_001841"
     CDS             complement(6618..7511)
                     /gene="xerD"
                     /locus_tag="PXD41_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL6289353.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         2358 a         1738 c         1628 g         1897 t
ORIGIN      
        1 atggctgttt cagctacttc atttgcacaa accactcaac ctactgcggc tgaacaaatg
       61 aacgcagtta aagcctctgt tgccgaaaaa gcaactgtgg ctaaagaagc aacaaaagag
      121 aaagcagcgg agttaaaagc cggttctgcg gaaaaaatgg cgatagcaaa agccaaaacc
      181 gaatcattta aagattccgc taaaaacaaa atggacgcag taaaagccac cacagcagaa
      241 aaaacggacg tgattaaagc gaaagccgca tctgcaagcg acacaatgaa agtgaaagct
      301 caggaagcaa aagccgccac cgcagagaaa gctgcaactg ctcatgaaac cttaaattca
      361 gccaaaaccg caaccgctga aaaagcggcc tcaatgaaag cagctgcaac agaaaaaatg
      421 tcagcagtga aaaaatcaca aaaagtgaat atcaacactg ccaacgaaga gcaattacaa
      481 tcgcttaccg gcattggtga agcaaaagcc aaagcgattg tagaataccg caaaaaacac
      541 ggtaaaatca aaaatgcagc agaactggcg aacattcccg gcattggcga tgcaaccatt
      601 gagaaagttg ctccatattt aactttctaa tgttctgcaa gcggttattt tgttgcaaaa
      661 ttttgcagaa aaataaccgc ttgttcattt cacaccttgt attcttaaat ttcaccccca
      721 ttaagtgaat cgtatttctt tcaatacagt attcaataaa ctcaaaagga acagaaaatg
      781 gcattagatt tcaattcagt tggattagat tcagtagaag caaaaggcgg ttacggcatc
      841 ggtttacaaa ttggtcagca acttttaggc agcggaatgg acgtaaacgc agaaaccgtt
      901 gcccgtggta tttatgatgt gttaaacaac aatgagccgg caatcgacat caatgaagtg
      961 accgctgcat tacaagaatt aggtcagcgt gcggaagcgg ctcaagcaga agcattcaaa
     1021 gcgattgatg ccgaaaacaa agcgttcttg gaagagaata aaaaagcaaa cggtgtaatc
     1081 gttaccgaca gcggtttaca atatgaaatt ttaaccgaag gcacaggcga aaaaccgact
     1141 gcgacttcaa ccgtgcgtgt tcactacacc ggttcattaa ttgacggcac cgtgtttgac
     1201 agctcggtaa aacgcggtca gccggcagaa ttcccggtaa acggagtaat tcgtggttgg
     1261 acagaagcat tgcaattaat gccggttggc tcaaaatggc gtttaaccat tccacaagaa
     1321 ttagcctacg gcgaacgtgg tgcagaagca tcaattccac catttgcgac cttagtgttt
     1381 gaagtggaat tgcttgatat tctctaatca aactcaaata aaaaacctgt ggaggcattt
     1441 cacaggtttt tgctatttaa gataactata ttatgcagaa aaaatcactc atatctcgct
     1501 tacttaaaaa tattttcctc tacggcagcc tgtttatcat tattagcctg gtggttgatt
     1561 ggtatcgctc gccctccgct ccggcacaat ttgagcaaac cgtgcattat gatattcaac
     1621 accagccgaa agtaatcgcc caattaagcc acgagaagcc gatgctactc tatttttggg
     1681 gaagttggtg ccactattgc caagtggttt cgccaaatat ccaacaatta gcgaatgacg
     1741 gcacggaagt tttaggtgtt gccctgaaat ccggcgatga aaatgacgta caagcctatc
     1801 tcaatgaaaa tggctacact ttcgctactt tgaatgaccc aagcggtgat ttctctcgag
     1861 gttggaacat tcaagccacc ccaaccatct tgattatcaa agacggtaaa atcgcccacc
     1921 acaccaccgg ctacactagc tatttgagct taaaattcag actatggctg gcagacgtgt
     1981 tgtattaaac gattcctttc atttgcaaaa aaatccacta aatccgaccg cttgtttaca
     2041 ccaaaaagac aagcggtact aaattcattg tcatcattgt ggtgatcgat aaaatcagcc
     2101 tcgatgagcc aaaaataaag cctcggtttt tgccgttgtc gaatttcacc agtaaatttg
     2161 ccattgctgt gagggcgtac acttccacca ccgtaaaaat cacggtgtaa atataggcag
     2221 cggtcagagt tgcgactttt accgcaataa accaaggggc aataatcgcc accgctaata
     2281 acggcgaaat ccaaattaat tgctgtttgg tgaggttgat tttacgagaa aaagtcgatt
     2341 gcaaactgac ggttaaaaca ccgttgatga ataacgcaat cggcgaatgc tccggtgcgt
     2401 gcaggacatt gtcgaataaa tacggaaaaa tcactcagcg gcacaaatag cattaagtga
     2461 gcgaacaaaa actctttgtt gatgatttcc ttaatttgtg cgaaacgaaa tttcacgccg
     2521 ccattcacgc cttccaccga ataaaacggc ttgaccataa acgcaaacaa gccggcttcc
     2581 aaaataaagc agatccaaat cagcgtttca atcatctcaa acctaataaa cggaataata
     2641 atcagcgggg cgagcattga agacatactg gtgactttta gatatttgcc ttgtaaacgg
     2701 gttttagcag catattcatc gccggcaatc gccagtaaac aggctctggc attagtgccg
     2761 aataagcaac tccccaaccc aaagcaagtg gttgccaaca ataaaatgag gtaattatcc
     2821 gctgctaaaa acagcatata ggcaaccaca tctaataaac agcccaataa catcattttt
     2881 gccaagccgt agcgatcccc ccaaatgccg gctaaaattg ccaatgcctg attacaaaac
     2941 aacagcaatg aaaggaaaaa agcgatttgg gcgttatcta gccctttctc ttttaaataa
     3001 aagaaaaggg gctgtcctag ataactaacc taaactaccc ttaaccaatt gttttaaaaa
     3061 ggatatttga gattttaagt cactgtgatt aaaacgccat tcgcattctt tcaaatacag
     3121 ctcaaaatgc actttgggaa tgccgttaaa cttacgcaaa tggcgttttg cttggctccc
     3181 aaaattctca attccattaa tgtgattttg attttcagcg aagtgtgtgc tgtgattaat
     3241 gcgaaaatgg ttaaattcac tcacatcaag cacatcataa cttcgataga aatcggtgta
     3301 aacaatacta tcgggtttca ccttttcccg aataatcggc aaaagtgtgg caaattgcgt
     3361 gtttggtact accacggtat aaacctttcc gtcccgcttt aaaagcccga acacggcggt
     3421 tttgcctgct gcaccacgtc cacgtttacc tttacgatga ccgcctaaat aactctcatc
     3481 aacctcaatt tctccctcaa acatttccaa atgagggcta tgttgataga taagcaaccg
     3541 caagcgatgg aagtaatacg ccgccgtgtt tttgtttaca ttgaccaact cagatgctgt
     3601 tcgggctgtt acccctgcaa caaactgctc aatgagtttg ttttgtttgt actgacttag
     3661 acgacttttt ctcatttggg tatcttaacc taaatggagt ttttagtcgt tatctaggac
     3721 agccccaaag aaaaacacgc tttgcattga aaaaaaggcg gtggtggaaa taaaacggcg
     3781 taggagtaat agtttttcta aagacattca gaatggttga attggttaaa taaagagcgg
     3841 ttattctacc ttttaagtca accccaatca atcggctttt gttttacctt tggcgtgggt
     3901 ttcggtatga taagcgatat gtagtggcgg gtcctgtgcc cgcctaaata ccaatgataa
     3961 cttgcgggcg agcacaggac tcgcccctac gataaacaag aaaatgaaag acaccattgt
     4021 tgctcaagca acaccgattg gcagaggcgg tgtggggatt ctgcgagttt ccggtccgct
     4081 tgccgaaacc gttgctcaag ccgtattagg caaaacattg ccaccccgta tcgcaaatta
     4141 tttgccgttt aaagacgaag atggcactgt gttggatcaa ggcatcgcct tattttttaa
     4201 agctcccaac tcctttaccg gcgaagatgt gcttgaactt caaggacacg gtgggcaggt
     4261 tattttagat ttactgctca aacgcatttt acaagttaag gggctacgca ttgcccgagc
     4321 aggtgaattt tccgaacagg catttttaaa cgataagctc gaccttgccc aagctgaagc
     4381 gattgcggat ttaatcgacg ccaccagcga gcaagccgct cgttcagccc tgaaatcact
     4441 acagggtgaa ttttctaata aaatcaatgc gttagttgat tcagtaattt atttacgcac
     4501 ttatgtggaa gcggcgattg acttccccga tgaggaaatt gactttctgg cagacggtaa
     4561 aatcgaggca aaattaaatg agattatcgc tcaattagac ggtgttcgcc gtgaagcgaa
     4621 acaaggctcg attctgcgtg aaggaatgaa agtagtgatc gccggtcgcc cgaatgcagg
     4681 gaaatcaagc ttgcttaacg ccttagccgg acgagaggcg gcgattgtaa ccaatattgc
     4741 tggcacaacc cgtgatgtgt tgcgtgaaca tattcacatt gacggaatgc cgttgcatat
     4801 tatcgacacc gccggtctcc gtgatgccag tgatgaggtg gaacgtatcg gcattcagcg
     4861 tgcttgggaa gaaatcgccc aagccgacca cgttttatta atgattgaca gcaccgagca
     4921 acaagccgat cagttccgac aagagtgggc ggaatttcta gccaaactgc cggcaaatat
     4981 gcctgtgacc gtaattcgca acaaagtcga tttatccggc gagcaggaag gcttaattca
     5041 ggtggacgat ttcacgatga ttcgcctctc tgcccaaacc aaagtcggcg ttgatttatt
     5101 gcgtgaacac ttgaagaaat caatgggcta ccaaagttct acggaaggcg gattcttggc
     5161 tcgccgccgt catctgcaag cattggaaac cgctgccgag catttagagc gagggcatat
     5221 ccagcttact caattcttag ccggcgaatt gttagcggaa gagttgcgta tggtgcaaaa
     5281 tgccttaagt gaaattaccg gccagttcac ctctgatgac ttattaggca acattttcag
     5341 ctcattttgc atcggtaaat aaatggcact ttttaaccgc tttcaaaccc agtgtgcaac
     5401 gcatttgccg aaccaaaccg cctttttaat cggcttaagc ggtggggtgg attcggtggt
     5461 actactccac ctttttgccc gcacctcatt tcacgttagg gcaatttatg tccaccacgg
     5521 gctaagccca aatgcggacg actgggcagc cttttgcgaa caatattgca agcggttaaa
     5581 tattcccttt attttacaaa aggtcagagt ggatagctca aacggcgttg aaaacggggc
     5641 gagagaagct cgttaccaag ccattcaaca acagcttaag cccaatgaag tgttcgccac
     5701 cgcccaccat ttagatgacc aagccgaaac ttttttgctc gccctcaagc gaggcagtgg
     5761 agtcaaagga ttatcggcga tgcaagcggt cacttttttg caaaatttta ccgtttttcg
     5821 accgctactc acttttacta agtcagattt gatgggttat gccgttcaac atcagctagg
     5881 ttggattgag gacgaaagca atgccgataa ccgttacgac cgtaatttcc ttcgcaatag
     5941 catcttgcca ctactcaatc aacgttggca gcacttcagc caaatggttg cccgttccgc
     6001 tcagcattgt gcagaacagc aagccttgat agaagagcta ttaagcaatg aactcaagtc
     6061 aagaacaggg gaaaaacaac aactcaacat taacggcttt gggcaatttt cacttgccaa
     6121 gcaacagcaa cttagccgcc tttggctgga acaaaacgga gtgagaatgc caagccaagc
     6181 ccagctacaa gcggtcattt ctgaactgat ttttgcaaaa gccgataaaa acccacaggt
     6241 taaagtcggc gaaaatatta tcagacgcta tcaacaagct atttacgtta ccgaagagat
     6301 cgccgacatt ccgccgtttg aggtagtact tcccacagaa accaaagtgg aattacccta
     6361 tcagctcggt actattattc gccaacaaca agagatcatt tgcaaaaaaa acgggaaaaa
     6421 tcaccgcttg caactgcccc aagagctggc tcaatcaact atttctatta aaatcgggca
     6481 actaggcaaa gtaaaatgct acggcaaggc tcaacgggaa gaaatgaaaa agatttggca
     6541 aaatcacggc atacctgttt gggaacgcaa ccgtacaccg ctgatttttt ggcaagacga
     6601 attagttggc ctattaccta tcctctaggg tgaaattgct gatgaagcga tttcaaacgg
     6661 gcttttgcca cttgagtgta aatctgggtg gtcgataaat cactatgccc cagcaacatc
     6721 tgtaccactc gcaaatcagc cccatgattg accaaatggg tcgcaaaggc gtggcgaagc
     6781 acgtgaggcg agagtttatc tgcatcaata cctgcaagca cggcatagtg cttaatccga
     6841 tgccaaaacg tctgccttgt catctgctga cctcgccggc tcggaaatac aacatcagac
     6901 tgctgattat tcagcaaaat agggcgaccg tactggaaaa actcctgtat ccaataattc
     6961 gcctcctcgc ccaatggcac taaccgctct ttatcccctt taccgataat tctcaccacc
     7021 ccttgtttga ggctgatatt atccatcgaa agcgacacca gctccgttac ccgcagaccg
     7081 gtggcataca gcagctccag cattgcttta tcccgtaact ctatcggatc taacgtattc
     7141 ggggcatcta gcaaatccat tacctgatct tcacttaagg atttgggtaa agaagcaccc
     7201 cgtttagggg aagaaagggt taaagtcggg tcatcttggc gataatgctc aaggcataaa
     7261 aaacggaaaa atttccttaa acaactcaac attctggcag agcttgtcgc cttatagcct
     7321 tgctccaaac gctcgccgag aaaaccttgt aagtcgatat gatcgagaga cagaaatgct
     7381 ttaggttcag aaaaataatc ggaaaaacgc tctaagtcag aacgataaga ggcaacggta
     7441 ttttcagaca aaccgtgttc ttgccatagt gtatcgagaa attgttcaat aatagggtca
     7501 agctcagcca tacaagcggg tatattttca ggaaattttg caaattttaa cagaattaaa
     7561 tctataaaaa tacaaaagcg atagaaacga aaaaaccgat tagcttatgc taatcggttt
     7621 a
//
LOCUS       DANLXB010000125         7570 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLXB010000125 DANLXB010000000
VERSION     DANLXB010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7570
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            112..612
                     /locus_tag="PXD41_001842"
     CDS             112..612
                     /locus_tag="PXD41_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6289354.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            900..2294
                     /gene="fumC"
                     /locus_tag="PXD41_001843"
     CDS             900..2294
                     /gene="fumC"
                     /locus_tag="PXD41_001843"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL6289355.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2421..2531
                     /locus_tag="PXD41_001844"
     CDS             2421..2531
                     /locus_tag="PXD41_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL6289356.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2636..3886
                     /gene="lysA"
                     /locus_tag="PXD41_001845"
     CDS             2636..3886
                     /gene="lysA"
                     /locus_tag="PXD41_001845"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL6289357.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3900..4529
                     /locus_tag="PXD41_001846"
     CDS             3900..4529
                     /locus_tag="PXD41_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL6289358.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4600..6045
                     /gene="tldD"
                     /locus_tag="PXD41_001847"
     CDS             4600..6045
                     /gene="tldD"
                     /locus_tag="PXD41_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL6289359.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            6109..6990
                     /gene="prmA"
                     /locus_tag="PXD41_001848"
     CDS             6109..6990
                     /gene="prmA"
                     /locus_tag="PXD41_001848"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL6289360.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7165..7240)
                     /locus_tag="PXD41_001849"
     tRNA            complement(7165..7240)
                     /locus_tag="PXD41_001849"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7205..7207),aa:Trp,seq:cca)
     gene            complement(7306..7382)
                     /locus_tag="PXD41_001850"
     tRNA            complement(7306..7382)
                     /locus_tag="PXD41_001850"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7346..7348),aa:Asp,seq:gtc)
     gene            complement(7393..7508)
                     /gene="rrf"
                     /locus_tag="PXD41_001851"
     rRNA            complement(7393..7508)
                     /gene="rrf"
                     /locus_tag="PXD41_001851"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2265 a         1682 c         1658 g         1965 t
ORIGIN      
        1 tattcaaact tttcgagcca cttcacaaat ctaaaaaatc ctagttgaaa tttaatccat
       61 aagagtattt attattaaat aagtttcatg accttacatc ggagtacata tatgcaaaca
      121 atcaatgaaa ttaaagaaga aatctaccct atatttgagc ctatcattgg aacaattcgg
      181 ctaaaaacct acttttccta ctacgcagtt tttaaggatg gattgatgat tgcattgtat
      241 caaaatggag caacttattt acgtattgcg aaaaaagata ttgaatacat tcgtcagtat
      301 cctaaaacct gtatcttatg cgatgaaaaa attggtatac aaagtagaaa atttcattat
      361 attccgcaag ttctcataga tgatacacca aaatttagct cgctactctt tggaattata
      421 gaggaactcc gaacggagaa gtacaaaata agccaaaagc gagctacaca aatccgaaac
      481 ctaccaaata tgaatttaaa gttagaaaga atgttgaaaa aaatagggat tcattccatt
      541 catgatttta ctcaagaagg gtatatgtca acttttatca aactgattct ccaccgaaga
      601 cttactgttt aagctaaacg gagctttaaa tcaccaatat atttacacct tcacagatca
      661 acaaaaaagg gaactaatgc aagaagcaaa tcaagcgcta tataattcag gcctaagaaa
      721 aagatttaac gccctgtagt taaataatgt gatccaaatc ataaaatata aaaaaaccaa
      781 taaggaattg caattcgcag ttcctttctt tttcttttat atgctagtat caccttatac
      841 ctctaaatta ttagtgccta ctgattttca attaatccaa caatttagga gagcgcatca
      901 tggaattccg tatcgaaaaa gacacaatgg gcgaagtgca agttcctgcc gataaatact
      961 gggcggcgca aaccgagcgt tcacgcaata acttcaaaat cgggccggag gcatcaatgc
     1021 cggcggaaat tatcgaggcg tttggctatc tgaaaaaagc ggctgcctat gctaatcacg
     1081 atttaggcgt actagcggtc gaaaaacggg atttaattgc aaaagcctgt gatgaaattt
     1141 tggcgaacaa actcgatgat caattcccgc tggtgatttg gcaaaccggc tcgggtacgc
     1201 agtcaaatat gaacgtgaat gaagtcgtgg caaaccgtgc acacgtgtta aacggcggca
     1261 agctgggtga aaaatcgatt attcacccga atgatgatgt gaataaatcc caatcttcta
     1321 acgacaccta cccaactgca atgcacatcg ctgcttacaa aaaagtggtg gaacacaccc
     1381 taccttgtgt gaaacgtctg caaaaaacct tagcggaaaa agccgaagcc tttaaagatg
     1441 tggtcaaaat agggcgtact cacttaatgg atgctacccc gctcacgctc ggtcaagagt
     1501 tctctgccta tgcagcacag ttagcattcg gcatcaaagc attggaaaac accctgccac
     1561 acctgcgtga gctggcactc ggcggcacag cagtcggcac cggcttgaat accccgcaag
     1621 gttacgatgt gaaagtggcg gaatacattg cgaaattcac cggtttaccg ttcgttaccg
     1681 cccaaaacaa atttgaggca ttagcgactc acgatgcgat tgtcgaaacc cacggtgcat
     1741 taaaacagct tgcggtgtcg ctctacaaaa ttgccaacga tgtccgttta ttagcctccg
     1801 gtcctcgttc aggcattggc gaaattctga ttccggaaaa cgagccgggt tcatcaatta
     1861 tgccgggtaa agtaaaccca acccaatgcg aagcaatgac aatggtatgt gcccaagtat
     1921 taggcaacga tgtaaccatc tcttttgccg gcacgcaagg gcatttccaa ctgaatgtct
     1981 ataaaccggt gatggcgtac aacttcctgc aatcggctca actgctaggc gatgcgtgcg
     2041 tgtcgtttga cgaacactgt gcagtcggca ttgaaccgaa ctaccctcgc attaaacaac
     2101 agctcgacca atcgctgatg ttagtgaccg cattaaatac tcacattggt tatgaaaatg
     2161 cagcgaaaat cgccaaaact gcccacaaaa acggcacaac actgaaagaa gaggcgatta
     2221 acttaggctt agtcacggca gaacagttcg atgaatgggt tcgtccggaa gatatggttg
     2281 gcagcttgaa ataagcccaa cccttctctt gtaatctgat ttacacctca atctaccggt
     2341 aagattgagg tgtaattttt tatagcgagg gtactgattt tgttttagaa tgaagcatca
     2401 ttttttaagc ggaaaaacct atgaaaaaac tcattttaat cgcattagtt actactttag
     2461 gcttaagtgc ttgtggggtc aaaggcccac tctacttccc tgagcaagcc cctaaacatg
     2521 aacaaaaata agcattgcaa gcggtctgtt ttggctaaaa ttttgcaaat ttttgtgaaa
     2581 aaatgaccgc ttgttgcctc ttttctttca aaatcccaaa cacaacggac tttcaatgaa
     2641 ccattttgaa tataaaaaca accaactttt tgctgaagaa gtcgctattg ccgatattat
     2701 cgagcaatac ggcacgccag cttatgttta ctccagatct acccttgaac gccactggca
     2761 cgcattcaat aatgcgtttg gctcgcaccc acatttagtt tgctttgcag tcaaatccaa
     2821 ctctaacatt gccttgttaa atgtaatggc tcgtctcggt tcaggctttg atattgtctc
     2881 tcaaggcgag ttggagcgtg tcttagctgc cggcggcgaa gcctctaaag ttgtcttttc
     2941 cggtgtggca aaatcgcaca gcgaaatcaa acgagcattg gaagtcggga ttcgttgctt
     3001 taacattgaa tcggtttccg aacttcaccg cattaaccaa gttgccggtg aactaggcaa
     3061 aatcgcaccg atttcactgc gggtaaaccc ggatgtggac gcccacactc acccatacat
     3121 ttccaccggt ttaaaagaaa acaaattcgg cgtgagcgtt actcaagccc gtgaagtgta
     3181 tcgcttagcc aaaaccttac cgaatgtgaa aattaccggt atggattgtc acatcggttc
     3241 gcaattaacc gaattgcaac cttttttaga tgcaacggat cgcttaatca tcttaatgga
     3301 gcaactgcgt gaagacggca ttgagctaca ccacttagac ttaggtggcg gtttaggcgt
     3361 gccttacaac ggcgaagagc ctccgcatcc gaccgaatat gccaaagcct tgctggaaaa
     3421 gctcaaaggc tatgaaaact tagaaatcat tattgaaccg gggcgtgcca ttaccgcaaa
     3481 tgccggtatt ttagtgacga aggtggaata cttgaaacaa aatgaagatc gtaattttgc
     3541 gattgtcgat accggtatga acgatatgat tcgcccggct ctgtatgaag cctatatgca
     3601 aattacggaa gtggataaaa ccttaaaccg tgacaaagct gtttacgatg tggtcggtcc
     3661 gatttgcgaa acctcggatt tcttaggcaa acaaagagaa ttggcaattt ctgaagggga
     3721 tttaatcgct attcgttctg ccggtgctta tggggcggcg atgtcttcaa cctacaactc
     3781 tcgcccacaa gcggcagaaa ttatggttga tggcaaccaa gcccatttaa ttaaagcccg
     3841 agccactttt gctgatttat ggcgtttaga aaaattatta ccttaatgag gaagaaaaga
     3901 tgaaattata tggattaacc ggtgcttgtt catttgtacc acacgttgcc ctagagtggg
     3961 tgaaattgcg tgccaatcaa gattatgcgt ttcaagctgt tagccgtgaa tttattaaat
     4021 cggcggaata tctggcttta aaccctcgtg gtaacgtacc attgttggtt gatggcgact
     4081 tggccctcac gcaaaaccaa gctatcgtcc actatttaga cgagctttat ccggaagcta
     4141 aattattcgg cagcaaaacc gctcgtgata aagccaaagc ggctcgttgg ttagcttttt
     4201 tcaattcaga tgtgcataaa tcattcgtgc cactgttccg cttgccaagt tatgcggaag
     4261 gcaatgaaac gctcaccaaa actattcgcc aacaatcggc tgagcaaatt ttagaacaac
     4321 tggcttttgc gaatgctcat ttagaaaatc atattttctt tggcgaagaa atttcggttg
     4381 ccgatgcgta tctctacatt atgctcaact ggtgtcgcct actagggttg gatttctctc
     4441 atctttccca actttctgcc tttatgcaac gagtggaggc agaccaaggc gtagataatg
     4501 tgcgtgagca agaaggctta aaaggttaat tcaccattgt tcatttaaga cggtagattt
     4561 tatgttaaaa tctaccgtct tttattttta ggaatcacca tgctaaatca ggtttcaaac
     4621 agcttgcttg ctccaagtgg gcttgaatta tcgcacttaa ctcaagtgtt agatcacttc
     4681 tccggccgtc atattgatta tgccgatctc tacttccaac tcagccaaga cgaaagctgg
     4741 agcttggaag acagcatcat caaagaaggc ggtttttata tcgaccgagg gttcggtgtg
     4801 cgagccatat caggcgaaaa aaccggcttt gcctacgccg atcaaatcac gttaaaacag
     4861 cttgagcaat gtgccgctgc cgcacgttca atcagcccaa caagcggtca attatcggta
     4921 aaaaatttca aaaaaacgac cgcttgttct cgctacccgg caatcaaccc gctagagacc
     4981 atcagccgtg aacaaaaggt cgaattgctc catttggtgg ataaaaccgc tcgaatggca
     5041 gatccgagag tgattcaagt gaatgcgaat ctctcagcgg tatatgaaga aatgttagtg
     5101 gcagcgactg acggcacact ggctgcggat attcgcccgt tagtgcgttt atctgtgtcg
     5161 gtactggtgg aacaaaatgg caagcgtgaa cgaggttcgg caggtgccgg tggtcgcttt
     5221 ggtttagatt ggttcttagc accaagcgaa accggcttta gccgtgcgga atcgcttacc
     5281 aaagaagccg ttcgccaagc cctcgttaat ctcacagcca ttcctgcacc ggcaggcacg
     5341 atgccgattg ttctcggtgc tggctggccg ggcattttgc tccacgaagc agtcggacac
     5401 ggcttggagg gtgattttaa ccgtaaggaa tcttcgctct tcagtggtaa aatcgggcaa
     5461 atggtcacct ctgagctttg caccattgtt gatgacggta cggtgccgaa tatgcgaggc
     5521 tcaatcacgg tagatgacga aggcgtgcct tcgcaacgta atgtgttaat tgaaaacggc
     5581 attctaaaag gctatatgca agacaaactc aatgcccgcc tgatgggagt tgccccaacc
     5641 ggcaacggca gacgggaatc ttacgctcat ttgccgatgc cacgaatgac caacacctac
     5701 ctcaccgaag gcaatcacga atttgaagag atgattgaat cggtcgaata cggtttatat
     5761 gctcctcact tcagtggtgg acaagtggat attacctccg gcaaatttgt gttctccacc
     5821 gccgaagcct acttaatcga aaaaggcaaa atcaccaaac ctgttaccgg tgcaaccctg
     5881 atcggcagcg gcatagaagc aatgcaacaa gtttcaatgg tcggcaaaaa aatggaactc
     5941 gaccccggca tcggcacttg tggcaaagaa gggcaatccg taccagtcgg cgtagggcag
     6001 cctacagtga agttggataa aattacggtg gggggaagag ggtaatctct ccccgtttgc
     6061 aaaatataaa gaaaatatca ccgcttgtag cgataaaagg aaaacaaaat ggcttgggta
     6121 caaattcgtt taaacagtac agataaacag gctgaggaaa tcagcgattt tttaaccgag
     6181 attggagcgg tgtcagtgac ttttatggat agtcaagata ccccaatttt tgaacctctt
     6241 ccgggggaaa cccgtctttg gggaaatacc gatgtggttg ggcttttcga tgcggaaact
     6301 gatatgaatc ttatcgtaga agcactaaaa accagcaaat tggtggacga aaactttgct
     6361 cacaaaatcg agcaaatcga agacaaagac tgggaacggg agtggatgga taatttccac
     6421 ccaatgcagt ttggcaaacg gttatggatc tgcccaagct ggcgtgaagt accagacccg
     6481 aatgcagtga atgttatgtt agaccctggt ttagcatttg gcaccggcac acacccaacg
     6541 acctcgcttt gcttacaatg gttagatagc ttagatttag aaggcaaaac ggttatcgac
     6601 ttcggctgtg gctccggtat tttagctatc gctgcactta aactcggtgc aaaacaagcc
     6661 atcgggattg atatcgaccc acaggcgatt ttagctagtc aaaacaatgc tgaggcgaac
     6721 ggcgtagcag aaaaactaca actattctta gccaaagatc agccaagaga gttacaagcc
     6781 gatgtcgttg ttgcgaatat tctagccggc ccactcaaag agttagcacc gaatatcatc
     6841 acgctggtta aaccaaacgg caatttaggc ttatccggca ttcttgctac tcaggctgaa
     6901 agtgtgtgtg aggcttatag cgaagccttt acgctagacc ctgttgtaga aaaagaagaa
     6961 tggtgtcgta ttacaggccg caaaatctaa tataagaagc cctgttttaa acagggctta
     7021 ctttttgata aattctacta ctctttacct gtcttgggaa tcgttctccc taaattaatt
     7081 aacacaagcg gtagaaataa caggaaaatt tacaaattac ataaatgaaa aaagccgact
     7141 gaaatcagtc ggctttctaa ataatggcag gggcggagag gctcgaactc ccaacacccg
     7201 gttttggaga ccggtgctct accaattgaa ctacgcccct attgataggt attcattttg
     7261 cacttatagg ggcgaattac tattcgcccc tgcattaaag attattggcg gaacggacgg
     7321 gactcgaacc cgcgaccccc tgcgtgacag gcaggtattc taaccagctg aactaccgct
     7381 cctaaattaa tagattgata atgccctact ctcacatggc gaatcaccac actaccatcg
     7441 gcgttactgc gttttacttc tgagttcggt atggagtcag gtagagccac agcactctgg
     7501 ttatcaatca aattctttca tttagtcagt ttactaaaat atagtttata ctttctaata
     7561 aactcactaa
//
LOCUS       DANLXB010000126         7552 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLXB010000126 DANLXB010000000
VERSION     DANLXB010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7552
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..708
                     /locus_tag="PXD41_001852"
     CDS             <1..708
                     /locus_tag="PXD41_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6289361.1"
                     /translation="LPPFNIILLWLLALILFSLGYKYAAYFFALLGILILYIFSIPYT
                     SQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITGIPLERMRYAAYL
                     HKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTTKENAIFSREILE
                     KENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKLNFMHFIPQAGAM
                     NSNMLALKEWIGYWKEK"
     gene            complement(785..2983)
                     /gene="priA"
                     /locus_tag="PXD41_001853"
     CDS             complement(785..2983)
                     /gene="priA"
                     /locus_tag="PXD41_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL6289362.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(2995..3607)
                     /locus_tag="PXD41_001854"
                     /pseudo
     CDS             complement(2995..3607)
                     /locus_tag="PXD41_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(3600..4499)
                     /gene="rarD"
                     /locus_tag="PXD41_001855"
     CDS             complement(3600..4499)
                     /gene="rarD"
                     /locus_tag="PXD41_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6289363.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(4726..5943)
                     /locus_tag="PXD41_001856"
     CDS             complement(4726..5943)
                     /locus_tag="PXD41_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL6289364.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            6131..7435
                     /locus_tag="PXD41_001857"
     CDS             6131..7435
                     /locus_tag="PXD41_001857"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL6289365.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT         2285 a         1655 c         1484 g         2128 t
ORIGIN      
        1 ctcccgccat ttaatattat tttgctgtgg ttgttagcat taatcctctt ttctttaggc
       61 tataaatacg ctgcttactt ctttgccttg ttaggtattc tgattttata tatcttcagc
      121 attccctata cttcacagaa attaggggat tcattagtcg aagcagagcc atttaccata
      181 gagaaatata aaaatgctca agcgattgtg gtgctaggtg gcgggctacg agacagccaa
      241 gagttattcg gcaaactggc aattaccggt attccgctgg aaagaatgcg ttatgccgct
      301 tatctgcata aagaaaccgg cttaccgatt ttagcgaccg gaagcagccc aaatgggact
      361 tctgaggcaa aggttatggc agatgaattt aaaatgttct tcaatattga gaccaaatgg
      421 ctggaaaata aggcgaaaac caccaaagaa aatgcgattt tcagccgtga gattttagaa
      481 aaagagaata ttcataaaat cattcttgtt accaaccaat ggcatatgaa acgggctgaa
      541 atgctgttta gccaacaagg atttgaggtg atgtctgcca gcgtcggttc tggcgatacg
      601 cccgatcatt acaaactcaa ctttatgcac tttattccgc aagccggtgc aatgaatagc
      661 aatatgctgg cattaaaaga gtggattggt tattggaaag agaaataacc gaagataaat
      721 agcagcaagg caggttttca cctgccttct ttttgcaaaa aatcagtcaa aaacaaccgc
      781 ttgtctaact aatctcttgt gggtcaatgt cgatattcag cctgatatta ttcggaatgt
      841 ttaaactttc cctttcttga tcaaaggcat cgagtagctg ttgtaatgct cctcggagag
      901 ggtgttgaat cagcaataac cagcggtaat gtcctgcttt cttcgccatt ggggctgaaa
      961 atggtggagg gagctggaag ccttgcccgt tttgttgctg gattttttgg ctaaaataat
     1021 ctgctaattg ctcaagcagc tgtaaggttt gttgattatc tttgccggtc gctttgaaca
     1081 aaacttgcga ggaaaatggt ggcaaactca ttaattgcct catttttaac gcctcatcag
     1141 caaaagctcg gtagccttgt tccagcaagg ttttaagcag tgggtgatca gggtaatggg
     1201 tttgtagcac cacttcgcct tttttctccg ctcgccctgc tctgcctgcc acctgtatgt
     1261 aaagctgtgc taatttttct tccgcacgaa aatcagttga aaataacgct gaatccacat
     1321 taacaatcgc caccaacgtc acattcggga aatgatgccc ttttgccaac atttgcgtac
     1381 caatcaaaat ttggcttttg ccctctcgaa tagcggtcaa atggttttcc aatgcacctt
     1441 tgcgagcggt agaatctctg tctatacgag tcacttggta atgagggaat tgctgattta
     1501 gcacctgctc aagttgttct gtgccgacac cggtagttat taaatgggtt gaaccacaat
     1561 gtccgcattg gcggggaatt accctttggg tggcacaatg atggcaacgc aacacttttt
     1621 gcttttggtg gtaagtaaaa ggcttattac acgcctcgca ctcacaaacc caaccgcatt
     1681 cgtgacaaag taataccggg gcaaagccac ggcgatttaa aaacagcatc acttgattgc
     1741 cttgctctaa ctgggttttc atcattgaaa gcaagcgctc cgacaaaccg gcagttaccc
     1801 gttgcgtttt taaatcaata atctgctgat tggcaagttg tgcattgccg gcccgagcgg
     1861 ttagtgtcag ttcgataaat ttcccgtttt gcacattgtg caaactttca agacttggcg
     1921 ttgccgagcc cagcacaatc ggaatatttg catttttcgc cctaaccacc gccaaatccc
     1981 gtgcgtggta acgccaaccg tcttgttgct taaacgagct atcgtgttct tcatccaaga
     2041 taatcacgcc caatttttga aactgggtaa ataaagcaga gcgagtgccg attacaatcg
     2101 cactttctcc atttttcgcc cgcaaccacg catttaaccg ctcagtttcg ttcatattcg
     2161 agtgcaatac gtcaatttca acgttaaagc gagctttaaa gcgttgtacc gtttgcggtg
     2221 ttagcccgat ttcaggcaca agcagcagca cttgttcctc tcgcttaagc accgtttcaa
     2281 ttaactgcaa atacacttcg gttttgcccg agcctgttac gccattgagt aaaaagctcg
     2341 caaaagtggt ttgtgcattt aaacggctga ccactaaggt ttgttgttta tttaagatca
     2401 gccgattgtt agtatttact aacggaaatt cacctagtga gtcttgccac gcttgtgcca
     2461 taaacggcac atcaattttc tcgatatacc ctttttcgag taagcctttc caagcagatg
     2521 ggctacaagc ggtcggtttt tcaaaatatt ttgcacattc ggcaagctcg gttaaccgtt
     2581 ccacctgctt tttggctttt ttattttcac cgataatcag agatttccgc ccttgctccg
     2641 tcaccacaaa ataattcggt tgaactcgct cagtggaatc gccattgcgt aattttatcg
     2701 gtaaggctcc ggttagcact tcaccaatcg gggcgtggta ataacgagcc gcccagttca
     2761 gcagttgcca catttctgag tcaaaaatcg ggctagaatc caacgctgct ttaatcggtt
     2821 tgagtttttc ggttggcaca tcactagttt gcgggaaatc gaccacaatg ccgattttgg
     2881 tctggcgacc aaaaggcaca accacccgcc cgccttggca ggcattgaat gccggcggta
     2941 gcaaataatc aaaataacga tgtaacggca cattcagtgc cactctgatt aatctcactt
     3001 ctctaaacca attttgattg caagcccgat aaatatcgag ccgcagattt tatttaacca
     3061 atttccaaag gtttgattat gccgtaaaaa acgcccaaca ggtgcagcgg ctaagactaa
     3121 aatacttacc caaataatgc tggtggataa aaacgttagc cccaacagca taaaaggtat
     3181 tttccaaatt actggataca aactgcggca ataacgccaa gaaaaagagc aatactttcg
     3241 ggtttaatag attggtaatc aacccttgac ggaatatctt ccatagagga agtttgtcta
     3301 gattgatttt ctctaacacc aacggctctc gccacatttt aatgccgaga tagcagagat
     3361 aaattgcccc tgcgtatttc agaaaattaa ataaagtggg cgaatgtgcc acaatgcctg
     3421 caagcccgag tgaaaccgca agaatatggc ataaaatgcc tgctagaatg ccgaatgaag
     3481 acattaagcc cgactttttc ccctcagcaa tagtgcgagt taaaatatag atagtatccg
     3541 aacccggtgt aagatttagc agaatacaag cggtcaaaaa tccccaataa tttacaatat
     3601 cactcattat tcacactcaa tttacgttta cgctgctgac gaagagcaaa cataccatct
     3661 aatactaaaa atgaaatgga gatcaacaag caaatcatca acaagtaaga ttcatttgct
     3721 aacctttcgc caattaagaa agacaccacc aacatcaata gtggctcaac atagcctaat
     3781 aaaccaagca aattaaaggg taaaatcgtg ctggctagcg tatagctgat aagtgcagtg
     3841 ccactaatta aacccagtaa tgcaataaaa tagtaaatat tgaggttttg tgtttcgaca
     3901 tattgcatat cggtttgaga gataaaataa caagctacag ggagcaaata taaaatttct
     3961 accacaaagc tatgtaaatg gcttaagcca aactttcggc gaaggtaaaa atagattggg
     4021 taacctgtgc aaacaaataa acttgctatc gaaatttttc ccgtaaacaa aatattactc
     4081 gctacaccaa tgaaagcaac cacaatcgcc aaccatttat tcaaggaaag cgtttcttta
     4141 taaaccactt tgccaaatgc caccataata atcggcatta atagatagcc cattgaaacc
     4201 tcaatcgctt ttccgctatt gggagcccat aaaaacagcc acatctgccc gcccacaata
     4261 gatgccgtga ttaaaataac cagcaataaa taaggctctt gctttaggcg ttgaagaaat
     4321 acccaaaact cattttgttt tttaaataag tataaagcaa ggaaaagaaa aggaatcgta
     4381 accagcatac gaatgccgaa aatgctcaca cctgccagcg gttttagaaa gatcgccaaa
     4441 tagtacatac agccgaataa cactgaggct gaaagagata aaagaatgcc ttttaacata
     4501 gtgataagaa agtaattatt ttttaatttt tcaaatctcc cctacccctc ttttctaaag
     4561 aggattgtcg agttctaaat aaatgaataa tgttcggagg taggggcggg tccagtgccc
     4621 gcccgcaaat taatatcgtt agcggacagg cacaggacct gtccctactg atattataga
     4681 acttacaacc ctgcttttat aaagtggggt aaagggagat tcgacttagt cttgacgata
     4741 ggttttcaag aaattcgcaa ggcgaccaat cgcttcttca atttgatgtg cataaggcaa
     4801 agttaccaca cggaagtgat ccggtttttt ccagttaaaa ccggaacctt gcactaatag
     4861 cactttttct tgtcgcaaca aatcgtagat gaatttttgg tcatctttaa tgccgtacat
     4921 ttcggtatca attttcggga acatatataa cgcccctttc gcttttacac agctaatacc
     4981 cggaatttgt accaataatt cgtgcatttt atttcgttgt tccagcaaac gaccgcccgg
     5041 caacacaaat tcattgatac tttgataacc acctaatgcg gtttgaatgg cgtgttgcat
     5101 cggcgtattg gcacataaac gcatagaaga gagcatatcc aacccttcaa taaaaccttt
     5161 ggcttgatgc ttcggaccgc tcagcaccat ccagccctga cggaaaccgg caacacgata
     5221 cgccttggat aaaccgttat aagttacggt taatacgtcc ggtgcaagag cagcaatatg
     5281 gtgatgtacc gcaccatcat agacaatttt ttcataaatt tcgtcagcaa aaataattaa
     5341 gttatgctga cgggcaagtt ctgcaatttc cagcaaaatt tgacggctat acactgctcc
     5401 ggtcgggtta ttcgggttga taaccaaaat ccctttagtg cgaggcgtga ttttcgattt
     5461 aatatcttca agatcaggga accactcatt ttcttcatcg cacaggtaat gcactgcttt
     5521 accaccggct agggttgaag ctgctgtcca taacggataa tcaggcattg gaattagaat
     5581 ttcatcgcca tcatttaata acgcctgcat cgacattgta atcagttcag atacgccgtt
     5641 gccgatgtaa acatcgttta catccatacc acgcatacct tttgattgat aatattgcac
     5701 aatcgctttg cgggcagaat acaaaccttt tgaatcacaa tagccttgtg cggttggaag
     5761 attacgaatc acatccacta aaatttcatc gggtgcttca aagccaaaag gggctgggtt
     5821 accgatattt aattttaaaa ttttatgccc ttcttcttct aagcgaagtg cctctttatg
     5881 aattggccca cggatatcgt aacgaacctg agctaactta tctgatttgg gaaaacgatc
     5941 cattgtaaac ttcctataat gtattatcta attgtagtct catcccgctg ttcaaaaaat
     6001 cggtaattcg gaatgaattt gtaaacatta ctctaatttg ggaggaaaaa aaagaggaaa
     6061 tacgttaaaa tggagacctt tttttcaatc agctaaaaac aagcggtttc tttttctgat
     6121 ttttttgcaa atgcttattt ttcatcaatt aaaacaagaa cttacaaaaa gttactcaaa
     6181 agtgggaaga gagcaaggat tggtcgccat tcaagcctct atgccgctat tggaggcaaa
     6241 tattccgcta ctcggttggt tgaaaacaca aaaaacaagc taccctcact tttttctgca
     6301 atatcgtgat acagatcaga ccattgccac cattggcaca cttcgccaat tttatacgct
     6361 agaagctgca caatctttta ttcaacaaca tcatttcccg ttaatcggcg ggcttcaatt
     6421 tgaaggcaat acgcaattta ttttgcctca attttcattg gtaaaaaatc agcaaaattt
     6481 aaccgcttgc ttctattttg atagtgataa ctttgaacaa caagcggtta tttttgaaca
     6541 atttcttgca aatttcagcc aaattaccga attaggacta acggataatc cgctcgtttc
     6601 aatgagtgcc accagccatt ttgagcaatg gaaagccaat attgaaaaag cgattgtttc
     6661 tattgagcag ggcgattttc aaaaagtggt attggcaaat gcgatgagac ttcattttga
     6721 gcaacccatt tgtgcttaca gcttgctggc acaaagccaa aaaacaaatt taggttgtta
     6781 ccacttttta tgggcggaaa gtgctgatgt tgcctttctt ggctcaaccc ctgagcggct
     6841 atatcaacgc caagggctac acttttctac cgaagccctc gccggcaccg ctgcggttac
     6901 caccagtgaa gtgcaaaccg aactcaatgc acaatggctg ttaagtgatc ccaaaaatat
     6961 ctatgaaaat caattagtgg ttgatgacat tgaaaaccaa ctcaaagatt gcgtgaccga
     7021 atttgcagta tccgaggcaa aaattaagcg tttgcataat gtgcaacacc tacgccgcca
     7081 aattcaagca acgctcaaac cggacacctc agattcagat tgcttaagca aaatccaccc
     7141 aactgcggca gttgcagggc ttccccgcca aaaagcaaag ggttttatta ccgaaaatga
     7201 gccttttacc cgccattggt atgcaggtac attaggcgta atgggcaacg aggaagccga
     7261 attttgcgta acactccgtt ctgcattaat ttcacaaaat tcaattacgc tttatgccgg
     7321 tgccggcatt gtgtcaggct cagatccaca atcggaatgg caagaaatta aacgtaaggc
     7381 acaaggaatg gcaaaactgt tggatgttga tttagtaaca aaaggggaac tgtaagctag
     7441 gctttcagaa cttaatctct taattatttc tttctatatt ttcatttcca acttcccaac
     7501 aaaatatatt attgccacca aattagtagt gaatattcca taattaaaaa at
//
LOCUS       DANLXB010000127         7515 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLXB010000127 DANLXB010000000
VERSION     DANLXB010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7515
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            40..1965
                     /locus_tag="PXD41_001858"
     CDS             40..1965
                     /locus_tag="PXD41_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL6289366.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            2039..2404
                     /locus_tag="PXD41_001859"
     CDS             2039..2404
                     /locus_tag="PXD41_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL6289367.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            2406..3092
                     /locus_tag="PXD41_001860"
     CDS             2406..3092
                     /locus_tag="PXD41_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL6289368.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            3176..4939
                     /gene="msbA"
                     /locus_tag="PXD41_001861"
     CDS             3176..4939
                     /gene="msbA"
                     /locus_tag="PXD41_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL6289369.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            5028..5660
                     /gene="lolB"
                     /locus_tag="PXD41_001862"
     CDS             5028..5660
                     /gene="lolB"
                     /locus_tag="PXD41_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL6289370.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            5648..6502
                     /gene="ispE"
                     /locus_tag="PXD41_001863"
     CDS             5648..6502
                     /gene="ispE"
                     /locus_tag="PXD41_001863"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL6289371.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            6528..7478
                     /locus_tag="PXD41_001864"
     CDS             6528..7478
                     /locus_tag="PXD41_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL6289372.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
BASE COUNT         2145 a         1386 c         1730 g         2254 t
ORIGIN      
        1 caaaatattt tgtaaattcg accgcttgcc tgtttttaaa tgacaaaata cgacgataaa
       61 attcagcatg catttagcga aaatgggttg ctcagccaaa atatcagtgg atttcgacca
      121 cgccaagcac agcttgaaat ggctcaagtg gtcgcaaaag cagtaaaatt tgcgacacct
      181 gttgtggtag aggcgggaac cggcacaggc aaaacctttg cttatcttgt gccggcacta
      241 ctttcaggca agaaaactat tctttcgaca ggttctaaaa acctgcaaga tcaacttttt
      301 aatcgagatc ttcccactat tcaaaaagcc ctgaaataca aaggcaaaat tgcgttactc
      361 aaagggcgtg cgaactattt gtgtttagag cgtttagatc aagtgaccgc aatgggcgta
      421 cttggggata aatccgttct taccgattta aaaaaagtca gtaaatggca aaatgccact
      481 aaaacagggg atttaagtga atgtattacc attgccgaag atagcccgat tctaccgcag
      541 ttagttagca ccaccgagag ttgcttaggc tcggactgcc cgcattttaa agattgttat
      601 gtggtacaag cccgccgtaa agcgatggag gcagacgtag tggtggtaaa ccatcaccta
      661 ttctgtgctg atatggcagt aaaaaagacc ggttttggtg agttgatccc tgaagctgag
      721 ctggtgatct ttgatgaagc tcaccaactg ccggatattg ccagccaata ttttgggcaa
      781 tcgctttctt cccgccagtt atttgatatt tgtaaggata ccaatattgt ttaccgcact
      841 gaactcaaag atctgtctca attaggcaaa gcggctgatc acttgacgaa agtagtgcaa
      901 gatttccgat tattgatggg cggagaaggg cagattcgag gcaatttgcg agagttattt
      961 cgtgataaaa aagtggtcga tggcttggta aaagtggctg aaaatattga ttttttaagt
     1021 gaagtggcga aaaaatcgct ggggcggtcg gaaacgttgg ataaaatttt cgagcggtta
     1081 gcagaagtta aggttcaact taaaaaatta atggatacta gtgtgacagg ctattgttac
     1141 tggtatgagg cgaatggacg atcctttggg ctgcatatta cgccgcttat ggtggcagat
     1201 aaatttggtg aacagttgaa gaaccagcaa attggttggg tgtttacctc agccacactc
     1261 gaagttgggg gcaaattcga tcatttttgt caacggctgg gcatcgaaaa tgcggagcag
     1321 ttggtgttac aaagtccgtt tgattaccaa catcaatctt tactctgtgt gccccgctac
     1381 ttgccggata ccaataaatc caatacttta actgctctcg ggcaattatt aaaaccggtg
     1441 attgaggcga ataaagggcg ttgtttcttg ctttgtactt cctattatat gatgcgaggt
     1501 ttagccgact ttttacgcga acacagttcg ctgaatgtgt tattgcaagg cgaaaccagc
     1561 aaaagccgtt tattggaaaa atttgtgaaa gaagatcaca gcgtgttggt ggcgacccaa
     1621 agtttttggg aggggattga tgtgcgaggc gatgatttat cgttggtgat tattgataaa
     1681 ttgccgttca cttcaccgga cgaaccatta ctcaaagccc gaatggaaga ttgtaagata
     1741 cagggcggtg atccgtttaa cgatattcaa attcccgaag cggtgattac cctcaaacaa
     1801 ggtgtagggc gtttaattcg tgatgtgacc gatagaggtg tagtgattat ttgtgattcc
     1861 cgtttggtga tgcgaaatta tgggcaaact ttcttgaaaa gtttaccgcc gtctagacgc
     1921 actagagatt tggggaatgt tattcaattt ttgaaacaaa aatagggtta caagcggtca
     1981 gatttctgca gatttttgca aaaaaacgga taaaaataac cgcttgttga ggagttatat
     2041 gttgtctaca ttgctgcgta tggttgcttc tttggcattg ttatttgtga tgctttattt
     2101 aggcaagtta atcgtttatc tattccccat cgggatcccg gatagtattt taggtatgct
     2161 tatcttattc ggctgcttgg ttatcggcat tgttaaagtg gaatgggtga taccgagcgc
     2221 gaaaccgctc acacgttata taacactatt tttccttccg atttgtgtcg aactcatcga
     2281 acatcttgag ctgttacgcc aaaatctgaa cacttttgta ttagcaacgg cattaagcac
     2341 cttagtttct gtggtcgcga ttggcgtgtt tgcacagtgg atttttcatt acaagagagg
     2401 gtaaaatgag ctatctttac actgtgttga cggtaatcat gtttattgcc ggtttgaaaa
     2461 tcagccaaaa actcaagagc agttttctga accctttctt aattgcactc gctttgctaa
     2521 ttggtgtatt actgattttt aatatccctt accaagacta ttatcaaggt aattccccct
     2581 tgaataactt acttggcgtt tctgttgtgg cacttgctta ccctttttat gaacaattac
     2641 cccatatccg taaaaaatgg cgacagattg tcgtgatttt gctgtttagt accatcatta
     2701 cgatgataac cgggcttggg ttttcattat tatttggggc aagccaagag atcttagccg
     2761 ccattttgcc taaatcggta tcaatgccaa tggcaattat tattacgaat gaaattaatg
     2821 gaaatgttgc aatcgcagcg gttggggtga tgatcgcagg cttagtggga tctattttag
     2881 gctttacgct tctgcgcctg gcaaaagtaa gaaatgtgat ggtgattggg ttaagtatgg
     2941 gagctgcttc ccacgcatta ggcacggcaa gatgcttaga gcatagtatg aaagccggta
     3001 gctatagttc tatcgcatta gtggcttgtg gtgtgctgtc ttctatattt gcacctttaa
     3061 tatttaacgt tatcgtcacg ttatgttact aaaaacagtg aaatctcaaa ccttatttgg
     3121 taactggctg aaatcaaggt acaataccgt gatttttcaa tgaaaataga gaattatgca
     3181 agaacaaata acacaagaaa aagatctttc tacgcttaaa acctttaagc gtttatggcc
     3241 gactatcagc ccgtttaaag cgggtctgat tacaggtgct gtcgctttag tattaaatgc
     3301 gttagtggat tctagtctta tctatctcct caaacccttg ctagatgaag gctttgggca
     3361 agctaataat gattttctga aattgatggc ggtgcttgta gtagttttta ttttagtgcg
     3421 cggtattacc aattatattg ccagttactg tttagcttgg gtgtcaggca aggtggtaat
     3481 gacattacgc cgccatattt ttcaacattt aatgtatatg ccggtaagct attttgataa
     3541 caacccgacc gggcgtttgc tctcacgagt gacttacgat accgaaatgg tggcgagttc
     3601 tgcttctcat tctttagtga ctattgtgcg tgaaggggct tatctgctgt cattgtttgt
     3661 ggtgatgatc tataccagtt ggcagctttc tattgtgtta tttgtgatgg ctcctatcat
     3721 tggggtactg atcagtttcg tttcaaaata ttttcgtcaa ttaagtcgca atatccaaag
     3781 ttcaatgggg gagcttactg tcacgacaga acaaatgctt aaagggcata aggttgtact
     3841 ttcctttggt gggcaggaaa ttgagaaagc acgttttgat cgagtcagta atgatatgcg
     3901 tcgtaaaggg atgaaagtcg tttctgctga tggcatttct gatggtgtgg tacagcttat
     3961 cgcctctttt gcgttatctg ctgtgcttta tgttgcgacc ttccccgagg tgatgagtga
     4021 gaatttaacc gcaggttcat tcacagtagt gttttcttcg atgatggcaa tgttacgtcc
     4081 tctaaaatca ctcaccaatg tgaactcgca attccaacgt ggaatggcag cctgccaaac
     4141 gttatttgaa tttttagatt taaaaactga aaaagatcac ggcttaatct ccgttgctaa
     4201 agctgaaggc aatgtggaat ttaaaaaggt aagctttagt tatgaaggta aagaggaaaa
     4261 agcactcgat aatatttctt tcaccattcc taaaggcaaa acagtagcat tggttgggcg
     4321 ttccggctcg ggtaaatcaa ctattgccaa tttgcttacc cgtttttatg atgtgactga
     4381 cggtcaaatt ttgcttgatg gaattaatat tcaagattac cgcttaaaaa acttaagaga
     4441 acaatgctcg gtggtttctc aacaagttca tttgtttaac gatactattg ctaataatat
     4501 tgcttatgct gcaatcgaca aatacagccg agaagaaatt attgctgctg caaaagctgc
     4561 acacgcaatg gaatttatcg aaaaattgga aaatggctta gacactgtaa ttggtgaaaa
     4621 tggcgcaagt ctttccggtg ggcaacgcca acgcttggca atcgctcgtg cattactgcg
     4681 aaattctcct gtgcttgtgc tggatgaagc tacctctgca ttagatacgg agtcagaaag
     4741 agcgatccaa tctgcacttg aagtgctaca gaaagatcgt acggtgttgg tcatagcaca
     4801 ccggttatca acgattgaaa aagccgatga aattttggta gtcgatcacg gaaatattat
     4861 tgagcgtggc agccatacgg aattgttagc acaaggtggg gcttataaac aactccatag
     4921 tttacaattc ggagcctaat ttgtagggga gaaatatgtt tctccccaat taatgataaa
     4981 aacagggcga aaaatatttc gtccctacaa taatttattt ggatactatg aaaaaactga
     5041 caaaactttt atctcttagt gctttactgg tcttaaccgc ctgtaattcg gtactaaatg
     5101 cctcaacaga ggtgcaacaa ccaacagtac aaattccgca tgacgatcca caatggcagc
     5161 agcatttagc gaaactgagc caaattcaag gctatactgc aacggggcaa tttggctata
     5221 tttcgcctga agagcgtttt tcttcccatt tcaactggcg ttatactaat ccaatccaat
     5281 ttgggttaga gctttcctcg aatctctcga ctaaatcact gaaattagag cgtaataaac
     5341 gaggcttaac ggtttcggac aatgagggta atagccgttc tgaccgtgat gttgatgcgt
     5401 taatgcaaga gattatcggt gtttcgtttc ctatcgatca gtttgcctat tgggtaaaag
     5461 gcttgcctga aaaagatggc aactatattg tgaatgaaaa acgccagctg tcgcaattta
     5521 gttatccgct taatggcacg ctttggaaag caagctatgt ggagtatcac gaagatcgtg
     5581 taccaaactt accgaagctg attgtgcttg aaaacggcac tcaaacgttg aagatccgca
     5641 ttgaaaaatg ggcgtattaa tgaagaaagt caccttaccc agcccggcaa aattaaacct
     5701 gtttttatac attaccaata agcgggcaga cggttatcac gagctacaaa cgctgtttca
     5761 gtttttagat tttggtgatg aaattgagat tgagatcaca gaaagttcag aggttgaatt
     5821 aattaatccg gtagaagggg tggcaactga ggagaatctc atttaccgag cagcaaaact
     5881 tttgcaaaaa acgaccgctt gtaggcaagg ctgccgtatt gggattaaaa aaaacctacc
     5941 gatgggcgga ggtgttggtg gtggatcttc taatgctgca acagtattag tcggtttaaa
     6001 tcacttgtgg aataccgagc tttcattgga aaaattggca gaattaggct taagtttagg
     6061 ggctgatgtg ccgatatttg ttagaggtat ggctgctttt gccgaaggcg tgggggaggt
     6121 gttaactcct tgtgatccac aagaaaaatg gtatgtagtg ctaaaaccag aagtgtcgat
     6181 ttcaaccgca gcggtgttta ccgacccgaa tttacctaga aatacgccaa aacgcccctt
     6241 agccgaatta ttatctttac cgtgggaaaa cgattgcgaa aaagttgtac gagaaaagta
     6301 ttctgcggtt gaagatctta tacaagaatt gttacaatat gctcagttta ggctaacagg
     6361 cacaggtgct tgtattttcg ccgaatttga aacaaaagca gaagccgagc aggtttttgc
     6421 acataaaccg gaagccgtct tcggttttgt ggcgaaaggg caaaatattt cgccattaca
     6481 tcaaatgtta ttccaaatct aaccatctta accttaagga tcaatccatg acagatatta
     6541 aactgtttgc gggcaacgca actccggaac ttgctaatcg tattgcaaaa catctttata
     6601 cctcattagg taatgcaaca gttggtcgtt ttagcgatgg tgaaattcaa gtacaaatca
     6661 atgaaaatgt gcgtggaggc gatattttta ttgtgcaatc cacttgtgca ccaactaatg
     6721 ataatttaat ggaattgatc gtgatggtag atgcgcttcg ccgtgcatca gctggtcgta
     6781 ttaccgcagt gattccgtat ttcggttatg cacgccaaga cagacgcgtg cgttcggccc
     6841 gtgtgccaat taccgcaaaa gtgattgctg atttcttatc cagcgtaggg gtagatagag
     6901 tcttaacctg cgacttacac gcagagcaaa ttcaaggttt ctttgatgtg ccggtagata
     6961 acgtatttgg ttcccctgtg ttaatcgatg atattttgaa aaaatccgat ttggtcaacc
     7021 ctatcgtggt ttctccagat attggtgggg ttgttcgtgc aagagcggtg gcaaaattat
     7081 taaatgatac cgatatggca attattgata aacgtcgtcc aaaagcgaat gtatcacagg
     7141 taatgcacat tatcggtgat gtggctgatc gtgactgtat tttagttgat gatatgatcg
     7201 atactggtgg tactttagtc aaagcggctg aagcgctgaa agaacgtggc gcccgtcgtg
     7261 tctttgctta tgccacacac gcggtatttt caggcacagc agctcaaaat ttagcgaatc
     7321 ctgctttaga tgaaattgta gtaactgata ctattccact gagtaatgag attaaagcat
     7381 taaataaagt acgtgtttta acattatccg gtatgttagc agaagcaatt cgccgtatta
     7441 gcaatgaaga atccatttca gcaatgtttg atgcctaatt tatgagaaaa aacccagtcg
     7501 aaagattggg ttttt
//
LOCUS       DANLXB010000128         7511 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLXB010000128 DANLXB010000000
VERSION     DANLXB010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7511
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            18..1481
                     /gene="ubiD"
                     /locus_tag="PXD41_001865"
     CDS             18..1481
                     /gene="ubiD"
                     /locus_tag="PXD41_001865"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL6289373.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            complement(1566..2390)
                     /locus_tag="PXD41_001866"
     CDS             complement(1566..2390)
                     /locus_tag="PXD41_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6289374.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVALQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            2517..3362
                     /locus_tag="PXD41_001867"
     CDS             2517..3362
                     /locus_tag="PXD41_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL6289375.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            3819..6761
                     /gene="rne"
                     /locus_tag="PXD41_001868"
     CDS             3819..6761
                     /gene="rne"
                     /locus_tag="PXD41_001868"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL6289376.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            6907..7467
                     /locus_tag="PXD41_001869"
     CDS             6907..7467
                     /locus_tag="PXD41_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289377.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
BASE COUNT         2432 a         1587 c         1649 g         1843 t
ORIGIN      
        1 cgaaaaatat gaccgctatg aagtataaaa atctccgtga atttctcgat ttccttgagt
       61 ctcagggtga attagtccgt attcagcaag aaatcgatcc ttatttagaa atgacagaaa
      121 tcgccgaccg caccttacgc aaaggcgggc cggcattact gtttgaaaac ccgaaaggct
      181 atcaaatgtc ggtgttgtgt aatttattcg gcacgcccaa acgggtagct ctgggaatgg
      241 ggcaagaaga taccaaagct ctgcgtgagc tgggcaagtt acttgccttt ttaaaagagc
      301 ctgaaccacc gaaagggttt aaagatttga tcgggcaact gccacaatgg aagcaaattt
      361 taaatatgcc gcctaaggta ctgagcaaag ccgattgtca gcaagtggtg atttcgggtg
      421 atgaggttga tctctacaaa ttaccgatta tgcactgttg gccgggcgat gtcgctccac
      481 tggtcacttg ggggctgacg attacgcaag ggccttacaa aaaacgccag aatttaggca
      541 tttatcgtca gcaacttatc ggcaaaaaca aactgattat gcgttggctt tcccaccgtg
      601 gcggtgcgtt agacttccaa gagtggaaag ccgaaaaccc gggtaaaccg tttctggtgt
      661 cggttgcgat tggtgcagat ccagccacta ttttagcggc agtcacccct gtgccggata
      721 cgctttcgga atatgcgttc gcagggctgt tgcgagggca taaaaccgaa gtggtcaaat
      781 ctatttccaa tgagttagaa gtgccggcaa gtagcgaaat tgtgctggag ggctatatcg
      841 atctggaaga aaccgcattg gaaggccctt atggcgacca caccggctac tacaacgagc
      901 aagagtattt tccggtattt accgttaccc atattacgat gcgaaaagat gcgatttatc
      961 attctaccta cactggcaga ccacctgatg aaccggcagt attaggtgaa gcattgaatg
     1021 aagtctttat tccgattttg caaaaacagt ttccggaaat tgtcgatttc tacttgccac
     1081 ctgaaggctg ttcttaccgt ttagcggtag tgacgatgaa aaaacaatat gccggacacg
     1141 ctaaacgggt gatgatggga gtttggtcgt tcctgcgtca atttatgtac accaagtttg
     1201 tgattgtgtg cgatgacgat gtgaacgctc gagattggaa agatgtaatt tgggcgatca
     1261 ccacccgttg tgacccggct cgagatacga cactgattga acacacgccg atagattatc
     1321 tcgattttgc ctcgccaatt gcagggttag gctcaaaaat ggggattgat gccaccaata
     1381 aatgggcggg tgaaaccacc cgagaatggg gaacacccat cgaaaaagat gacaatgtgg
     1441 tgaaacgcat tgatgagatt tgggattctc ttggcattta aggcaacatt taaccgcttg
     1501 tgcaacataa caagcggtta aattttttga catttttacc attcggctat ttgtttctca
     1561 tcaggttacg actctttatt ttgagccagc cactcggtag gcgaaagccc taattcccgc
     1621 ataaagacac ggctgagagc agcattatgg ctataaccga cttgctctgc caccaatgct
     1681 actggtatcc ctttttgtaa taaatgctgg gcaaccgcta gtcgccagtt agtgagataa
     1741 tccatcggtg aaacccccat cgtttgttta aaataagcag caaagcgtga gcgagacatt
     1801 aatgccacat ttgccaactc ctctacattc caatctcgct ctggtgcatt gtgaatagct
     1861 aacagcactt tccccagttg cttatctgcc aagcctttta acaaacctgt ttgaatatac
     1921 cctttttcca aacattggag ggcaactttc aaggtaaaat aggcacataa atgatgaatc
     1981 attgcctgat aaccacaccc tttctgattc acttcactaa aaatttgatc ggctaatacc
     2041 cccaattccg gatactgtgc caactctaag atcacaatat tgtgcaaggt atgagttaat
     2101 gggttgcgaa tccctttgcc aaaatcaaaa ttaatacaaa atatatctaa cccactatca
     2161 tctaacgggt gcaaactatg caaaatattg gttggtgaaa aaataatcgc tgggcgttca
     2221 atcgtaatcg ggcgttcggc agcctgattt aaaataaaac gtccctgacg aacgaaatgt
     2281 aaatagcctt tattctcttc attaaaactc ccgatttggc ataactgacc tagatgaaat
     2341 aaatccgtgc gaaactgaaa ttgggtaaaa agatgagtca aactatccac attaagctcc
     2401 ttgggtaaag aattgagacg aacggttaaa acaggagaaa tgcgatcact ataatagcaa
     2461 cccgttcggt aacgcaagtt atcattacaa tttgtatatc tattaatgag gataaaatga
     2521 tgtcacagga acaatttgaa gaaatcaacc aagaacgccg tcaagccctt aaccacggct
     2581 ctcgtattgc aatggcagcc agtgtattag gtgcattagg tattgcatca acagcaaatg
     2641 caaaacaagc cagtgcagaa aaatcacctt atgccgagcc ggaacaatac ggtttaaaac
     2701 gccatggaat gaccattgat ccaaaacgtg tggcattagt ggtagttgat ccacaaattg
     2761 acttcctagg cccgaaaggc gtgatgtggg gcgtgttagg tgactcaatt aaagaaaaca
     2821 acactgtagc taacattgaa agcttattta aagcagcaaa agcagtcgat atgccaacct
     2881 ttgtttcgcc acactactat tacccgactg atcacaaatg ggaatttggt tcaccgggtg
     2941 aacactttat gcacgacagc ggaatgtttg cgagaaaagg tcaatacacc atggaaggct
     3001 ttgaaaattc aggtgcagac tttatgcctg agtacaaacc atacattttt gatggcaaaa
     3061 cagtgattac ctctccacac aaaatctttg gaccggaaac caatgactta gtgttgcaat
     3121 tacgcaaacg taaaatcgac caagtaattt tagccggtat ggctgccaac ttatgtattg
     3181 attcacactt gcgtgaatta atcgaacaag gttttgaagt aacagtggtg aaagatgcaa
     3241 ccgcagggcc tcgtattcct gaaggtgacg gctaccttgc agcattaacc aactaccgta
     3301 ttatcgcaaa tgacctctgg accactgaag aagcagtgaa aaaaatgacg gcaaaagcat
     3361 aatattcgct ttacaagcgg ttaaatttag ctcttttttt gcaaatttaa ccgcttggat
     3421 ttcacgctta tctccagcac tcacactaaa tctcattatt tttccttatc accccattca
     3481 ttttcattat attcatctcc acaacaaata acagctacca tacaacaatt accttgcctt
     3541 tttcagggtt aaaatgcgat aatgactcgt tatttttggc ttgaaaaagc aatagaaaat
     3601 tgcaaaaaat aaagcaaaaa taaccgcttg taatagagat aaacaagcct taagtgattg
     3661 attttgcagt ttctttaaga caagacaaag taaacgtaag acaaccatca atgcactatc
     3721 gggaatgaag acagtcgtga gatagacatt aaatccattc ccttattaat gggtcaaaat
     3781 gaccgtgtaa gacaaaaaca aaataatgag aaaacacaat gaaaagaatg ttaatcaatg
     3841 caactcaaaa agaagagttg cgtgttgccc tcgttgatgg gcaacgctta tttgacttgg
     3901 acattgaaag cccgggtcac gaacagaaaa aatccaatat ctacaagggt aaaattaccc
     3961 gtgtcgaacc aagccttgaa gctgcattcg tagattacgg tgcagaacgc cacggcttcc
     4021 tacctttaaa agaaatttcc cgagaatact tcccgtcaga ctatgtgttt aacggtcgcc
     4081 cgaatatcaa agatattatt caagaagggc aagaagtgat tgttcaagtc agcaaagaag
     4141 agcgtggtaa caaaggagca gccttaacca cctttatttc gcttgcgggc agttacttag
     4201 tcttaatgcc gaacaaccct cgtgccggtg gtatttcccg ccgtattgaa ggtgatgagc
     4261 gtttagaact caaagaggct ttagactgct tagatgtacc ggaagacgtg ggcttaatcg
     4321 ttcgtaccgc cggtgtcggc aaatcgccgg aagagttaca atgggactta aaagtcttgt
     4381 tacaccactg ggaagcgatt aaaaaagcgg cggaatctcg cccagctccg ttcttaattc
     4441 accaagaaag tgacgtgatt gtgcgtgcaa ttcgtgacta tctacgccgt gatattggcg
     4501 aaatcttaat cgacaacaaa aaagtgttcg agaaagccaa aaaccacatt cgccttgttc
     4561 gcccggattt catcaaccgt gtgaaattat acgaaggcga agtaccacta ttcagccact
     4621 atcaaattga atcgcaaatc gaatcggcat tccaacgtga agtgcgttta ccttccggtg
     4681 gctctatcgt tattgatgta acagaagcct taacagcaat tgatattaac tcctcacgtt
     4741 caacccgtgg cggcgatatt gaagaaaccg ctcttaacac caacttagaa gcggcagatg
     4801 aaattgcccg tcagttacgt ttgcgtgact taggtggttt gattgtgatc gactttatcg
     4861 atatgacacc ggttcgccac caacgtgaag tagaaaaccg tattcgtgag gcgacacgcc
     4921 aagaccgtgc gagaatccaa tttgcccgta tttcccgttt cggtttgtta gaaatgagcc
     4981 gtcagcgttt aagcccatca ttaagtgagg cttcatcgca tatctgccct cgctgtcagg
     5041 gaactggtaa agtacgtgat aatgaatcaa tcgcactgtc aatcttacgt ttattagaag
     5101 aagaggcaat caaagaaaac actgcacagg ttcacaccat tgtgccggtg caaatcgcca
     5161 gctacttact caacgaaaaa cgtaaagcga tttccagcat tgaaaaacgc cacgatgtac
     5221 aaattgttgt agtaccgtct gaaagtatgg aaacgccgca tttcagcgta tatcgcctgc
     5281 gtgaaaatga aattactcca acgttaagct acgatttaac caagcattac gaagctcgtc
     5341 atgaagaaga acacccacat catcaccatc aagaagatgt gctggttacc cgtaacgagc
     5401 cggtgattac ggtagagtca gtgttacaaa gctcggagct gaatctccaa ccttcgccaa
     5461 caccaaccga accaccaaaa ccatcgctgt taagccgctt aattgcgacc attaaaggct
     5521 ggtttagtga agaaaaagtg gaagaaaaac cgaagccgaa agcacgcaat cagcgtgagc
     5581 gtcgccaacg ccgtgaacgc ccgaaccgta atgctaaagc ggaaaatcaa gagcgtaaaa
     5641 ctccgcaagc tcaaactact ccagcggaag aaaaaccgat gcgtagcgag aaaaaagcac
     5701 gccgagcggt agtggaagaa gtttccggtg taaccgagca agagagtcgt agcaactccc
     5761 gtgaggttca aactgaacgt cgccaacgcc gtgatctacg taaaaaagtg cgtatcgaaa
     5821 cacaagaagt agaagtggaa aatctaacac ctgctgttga ggaaacggtg gcaaaacaag
     5881 ttgaaaatgt gcaaaaaaat caacaaattc aaccgcttgc aacccaagaa gtacctgttg
     5941 aaacagctcc tgaggtagaa acaacgaacg aaggacgtga aaataaccgc caacgccgtt
     6001 tacctcgcca tttgcgtgtg ggcaatcagc gtcgtcgtga aaatcaacgc aatcaggtta
     6061 tttctcctat gcctctaact tcagctgttg cttcgcctga gcttgcgagc ggtaaagttt
     6121 gggttcaggt tacctctact gtcaaagtag aggaaaaagc atcattctta tctgttgatc
     6181 aaatgcttga acagcaagaa aatcagcttg ttgagacaga gaaaaaatca gaagagaaga
     6241 agcttcatac agttagtccg ctaggtggct ttgtagcaca agcaactaac cgtgatttgg
     6301 ttaaggagaa gcaagaacag ctttccaaac cgaaagaaga aaaagttgct tctgaagacg
     6361 taaaaccagt agaggtaaaa gagcatattg ctccatttgg tagtgttgtt gctcagcatt
     6421 ctgaacgtga tttagttaaa gagaaaaatg agcgagtcag taaattccaa tcgcaagcaa
     6481 cggttgcacc agcgattgtg gaagaggtta ctaacccgat tgaagtgcca aaatcaactt
     6541 acgaaagcga ttatcgattt aacggcagat taggtacatt ctctcgtgtt gagcataccc
     6601 aagccgctat gaccattgct tctgcaccaa gtgacaagct tgaagtagtc gaaattagcc
     6661 aatggcaaaa ctctaaatac tatttctatg gcaaagggtt tggcggatat accagcgcag
     6721 tgagccaagt gcagtcagcg cctcgttcaa ccaatggtta agtacaatta attggtttaa
     6781 atgcctatta gttataacta ataggcattt ttttatcaaa gtatgaactt tctatcaatt
     6841 tttctgccta agtaaacgca ctttattaca aagtgcgtta tttttagttt atttaaggaa
     6901 ctcggtatga aaaaatcatt tttatcatta ttagtgttag gtacaactat ggcacttgct
     6961 gcttgtgatc aggcaaaaga agccgcgcaa tcaactacag acaaagcggt tgaagtaaaa
     7021 gaagctgtag ctgaaaaagc tgcagaagtt aaatcggcta ctgaagcgaa ggttgaagag
     7081 ttgaaagcgg cagcaaatga tgcagctcaa gcaacagcag ataaaacaga agaggcaaaa
     7141 aaggcagtgg cagagaaagc cactgagtta aaaaccacaa ctgaagctaa agtggaagaa
     7201 ctaaaagcag cagcaaatga tgcagctcaa gcaacaacag ataaaacaga agaggcaaaa
     7261 aaggcagtag cagagaaagc tgctgagtta aaagccacaa ctgaagctaa agtggaagaa
     7321 ctaaaagcag cagcaagtga tgcgactcaa gcaacagcag ataaagcaga agaagctaaa
     7381 aaggcagtag ctgagaaggc agcagaagtg aaagttgaga cagaaacaaa agttgaagaa
     7441 atgaaaaaag cgattgaaag caaatagtgc tttttagttt ctctgtagct atcgaaacac
     7501 gctaaaaata a
//
LOCUS       DANLXB010000129         7327 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLXB010000129 DANLXB010000000
VERSION     DANLXB010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7327
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            63..482
                     /locus_tag="PXD41_001870"
     CDS             63..482
                     /locus_tag="PXD41_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL6289378.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            553..2109
                     /locus_tag="PXD41_001871"
     CDS             553..2109
                     /locus_tag="PXD41_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL6289379.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2167..2424)
                     /gene="rpsQ"
                     /locus_tag="PXD41_001872"
     CDS             complement(2167..2424)
                     /gene="rpsQ"
                     /locus_tag="PXD41_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL6289380.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2424..2615)
                     /gene="rpmC"
                     /locus_tag="PXD41_001873"
     CDS             complement(2424..2615)
                     /gene="rpmC"
                     /locus_tag="PXD41_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL6289381.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2615..3025)
                     /gene="rplP"
                     /locus_tag="PXD41_001874"
     CDS             complement(2615..3025)
                     /gene="rplP"
                     /locus_tag="PXD41_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL6289382.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3039..3746)
                     /gene="rpsC"
                     /locus_tag="PXD41_001875"
     CDS             complement(3039..3746)
                     /gene="rpsC"
                     /locus_tag="PXD41_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL6289383.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3766..4098)
                     /gene="rplV"
                     /locus_tag="PXD41_001876"
     CDS             complement(3766..4098)
                     /gene="rplV"
                     /locus_tag="PXD41_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL6289384.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4109..4384)
                     /gene="rpsS"
                     /locus_tag="PXD41_001877"
     CDS             complement(4109..4384)
                     /gene="rpsS"
                     /locus_tag="PXD41_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL6289385.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4415..5236)
                     /gene="rplB"
                     /locus_tag="PXD41_001878"
     CDS             complement(4415..5236)
                     /gene="rplB"
                     /locus_tag="PXD41_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL6289386.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5255..5560)
                     /gene="rplW"
                     /locus_tag="PXD41_001879"
     CDS             complement(5255..5560)
                     /gene="rplW"
                     /locus_tag="PXD41_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL6289387.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5557..6159)
                     /gene="rplD"
                     /locus_tag="PXD41_001880"
     CDS             complement(5557..6159)
                     /gene="rplD"
                     /locus_tag="PXD41_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL6289388.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6175..6804)
                     /gene="rplC"
                     /locus_tag="PXD41_001881"
     CDS             complement(6175..6804)
                     /gene="rplC"
                     /locus_tag="PXD41_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL6289389.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6830..7141)
                     /gene="rpsJ"
                     /locus_tag="PXD41_001882"
     CDS             complement(6830..7141)
                     /gene="rpsJ"
                     /locus_tag="PXD41_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL6289390.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2137 a         1559 c         1360 g         2271 t
ORIGIN      
        1 tatactgata aacacataac aaaattcatt tatattaatg gagattcaac acggctgaac
       61 aaattgttcc ttcaaatgaa gctgttttaa aagcagtcca cgatacttta gttatttcaa
      121 caactgattt acaaggtgtt attacttacg ctaacgacct tttctgcaaa ttaaccggtt
      181 ttacccgtga agaattaatt ggacaaccgc ataatatcgt acgccaccca gctgtaccaa
      241 aagaagttta taaagatatg tgggatacaa tccaagccgg taaaatctgg acaggtatcg
      301 taccaaactg cggtaaaggc ggtgtagttt atgtggttga taccaccgtt caaccaatgt
      361 ttgatgaaac aggcaaaatt acaggctata tcagcgttcg ccgtgtaatt aatgatttaa
      421 tgaccaactt tgaagcagta gaatcagcaa aagaaatctt tgatgacttc tacggtgaat
      481 aattaaaaaa caatgattgc gtgtaaaaga tgatctcttt tacacgcaat tttttatttt
      541 cgaggagttt gtatgtctct cattccccat atccacattg cttatggttc ggagtctggt
      601 aacgcagaaa agcttgccca acaattagct atccaaccct ttttacttcc ctactcaccc
      661 acactttcta cattaaacga aaccgattta agccaattat ctgccgagag tttattgctt
      721 attgtaacca gctcctttgg tgatggcgaa ccacctgaaa acgccgatga atttgcagaa
      781 aaattggaaa atttgaccgc ttgtaatctg caatatgcga tattcgggct aggtgatatt
      841 acttatgata aattctgtgg ctatagcaaa caactagatt cattattaca acaaaaacaa
      901 gctaaagctg tgattgcaag ggttgatgcc gatttaaact atcaagaaat ttttaaacaa
      961 tggctacccc tagtggagca ggcattacat tcaacaaaca aagaaacgat ccaacattcc
     1021 ctttctgttc aagcttacgg cgaggaaatg gcataccaag cagaagtgtt ggaaattaag
     1081 catttggcaa actcaagccc tgcggtgtat cacattcgtt tatcattaaa agagagcggt
     1141 attttctatc aagcagggga tttaatttat gtcaaagtgc agcaaccaga cagactatta
     1201 aatgaatatg cagaatggtt taacgatcaa aatgcagttg cattactacg ccataaagaa
     1261 ctccgactac taagtaaaaa tgtactgcgt gatattcaaa aaatttgcgg cagtaatgaa
     1321 ctcaaagatt taactaaaat ttccaataaa aaagcattgg aacaatatgt ctatgggcgg
     1381 gatttattag acgtattacg cgattttgac ccaaacaaaa gcgtgacatt agccgattta
     1441 gagccaattt tatctaactt agccgcacga gcctattcaa ttagctcttg cggtaaaact
     1501 caccctgatt atgttgattt atgtatccgc cacgtttcgt atcatttaaa cggtagagat
     1561 tatcaaggga ctgcaagtgg gtatttatcc gaattacaag cgggcgattt tgtctcgatt
     1621 tttgcaaatg ccaatccgaa tttccgttta cccgaaacat taaccgctcc ggtggtgatg
     1681 attggctcag gtactggcat tgctccgcat atcgcatttt tacaagcgtt agagcagcaa
     1741 tatcaggggg ttgaaagcta tttattcttc ggcgagcgtt atcgtgataa agattttctg
     1801 tatcaaacgg aactggaaaa ttacttagca aaaggcacct taactcagct gtttactgct
     1861 ttttcacgtg atcaggcaga gaagttttat gtgcaagatg ccctatcgca acaagcagag
     1921 ttagtttggc atttaattca gcaaggggct tatttctata tttgtggtag caaagcaatg
     1981 agtaaagcaa tagatgcgga actcatcaaa attgcagatc aaattggagg cgatccttat
     2041 attgatgatt tcaataatat tattgcaaaa ttggtcgcag aaggccgatt aatgcgagat
     2101 gtatattagc aaatgaaaaa aactaaaaac ccagcaaaag ctgggttttt atttaatcat
     2161 agttcattaa gcaacaactg ctttctcaac tacacgaact aaagtccaag atttagtttt
     2221 tgaaatagga cgacattcct taatttcaac aacatcacct aatttagctt cattgttttc
     2281 atcgtgtaca tgaagtttag tagtacgacg gataaactta ccgtataacg gatgtttaac
     2341 tgtacgttcg atagcaacaa caaatgattt atccattttg tcgctaacca ctttaccttg
     2401 tactgtacga attttatcag tcattattca cccgcctttt cggttaatac agttttaact
     2461 tgtgcaatac tacgacgcac ttgttttaac tggtgggttt gttgaagctg accggtggct
     2521 gcttgcatac gcaatttgaa ttgttcacct aaaaggttca ctaactcacc attcagctct
     2581 tcaacacttt tattacgtag ttcttgagct ttcattacat caccgtctta gttacaaatg
     2641 tggttttgaa cggaagttta gctgccgcta atgcaaacgc attgcgtgca acttcttcag
     2701 aaacaccatc catttcatag agaactttac ccggttggat taaggctacc cagtactcaa
     2761 cgttaccttt acctttaccc atacggactt ctaatggttt ttcagtaatt ggtttgtctg
     2821 ggaacacacg gatccagatt ttaccttgac gtttaaccgc acggctcatc gcacgacgag
     2881 cagcttcaat ttgacgagct gttaaacgac cacggccaat agcttttaaa ccaaatgaac
     2941 cgaagctcac ttctgtgcca cccgcgatac cacggttacg gcctttgtgt actttacgga
     3001 attttgtgcg ttttggttgt aacattcagt gattctcctt atttacgacc tttgccacgt
     3061 ggcgcctttt taggctgtgc cgctggttct ttttcagatt caatcactgc agccattcca
     3121 ccaagaattt cacctttgaa gatccacact tttacgccga ttacgccgta agtagtgtga
     3181 gcttcagcag tactataatc gatgtctgca cgaagcgtat gtagaggtac acgaccttca
     3241 cgataccatt ctgagcgagc aatttctgca ccacctaaac gaccgctaac ttcaactttg
     3301 atacctttag cacctaattt catcgcgttt tgaactgctt ttttcattgc acgacggaac
     3361 atcacacgac gttcaagttg agaagcgatg ctatctgcga ctaatttcgc atctagctct
     3421 ggttttttca cttcagcgat gttgatttga gctggaacgc cagcgatttt cgcaactgcg
     3481 ttgcgtaatt tttcaacatc ttcacctttt ttaccgataa cgatacccgg gcgagctgtg
     3541 tgaatagtta cacgaatgct ttttgcagga cgctcaatag tgatgcgtga tacagaagcg
     3601 ttcgctaact ctttgtttaa aaatttacgt actttgaagt cgccgtctaa gttatcagcg
     3661 aaatcttgtg tattcgcgaa ccaagtagag ttccaaggtt taacaatacc taggcgaata
     3721 ccattaggat gtactttctg acccatttgt tattctccta cttaattaac gatctgacac
     3781 aaccacagtg atgtggcttg tacgttttaa aatacgatct gcacgacctt ttgcacgtgg
     3841 cattacacgt ttcatgcttg gaccttcatc aacgaagatt ttagcaactt taagatcatc
     3901 gacatctgca ccgtcattat gctctgcgtt tgcaatagct gactctaata ctttcttaac
     3961 aagcgtcgct gcttttttgt tagtgaaagt taagatttct aatgctacag aaactttttt
     4021 accgcgaatt aaatcagcaa ctaagcgagc tttttgggca gaagtacgag cgtaacgatg
     4081 tttagcaata gtttccatct tttacctctt atttcttagc tttcttatct gcggcgtgac
     4141 cgcggtatgt acgagtcggt gcaaattcac ctaatttatg accgatcatt tcgtcggaaa
     4201 cataaacagg aacgtgctga cgaccattat ggactgcgat ggtcaaacca atcattgatg
     4261 gaatgatcat tgaacgacgg gaccaagttt taattggttt tttatccccg ctttccaccg
     4321 ccttctctac cttcttcaac aagtgtaggt caaggaaagg acctttcttg agggaacgtg
     4381 gcattggtgt ttacctttta gttaatgaat taaattattt gccacgacga cgtacgatga
     4441 atttatcagt acgtttgttg tgacgagttt tcttaccttt ggtttgaacg ccccaaggtg
     4501 taacaggatg tttaccgaag ttacgacctt caccaccacc gtgtgggtga tctaccgggt
     4561 tcattgcagt accacgaaca gttggacgaa tacctctcca acggtttgca cctgctttac
     4621 caagaacgcg aagcatatgc tctgagttac ctacttcacc aatggttgca gtacactcag
     4681 ctaatacttt acgcatttcg cctgaacgaa gacgtaaagt tacatagtta ccttcacggg
     4741 caatgatttg aacgtaagca ccagcagaac gtgcaatttg accaccttta ccaggtttta
     4801 attcaacgtt gtgtacagtt gtacctactg ggatgttacg cattggtaat gcgttaccta
     4861 ctttaatcgg agctgaagca cccgcttgaa tttgatcacc agcagttaaa ccttttggtg
     4921 ctaaaatata gcgacgttca ccatctttat aaagtactaa tgcgatattc gcagaacgat
     4981 ttggatcgta ttctaaacgc tcaacaacac ccggaatgtc taatttatta cgtttaaaat
     5041 caattaaacg gtagtgttgt ttgtgaccgc caccaatgtg acgagttgtg atacgaccta
     5101 agttgttacg accaccagtt ttagatttag tatctaaaag tgctgcaaaa ggtttacctt
     5161 tgtgaagctc agcgtttaca actttaacaa cgtgacgacg accagcggag gtcggcttac
     5221 atttaacgat agccatttat tttatctcct ctgattactc tgccgcacct tcaacgaagt
     5281 caagcgattg accttcttga agagttacat aagctttttt ccagtcacta cgacgaccaa
     5341 ctttagcacc acggcgttta gttttacctt taactactac ggtacgaaca gaatcaactt
     5401 ttacttcaaa aagttcttca actgcatttg caatctcaac tttgtttgca tctaatgcaa
     5461 ctttgaatac gattgtattg cctttttctg cgttgtttgt cgctttttca gagatatgtg
     5521 gtgctttaag cacgtttagc aaacgttctt gttgaatcat gctaacatct cctcaatttg
     5581 ttttactgca tctacggtta caaccacttt atcgaaagca attaagctaa ctgggtcaat
     5641 accttgcaca tcacgcacat caactttata taagttgcgt gctgctaaga ataaattctc
     5701 atctacgttt gcagtaatga taagagcgtc atttaacgcc atatctttta atttttgtgc
     5761 taatacttta gtttttggtg catcgatttc gaatttctca acaaccacta aacggtcttg
     5821 acgaactaat tcagaaagaa tgcttttgat tgcaccacgg tacattcttt tgttcacttt
     5881 ttggctgtga tcttgtggtt tcgcagcaaa agttacacta cccgaacgcc aaattggtga
     5941 tttaatatca ccagaacgtg cacggcctgt acctttttga cgccaaggtt ttttacctga
     6001 accagacact tcagcacgag ttttttgagc acgagatcct tgacgagcac ctgctgcata
     6061 agcaacaact acttggtgga ttaatgcttc attgaactca cgtccgaagg tagtttcaga
     6121 aacagttagt gcgtttgcac ctacaacttg taattccatc tctatctcct agacttatgc
     6181 tttaactgcc ggttttacga taacatcacc attagttgca ccaggaacgg cacctttaac
     6241 taataataat ttacgctcaa catctacacg aacaacttca agtgattgaa cggttacacg
     6301 ctctgcacct aagtgtcctg ccattttttt acctttaaac acacgacctg gagtttggtt
     6361 ttgaccaata gaaccaagta cacgatgtga taaagagtta ccgtgagttg catcttgagt
     6421 acggaagttc caacgtttaa caccaccttg gaagccttta ccttttgatg taccagtaac
     6481 atcgactttt ttaacatcag taaagatgtc aacattgatt tcttgaccta aagtgaattc
     6541 ttcaccttca gtagtacgaa attcccataa accgcgtcca gcttcaacac ctgctttcac
     6601 gaaatgacct gcttctggtt tagttacacg gctagctttt ttagagccag tagtaacttg
     6661 aattgcagag tagccatcgt tttcaagggt tttaacttga gtaacacggt tggcttcgat
     6721 ttcgataacg gtaactggaa tagacacgcc gtcttcagtg aaaacgcggg tcataccaac
     6781 tttacgaccg attaaaccaa tcattgtaat aacctcttaa aattcccaat taacctagac
     6841 taatctgaac gtcaacgcca gcagctagat ctaaacgcat taatgcatca acagtttttt
     6901 ctgttggttc aacaatatca actaaacgtt tgtgagtacg gatttcatat tggtcacgtg
     6961 catctttatt cacgtgtgga gaaatcaata cagtgaaacg ttctttacga gttggtaaag
     7021 gaattggacc acgaacttgt gcaccagtac gtttagctgt ttctacgatc tccgcagtag
     7081 attgatcaat taaacgatga tcaaatgctt ttaagcggat acggattctt tggttctgca
     7141 ttagaccaga gctccaatta aaaaatttag ctaataaaaa aaccaaacta ccacttaaca
     7201 aattagttaa gggagctcag ttaaacctat atagttccaa aattaggaac attgtataca
     7261 ctacaatatc tgtagtgcca tttgataaat gattacatca aatgtcttta gatacctaaa
     7321 gctttgc
//
LOCUS       DANLXB010000130         7303 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLXB010000130 DANLXB010000000
VERSION     DANLXB010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7303
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..2445
                     /gene="thrA"
                     /locus_tag="PXD41_001883"
     CDS             <1..2445
                     /gene="thrA"
                     /locus_tag="PXD41_001883"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL6289391.1"
                     /translation="KFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKITNHLV
                     AIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQQVAA
                     EAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSYLESS
                     VDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACLKADV
                     CEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPLNIPC
                     LIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAARVFST
                     MSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDIIKDL
                     SIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIEAVKA
                     THKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDKMLLN
                     ENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYARALKE
                     GFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLAAGDE
                     VEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARKLLIL
                     VRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEGKVLR
                     YVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGNSVTA
                     AGIFADILRTLQGGVN"
     gene            2445..3392
                     /gene="thrB"
                     /locus_tag="PXD41_001884"
     CDS             2445..3392
                     /gene="thrB"
                     /locus_tag="PXD41_001884"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL6289392.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3507..4883)
                     /gene="cysS"
                     /locus_tag="PXD41_001885"
     CDS             complement(3507..4883)
                     /gene="cysS"
                     /locus_tag="PXD41_001885"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL6289393.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5039..5548
                     /locus_tag="PXD41_001886"
     CDS             5039..5548
                     /locus_tag="PXD41_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6289394.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5640..6569)
                     /locus_tag="PXD41_001887"
     CDS             complement(5640..6569)
                     /locus_tag="PXD41_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6289395.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6572..7291)
                     /gene="fdhD"
                     /locus_tag="PXD41_001888"
     CDS             complement(6572..7291)
                     /gene="fdhD"
                     /locus_tag="PXD41_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL6289396.1"
                     /translation="MPVALVYNGISHTVMMATPANLEDFALGFSLAEGILNAPSELYG
                     LDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQLEQVNQSCKIVKKN
                     NRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLAIREDVGRHVALDK
                     LIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTEMAVNMARENQFTL
                     LAFARKGKATIYAGEERLALN"
BASE COUNT         2138 a         1575 c         1559 g         2031 t
ORIGIN      
        1 aaatttggag gcacttctct tgccaaccct gaacgcttta tgcaagcggc agagattatc
       61 gagaaagctc atttggcaga tcaagctgcc ggcgtattat ccgccccagc caaaattacc
      121 aatcatcttg tcgctattgt agataaagcg attgccggtg aatcatttca atctaacctt
      181 tctgaagcta ccgagatttt ccacaacatc attaacggct tatatgctac aaataatcac
      241 tttgctaaag aagcactgtt agccttagtg gaagcggaat taaaccaaat tcagcaagtg
      301 gctgcagaag cagctcaaac taaatcgttg tcagataaaa ttgctgccac tattcactgc
      361 cgtggtgaaa aactctctat tgcgatgatg caagcgtggt tcgaggcaaa aggctatgaa
      421 gtcactcgta tcgaccctgt tgaaaaatta ttggctcacg gcagctattt ggaatcttcg
      481 gtcgatattg ccgaatccac caagcgagtt gatgcaggtt caattccaaa gaaaaatatc
      541 gtgctaatgg ctggttttac cgcaggtaat gagcaaggcg aactggtgtt attagggcgt
      601 aacggttcag attattctgc cgcttgtttg gcagcgtgtt taaaagccga tgtttgtgaa
      661 atctggacgg acgtagatgg cgtttacacc tgcgaccctc gtttggtgcc tgatgcagta
      721 tgcttagaaa caatgagcta tcaagaggca atggagcttt cctactttgg ggcgaaagtg
      781 atccaccctc gcaccatcgg gccattagtg ccgctcaata ttccttgttt aatcaaaaat
      841 accggcaatc cggacggaaa aggcacatta attgatggca atgtggcaaa cgataatctc
      901 aaagtaaaag ggattaccaa ccttgataac gtggcgatgt tcaacgtttc aggttcagga
      961 atgcagggaa tggtgggcat ggctgcccgt gtgttctcga cgatgtcaaa agccggtatt
     1021 tcggtgattt taattaccca atcatcatca gaatatagca tcagcttctg cgtgccggca
     1081 aaatcggcag aaaaagcgtt agcggctcta aatactgaat ttgcacaaga gttatctgaa
     1141 aacttacttg acccgattga tattattaaa gatttatcca ttgtttcggt agtgggtgat
     1201 ggtatgcgta ccgccaaagg aattgcggct cgcttcttct ctgccctagc ccaagccaac
     1261 atcagtattg tggcaattgc acagggttca tctgagcgtt ccatttctgc tgtcgtgccg
     1321 ttaaacaaag cgattgaagc agtaaaagca actcacaaat cgctatttaa cagtaaacgt
     1381 gtggtggata tgtttttagt gggtgtaggc ggtgtgggta gcgaactcat cgagcaagtc
     1441 aaacaacaaa aggagttttt ggcaaagaag gatattgaga tccgtgtgtg tgctttagct
     1501 aattcagata aaatgttact caacgaaaac ggcttaaatt tagacaactg gaaagaagat
     1561 ttagaaaaag caattcagcc gtcagacttt gatgtattgc tttctttcat caaattccac
     1621 cacgtggtaa acccagtatt tgtagattgc acttcggcac aatcggtggc gaacctgtac
     1681 gcacgagcct taaaagaggg cttccacgtg gtaacaccaa acaaaaaagc caatacatca
     1741 ggttacgatt actacttaga aatgcgtgaa aacgcccgcc aaagccagca caaattcctc
     1801 tacgaaacta atgtaggggc aggtttaccg gtaattgaaa acttacaaaa cctattagct
     1861 gccggtgacg aagtagagaa atttgaaggg attttatccg gctcgctctc tttcattttc
     1921 ggcaaattag aagaaggttt aaccctttcg caagcaactt taatcgccaa agaaaaaggc
     1981 tttaccgagc cagatccacg agatgattta tccggtgcag atgttgctcg taaactctta
     2041 attcttgttc gtgaaaccgg cttaccgctt gaatttgaag atattgaaat tgaaggcgta
     2101 ttgccaaaag gcttctcgga aggaatgagt cgtgatgagt ttttacaagc tctaccgtct
     2161 ttagacgaag aattcagcaa gcgtgtagaa gctgccaagg ctgaaggcaa agtgttgcgt
     2221 tatgtgggct cgatcacagg tgataaatgc cgagttgcca ttgaagccgt ggacgaaaac
     2281 cacccacttt acaaagttaa agacggcgaa aatgcccttg cttttctcac acgttactac
     2341 aaccctattc cattattatt gcgtgggtat ggtgcgggca atagcgtaac cgctgccggt
     2401 atctttgcag atattctgcg tactttacaa ggaggagtga actaatggcg ttacgaattt
     2461 atgccccagc ttcaagtgca aatattagtg tgggttttga ctcattaggc gctgcaatct
     2521 ccccgattga cggctctttg ctcggcgatg tagttcaaat tgaagagagt gaacaacaat
     2581 ttgagctaga aagtgcaggt tattttgtac gtaaattgcc caaagaacca caaaaaaaca
     2641 ttgtctatca agcctatgtg ctatttagcg aacgcttgaa attacgtaac ggcagtgtaa
     2701 aaaatttacg cttaacactt gaaaaaaata tgccgattgg ctcagggcta ggctcaagtg
     2761 cctgctcgat tgttgcagca ttagtggcac tcaataaatt ccacgatgaa ccgttctcca
     2821 aaatggaatt actggaaatg atgggcgaat tggaaggcag aatttcaggc tcaatccact
     2881 acgacaacgt tgccccttgc tatttaggtg gcctgcaatt aatgacacaa tcgctcggca
     2941 atatttgcca acctctgcca ttctttgatg aatggtattg ggtgcttgcc tacccgggcg
     3001 tggaagtatc aaccgccgaa gcccgtgcta ttttgccgaa aagctatact cgtcaagata
     3061 tgattcagca agcccgctac ttaggatctt tcgtccatgc ttgccataca catcaagata
     3121 tcttggctgc tacaatgatg aaagacctaa ttgctgagcc ttaccgtgaa gatttactgc
     3181 cgaactttcc ggctgttcgt caaggctgta aagacttagg tgcgttagcg gttggtattt
     3241 caggttccgg tccgacaatg tttgcgatag cccctgatct cgaacacgct caacgtttag
     3301 tgagctattt agagaaagaa tatctgcaaa acaacgaagg ctttattcat atctgtaaag
     3361 tcgataatca aggagcaaga gagctgaaat agccctctcg aacaaccata tcactaaata
     3421 acttaaagga ctgactccaa taccacttgg agcagccctt tttgattaat tttttgaaaa
     3481 gtctatcact tataaacaat cgaaggctat gccttacgcc aaattgtgcc gtttggggtg
     3541 tcttcgagga caatatttat cgctttgagc ttatctcgca cttcatcggc aaccgcccag
     3601 tttttagccg ctttggcttc gttgcgttgt ttgattaagg cttcgatttc tgccgtttca
     3661 tcgtcattcg catcaccttt taaaaacgca tcggggtctt gttccagtaa gcctagcacg
     3721 ccggctaact cttttaaacg aacggctaaa ccgttggctt ttgccatatc ttcggttttg
     3781 agtttgttca actcacgggc aatttcaaat aacaccgcta atgcccccgg ggtgttgaaa
     3841 tcatcgtcca ttgcggtttt aaaggcttct acatagtgtt ctccgatggc ttcgcccgac
     3901 acatcacaac cacgcagagc ggtatataaa cgctcaagag ccgaacgggc taaatcaagg
     3961 ttgtcaatgc tgtaatctaa taacgaacgg taatgagcgg ttaagaagaa ataacgtaac
     4021 gattcggcat cgtataagcc taacatatgg cgaatgctga agaaattgcc caaagatttc
     4081 gacatttttt ctttatcaat ggtaagcatt ccagtgtgta accaataatt gacataatcg
     4141 ccaccgtgag cacagcaaga ttgtgcaatt tcgttttcgt gatgcgggaa cattaaatcc
     4201 gagccaccgc cgtgaatatc aaaatgttcg cccaactctt tgctattcat tgccgaacat
     4261 tcaatatgcc agcccggtct gccattgccc cacgggcttt cccagcttgg ctcaccggct
     4321 ttcgacattt tccacaagac aaaatccatc gggtttttct tgatggattt aatttcaacc
     4381 cttgcaccgg cttgtagttg ctctaaattt tggcgggata atgcaccata tttctggaac
     4441 gattccacat caaacatcac atcgccatcg gctgcgacat aagcgtgtcc gttgtgaatc
     4501 agtttttcta ccatcgcaat aatttcagga atatgcttgg tggctcgtgg ctcaacgtcc
     4561 gggcgaagaa tgtttaacgc atcaaaatct ttgtgcattt cagcaatcat tctatccact
     4621 aattcatcgc aagtttcgtt attttctaac gcacgtttga tgattttgtc gtccacatcg
     4681 gtaatgttac gcacatagcg taaattgtag cctgaataac gtaaataacg ggcaatcaca
     4741 tcgaaagaga caaaagtgcg accgtgccca aaatgacaaa gatcgtaaac cgtgacgcca
     4801 cagacgtaca ttcccacctg atttgggtta atcggtttaa attcttcttt ttcacgtttt
     4861 aaggtgttat aaattttgag cataaagtcc tcttgtgtaa cattcagtaa caaatggggc
     4921 taagtatagc gaataagcgg tctgattttg agattttttt gcaatttggc gtaaactttt
     4981 taataatagc gagcgaaatt tattttccat tccattttta tttataaagg aacaaagaat
     5041 gattacatta cataccaatt tcggtgacat taaaatcgaa ttaaactttg aaaaagcccc
     5101 gattaccgct aaaaactttg aagattacgc taaagaaggg ttttataacg gcacgatttt
     5161 ccaccgtgtg attgacggct ttatgattca aggtggcgga atgacggcag gtatggctga
     5221 aaaaccgaca aaagatccga ttcaaaacga agcgaacaac ggtttaagca acaagcgtgg
     5281 cacaatcgca atggctcgca cttctgatcc gcattctgct tcgtcacagt ttttcattaa
     5341 tgtggcggat aatactttct tagattatcg ctcaaaagag atgttcggca gaagtgtagt
     5401 gcaagattgg ggctatgcag tatttggcga agtggttgaa ggtatggacg tggtcgataa
     5461 aatcaaaggc gtaaaaaccg gcaataaagg cttccaccaa gacgtgccgg ttgaagatgt
     5521 ggtgattgag tctgtaagcg ttgcctaatt ccgcaaatta gcctacaagc ggttgatttt
     5581 tcacaatttt ttgcatttct cagcgttgca aaaaagtagc agaaatcgac tgcttgtttt
     5641 tatagaaatt gatacagcca aataatcagc ggcattgtaa acacacaaag taaagtggtt
     5701 acgccataaa tcgcactggc ttttttggca tcttgcccgt aagccaccgc catttgggtc
     5761 gccgttgcag cagaagggct gatggtggct aagaatgtaa tcattaccac cgtttttcca
     5821 ttctctatcc agctcgcaaa accgccgagt ttaatcaccg ctaacaaaat cagcggaata
     5881 aaaatcaagc ggagaaaagc caccaagtaa atgcgtttat cggtaataat ctctttaaat
     5941 ggaattgctg caattaacat ccctgccaca agcattgcta aaggccctaa catatgccct
     6001 aaagttgaga gcgtgtttgc aagcgtagcg ggcagtttga tatgtagcaa aaacaacatc
     6061 ataccaatca caatcgcaat aatgttgata ttaaagatca tctttctaaa cggcacattg
     6121 cctttgccac aaatcagcag ccgtaagtga gaccaaaaca acacattttg caccacaata
     6181 aaagccgttg aataaatcac ccattcattg ccgaacaggg aggcaacaat cggaataatt
     6241 aagttgccgg agttggaata aatagcggtg gcttgttcta tgttgtctaa tttcaacgct
     6301 cttttgagca gccaaccaag cagaattaac aagccgttta ataagacgga gattaaaaat
     6361 gccagataca agccgtttag tatttcggtg gtgtaatcta cttgaaaagc agtaatcagc
     6421 attgccgggc tgataatgta aagtccgata accgaaatcg gataactgtg ctccgatttg
     6481 agtaatttag ttttaacgat gaggtagccg agcagcacca tcagggttaa ttgtagaatt
     6541 ttatcggcta ataaaagggc tatttccatt atcaattaag agcgagtctc tcttctcctg
     6601 cataaatggt cgctttgcct ttgcgggcaa aagcaagtaa ggtaaattga ttttcacgag
     6661 ccatattcac tgccatttca gtggtcgctg agatggcaca caacatttca atgccaacgg
     6721 ctaagcattt ctgcaccatt tcaaagctgg cacgactggt tacaaacaca aatccaatcg
     6781 gaaaatcagc tttagcatac caaccgatta atttatccaa cgccacgtgt ctgcccacat
     6841 cttcacgaat ggcaagcagt tttccatccg gggtaaaaaa tgcagcggcg tggcttgcac
     6901 cggtttcttt cgataagaat tgagcatttt ctagctgtaa taaacaatcc tctaaaatca
     6961 gtggattgac gttctgcaag cggttatttt tcttaacaat tttgcaactt tgattaacct
     7021 gctctaattg ctctacaccg caaataccgc aacctgttct gcctgccatt gagcggcgtt
     7081 tatcttttaa tgcaacaaat tggcggctcg atatttcaag ctgaatttct actccatttt
     7141 cttgttcaat tacatctaaa ccatataatt ccgatggggc atttaaaatc ccttccgcca
     7201 atgagaatcc taaagcgaag tcctccaaat tagccggtgt tgccatcatt acagtatgag
     7261 aaataccgtt atataccaaa gcaaccggca cttctgaaat taa
//
LOCUS       DANLXB010000131         7197 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLXB010000131 DANLXB010000000
VERSION     DANLXB010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7197
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..326)
                     /locus_tag="PXD41_001889"
     CDS             complement(<1..326)
                     /locus_tag="PXD41_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289397.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQI"
     gene            complement(336..542)
                     /locus_tag="PXD41_001890"
     CDS             complement(336..542)
                     /locus_tag="PXD41_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL6289398.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(1012..2226)
                     /locus_tag="PXD41_001891"
     CDS             complement(1012..2226)
                     /locus_tag="PXD41_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6289399.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(2429..2504)
                     /locus_tag="PXD41_001892"
     tRNA            complement(2429..2504)
                     /locus_tag="PXD41_001892"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2469..2471),aa:Ile,seq:cat)
     gene            complement(2598..3335)
                     /gene="pgeF"
                     /locus_tag="PXD41_001893"
     CDS             complement(2598..3335)
                     /gene="pgeF"
                     /locus_tag="PXD41_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL6289400.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(3367..3753)
                     /locus_tag="PXD41_001894"
     CDS             complement(3367..3753)
                     /locus_tag="PXD41_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6289401.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
     gene            3834..4835
                     /gene="yejK"
                     /locus_tag="PXD41_001895"
     CDS             3834..4835
                     /gene="yejK"
                     /locus_tag="PXD41_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL6289402.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLLWDELNDTLTIKGLPANLRDQLERNK"
     gene            4902..5243
                     /gene="bamE"
                     /locus_tag="PXD41_001896"
     CDS             4902..5243
                     /gene="bamE"
                     /locus_tag="PXD41_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL6289403.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            5436..6776
                     /gene="gdhA"
                     /locus_tag="PXD41_001897"
     CDS             5436..6776
                     /gene="gdhA"
                     /locus_tag="PXD41_001897"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL6289404.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            6938..>7197
                     /locus_tag="PXD41_001898"
     CDS             6938..>7197
                     /locus_tag="PXD41_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6289405.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICT"
BASE COUNT         2035 a         1300 c         1551 g         2311 t
ORIGIN      
        1 ctgatttgtt ttagttcatt ctgctgttgg aataatattt cttgctctgc gtagcattta
       61 ttttctaaat caacaatcaa cgcttgataa tattctatgc gtgcttgtaa accactattt
      121 ttatttttga tttcaacata ttcatctgct gaaagcgtgc cgatattggc taaattcgtt
      181 ttttgccgtg cgacaaattc cgctttttcg ttttgcaatg cctcaagaat atttttcgct
      241 ttgtctaatt cggtctgaat agctaaaacg gctttttctt gttcgtggaa tttagctttt
      301 tgttggttaa atgtttcaag tgtcataatt tgcccttatt ggttgcggtg ttgttcaatt
      361 ttgcgttgaa tccattgctg gatttcactt tctagccata ctttgctatt tgccccaata
      421 ctgatacttt ggggaaaatc gccggctttc attttgcgat aaatctgcgt ttctgaaagc
      481 gtagttacgg ctgaaacttc atctattttc ataaatcgct gttttgctgg tgtgttctcc
      541 attttgtttt actccgtaaa aatttgcttt ggcgtgctat tgcctgctaa cgtgtgaaag
      601 aataaatcat cttggatttt ttgctatttg ttagggctgt gaaaggagat tttacagatt
      661 agaggggctt aattctgatt tggaaaactt gcaagcggtt atttttctct gattttttgc
      721 aagttttcag cggttctttc atcgttctgt catcgagttt ttaaaagtgg tgtttctgcc
      781 tgcgtaaatt tgcgttttct tgcgtaaaat tgcgtaataa aaaacggcta tatgaaagtt
      841 tttcacgcta tacggggcaa tgtttgggct taattttgca tttgcgtaga aatcgagact
      901 ttaagtgtgc gggcgaggcg tgggatagac ggcacgggct gggagctgat aggaaaaaat
      961 gaaaattttt catcaagcaa aaagaaaggc ggattgctcc gcctttgtca tttaaatgct
     1021 cttgcattgt tctacaaaat ccgcccattc ctgcattatt ccacgtctgc ggtctagcca
     1081 gtttttacgg tggtatgcac tcattacggt gtctttgttc gtgtgggata aacaagcctc
     1141 aattactagc gtttcagtag taaaacgttc gtgtaaatag gtgctggcaa tgcttcttaa
     1201 accgtgagcc actaaaagcc ctttatattt tccaccgctt aagcgtttta ttgcattatt
     1261 cacggtttgg ctattagccg gtttgtttcg gtctgttcgg tgtgtaaaaa tatgtttatg
     1321 gtgtccgtta tatttcttca tttcctctag gattgcgata gcttgttttg ttagcggtac
     1381 agaatgcgga ttttttccgc ctttcattct atctgccgga atgttgagcg tcttagtttc
     1441 ccaatctata tcgctccatt gcaccgctac ggcttcaaac ggtctaagaa tattcaagag
     1501 ttgccattca actaataatt taatttgagg cgttctattt gatttctgca agtcttgcat
     1561 aaattcggct aactcttcgg gcattattgc tggctggtgt gtcgtgctta cgctggaaaa
     1621 cgccttttta atgacgctga ttgggttaaa attaattctc ccacacaata ccgcataatc
     1681 aagaatttct attaaattcc ctgctattct gtgcaaagtg tcgggcatta tccgatctaa
     1741 gtccgttaag cggttgattg tatcggttaa ggtaaaatct tccagcgtat agccttcaaa
     1801 acgtgggaat aaatgatttt ctaaccgctg taagcatttt tccattgttt taggcttgca
     1861 ttttcccttt gatagcttcc aatcagccca tttataggcg aaagattgaa tagattcttg
     1921 cttttcctta gcttctcttt gcattttggc taaatgctcg aaagggtcta agccttgtaa
     1981 aacaagggta tttagttcgt ctctctttaa gcgtgcttcg gctaagctca tttgcggata
     2041 gctaccgatt ctattttttg tgcttcgctt gcctgttttg gggctgatat agctataaat
     2101 ccatactttc gcttttttct gtgcaagaat aaatagcccg ttgctgtctg cgataggctt
     2161 cgcatttggg gaatatttga gattttttag taatgtgtct gaaagtggtt ttttagttgc
     2221 agtcatttct tctaatcctt gatatataag ggtttatcga agtttatgat ccctaaattt
     2281 tcccgttttc aaaataggga tcattttagg gatcataaac actaagatac aatgcaacta
     2341 aagaagacaa taagagacta taaaagaatc taagttcttg attttatagt aaatttgaga
     2401 caatgaaaga caatatgcaa cgcttagatg gtccccccag ccggacttga accagcgacc
     2461 aagcgattat gagtcgcctg ctctaaccac tgagctatgg ggggatttga aaagtggttg
     2521 gaattataga gaaaaaccga gtagtcgtct agaggcagaa gattactcgg ttaattattg
     2581 aacgagagaa aatagggtta ttctgttcgc caaattaagg ttgccattcg cccggtttgt
     2641 ttgtctcggc ggtaggaaaa aaacagttct ggttggctgt aggtgcaata ttcaccgcct
     2701 gaaatggcgg taatgcctaa tttattcaga cgttgggtgg caatttggta aagatttcct
     2761 aaaaatttac cgcttgtagt gctgtcttca ataagggctt ctttcgctct tgggtcaaaa
     2821 gcacagaatt ggtctgccac ttcactcccg acttgaaaag cattcggtcc gatagccggc
     2881 cctagccaag ctgatatttc gtgtggcggg cagttgaatt tctctaccgt cgcctctaat
     2941 atgccatcgc ataacccacg ccagccggcg tgtgccgccg caatttccga cccgtcttgg
     3001 ctggcaaata ataccggcaa acaatctgca gtcatcacta agcagacttg gtttggttga
     3061 ttggtgtaaa tcgcatcggc tttaatatta tcacctgaat agggaagttc aatcactcgg
     3121 gtgctgtgag tttgggttaa aaacagcgga gcttgtggta attgaaattt ctcaaccaat
     3181 aaagcacgat tttgagcgat atcttgtggc tcgtcattaa cgtgatcacc taagttgaaa
     3241 ctgtcaaaag gcggtttgct tactccgcct gttcttaagg tcgtcagtgc gtgaatatgt
     3301 ttaggcacat tccaatttgg aataatttta tccatttgca aaaaatctca agaaaatgac
     3361 cgcttgttat cggcgtactg caatcgcttc gatctcaatg ccaacatctt ttggtaaacg
     3421 agccacttct acgcaagaac gagccggaaa attagggtgt tcgttttctt ggaagaaggc
     3481 ttggtattcc gcatttacct ttgcgaagtc gttaagatct ttgacaaata cggtggtctt
     3541 tacaatatcg gcaacggtta agccggcttg ttcgataatg gctttcacgt tgttcagaga
     3601 ttggcgggtt tgttgcacaa tatcactcgg gatttcgccg gtttcaggat tcacgggaat
     3661 ttgcccagaa gttaaaacca tattgcctaa atcaactgct tgcacataag gcccaatcgc
     3721 tgccggtgca ttttctgtgt ggataactgt catcttgtgt tcctcttaat gaaaaataaa
     3781 cggattaatg ataatatctt ttcttattat ttggaataaa gagaagtgaa ttaatgagca
     3841 ttaatgtttc tgaaatcgtg ttacatcaat tacaaaaaac agagggcgag aacccggagc
     3901 ttaatacgtt tttgcgagaa aatttattgg caatttcccc tgaagtcgat caaatgatgt
     3961 tgcaattaca tcaagcctat caaagtaaag caaaggctta cggtatattt aaaccggagt
     4021 cggttttcgc tcaacagctc aaccgcttgt tggagcaaga aaccgatttt ttacctttta
     4081 gccatagctg tgccaaaatg cttgcagcag agctgattaa atatccgttt gccgatggtg
     4141 gcacttttat tttgtgtcgt tacacttttt tagctaccga atatttgttt attgcgttga
     4201 ttgatagccg taattcaatg ctggttgatg agcagttaga gattaaacgc acgcaatatc
     4261 tcgaaattgc acaatatgat attgcctgcc gcattaattt aactgaactg aaacttgacg
     4321 caacgtcaaa tcgctattta acttttgtga aaggcagagt agggcgtaaa attgccgatt
     4381 tctttatgga ttttttaagt gcggaagaag ggtttaatcc acaattgcaa aatcaaacct
     4441 tgttgcaagc ggtgagcgat tattgtgagc aaggggagtt atctgcccct caaactcgag
     4501 aagtgaaaaa gcaggtgttt gaatattgta aagggcagat aaatagtgga gaggaaattg
     4561 cgttaaatga gctttccaac gcattgccaa cactgaatga aatcgatttt gcccaattta
     4621 cgcaagagca agaatacggc ttggaagaga atattccgcc tatgcgaaat gcccttaaaa
     4681 ccctgacgaa attttccggt tcgggcaaag gagtaacgat tagctttaac gcagaattat
     4741 taggagagcg tttactttgg gatgaactaa acgacacact gacaatcaaa ggattaccgg
     4801 caaatctgcg tgaccagctg gaacgtaaca aataatggaa aatttttatc agtttaggta
     4861 ttatctcgtt atctgaattt tggattatca aaaggtcaat tatgaaaatg aaatctcttt
     4921 tagctgcaat gttgcttgca ctgggtgtaa cggcttgttc aaccgttgag aaagtggtgt
     4981 accgtattga tgtaccgcaa ggcaattact tagaacaaga taaaattgct caacttaaag
     5041 tcggtatgac agcggaacaa gttgaatatt tgcttggtac accaatgtta aagaacattt
     5101 ttgaaaccca ccgttgggat tatgtgttta ttaaacgtga aggttataaa gatcctgaac
     5161 aacgcaatct gtttatttat tttgatgcta aagggttagt atcaaaaatt gatgacagca
     5221 atgcgaatgc agaacaaaaa taggacgatt tgttggttcg aaaagcccac ttttaaaagt
     5281 gggcttattt ttttgaataa aaaataagca tttaaactta atttttctta ttttaatgat
     5341 aaatttttct aatctatctt ttcaaagcta aaattgcttg ctagacttcg ctcatcttaa
     5401 atacacaaca tcatcaattt attcaggagt ataatatgag cgatttaaac gcccttttcc
     5461 aaaaaatcaa acaacgtgat ccgaaccaag cccctttcca tcaagcggtt gaagaagtgt
     5521 tcggtagcct tgcccctttc ttagctaaaa atccgaaata tacccagcaa ggtttattag
     5581 ggcgtattgt tgagcctgag cgtgtaatta gcttccgtgt cacttgggtt gatgataaag
     5641 gtcaagtgca agtaaaccgt ggttaccgtg tacaaatgaa ctcagcaatc ggtccataca
     5701 aaggcggtat tcgtttccac ccaaccgttg atttaggcgt attaaaattc ttagcctttg
     5761 agcaagtatt caaaaatgcg ttaacgacat tgccaatggg cggtggtaaa ggtggttcag
     5821 actttgaccc gaaaggcaaa tctgatgccg aagtaatgcg tttctgccaa gcgtttatga
     5881 gcgaattata tcgccacatt ggtgctgata ctgacgttcc tgcaggcgat atcggcgtgg
     5941 gaggtcgtga aatcggctat atgttcggtc aatacaaaaa attacgcaat gaatttactt
     6001 cagtattaac cggtaaatcg ctgacttggg gtggtagctt aattcgtccg gaagcaactg
     6061 gttatggtgc ggtgtatttt gcagagtcta tgttagcgac taaaggtcag cagatcgaag
     6121 gaaaatcagt ggtaatttcc ggttcgggta acgtggcaca atatgcagct gaaaaagtga
     6181 ttcaaaaagg cggtaaagta ttaacggttt cagattctaa cggttatgtc ttattccctg
     6241 aatccggtat gacagaggca caattacaag cattattaga gttgaaaaac gaacgccgtg
     6301 aacgcttatc tgtgtatgca acagaacaag gcttaaaata ctttgacggt caaaaaccgt
     6361 ggggtgtgaa atgtgacatc gctttacctt gtgcaaccca aaacgaatta gataccgaag
     6421 atgctaaaga attagtgaaa aacggctgta tttgtgtggc agaaggtgca aatatgccaa
     6481 ccacattagg tggtgttgaa gtctttatcg gtgcgaaaat cctttatgct ccgggtaaag
     6541 cggctaacgc aggtggtgtg gcaacctcag gtttagaaat gagccaaaat gcaattcgtc
     6601 tatcttggag tcgtgaagaa gtagatcagc gtttattcaa cattatgaaa gcaattcacg
     6661 aaaactgcgt agaaaatggt actgaagcag atggtttcgt aaactatgta aacggtgcga
     6721 atattgctgg tttcaaaaaa gtggcaaatg cgatgttaga acagggtatt gtttaattta
     6781 ttatccctat tattcaagaa ctgcctcgat atatcgaggc agttttttta ttttaggttg
     6841 tagctagaga caagctaaat tgaaatcgta tttcatttgc caattatggt aaaatctatg
     6901 ccaatctcag ttttagcagt atgtgaaagg gcagtatatg atcattacga tgaaagatat
     6961 cgcaaaggaa gcaaatgttt cgttaggaac agtatcgaat gtattaaacg gaaaaagtaa
     7021 tgttagctta gctaaaatag aaaaagtaca agctgccgtt gaaaagttgg gttatcgtaa
     7081 aaatattcaa gcctctacgt taaaaagtgg cacaagtaat aaaattgcta ttatattgcc
     7141 caatattaca gagctgaaat atgcctgttt atatgaaaat cttgatttaa tttgtac
//
LOCUS       DANLXB010000132         7157 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLXB010000132 DANLXB010000000
VERSION     DANLXB010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7157
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            61..2360
                     /locus_tag="PXD41_001899"
                     /pseudo
     CDS             61..2360
                     /locus_tag="PXD41_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2438..3139)
                     /locus_tag="PXD41_001900"
     CDS             complement(2438..3139)
                     /locus_tag="PXD41_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL6289406.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3144..4553)
                     /locus_tag="PXD41_001901"
     CDS             complement(3144..4553)
                     /locus_tag="PXD41_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL6289407.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4555..5286)
                     /locus_tag="PXD41_001902"
     CDS             complement(4555..5286)
                     /locus_tag="PXD41_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL6289408.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5430..7034)
                     /locus_tag="PXD41_001903"
     CDS             complement(5430..7034)
                     /locus_tag="PXD41_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL6289409.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
BASE COUNT         2194 a         1560 c         1348 g         2055 t
ORIGIN      
        1 atctgtaaat ttcattgcca ttattttttt atggctattt attctagaag gactctaaac
       61 gtgttaaaga aaaattatct cactgtatca attctccttg ccattagtgg agtaggctac
      121 gctaatgaaa tctctttaga gactattact gttgatggaa atacgccttc aaccaaaggg
      181 aaattactag gtggtgaact aaatagcaat gaatctgttg ttgatgaaaa aaattaaaac
      241 aaggtagtat tacattaggt aacgctttat ctggtgaatt aggcattcat tcaagccagt
      301 tcggaggcgg tgcaagtacc ccaattattc gtgggcaaga gagtaaacgt gcaaaaatct
      361 tacaaaataa tggcgaaaac ttagatatgt cgggaatgtc tcctgatcat gcagtaaccg
      421 tagatgcgct acttgctaaa cgtattgaaa ttttacgtgg tccaactact ttactttaca
      481 gtgcaggtaa tacggcaggt gtaattaatg tggtagacaa taaaattcca accgctattc
      541 ccgaaaaagg ctatgagggg caatttggtg tgcgttttgg ctcagccagt aaagagcgtt
      601 taacctatgc aggctcaacc tttgcccttg gaaatcattt agccttgcgg gtacagggaa
      661 tgtataacaa agcttccgaa tactatgctc cacactttac gattgaaggc aaaccttacc
      721 accgcgtacc agatagcgat gtacaatcac aaaccggcac agtaagcctt tcttggattg
      781 gagagcgagg acatcttggt attgcttaca ctgatcgccg tgataaatat ggattaattg
      841 gtcacacaca caaatacgat cactatacta ttagtattat tcgccaagcc gttatgtttg
      901 caaaaggtta tttacgtttt tatccgcacc ttgcagaaga aggagatatt gactataaca
      961 accctggtat ccgtttactg catactcata ttccgggagg ctcacattat ggacaagata
     1021 ctcacgagca cggcaaacct tggattgata tgcactccaa gcggtatgat attgatggaa
     1081 gtttgcaaaa tccacttcct ggttttgaag aagccaaaat atcagctaac tatgtagatt
     1141 actatcatga tgaaaaagat ggaaaaagag ttgaaaatta cttcaagaac aaaggaaaaa
     1201 atctacgttt cgaattggtt cacaaagagt ggaaagggct aaaaggagct attggtgtgc
     1261 aatataccaa ccaatctacc tcagcacttg cacttgaagc ttcacgagct gcaaaagtat
     1321 ttaataaaca gcctttactc aataatccaa aaacaaaatt atggagtctc tttgcgattg
     1381 aacgccttaa tttaggtgac tttacctttg agttaagtgg gcgggcagaa cgtcaaaaaa
     1441 tagcaatgga ttatgatgtg aaattaattg atcgctggct aggctttaat acacctatgc
     1501 caaacttgga cccacataaa gacaaaggtt attcttatag ctttgcaact cattggtatt
     1561 tcgcaccaaa ccataagtta acattaaatg ctgcacatca agaacgttta cctaatgctc
     1621 aggaactcta tgctcatggt aaacacattg ctttaaatgc atttgaggct ggcaataaaa
     1681 atctaaaaaa agagcgttct aaccaaattg agctatcatt agcttatgtt ggcgacaaat
     1741 gggattataa attaaatctc taccacaccc gctatggcaa ctatatttac ccattaactc
     1801 ttaatgataa tcgtggacct aaatctttta ccgatgaata taacttgaaa gtgaatagat
     1861 attatcaagg cgaagctcgt tttagtgggg cagaaggcga aattggttat ctatttacac
     1921 caaattatcg cttagccgta ttcggagact atgtccgtgg aaagttagtc aacttaccta
     1981 atattgcaat gagttacaac atttggacag gtgaagttga caaatgggct tctcagccag
     2041 acatttctgc acctcgtata ccaccactac gtttaggagc aagatttaat gctgacttca
     2101 acctaaactg gtctggaatg ttagaatatt accgagtatt tgctcagaaa aaagtctcga
     2161 aatacgaaca agttacccct ggccatcatc aagtaaacct tggcgtaacc tatagtaatc
     2221 attttaatca aacagaatac caagtattcc ttaaagtgga taacttgctt aatcagaaaa
     2281 tgtaccaaca tgcctcatat ctaccacata ttccacaaat gggtagaaat gcaatgcttg
     2341 gaatgaatat cagtttttaa tttgtaaatc tctacaaaaa tataaccgct tgtaaatttc
     2401 tatctacaag cggttacttt cagtggattt tttgcaatta gagatcgtca attaccaagt
     2461 aaattttatt taccgggccg tgaacgccaa ctactttaat caactcaata tccgcagtcg
     2521 ccgatgggcc tgagatgata ttcacacaag atggcattct ttcacctcgt tgggcttttt
     2581 cgtgcagaat ttgtgcaagc tgtgccacac gaggtaacac tgtacttttg cgtaacacaa
     2641 ccaccgattt ttcgggcaat aagctcactg aacgcccaaa ttctttatcg gaaaacagta
     2701 caataccgcc agactctgcc aagccatatt caccgtaaac cacaccgata ttagcagttc
     2761 tggctttttc aaagttggtt tcagcttggt tgaaatccca cacatagctg tcttcgtatt
     2821 ttgcttgaat ggctgcggta atcccaagat cctttaaacg ttgatcgtta ttcacgatca
     2881 cactcgcccc gccatatttt tcacaaatat caataatggc ttgtggtaaa tccgcctctt
     2941 ttgcctctac tacatctgcc atcatcactc gggcaaaatc gataaactct tggcaaagtt
     3001 gtggttgagg gcgatcggtt aaacgggtaa tcgcgtggtt gttttccaac acaggaattg
     3061 gctcaggcac attttggcgt ggtctgccca tacgctgtgc caatttattt aagaaatttt
     3121 cacgattttg taaatccatt ttcttatcct ctgttattaa accattcacg gaaactttcg
     3181 ccttcggcag tcggtaaatc acgggctttc gtccattcac ctaacgcccc aaaattcacc
     3241 ggtgctttgc cgtttttaat caatttgctt gccactttcg cccccacttt tacgccgact
     3301 ttccaaaggg ttgggtgtga gttagcgaag ttaaagccaa aaatagacaa gcgttctgcc
     3361 attggcgtta agccggcatc cgcaattttc tcacggtgtt ttaagataag ctgtgccagt
     3421 ggaattttca ctggacaaac actgttacaa gcggtacaaa gtgagcaagc atacggcaat
     3481 tctttaaact cttcgtagcc accgagcaat ggcgaaataa ctgaaccaat cgggcccgga
     3541 tagattgaac catagccgtg accgccaatt tggcgatacg ccgggcaagt gttcaaacat
     3601 gcaccacagc ggatacaacg caacacttct tggaattcgc tttctaagat tttagaacga
     3661 ccgttatcga caatgaccaa gtggaactct tccggaccat cggtttcgcc ttcaagtcta
     3721 ggacctgtca gccaagtgtt gtaagcggtg agttttgccc ctaccgcact gcgagccagc
     3781 atggtaatta atacatcaac ctctttaaag gttggggcga tacgttccat acccattact
     3841 gcaatatgcg ttttcggcac agttgttgcc atacgcagat taccttcgtt ggtcactaaa
     3901 caaaccgagc cggtttccgg caccgcaaag ttacagcctg aaataccgat gtctgcctct
     3961 aagaaatctt cacggatttt ttggcggacg aatgcagtca tctcttcagg tgtttccgaa
     4021 ccttgataac ctagcacatc gtgcatttct tggcggattc tgtggcgatc tttgtggatt
     4081 gcaggtacaa caatatgaga aggtttatcg cccacaattt gcaataaata ttcgcccaaa
     4141 tcggtttcaa ccactttaat gccttctgct tctaaaacgt ggttcatccc aatctcttcg
     4201 gttaccatcg acttcgattt tacgattttc ttcgcatttt tagctttcgc cacgtttttg
     4261 atgtaatcag tggcttcttc ggcggtttcg gcaaagaaaa cgtgtccgcc gttttgggtg
     4321 actttttcgc ttaattggta gagataagcg tctaaattgg ctaaaacgtg gttacgaatt
     4381 gctttcgcat catcacgcca ctcttcccag ttgcccagct catccaccat acgctgacgg
     4441 tttgcaccga ttgtttcctg agccttaact aaggctttac gcacaatctc gttattaact
     4501 tgctgctcaa cacgttgttt aaacggcagg gtgttagttt gtaaataaga catcttattt
     4561 tcctccctgc attaacactt cggcaatgtg catcactttg attggcttac cttcacggct
     4621 taaacgaccg ccaatgttca tcaagcagct tacatctgcc ccgattaaat aatccggctc
     4681 atcggtatct acatttgcga ctttctcttt taccatctcg ccggaaattt ctgccatttt
     4741 gaccgagaat gtgccaccaa aaccacagca agtttcttgg tttttgattg gtaataactc
     4801 taacccttta acgtgctgta ataaagcaat aggctcatct ttaatcccca gcttacggaa
     4861 taagctgcaa gacgggtgat aaactgcttt gcccggtaaa taagccccaa catctttcac
     4921 gcccagtttg ttcacaataa aatcggttaa atcatagaaa cgatcagcca ctttcttcgc
     4981 acgttctgcc cattcttttt cgccaaagcg ttcaaaatga tccggatagg ttttgatcgc
     5041 atatacacaa gaacctgccg gggcgacaat cgggtaatca ttagcttcaa aggtttcaac
     5101 caagtttttc atacctgcta aagcttgctt agtgtaaccg ctgttgatcg caggttgtcc
     5161 acagcaacct tgtttttcta agaaagtgat tttacaacct aatttttcca ataaaagcac
     5221 agtatttttt gcaacccctg ctttcattac atctgcaatg caggttacgt aaaaattaac
     5281 gttcataaag aactcccaca gtaaatataa ataagaatta aactcaaaaa atgccgttct
     5341 aagacggcga aaggaagagg tggatttgca aaaaatttgc taaatctcac cgcttccttt
     5401 ctaaatcaag taagctgatt attaactcat tataggttat agaacatagg tactataaac
     5461 aatgccgaaa tcgcagcaat aacgccatac acgaacattg gcacggctgt tttcttaata
     5521 atattgcctt cttgtttctc aatgccggta acagaacaca cagccacgat gttgttaata
     5581 cacaccatat tccccattgc accaccaact gattgcaatg caagaattaa ggtaacagat
     5641 aacccgactt gctgtgccgt tgcatattgt actgttccga aggttaagtt agataccgta
     5701 tttgaccctg agaagaacgc accaattgca cctaagaacg aggcaaataa tgtccaagat
     5761 tgaccggtaa attctgcgaa gtttttacca atgatctgaa ccattgagtc tacaccacca
     5821 attaacatta attttaccat cacaatggca cctaaaagtg ctaagaatgg ttttttcact
     5881 tgtttaaatg aagtgccaaa aatctcttga gtatttttac ctgataccga gaaaatcggt
     5941 aagcaaatta atacggtcac aacaaatgga atcaacgcag gaacatacag taatttatag
     6001 ctagttgcta cattcgtacc taaaatattt ttcagtgcaa aaattaagcc ttggctaatt
     6061 tcaaagttag cgaaaccaag cgaactgaca atccaagctg ttgcatcatt tagcattgct
     6121 tttaatggaa gttgctgaat acgggtgatt accaaaatga agatcagtaa ccctgttggt
     6181 aataatgctt ttgccacttc accaaaggtc gctttatcgc cgtcaaggtg gttctcgctt
     6241 ttcgctaaac caatacccat atttgctacc cagactgaca ccaataaacc aatcgccccg
     6301 gcaactaatg atgggaattc gtagttaaat tgagcaataa tgaagtaagg aatgacacag
     6361 gcaaaaatgc tgatataaat aaacacgata ttttgacgaa tttctttcca gctcacaatt
     6421 aaacgcaatg ccataactgg aataataaac gcagcaatag agtggatcag tgcagtaata
     6481 gaaccaattt caagcacttg tgcatcggtt agtaaaccat cttttaataa tggtcccata
     6541 ccaaaccaag ttggtgtgcc aaccgcacca aatgacaccg gcacagagtt cattactaag
     6601 gctaacattg ccacttgtaa cggtttaaag cctaaaccaa ccagaattgg agctgcaatt
     6661 gccgccggcg taccgaaacc tgatgcgcct tcaatcataa atgcaaatgc ccaaccgata
     6721 atcatcaact gtgccaccgg attcgggtta attgtcccta accatttacg catagtgttg
     6781 gttgcacctg aaacttcaga gaaacggtta aataaaatcg ccccgaaaat aacggtaatt
     6841 ggggttaata catcacctaa accggcaata atattggcaa agattaacgt ggtatcatta
     6901 ccaaaatagg taagctgaag cacaaaaatt aataacgccg taagtggtaa agccacataa
     6961 gacggtaacg cgttacgttt taccattaaa taaatgagca aaacaattgg aaatacgctc
     7021 aggaatagag ccatactgca cctctttata tgattataaa atgacctaac tggtcggata
     7081 ggtgcgaatt gtactcttaa aaaaaactaa tgtaactagg ttgttacaat tttgtgatct
     7141 agctcgcatt tttaatg
//
LOCUS       DANLXB010000133         7065 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLXB010000133 DANLXB010000000
VERSION     DANLXB010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7065
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            15..908
                     /locus_tag="PXD41_001904"
     CDS             15..908
                     /locus_tag="PXD41_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL6289410.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            984..1667
                     /gene="yjjG"
                     /locus_tag="PXD41_001905"
     CDS             984..1667
                     /gene="yjjG"
                     /locus_tag="PXD41_001905"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL6289411.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            1664..2647
                     /gene="cysB"
                     /locus_tag="PXD41_001906"
     CDS             1664..2647
                     /gene="cysB"
                     /locus_tag="PXD41_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL6289412.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            2648..3292
                     /locus_tag="PXD41_001907"
     CDS             2648..3292
                     /locus_tag="PXD41_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289413.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(3366..4415)
                     /gene="ansB"
                     /locus_tag="PXD41_001908"
     CDS             complement(3366..4415)
                     /gene="ansB"
                     /locus_tag="PXD41_001908"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL6289414.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            4679..6316
                     /gene="pyrG"
                     /locus_tag="PXD41_001909"
     CDS             4679..6316
                     /gene="pyrG"
                     /locus_tag="PXD41_001909"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL6289415.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            complement(6484..7065)
                     /gene="nfuA"
                     /locus_tag="PXD41_001910"
     CDS             complement(6484..7065)
                     /gene="nfuA"
                     /locus_tag="PXD41_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL6289416.1"
                     /translation="MHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAECGVSY
                     CPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNAKMRKV
                     ADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTL
                     KEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
BASE COUNT         2127 a         1292 c         1512 g         2134 t
ORIGIN      
        1 tagattgaaa aattatgaac aaaaaacttc caccactcaa tgcattgaaa gcatttgaat
       61 ctgctgcacg ccatttaaat tttactaaag cggcagaaga tctcttcgtc acacaagctg
      121 cagtgagcca ccaaattaaa ctattagaag attttttagg tgcttccctg ttccatcgcc
      181 gtaaccgttt gctggaatta actgagttag gcgcacaata tttctatgaa gttcagccat
      241 tattagaaca aattgctctc gcaacagata aaattaggca gcaaagtagt cgtcaaattc
      301 tgactattag cgtaccacaa acatttggta tgcattggtt agtcccacgt ttggcggatt
      361 tccacgaaaa atatccagaa gtggaagtac gtattaaggg tgttgatcaa gatgagggat
      421 tattaggtaa agaaacagat gttgctattt attatggtaa gggggattgg caaggtctgg
      481 aatctatccg tttgacggaa tcccgtattg ttattttagc ttcgcctgag tatttatcgc
      541 aaaataccat tcatttaccg gcggatttag caggtaagca tttattacat tcctccaccc
      601 ataataagtg gaaaagaatg gttgaacatt tgcatataga agatatagta gatgcggaaa
      661 ctggctcaat ttttagccat acttttatgg tgcttcaagc tgcaatgcac caacaaggca
      721 ttgcgattgc caaccagttg ttggcacagc acgaaattga aaaaggtact ttaatagagc
      781 ctttcccaac cacattgttt gatgaaaaat cgttctatgt tgtctatcct tcgcaatcag
      841 cccaagttca gaaagtacaa ttttttgttg agtggattca gcaaaaaatg aaagagtgtt
      901 gtgcttaagc gtggctttat cagcggtatg cgaaaaatta gaaaaatttg accgcttgtt
      961 atctaagtta aaaaaggaat attatgaaat atcaatgggt attatttgat gctgatgaaa
     1021 ccttgttttc atttaattct tatcttggtt taaaagcgat gctggctcgt taccaaattg
     1081 attttagtga acaagattat caagactttc aagcggtaaa taaaccactt tgggtggctt
     1141 accaaaataa tgagatcact gctcaagata ttcaaaccag acgttttgta aaattatctg
     1201 ctcaaacagg cgtagatccg ctacaactta atcaagagtt aatggcggag atggcattcg
     1261 tcagtcagcc tttagaaggt gtaatggata tgttaaatgc tttatatggt aaagtaaaaa
     1321 tgggcattat caccaatggt tttaccgatt tgcagcaaaa acgtttagat aatactcaaa
     1381 cttcacattt ttttgatatt gtagtgatat cagaacaaat tggtgccgca aagcctgatc
     1441 gccaagtgtt tgattacgct tttgcattaa tggacgaatt tgatcgtact aaagtgctta
     1501 tggtaggcga taccctcgct tctgatattt taggaggtaa taatgctgga attgatactt
     1561 gttggttaaa tttgcttagt aaagagaatg atacggatat taagccaact tacgaagtgc
     1621 atacgatgca acagattatt gcgattgtag aggggaaatc attatgaagc tacaacagtt
     1681 acgttatatc gttgaaatag taaaccagaa cttgaatatt accgaggccg cagaggtgct
     1741 ttacacttct caaccgggga ttagcaaaca agttcgtttg ttggaaagtg agttgggaat
     1801 taatattttt gagcgtaacg gtaagcacgt taaggggcta acgcctgctg gtgaaaaaat
     1861 tgtggcgatt gctcgtgaat tattggtaaa agcccagagc attaaatcgg ttgctgaaga
     1921 acaaactcga cccaacaaag gcatcttacg cattgcgacc accaataccc aagcccgtta
     1981 tatgctaccg agtgtaattg agaagtttaa ggctcgctat cctgaagtaa gtttgcattt
     2041 gcaccaaggc tccccgaatc aaatttatga tgctttggtg gctggagaag tggatttagc
     2101 cattaccaca gaagctcaat atttatttga tgaagcggtt ttattgccgt gttattggtg
     2161 gaatcgttca gttattgtca aaccagagca tcctcttgcg gcttttgtga accaaagtaa
     2221 aaatttgact gtcgaacaat taggtagata tgatttgata acctatactt ttggttttac
     2281 agggcaatcg gatttagatc atgccttcaa taaggaaggt attttgccta atatcgtatt
     2341 tacggcgaca gatgctgatg taatcaaaac ttatgtacgc ttaggcttag gggttggtat
     2401 tatggcatca atggcacata cggaaacgga taaagactta gtcgctatca atgcaagtca
     2461 cctgtttcaa ccgagtatga cgcaaatcgc ctttaaacga ggaacttttc ttcgtaacta
     2521 tatgtatgat tttattaatt atttttcgcc acatttaaca cgggtacaag tggagaaagc
     2581 ggaacaatta cgagataaca atgcaatttc aaggttgttc gaaagtatat ctttagagga
     2641 gaaatagatg agaatttggc agaagttagc gagcgtaatc gtggtcactt tgggcttgat
     2701 ttcaaacgcc agtgcggaga attttaagtt gaaatacagc tcaaattatt taatgccagc
     2761 ctacattaac tttaataacg gtggtggcca atataatatt caggcaaaaa ttaatgtgcc
     2821 tttatataat attgtctttt ctgcgaaggg aacagaaaaa aacgaacaat ttcatatgtt
     2881 gagctaccga gatacccgta acggcaaaac ttatgcgatg gcagaaattg attctaaaac
     2941 ggtaaaatat ggcaaagtga aagagccact aaaagaagaa gcgctgacta tgccaactta
     3001 tgatttgttc accacagcct ttcagttgag ctattacgat aaattaccga gcagttttca
     3061 aactactaac ggtaaaaaac tttacccaac accgaatgtg cagctacgca aagcccaaaa
     3121 agaggtaaaa gtaggcggca aaacctacca agaaattacc tacaagttta gaaccagtga
     3181 taaaaaagac attacggtga aaaaatttga aggtgaaaaa ttccctcgct atatcgccta
     3241 tagtcgtgat ggcgacaatt atgagctaac ttttgatagc tttgtaaaat aataaagatt
     3301 agtaatgaga caagcggtct attttgtgat ttgttttgca aaatagaccg cttgttattt
     3361 actttttaga aatcttcaaa atattgttga atagttttta tatcatttgt ttgtgttaag
     3421 gcgagctgca gtaatactcg agctttttga ggatttaatg tgccggaagc aataaaacca
     3481 tacttgctat catcaatttc tgcatctcgg gtagtatatc cggttggcac tcgagacgag
     3541 cgaaccacgg taattccttt tttagctgct tcttcaagta aagccaaatt agccgcattc
     3601 atattgccat tgccaactcc tgcaaccacg atgccttgat aactcgcatc taataatgct
     3661 tgaagcggtt cggttggcat atttgaataa gcataaataa tgccgacttt tggcaattcc
     3721 gttaattcat ctactttgaa aggggtgttt acggtgtgtt tactttcagg agagcgctca
     3781 taatcaactt tgctattatg gatatagcct agtgcgccaa agtttggtga gttaaatgtt
     3841 tgcactgatg tagtactggt ttttgtaaca tcgcgagcgc ccaatacaat atcattcatt
     3901 gcaaccaaca cccctctgcc actagattta gaatctttgg cgacaacaac tgagttatat
     3961 aaatttaata cgccgtcggc acttttttca gttgctggtc gcatggcccc cactaatact
     4021 acgggttttt cgcattttac agtcatatca aggaagtata cggtttcctc catagtgtct
     4081 gtgccgtgcg taataacgaa gccatctgtg tttgggcatt gttgattaat tgcttttgcc
     4141 agttttagcc atacttcatc agacatatcc tgagatccga ttttaacgat ttgttctcct
     4201 ttgatatttg ctaatttttt aatatccggg acggcttcta tgagtgtttc aatatttagc
     4261 tgcccagctt gataagctga ggttgccgta tttttttggc taccggcaat tgtccctcca
     4321 gttgcaagaa ttgtaatatt aggtaggtcg gctgcttgaa ttggcatagt agcaatgctt
     4381 aacagagttg gcagtagtaa ttttttgatt ttcattgtat cgtctccagt attagaaaaa
     4441 caggtattat gatatctata aacatgtagg ttaattctga tctatcgcaa ataatagtgt
     4501 attaattaag attagtcggc attattgaaa aaagaattaa tctgactgct tgccgatttt
     4561 ccattagcaa aaaaatgtaa tttgatgtaa actactttcc cgtcctgata gtttcttttt
     4621 tacgaagtaa actgatattc tgaatttcca acctaatcaa tcagcaaagg caatcacaat
     4681 gacaacgaat tatattttcg tcacaggcgg tgttgtatct tctttaggga agggtattgc
     4741 ggcagcctct ttagcatcta ttctggaagc tcgtggttta aatgtaacca ttatgaagct
     4801 tgatccttat atcaatgtcg atccgggtac aatgagtcca actcagcacg gggaggtatt
     4861 tgtgaccgaa gacggtgcgg aaaccgattt ggatttaggt cactacgagc gttttatccg
     4921 ttcaaaaatg agcaaagcca acaactttac cagcggtaaa atttactctg aagtgttgcg
     4981 taaagaacgc cgtggcgact atttaggtgc aaccattcag gttattccgc atattaccaa
     5041 cgagattaaa gcccgtgtgt tagaaggcgg taaagggcgt gatgtcgcca ttgtagaagt
     5101 aggtggcacg gtgggggata ttgaatcact gccattctta gaagcactcc gccaattagc
     5161 ggtggatatc ggtcgtgaaa aaaccttgtt tatgcattta accttagtgc cttatattcc
     5221 aaccgcaggg gaagtgaaaa ctaagccgac tcagcattca gtaaaagagt tgctttcaat
     5281 cggtattcag ccggatgtgt taatttgccg ttcagatcgt gctattccgg aaaatgagaa
     5341 gaaaaaaatc gcccttttct gtaatgtgcc ggagcgtgcg gttatttcgc ttaaagatgt
     5401 agattcgatt tatcgcattc cggaattatt gaaatcgcaa gggttagatt cctttgtgtg
     5461 cgatcgtttc cgtttagatt gcaaagaagc cgatctttca gagtgggaac aagtgctata
     5521 ctgccaagca aacccaaccg gcgaagtgac tatcggtatg gtcggaaaat atgtggaatt
     5581 acctgatgcg tataaatcgg tgaatgaggc tttgaaacac gcaggtttaa cgcatcgttt
     5641 aacagtgaat attaaataca ttgattcaca agatattgaa accaaaggca cagagttatt
     5701 ggcaggctta gacggcattc ttgtgccggg cggctttggc tatcgtggcg tggaaggcaa
     5761 aattcgaacc gcacaatatg cccgtgaaaa caagattcct tacttaggta tctgtttagg
     5821 tatgcagatc gccctaattg aatatgcccg taatgtggca ggtttaaccg aggcaaattc
     5881 ttctgaattt gataaagatt gctcacagcc ggtgattggc ttaattaccg aatggcaaga
     5941 tgcggaaggg aatgtggaaa cccgcagcga tgagtcagat ttaggtggta caatgcgttt
     6001 aggctcacaa caatgccatt taattgaagg ctcaaaagct cgtgagttat atggtgcgga
     6061 aacgattgtt gaacgtcatc gccaccgtta cgaagtaaac aataagctgt taccacaaat
     6121 tgaagcggca ggcttaaaag tgagcggttt atcggcagat cgtaaattag tggaaattat
     6181 tgaagtgcca aatcaccctt ggtttatagc agcacaattc catccggaat ttacctcaac
     6241 tccgcgtgat ggtcatccat tatttgcagg ttttgtgaaa gctgcgaaag atcaccaaga
     6301 gagtcgtaag gcttaatcaa acttaacaag cggtcgaatt tactcatttt tttgtacaaa
     6361 cgcttgcgtt tgaacatcgg ctttgctgat ggcacgaagt gcgagcgaaa gcgagtaaat
     6421 ttgaccgctt gctcattaat tataagaaag ggataaatca atgatttatc ccttttagta
     6481 tttttaatag taagaatgtt caccgtgttg gtgttcggta atatctttca caccaactaa
     6541 ttcatcaggg aacattgcca gaagctgttt ctcaattccc tcttttaagg tcacatccac
     6601 cattgagcaa ccgttacaac caccgccgaa ttgtagcacg gcatatttat cttcggtgat
     6661 ttcaattaag gtcactttac cgccgtggct ggcaagttgt ggattgactt gggtttgaat
     6721 cacataatct aaacgctcga taaacggtgc atcatcagcc actttacgca ttttggcgtt
     6781 aggggctttg agggtaagtt gtgaacccat tgggtcggtt acataatcaa tttccgcttc
     6841 gtctaaaaac ggtaagctaa tatcatcgac aaatgcagag aaacggttaa atttaaattc
     6901 ggtatccgtc tcttcaactg cattgggtgg gcagtaagag acaccgcatt ctgcccccgg
     6961 tgtgccggga ttgaccacaa aaatacggat attagttccc tcttcttgct gttctaatag
     7021 tctggcaaaa tgggcttgtg ctgcatctga tattgaaata tgaat
//
LOCUS       DANLXB010000134         7036 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLXB010000134 DANLXB010000000
VERSION     DANLXB010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7036
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..857
                     /gene="araC"
                     /locus_tag="PXD41_001911"
     CDS             <1..857
                     /gene="araC"
                     /locus_tag="PXD41_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL6289417.1"
                     /translation="KNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGYML
                     QLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPKWN
                     KWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLLMK
                     CISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSLGI
                     SLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFRTL
                     ERRKDSEM"
     gene            1044..2018
                     /locus_tag="PXD41_001912"
     CDS             1044..2018
                     /locus_tag="PXD41_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6289418.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            2073..3563
                     /locus_tag="PXD41_001913"
     CDS             2073..3563
                     /locus_tag="PXD41_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6289419.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            3547..4506
                     /locus_tag="PXD41_001914"
     CDS             3547..4506
                     /locus_tag="PXD41_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289420.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            4509..5459
                     /locus_tag="PXD41_001915"
     CDS             4509..5459
                     /locus_tag="PXD41_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289421.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            5472..>7036
                     /locus_tag="PXD41_001916"
     CDS             5472..>7036
                     /locus_tag="PXD41_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL6289422.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVV"
BASE COUNT         2098 a         1361 c         1410 g         2167 t
ORIGIN      
        1 ataaaaacct ttctttgctt tcaccgactt atccatttga ccttgaattc atcgccggtc
       61 ttactcaatg tgagaaaggt aactatcttg attctattgt cgataggcaa caaggaatgc
      121 acggttatat gcttcaatta accacttttg gtcgtggttc tgtttttgat ggtaagcacg
      181 tttttaccgc tcatcgaggg cagttactcc tctttacacc caatgccgtt caacactacc
      241 accgtcaccc ggaaagccaa tattggcact acaaatgggt ctattttcag ccgaatccta
      301 aatggaataa atggctgaat tggtcagata tggaagaaaa aataggacgt atcaccatta
      361 gcgatgatcg ttactttcag gaaattagcc aacttttcag taaaattgaa ttagaactta
      421 aatccagtaa attttttaaa gaagatattg caacaagttt gttggaatac ttacttatga
      481 aatgtatttc cgccgagaaa attgaggtta ttcctgtcat tgatcaacgc attttgacag
      541 tttgtgattt aatcttaacg aatttggcta aaaatgagag cttagaagca atggcagaaa
      601 aagtattttt atcgccatct cgcctctcac atcttttcaa gcaatcgctg gggatcagct
      661 tagtgcaatg gcgggaatta caacgcattt ccgaatccaa aaaattgctt tatttctcta
      721 acatctctat ctctaatatt gcgaaatcct taggctatga ggattctctc tacttttcca
      781 aaattttcaa aaagcatacc gggctgtcac cctctgagtt tagaacctta gaacggcgta
      841 aagacagtga aatgtgatct tgatctcact ttactttgca tagcagaatt ttccatatcg
      901 ataacaaaaa gttacctgtt tttctctcat tcaaaagcat aagatacaaa cagctttaat
      961 agtgctgttt ctattagaga agggatatca agctctgtga gtgatattca gtgaaataac
     1021 ttcttatgta tgagggaaga acaatgaaaa aaccaacgtt caagcacgca ttattttcaa
     1081 gtattttagc tttagcctgt tacggctcgg catttgccaa tgatgttgtt aatatctcca
     1141 aaattgacgg tatgccgtgg tttaatcgta tggcagaggg tgttgtgcaa gcaggcaaag
     1201 ataacaatat caatgcttat caagttggtc catcaaatac cgatgcacca caacaagtaa
     1261 agttaattga agatttaatt gcgaaaaaag ttagtgctat ttccatcgtc cctaacgatg
     1321 caaatgcctt agaaccggta ctgaaaaaag cgaaacagaa cggtattgtg gtattaacca
     1381 atgagtcagt cggacaacct agtgccgatt gggatattga aattatcgat aatgcacaat
     1441 ttgcagcaga ctatgtagaa gaagtagcaa aagctatggg cggaaaaggc ggctatgtga
     1501 tttatgttgg tggtttaacc gtgcctcaac ataatctgtg ggctgattta ttcgtgaaat
     1561 accagaaaga gcattatccg gatatgtttg aagtgaccag cagaatgcct gttgccgaaa
     1621 atattaatga tgcacgccgt accaccattg atttagtgaa agcccattcc gatcttaaag
     1681 cggtcgtttc ttttggttca caaggtccta ttggtgcagg gttggcagtg aaagaaaaac
     1741 gcttaaaaaa taaattaaat gtcttcggaa tgatgattcc ttcccaagca gccaatttaa
     1801 ttaaaagcgg tgatattaca atgggaatta cctatgaccc ggccaatgca ggttatgctt
     1861 tagctgctgt cgctgccaaa gtattaaaag gcgaaaaaat tgaggatgga ttagagatcc
     1921 caacggtcgg taaagccaaa gtagatagtg agaaaaaact acttcaattc cacaatgtgc
     1981 tgaaagtcac caaggaaaat atcgataaat tatattaatt tgcttgaaat atgggctgat
     2041 agccagccca tattttccct caggaggcac ttatggcatt tatttcgatg cggcatatca
     2101 gtaaaacatt ccacggcata aaagcattaa atcaagtcaa tctctcatta gattatggcg
     2161 aagcactttg tcttgccggt caaaatggct gtggaaaatc aaccttgatc aaaattcttt
     2221 ccggcgttta tcaaccggat aaaggggctg aaattcaaat tggtgcaacc caatatacca
     2281 agctgacacc acaggaatcg attgataaag gtattcaagt gatttatcaa gatttagccc
     2341 tcttccccaa tttaaccgtg gcagaaaata ttgccattaa cctgcaccga aaatttggct
     2401 gggtgagtca agatcacatt catcaggttg ccctcactgc tattcaaagc attaatgcaa
     2461 atctagacct gaatgcaata ttagaagatt taccgatcgc tcaacaacag ttagtcgcta
     2521 tttgtcgagc gttagcacaa aatgccagat tattgattat ggacgagccg actgcctcac
     2581 ttactgcaaa agaggtcaaa gatctgttag atgtcgtcat caaacttaaa agcaaaggca
     2641 ttagcatcat ctttgtcagt cataaattgc aagaagtaat gagtgtttcc gatagcgtat
     2701 tagtgctgaa agatggcaat atggttgggc aatatcctat ccgtgaaatg aatgaaaaac
     2761 gccttggttt cctaatgact gggctggaaa tcgattacaa gcggttagat ttgccggatt
     2821 ttttgcaaag aaaaaccgta ttggaagtcc gcaatttaac gctgcctcat cagtatcaag
     2881 agattaactt ttcgctacga gaaggggaaa ttgttgccct tacaggattg ctcggttcag
     2941 ggcgtactga gctttgccta agtttattcg gcattactca accacaatcc ggcgatattt
     3001 tattaaacgg tgaaaaagtg atatttaaca ctaaccgtga tgccattgcc aaagggattg
     3061 cttatgtatc ggaagataga atgcacaccg ggctgattat ggcagagtcg attcatcaca
     3121 atattatttc gactattttt cacaaaatca ccgataaatt acagattatt caatcctcga
     3181 aggcttatgc aagtagccaa gccttgattg attcattaaa gattaaagta tccgattcag
     3241 atttgcctgt taataccctt tccggaggga acgcacagcg agtttcgatt gcaaaatggc
     3301 tggcaatcga ccccaaaatt attattttag atgccccgac tattggggtc gatatcgcca
     3361 ataaagaagg gatcttccaa attattaaat cattggctca gcaaggcatt gcagttattt
     3421 ttgtgactga tgaagtggaa gagacctact acaacagcca tcgggtaatt gtaatgaaaa
     3481 aaggtcgcat tgttgatgaa atcttgccgg catattccag tgaaaaatcg attgcggagg
     3541 ttatttatga aaatcagcaa taatcatatt ctttccagta cgttactgat tttaatccta
     3601 ttattaaccc tatttactcg tgattttgca actattgaga acctttatga tgttgtaaat
     3661 aattacgcaa tgttaatgat tttagcttgt ggtttatttg tggtattgct gtctggcggc
     3721 attgatattt ctttccctgc tatcactatt atttcccaat atgttatggt cactctgatc
     3781 ggtaaatatg atgtaggatt tgccggcgtt tttgttattt cttccaccat cggcatatta
     3841 ttaggtttta ttaatgctct atttgttaat cggcttagtg tcccttccat tattattacg
     3901 atctcaacac tcaatatttt ttatggcgga ctactctatt ttaccaaagg tgtatggctt
     3961 tatgagtatc ccgaatggtt tacccaagaa atcgtgttct ttaaacagat aactgctgag
     4021 ggagtggaat ttggattatc gtttcaagca ttaatggcta ttttggcggt gatattaacc
     4081 ggcttaatta ccaataaact cactattggt cgaaaaattt acgctcttgg tggtaatccg
     4141 gatgcaacct cccgtattgg gtttaatctc ttatttctcc atctatttgc atacggttat
     4201 atgggcttta tggcaggctt ggcaggcata gtgcaatctt ataccgtaca atctgtcgca
     4261 ccggattcac tactgggtta tgaattaacc gtcctagctg ccgttgtatt aggtggtgct
     4321 agtttatcag gtggtagagg caccctgctt ggtacagtaa tgggcgtaat gttactggcg
     4381 attattcaaa acgggctaaa tttaatgaat gtatcgtctt actggcaaac cattattacc
     4441 ggtatcatca ttatcttaag tattagtgca acagccttaa gtcagcggaa aaaacaagga
     4501 gcataacgat gaaaagtaaa ctggatccaa cgattttcta tctcttagca ctcttcgcag
     4561 ttgcagttat cgcctttagt attttcattc cggatatttt ttggtctgtc agtaactttc
     4621 aatctatggc atcacaaatt ccagtattag gtattttaac cctagcaatg gcattaccga
     4681 tgttaacagg tggaataaat ctttccatta ttgccggaat gaatgcttgc tcattaatta
     4741 ttgcctactt tattacgcaa tataccggta tttcttggtt atttattgct attttattaa
     4801 gcctttgctg tgccttagcc attggattac tcaacggcac attaattgcc attattcgtg
     4861 tttcaccaat tttggcaacc ttaggcacaa tgactttaat taacggcatt aatattctag
     4921 tcactaacgg ttcaaccatt gcgaactttc cggaaacaat gttgagtatt aatgcttcag
     4981 cctttttatg gattccgcta cccattctaa tctttctctt tcttgctggg ctgatttggt
     5041 ttttcttaga aaaaactgca atgggtaaag cggtttattt catcggcaat aatgaaaaag
     5101 ccacctatta ttcgggtatt aataccaaaa aagtgctgat ttgggtttat gttatctcct
     5161 caattctttg tgtatttgca gctattttga tgatgtctaa actcaattct gcaaaagcct
     5221 cttatggtga ttcctatttg ttgatctcca ttttagccgc agtattgggc ggtattaacc
     5281 ctgatggagg taaagggaaa ctattaggga ttatgctcgc cttagtttta ttacaagtga
     5341 ttgaaagtgg cttaaatatg ctcggcatta gcagttacat tacaatgatt ttatggggaa
     5401 gcttattgtt attctttatc ttcctccaaa aaaatcgcct tttccgacta acacagtaat
     5461 ggtggtagat tatgcaaaat gaaaaacaac tcattgaaca aggtaatact gttattggta
     5521 ttgaattggg ctcaacccga attaaagcgg tgttaattag ctcagatggg acgattttag
     5581 caaccggtgg ggcggattgg gaaaatcgac tgattgacgg tatttggacc tatcatcaaa
     5641 atgaaatatg ggaaaaacta caagctgctt atatggattt aagcaagaca gtcaaagaaa
     5701 aatatcacac aaccattcgc acagccaaag cattgggaat tagtgcgatg atgcacggct
     5761 acttaccttt cgataaacac ggaaatccgc tggttgcctt tagaacttgg cgaaacaaca
     5821 ttaccctaac ctcatcggaa aaattgaccg cactctttca atacccaatt ccgcaacgtt
     5881 ggagtattgc tcatttacac caagcattgc ttaaccaaga gcctcacttg ccggaaattg
     5941 attacctgac aaccctctca ggttatgtgc attggcaact gaccgatcac aaagtgttag
     6001 ggattggcga tgcttccggc atgttcccga tagatactga gttgaaatcc tacaatccaa
     6061 caatgctggc tcaatttgat cgagccattg ccgactaccg tatgccttgg aaattggaag
     6121 cgattttgcc acaagttcgt gttgctggtg aacaagcggg caaattaacc gaaaaaggtg
     6181 caaaattgtt agatccaacc gataatttgc aagctggcat tccactttgt ccacctgagg
     6241 gtgatgccgg aacaggtatg attgcaacca actgtatcaa agaaaaaacc ggtaatattt
     6301 ctgccggcac ctccgcattt gcaatgattg tgttagaaaa agccctatcc aaagcctatt
     6361 cagagctgga tattgtgacg accccggcag gtaaattagt ggcaatggct cacgctaata
     6421 attgcacctc tgatattaat gcgtgggtga atttattcgg cgaatgctta tcggtttttg
     6481 gcgtaaatat ctgcaccgaa gaactttatg aaatgttatt tctccatgcc ttgcaaggcg
     6541 atgcagattg tggagggcta ttatcctacg gcttccactc cggtgaacat aatgtcggtt
     6601 tatccgaagg ctgtccggtt ttcttgcatc caacgaatgc ccattttaac ttagcaaact
     6661 ttatgcgaac ccatctctat accgcttttg gtgcaatgaa attaggaatg gacattctca
     6721 ttaaccaaga aaaagtggaa atttcccgta ttctcggtca cggtggtata tttaaaacag
     6781 aaggtgttgc acaaaaaatt ctgtcttccg cactgaatat tccattggct accgcaagta
     6841 ctgcttcaaa tggcggagct tggggaattg cattactggc agactttctc agcgtatcag
     6901 accgttacag tttagaagaa tatttagata attgcatttt caacaccacc aaactcaatc
     6961 tggttcaacc ggataaaaca atgagtgaag gttatgaacg ctttatgcaa cgttataagc
     7021 aaggcattcc tgtggt
//
LOCUS       DANLXB010000135         7017 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLXB010000135 DANLXB010000000
VERSION     DANLXB010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7017
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1245)
                     /locus_tag="PXD41_001917"
     CDS             complement(<1..1245)
                     /locus_tag="PXD41_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6289423.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNK"
     gene            complement(1345..1749)
                     /locus_tag="PXD41_001918"
     CDS             complement(1345..1749)
                     /locus_tag="PXD41_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL6289424.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            complement(1742..2964)
                     /locus_tag="PXD41_001919"
                     /pseudo
     CDS             complement(1742..2964)
                     /locus_tag="PXD41_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            complement(3051..3470)
                     /locus_tag="PXD41_001920"
     CDS             complement(3051..3470)
                     /locus_tag="PXD41_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289425.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            complement(3532..4221)
                     /gene="rplA"
                     /locus_tag="PXD41_001921"
     CDS             complement(3532..4221)
                     /gene="rplA"
                     /locus_tag="PXD41_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL6289426.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            complement(4226..4654)
                     /gene="rplK"
                     /locus_tag="PXD41_001922"
     CDS             complement(4226..4654)
                     /gene="rplK"
                     /locus_tag="PXD41_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL6289427.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            complement(4887..5450)
                     /gene="nusG"
                     /locus_tag="PXD41_001923"
     CDS             complement(4887..5450)
                     /gene="nusG"
                     /locus_tag="PXD41_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL6289428.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            complement(5452..5865)
                     /gene="secE"
                     /locus_tag="PXD41_001924"
     CDS             complement(5452..5865)
                     /gene="secE"
                     /locus_tag="PXD41_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL6289429.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            complement(5978..7000)
                     /locus_tag="PXD41_001925"
     CDS             complement(5978..7000)
                     /locus_tag="PXD41_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6289430.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPNKLV
                     IRDSAA"
BASE COUNT         1929 a         1569 c         1372 g         2147 t
ORIGIN      
        1 tttatttaat gtcgccataa tatcctgcgt aaaaatttct tctattcgtt ctaatgccct
       61 taatgtccga tgttcaatat tattttctaa aatcagtctg accgcatttt cattgggttc
      121 aaagtaagaa ggtgtattaa gttggtaagc gttcatttcc tccgccatac gattaacacc
      181 ttcattcagc tctttgaccc aaccaaattc atacagcact cgtgcaatct tcggattgcg
      241 tgaaaaacgg gtatagtaca tattttcaag cgtcacaggg cgaggtaatc cacccggact
      301 aaaaatttcc aaacggtcat caaacatcga aatgcgaatg cagtcccctt gattactgta
      361 actacggtgt gcaatcgcat tgacaatacc ttctaaccaa gcaaattctg gatactcatc
      421 aatttttgtg aattgcccgt tttcatctaa acgttggaac tctcgtaatt ggctttttaa
      481 tactgcctta gcactctcca ataacttagg aataggctct tcaagcataa attctttgac
      541 gacattaaaa gttctaccgg tcagaggtgc tttaccttca taccgcaaaa aacgcaaacg
      601 ggcattagga aaataacgtg tcgggttatt cccaaatagc aaaatacagg cattcgtaat
      661 ttgcccttct ttgttaatta aatctcgggc tttcagaatc tcttctattg agcgatctgt
      721 gtgtaatttc tgtcgatact gttctaataa atccatatcc agatcagtaa aatcagcgcg
      781 tgctatcggt tgctcttcaa aagcacgctg ccctttttcg tactctaatt gcaaacgttg
      841 ttcaaaattg agttccaaag tttgatcttt tgagcgtaga aaaacccgat catcgtgaga
      901 ggtaatcacc ctcccactcg aagctgtaac ttcaaataat aagacaaaat ccgctaaacc
      961 tcgactattt accacctcaa tttgctgata ggtcaccggt atcggcattt tttgtaaatt
     1021 gtgcagagcg tggataaatt cttccggctg atgggctttt tggtagttaa aaccggtaat
     1081 ttcgccatta tcttcaatac caataactaa taaaccgccg tctgcattcg caaaaccaat
     1141 caaatgccgc aaaatctctt tcggttcttt tctcgcactt ttgcgatcaa aggatttatc
     1201 ttctttgcga gtacaaagat gttgaatgtc ataggcctct tgcataacga atttcctacc
     1261 aactactacc aactactacc aactactacc aactactact tactactact tactactact
     1321 tactactact tactactacc aactctattt cggactaaac acattcagcg ccccttctaa
     1381 aagcacttgg ttgtcggcta aatcgatcag ttggcagtcg aatacgccga agccggtggc
     1441 atcttgaata gacattttga tctgaatttg tagctgtgag ccaatcggga tttcttggcg
     1501 gtggaggtgc agtttgcgag tgccgagcag gtagcctaag cgaactggtt cgccggcttg
     1561 tgccataatt tcaatgctgg cgtaggtggc aagttttccg tgtttgatca gcggattgtc
     1621 agggcgaata ttggtttcag cggtcaaaaa atcctcgccg aatgcggtaa tgcggtcgag
     1681 taggatcata ttgccactgt gaggaaccaa tggtgcaatt tgttcgatag ggaaggtgaa
     1741 tttatgcatc gctttctccc aaaatcagta cgctgttatt gccgccaaag gcaaaagagc
     1801 tgcttgcgcc aatccgtctg cctgctgccc aacggctctg ttcatcggtg atcgcaatgt
     1861 tcggcaggtt ttcgtccgct tgtttatccc ataattgcgc agggagcttg ccggtcgggt
     1921 tgtgttggcg acagagcatt ccccacaaaa ttgccgcttc caccgcaccg gcagcccaag
     1981 ggtatgcccg gtgtagggtt tggtggtggt gcaagcggtc tgattaccga agatttttgc
     2041 cacagcgagg ctttccattt gatcgttatg aagcgtccct gtgccgtgca ggttgatcca
     2101 gccgatgtcg gctgcgtcta aatcagcatt gtgcagggca ttttggaaag cggaaattgc
     2161 cccttcccct tcggggtgag gtgaggacat atggtaagcg tccgagctgg aaccataacc
     2221 cagtaactga atgcgatgtt cgtccagtgg ttcacggctc atcacaaaca ccgctgcgcc
     2281 ttcgccgatg ttaatgccgt tacggttagc ggaaaatggg ttggtttgtt ggtttgataa
     2341 cacttccagc gagctaaatc cgctgatagt taaaggcgaa agggtatcca caccaccgca
     2401 aatcaccgca tcgcacaagc cggctttcag taaacgggca gcagaaatta acgctcttgc
     2461 ctctgaggtg caggcggtgg aaatgccgta actcagcccc gttaagccat acacttcggc
     2521 aacgaaatca gacggcgcag agaagagaat ttgctgttga ttaaactgct cggtggcata
     2581 atcgccctgc acaccggctt tgaagacggg aatattttca tcggcgccgg tagtggacgt
     2641 gccgatgatc accgcaatcc gctcacgccc gaattgctcg atacaagcgg taattttcgg
     2701 ctcaatttct gcaagggcgt gccatagcag ttggttattg cggctgcggt gttcaataga
     2761 tagttcaaca ggaaaatcac gcaatctagc agagacttgc cctagaaatt tcggtgaact
     2821 atttgaaata ttatgtcgta aataaggctg tgaagtcgta tctaaaggag atactttcgc
     2881 attaattaaa acattcaaat gctccacgat gccatatcca atcggactgg tgatggcggg
     2941 ctctgataaa tatagtgtca ttattattta ttccagtatt attgtgtaat ggcactaaaa
     3001 ttataaaatt catattcaag tgattcaagc atagaggttc aagttttcgc ttattccccc
     3061 aatatttcca ctttccattt actgctatct ggtagccaaa tcgtaaattg ggatttttcc
     3121 ctctcaattt tccaaccttt atctaaataa aaaggtggag aatgagggtt taatgcattg
     3181 actaaagctg taaataatag ctgtgcctgc ttatttggca ttacaaagcc atctggctcc
     3241 caaccttttt tagtaagcca tactctggca ataggagcac ctaaaggatc agtttgaatc
     3301 caacgccatt tattttcata aaattgaatt agaagcaaac tttgctggcc attattttca
     3361 actttaaagg attttacaga ttcaacctgt ggcggtaatt gcttaatttg aggtaataca
     3421 gtacaagcac taagcaaaaa aataaagcaa aaagataata atcttaacat tcgtacctaa
     3481 agaaaaagac cgtagagtat taacactacg gtcttttgat tctattaaaa attaaagtga
     3541 tgcttgatca accgcaacac cagcacccat tgtagtagag atgcttactt tcttgatgaa
     3601 gatacctttt gctgttgttg gttttgcttt tgttaaagca gctaacaatg cgtttaagtt
     3661 atcttttaat tgttcagctg agaagtctgc tttaccgata gtagtgtgga taataccgtt
     3721 tttgtcgtta cggtagcgga tctgaccaga tttcgcattt ttaaccgctt ctgcaacgtt
     3781 tggtgttact gtacctactt tcgggtttgg cattaagccg cgtggaccta atacttgacc
     3841 taattgacct acaacacgca ttgcatctgg agaagcgata acaacatcaa agttcatttc
     3901 gcctttcttg atttgctctg caagatcttc catacccact aagtcagcac ccgctgcttt
     3961 tgctgcttct gcgtttgcac cttgtgtaaa cacagcaaca cgagcggtac ggcctgtacc
     4021 gtgtggtaat acggttgcac cacgcacgtt ttggtctgat ttacgagaat cgatacctaa
     4081 gtttacagca acgtccacgc tctcaacgaa tttagcggtt gcgaattttt ttaacacttc
     4141 aactgcttcg ttgatgtcat aagctttagt agaatctacg ccagctttaa ttgctttcat
     4201 ttttttagtc aatttagcca ttgtattatt cctctacgat taagcccatt gagcgagctg
     4261 taccagcgat tgatttcatt ttggtttcga tagtcgcacc agtcatatct gctgctttag
     4321 tttcagcgat ttgacggatt tgctcttgag ttactgtacc cactttatct ttgttcggtt
     4381 taccagaacc agatttgata cctaccgctt ttttcagtag cactgccgcc ggtggagttt
     4441 tggtaacgaa tgtgaaagat ttatcagcgt aaactgtgat aacaaccgga atcggtaaac
     4501 ctttctctaa gctctcagta cgagcgttga atgctttaca gaattccata atgttaacac
     4561 cttgttgacc taatgcagga ccaaccggtg gtgatgggtt agccataccc gctgcaactt
     4621 gcagtttaac gtaggcttgg actttttttg ccattttaat tttcctctaa atgggtgata
     4681 acgctgaaaa tcagctcccc tgttacataa aaaatacgag tcagcaggct ggctcgtaat
     4741 aggtcgcaaa ttttaaagaa tttgcgacta tttttcaagc aaaactttcg ctttgttgaa
     4801 taaatcttgt tacaagcggt cttttttccg ctgaattttg caaaaaattg agaaaaataa
     4861 ccgcttgtgt gtgaaattaa ttgaaattag ctctgctttt ccacttgact gaattctaat
     4921 tctaccggtg tcgcacgacc aaaaatcgac accgatactt ttaagcgacc tttttcgtaa
     4981 tccacttctt cgaccgtacc ggagaaatct gcaaacggac cttctgtaac caaaatgctt
     5041 tcgcccggtt ggaattcttt tctgtggcgt ggtttttccg ctgtttcttg tacacggttt
     5101 agaatgcggt ctgcttcacg tttggtaatt ggtgcggggc gatctgccgt accaccaata
     5161 aagcccatta cacgaggcac acttttcact aaatgccaag tatcgtcatt catttccatt
     5221 tcaaccaata cataacctgg gaagaattta cgctcggttt tacggcgttt accgcccaca
     5281 ttttcaacga cttcttcggt tggcactaat acttcaccaa actgctcttc cattttgtga
     5341 agcttaatgt attcacgcaa tgttactgcc acacggtttt caaagcctga aaacgcttgt
     5401 aatacatacc agcgttttga gccattttct ttcacttcta cttcactcat tttagaacct
     5461 taaacttgtt acaaatgtaa ttaatgcgac gatgattgag tcaatacccc ataaaaccaa
     5521 ggaaactact acgcacattg ccaatacaat caaggtggtt tgtgttgctt cagggcgtgt
     5581 cggccagata attttgcgta gttcggttcg agactcttta ataaaatgaa ttgccttttg
     5641 cccctgattt gtaattgccg ctagtgcaac agcaccaact agcaacacca ccaataaaag
     5701 cactcgaaca attaatgaaa aatgagatga aaaataggca ttacctaccg cagcaactgc
     5761 taaaaataca atcgcaacca gccataatgc tgtatttgca cctttgcttt tccccccttt
     5821 ttgttcgact tgctcggggg tttttgtttt aatctcagta gccatatata acctaaaaaa
     5881 tgaataaaaa aatcagaaat tattttaaag cgttaaattc tatcattttc tacaagactt
     5941 gccacgatct tttatagatt tttatgcaaa atcaatatta tgcggcgcta tcacgaatca
     6001 ctagcttatt cggtaattta acaatcatct cttctgctga taaggtttta ccactcaaaa
     6061 gagtaagtag ttgtttacct gctatttttc ccatttgctc gtaagggatc gcaatggttg
     6121 tcaatttagg gtaggaaata ctccccactt ctaaaccacc taaaccggca atcgcaagat
     6181 cttttggaat gctcatatgt cggcgtaatg cttcatataa tgctccgcaa gccaattcat
     6241 cggataaaaa aaccaatgca tctattgctt cccaatttag aagggcttca gtcaacaaag
     6301 ttgctcctgc cgaaaacgaa atatcctcta ctacgtggtg gatttttaaa ggagaaatat
     6361 gatgtgcaaa taaagtcgta tgccaacttt ctaaatattg tttgaagatg gataaatctt
     6421 gcttcgccga taacaatcca atctctcgat agcctttttt caccaaaaaa tggatcattt
     6481 tctccattgc ttcgtggcta tcaattccaa cactgagatg aatcggttct ttttttatcg
     6541 cacctatttc tacggtaggg atattgctgt ttttaatcca ctcacggaca ttaggagggc
     6601 aatctaaatt caaaaacact atcgcttgag gagcatgatt aatcagttct tgaaaccaag
     6661 attcttgatc agcgatcaaa atcaccattt gcaatgcgga atccgccacg cttttgcgta
     6721 atgccgataa aattaaggta ttttccgttg agctaatcga cgtcgtcaca atgaccaaat
     6781 tatgtgattc tgcagaagct aattgccgag cagaaaaatg cggaatatat cctagttcaa
     6841 tgattgcctc ttcaatccgt ttacgtagtg gctccgacac catttctggt gtacgcaaag
     6901 cacgagatac cgtcatctgc ccaacaccaa caactttggc tacatcagct aaagtgactc
     6961 tgcccgaaga tcttcgattt ctacttgttc catttgccat actattttcc taattgt
//
LOCUS       DANLXB010000136         6996 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLXB010000136 DANLXB010000000
VERSION     DANLXB010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6996
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            21..1283
                     /locus_tag="PXD41_001926"
     CDS             21..1283
                     /locus_tag="PXD41_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL6289431.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            1428..2204
                     /gene="deoC"
                     /locus_tag="PXD41_001927"
     CDS             1428..2204
                     /gene="deoC"
                     /locus_tag="PXD41_001927"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL6289432.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            2225..2944
                     /gene="deoD"
                     /locus_tag="PXD41_001928"
     CDS             2225..2944
                     /gene="deoD"
                     /locus_tag="PXD41_001928"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL6289433.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(3020..3871)
                     /locus_tag="PXD41_001929"
     CDS             complement(3020..3871)
                     /locus_tag="PXD41_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL6289434.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            3986..4417
                     /locus_tag="PXD41_001930"
     CDS             3986..4417
                     /locus_tag="PXD41_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL6289435.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            4434..5114
                     /locus_tag="PXD41_001931"
     CDS             4434..5114
                     /locus_tag="PXD41_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL6289436.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            5178..6302
                     /locus_tag="PXD41_001932"
     CDS             5178..6302
                     /locus_tag="PXD41_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL6289437.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            6386..>6996
                     /locus_tag="PXD41_001933"
     CDS             6386..>6996
                     /locus_tag="PXD41_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL6289438.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMN"
BASE COUNT         1969 a         1411 c         1600 g         2016 t
ORIGIN      
        1 aatttataat tagaggttct atgggtactc ttaacagctt tttaggcatt attgttttac
       61 tattcattgc atttttattt tcgagcaata aacgtgcaat aaacgtgcgt accgtattag
      121 gcgcattagc attgcaggta gctattggtg cattggtgct ttatgtgccg gcagggcgtg
      181 atgccttgaa tgcgatggca acaggtgtgt caaaagtgat ttcttacggt aatgaaggga
      241 tttcattttt attcggtggc ttagtcagcg acaaaatgtt tgaagtattt ggcggcggcg
      301 gctttgtgtt cgctttccgt gtacttccgg tgattatttt cttctctgca ctcatttctt
      361 tgctttacta cattggagtg atgcaatggg taatccgtat tttaggtggt ttattacaaa
      421 aagcattagg tacatctaaa gcggaatcta tgtctgcggc agctaatatt ttcgttggcc
      481 aaactgaagc tccattggta gtaaaacctt atatcagcaa aatgacagaa tctgaactct
      541 ttgcgattat ggcagggggc ttagcttcta ttgcaggttc tgttatggct ggttacgcag
      601 gaatgggcgt accattaacg tacttaatcg cagcctcctt tatggcggct ccggcagggt
      661 tattattcgc caaaattatg gtgccacaaa ccgaaaaatt ccgtgatgaa ctagaagcgg
      721 tagatttaga aaaaccggca aatattcttg atgcagcagc ttcaggtgct tcttcaggta
      781 tgcaactggc attaaacgta ggggcaatgt taattgcatt cgtggcgtta attgcattag
      841 tgaatggtat tttaggaggt attggcggct ggttcggtta tgatacctta aacttaggtc
      901 aaattttcgg ctgggtattt aaaccgcttg cgtgggtaat cggtgtgcct tgggaagaag
      961 cagaaattgc ggggcagatg atcggcttaa aattagcggt aaatgaattc gtgggttatt
     1021 tagagtttgc taaatactta gctcctgagt caaccgtaca tttaacggat aaaactgttg
     1081 cgattattac ctttgcactt tgtggctttg cgaacttcag ctcgattgcg attttaatcg
     1141 gtggtatcgg ggcaatggct ccaagccgtc gtggtgatat tgcccgactt gggattaaag
     1201 ccgtcattgc tggctcactt gccaacttaa tgagtgcaac cattgccggc ttgtttatcg
     1261 gcttgggtgg agcagttctc taatccagtt tgtataaaac cactagaaat agtggtttta
     1321 tcttttttta tctgacgtaa acggttgctt ttggtttgtc tatttacaag cggtcagatt
     1381 tttataaaat tttaccaacc accacgcatt taataaaagg agacactatg aatttaaaaa
     1441 aatccgctga gattgctctt tcgttgatgg atctcaccac attaaatgac aatgatactg
     1501 atgagaaagt catcgcatta tgccaacaag cgaacaccaa gtttggcaca ccggcagcaa
     1561 tttgcattta tccacgtttt atcccgattg cccgcaaagc attgaaacag caaggtatcg
     1621 agcaagtaaa aattgcgaca gtcacgaatt tccctcacgg taatgatgat attgaaattg
     1681 cggtagctga gaccaaagcc gcagttgctt atggggcaga tgaggtagat gtggtattcc
     1741 cttataaagc attaattgca ggtaatgagc aaataggttt cgacttggta aaacaatgca
     1801 aagcagtttg tgctgccaat aatgtgttgc ttaaagtgat tattgaaacc ggcgagttaa
     1861 aatcagcaga gcttattcgc aaagcaagcg aaatttcgat tcaagcaggg gctgatttta
     1921 ttaaaacctc aaccggcaag gtggcagtga atgctaccct tgaatctgcc cgcattatgc
     1981 ttgaaaccat tcgtgattta ggtgtggcag accgtgttgg ctttaaagct gcaggtgggg
     2041 taaaaacctc ggaagaagcc gcccaatatc ttgcacttgc ggaatctatt ttaggcaatg
     2101 actgggtgag tgcatcacat tttcgcttcg gtgcatcaag tttattagct aatttattag
     2161 caacattgaa tgatgaacag cagcaagctg ttcaaggtta ttaattaata aagaggaaca
     2221 taaaatggct actccacaca ttaacgcacc tgaaggtgct ttcgctgacg ttgtaattat
     2281 gccgggcgat ccgcttcgtg ctaaatatat cgctgaaacc tttttagaag atgcaaaaga
     2341 agtgaccaat gttcgcaata tgttaggcta caccggcact tataaaggtc gccgcatttc
     2401 agtaatgggg cacggtatgg ggattccatc ttgctcgatt tacgctaaag aattaattac
     2461 tgaatatggc gtgaagaaaa ttatccgtgt cggctcgtgc ggtgcggtac gtaatgatgt
     2521 caaagtgcgt gatattgtca tcggtgttgg ggcttgtacc gattctaaag taaaccgtat
     2581 tcgcttccgt gataacgatt ttgcggcgat tgctgatttt gatatgacat tagctgctca
     2641 ccaagcagct aaagcgaaag gcattgaagc tcgtttcggt aatttattct cagccgattt
     2701 attctactca cctgatgtcg aaatgtttga tgtaatggaa aaatacggca ttttaggcgt
     2761 agaaatggaa gcagcaggca tttatgcggt agcggcagag tatggagcaa aagcattagc
     2821 aatttgcacc gtttcagacc atatccgcac cggtgagcaa actacctctg aagaacgtca
     2881 attaaccttt aatggtatga ttgaaattgc gttagagtca gtattaattg gcgataagca
     2941 gtaatttcta acctgacaag cggtgaaatt ttgcaaaaaa tttgcagaat ttgaccgctt
     3001 gttatttttg attcttcctt tatcttcctt tcgggctttc gccaaactgc cttttatatt
     3061 ctcgactaaa ctggcttggg ctttcatagc cgacttgata ggcggtttca ctcacgctta
     3121 ctcctgcttg tagtttttcc cttgccgcat ttagtcttaa cgatttctga tattgcagtg
     3181 gtgtcattga agttacgctt ttaaaatgag cgtaaaaccc cgccacgctc attcctacct
     3241 cttcagccag tgctgacata tttagtgtat cggcaaattt tctttctaag atttttgttg
     3301 cattggcaat tttagcaata ttgccatctt gagagagtag agagcgtata tagccacctt
     3361 gctcagattg taataaatag aaatagagtt cgtttaatat caatggtgca agaaaatgaa
     3421 tatgatttgg agaattaagc aaatttagta agcgtaacaa acagtcttta atttcattct
     3481 ccagctccca tttagtgcgt tgattaatgt tttcacttat tttctgtggg ggaagctgcg
     3541 tgataatttt ggcaataaga tcaaaatcca agcgtagtga aatcgcaaga taaggctgat
     3601 tttctgcaac tgataaggtt tgggtaacaa tcggcaaatt cacagggcaa aacatcattt
     3661 cctgattacc gaagacttgg caatgtccat tggtacagat ttgccgctcg cctaataata
     3721 ctacacataa acttgggtct tggatataac cgttaaatct aatagaacga tcggcagcgt
     3781 gaacggttag ccctgaaatg ggagtagccc aaagttcatt tttcggagcg agggcaaaaa
     3841 tagattcaat aatagctcga tgagtttgca taataatctc acttttagaa aattaggcat
     3901 attttataga aaatcaggca agacgacaaa tagcaaaaag cggataatat ccccaatcaa
     3961 ataaagcatt taataggagc aaaatatgaa aattttttat cacacatcag caactgcaac
     4021 cggtggtcgt gacggcagaa cccaagtgga tgacggttct atcggttttg atttagtcgg
     4081 tttccaaaat gaaagtggca aagtaggcac taatccggaa caattattcg caatgggcta
     4141 tgctgcctgc tttgacagtg caatgaatca cgttgcccca accttaggca ttaagccaac
     4201 caaatccagt accactgttg cagttgggat tggtcaaaaa gctgatggtg ctttcggctt
     4261 agatttagat attaccatta ctgtggaagg cattagtgcg gaagaagcga aaactttaat
     4321 tagcaaggca cacgaagttt gcccatattc aaatgcaacc cgtggtaatg tagatgtgcg
     4381 tttacacgtt aaagtcgtga gtgaatttga cttataaaaa ataaataggg gaaatgaaaa
     4441 tgttagattt tgaaaccacg gtaaaaacac gacaatcaat ccgcaagttt ttaccgcttc
     4501 cgatgacgga aactgaaatc aaacaaattc ttgccgatgc acaaaatgcc ccttcggctt
     4561 gtaatacaca gccgtggtta gtacacgttg cctctggtga aacgctagca cgcttaaaag
     4621 ctcgttttaa aaagactttt gaagcgggca ttaatgatgc ggattttgag ttcaatcaaa
     4681 cgaaatttac cggtgactac gaaccacgtt ggcgtaacca atacagccac gtttttacca
     4741 ccagctatgg cattccccgt gaagataaag ccggtcgcca agtggtgtat gatgacaata
     4801 ttgtcggtta tggtgcgcca catatggcat tcctatttat gccaagcatt gacggacacg
     4861 atgtcaatat tgccagcgat gttggtatgt attcgcaaac tttcttgctc tcactcaccg
     4921 ctcgtggttt tggcggcatt ccgcagcttg cccttgcgat gtttgctaaa gatgtgcgtg
     4981 aagagttagg cattcctgaa cattacaagc tcctccacgc catttctttc ggacacccag
     5041 attgggacgc tatgcagaac aaacaccatt tagggcgtgt gccggtggaa gagagtgcga
     5101 ccttacattg gtaataaaca agcggttgat ttttcgcaaa aatttgcgaa atcaaccgta
     5161 ttttttagga gaatacgatg ataaatttat ttacccctta tactctgaat aacgatgtag
     5221 aaattaaaaa ccgccttgta gttgccccaa tgacccattc cgcctccaac gatgacggca
     5281 caattagcga gcaagaacgc catttcttgc ataatcgtgc agcagatatg ggcttattta
     5341 tcaccgcagc aaccggggta atgcgtaacg gcaaagcgtt ttacggtcag ccggaagctc
     5401 ttgatgaacg ctatttggca agcctgacag aaactgccaa tatcttgaaa aatcaaggca
     5461 ccaaagcgat tttgcaaatt ttccacggtg gggcacaagc tattcctgcc ttgcttgacg
     5521 gggcgaatgc agttgcgccg tccgagcacg ccaacggtgc taaagcccta acggcggacg
     5581 aagtgaagca aatgatccaa gctttcgcta atgccaccga tttagctatt caagccggtt
     5641 ttgatggtgt ggaaattcac ggggcgaacg gctatttaat tcaacaattt ttctctactg
     5701 aatttaatca acgcactgat gaatggggcg gtagccttga aaaacgcttg cgtttcccgt
     5761 tagcggtggt tgaggcagcg gtcagcgtgc gtgaaaaaca ccaacgccct gattttatta
     5821 tcggctaccg tttctcaccg gaagagccgg gcgaacacgg cttaaccatg accgatacct
     5881 acgccctgat tgatgctttg tgcgaaaagc cgttgcaata cttgcacatt tcactctggg
     5941 atttcggcaa aaaagcccgc cgtggtgcag ataccaactt cacccgtatg caactggtac
     6001 accaacacat caacgggcgt ttaccgctga tcggcgtggg taacttatta accggtgaac
     6061 agatccgtaa agcttatgca acaggctggg cagaatttat cgccttaggt aaagcggtaa
     6121 tgctcaaccc gaacgtggcg accttgttga aagataatcg agacagtgag attgtcagcg
     6181 aactcgaccc gcaacaagcc gaccactacg gcattcccga tagactatgg ggctactgcg
     6241 tgcaaggtgg tgcttggtta ccgccgctta aagggcaaaa cgggcaacca atggatattt
     6301 aatcattaca gacaagcggt catttttttg taaaaatttg caattaagtg accgcatttt
     6361 ttcaattatc tgaaggagaa aaattatgat tacgttacat tacctgaaca gttcctgctc
     6421 tcaccgcatc gtttggttgt tggaagcctt aggcttggat tacgagctaa aaatctacca
     6481 tcgtgaagag agcggttttg cacctatgga ggtaaaagcc ttgcacccac ttggcaaagc
     6541 ccctgtgttg caagatggcg atttggtgct tgccgaaggc aatgcgatta tccagcatct
     6601 gattgcccgt tacgccgaag ggaaatttga gccgactcgt ggtagcgaag cctattcaat
     6661 gtatcactac tggttgtcga tttctgcttc attattctcg gcaaaccttg tgacaatgtt
     6721 ggctaatcgc tctgatctcg gagcttttgg cgactacgca aaagcgcaga ctccgctgta
     6781 ttttaaccat attgagcaaa cactttcaga taaaaaatgg attgtgggtg atgaactaac
     6841 cggtgcggat ttttctctct gtttcccact acaatggggg cgtaattttg ttgaaatggc
     6901 aaattacccg aatattgcac gctatttaga acaggtggaa aatcaccctg cttaccaaaa
     6961 agcgaatcaa aaagccctga agcttgatat gaatag
//
LOCUS       DANLXB010000137         6968 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLXB010000137 DANLXB010000000
VERSION     DANLXB010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6968
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            7..1041
                     /gene="metN"
                     /locus_tag="PXD41_001934"
     CDS             7..1041
                     /gene="metN"
                     /locus_tag="PXD41_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL6289439.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            1031..1708
                     /locus_tag="PXD41_001935"
     CDS             1031..1708
                     /locus_tag="PXD41_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289440.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            1731..2564
                     /locus_tag="PXD41_001936"
     CDS             1731..2564
                     /locus_tag="PXD41_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL6289441.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            2647..3477
                     /locus_tag="PXD41_001937"
     CDS             2647..3477
                     /locus_tag="PXD41_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL6289442.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            3529..4320
                     /gene="metQ"
                     /locus_tag="PXD41_001938"
     CDS             3529..4320
                     /gene="metQ"
                     /locus_tag="PXD41_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL6289443.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(4365..5516)
                     /gene="metK"
                     /locus_tag="PXD41_001939"
     CDS             complement(4365..5516)
                     /gene="metK"
                     /locus_tag="PXD41_001939"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL6289444.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(5699..6541)
                     /locus_tag="PXD41_001940"
     CDS             complement(5699..6541)
                     /locus_tag="PXD41_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL6289445.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            6601..6918
                     /locus_tag="PXD41_001941"
     CDS             6601..6918
                     /locus_tag="PXD41_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6289446.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
BASE COUNT         2117 a         1298 c         1487 g         2066 t
ORIGIN      
        1 tagaaaatga ttcagctgaa aaatatcagc aaacaatttg aggtaaaggg caaaaaaatt
       61 accgctctgg ataatgtaaa cctagaagta ccaagaggca ctatttatgg tgtcattggg
      121 gcatcagggg caggaaaaag taccttaatt cgctgtgtaa atttattaga acgcccaaca
      181 atcgggcaag tgattgtcga tgggcaagat ttaacggcaa tgtcggataa agagttgatt
      241 cacgctcgcc gtaatattgc aatgattttc caacatttta atttgctttc atcacaaact
      301 gtatttgaaa acgtggcgtt atcgttgcgt ttaagcaata cgccaaaaga gcaagttgag
      361 aagaaagtca atgagctgtt ggatttagtg gggttaacag atcgtaaaga tgtttaccct
      421 gcaaatcttt ccggtgggca gaaacagcgt gtagcgattg ctcgtgcgtt agccagcgat
      481 ccacacgttt tgttgtgtga tgaagcgacc agtgcgttag atccggcgac tacgcaatcc
      541 attttgcagc tattaaaaga tattaataaa cgtcttggtt tgacgatttt attaatcact
      601 cacgaaatgg aagtggtaaa acgcatttgt gaccgagtag cagtgattga taaagggcag
      661 ttgattgaat ctggctcggt aagtgaaatt ttctcgaatc cgaaaaccga attagctcag
      721 aaatttattc aatcgacttt ccattttgaa ttaccgcaag aatataccga gcagctttca
      781 agttcgccga ctgaacatag taagccgatt attaaatttg agtttaccgg acgttcggtg
      841 gatgcacctt tgctttcaat ggcatcgaag aaattcggca ttgattttag tattttgatg
      901 tcgcaaattg attatgcagg cggggtcaaa tttggatttg taattgcaga agtgagtggt
      961 aatccggatt ccattgcaga ggcaaaattt tatttaattg ataacaatgt aaaagtagag
     1021 gtgttaggct atgtgggctg attttatgca ggagatgacg ccacagatgt ggagcttagt
     1081 atgggaatct acttttgaaa ccgtttatat gggctttgtg gcaacggcat tggcggtagt
     1141 catcggttta ccgattggtt tcttggcgtt tttaaccggt aaaggcgaaa ttttagaaaa
     1201 tccgagatta caccaagtgt tagatgtcgt tattaacatc gggcgttcga ttccgttcat
     1261 tattttattg attattttgt tgccatttac tcgcttagtt gtgggcacaa cattaggcac
     1321 aacggcagcg attgttcctt taagtgtttc ggccattccg ttttttgccc gtttaacttc
     1381 aaatgcgttg cttgaaattc cgtccggttt aacagaagcg gcaaaatcaa tgggagcaac
     1441 aaattggcag gtagtgacaa aattttattt accggagtca ttaccgattt tgattaatgg
     1501 cattacgcta acgctggttg ctttaattgg ctactcagca atggcggggg ctgttggtgg
     1561 cggcggttta ggcaatttag cgattagcta tggcgaacac cgtaatatgg tgtatgtgaa
     1621 atggattgct accattatta ttgttgcgat tgtgatgatt agccaaaaat tgggtgatca
     1681 tttagcaaaa cgttacgatc atcgttaatt ttatttaaaa agaggtttct atgagtttca
     1741 agaaaatttt aggcgttgca ttggtttctg cattagcatt aaccgcttgt aaagaagaga
     1801 aaaaggcaga atctaccgct gctccggcag ctcaagctcc ggctaaaatc aaagtagggg
     1861 taatgtcagg ccctgagcat accgttgcag aacgtgcagc acagattgca aaagaaaaat
     1921 atggtttaga agttgagttc gttttattta acgactacgc tttaccgaat actgcagtaa
     1981 gtaaaggtga tttagatgca aacgcattcc aacacaaacc atatttagat aaagacagcc
     2041 aatcaaaagg tttaaacaac ttagtgattg tgggtaacac ctttgtttat ccgttagcgg
     2101 gctactctaa aaaagtgaaa aatgtgtctg agttagcaga aggtgcggta attgcagtac
     2161 caaatgatcc ttcaaactta gctcgtgctt tgattttatt agaaaaacag gggttaatta
     2221 aattaaaaga taataccaat ttattctcaa cttcagtgga tattatcgaa aatccgaaaa
     2281 acttaaaaat taaagaagtg gatacttcaa ttgccgcaaa agcgttagat gacgtagatt
     2341 tagcggtggt aaataacact tatgccgggc aggtaggctt aaatacccaa gatcacggtg
     2401 tatttgttga gtctaaagat tcaccgtatg tgaatattat tgtggctcgc caagacaata
     2461 aagatgcagc taatgtacaa aactttatta aatcttacca aaccgaagaa gtgtaccaag
     2521 aagcacaaaa acactttaaa gatggtgtag taaaaggttg gtaatttagc tgatttttac
     2581 ttaaatggcg attaagcgct aggttaatcg ccattttcat ctttaaaata taggaaggag
     2641 caaacaatga actttaaaaa attattaggt gtggcgttag tatctgcctt agcacttact
     2701 gcgtgtaaag atgaaaaagc acaagcacct gctacaacag ctaaaactga aaacaaagcc
     2761 ccattaaaag tgggtgtgat gaccggccct gaagcccaaa tgaccgaagt ggcagtgaaa
     2821 attgcaaaag agaaatatgg cttagatgta gagttagtgc agtttactga atacactcaa
     2881 ccaaatgccg cacttcattc taaagattta gatgctaacg cgttccaaac ggtgccttat
     2941 ttagagcaag aagtgaaaga tcgtggttat aaattagcga ttatcggcaa tacgctagta
     3001 tggccaatcg cggcttattc taaaaaaatt aaaaacattt ccgagttaaa agacggagcg
     3061 actgttgcga ttccaaacaa tgcaagtaat actgctcgtg cgttattatt gcttcaagct
     3121 cacggtttat tgaaattaaa agatccgaaa aatgtgtttg ctaccgaaaa cgatattatc
     3181 gaaaacccga aaaatatcaa aatcgtacag gcggatacct cacttttaac ccgtatgtta
     3241 gatgatgtag aacttgcggt aatcaacaac acttacgcag gtcaagctgg gttaagtccg
     3301 gataaagacg gtattattgt ggaatctaaa gattcaccgt atgtgaattt agtggtaagt
     3361 cgtgaagata ataaagatga cccacgctta caaacttttg tgaagtcatt ccaaaccgaa
     3421 gaagtattcc aagaagcgtt aaaattattt aacggtggtg tggtgaaagg ttggtaatca
     3481 gttggacggc atattctgcc gtccttttct taaaaggaga aacagataat gaaaataatg
     3541 aaattagccg gtgcagttgc aattttctcg ctttttttaa ccgcttgtaa tgataaagcc
     3601 gaaaagttga aagtcggtgt gatttccggc cctgaacata aggtaatgga agtggcggca
     3661 aaaattgcaa aggaaaaata taaccgtgat gttgaattag tggtatttac cgattatgcc
     3721 acgcctaatg cagctttaga taaaggcgat cttgatttga atgctttcca gcataaacct
     3781 tatttagata accaaattca ggaaaaaggc tataaattag tgccggtcgg caatactttt
     3841 gtttatccga ttgcggctta ttccaaaaaa attaaatcgc tggcagagtt gaaagatggt
     3901 gatactattg cagtgcctaa tgatccgact aatttagccc gtgctttaat tttattggaa
     3961 aaacaagatt taattaagct gcgagcagat gcaggcttaa aagcaaccag tgtggatatt
     4021 attgaaaacc ctcgtaaatt ggtgatccaa gaaattgaag caccattatt gcctcgaacg
     4081 ttggacgatg ttgccttttc gattattaat actacctacg cagggcaaaa cggtttaacg
     4141 ccaaccaaag acggaatatt cgttgaagac aaggattcgc cttatgtgaa tttaattgtt
     4201 gcccgtgaaa ataaccaaca ttctgaagcc gtaaaagatt tggtgaaagc ctaccaaaca
     4261 gaagaggtgt ataacaaagc gaatgaagag tttaaagggg cgatgataaa aggctggtaa
     4321 ttgaagataa ataaggcata gattcctatg ccttactttt tatgttacag acctgctccg
     4381 gctcttaatg cttcggcttt gtcagttttt tcccaaggaa aatgtttacg accgaagtgt
     4441 ccgtaggcag cggtttcacg gtagattggt ttgattaaat ctaacatttt gattaagcca
     4501 tacgggcgta agtcaaagtt ttggtagatt aatttcacaa gtatttcgtt gctcacttta
     4561 cctgtgccga aggtttcgac cataattgat gttgggtcag ccaccccgat agcataagaa
     4621 agttggatct cacagcgatc ggctaagcct gcggcaacga tattttttgc gacataacga
     4681 gcagcataag cagcagagcg atccactttt gacgggtctt taccagagaa tgcaccacca
     4741 ccgtggcgag ccgcaccacc gtaggtatct acaatgattt tacgcccggt taaaccacag
     4801 tcacccattg gaccgccaat cacaaaacga ccggttgggt tgatgaaata tttggtgttt
     4861 tggctgagcc attcgcttgg tagtaccggt ttgatgatct cttccatcac cccttcaatt
     4921 aactcttttt gcgaaatatg ctctgcgtgt tgtgtagaaa gcactacggc atcaatgccg
     4981 ataattttat tgttctcata agcaaatgtt aattggcttt tagcgtcagg gcgtaaccaa
     5041 tcgagtttgc ccgatttacg cacttttgac tgctgttcca ttaagcggtg tgcgtaagta
     5101 attggagccg gcattaacac ctcggtttca ttggtagcgt agccaaacat aatcccttgg
     5161 tcgcccgcac cttgctctaa cggatcggca cggtcaacgc cctggttgat gtccggagat
     5221 tgtttaccaa tcgcatttaa taccgcacaa gagtgagcat caaagcccat atcagagtga
     5281 gtatagccga tgtcgcaaat cacttggcgg gttaagtttt caatatccac ccacgcagag
     5341 gtagtgattt ctccccctac taatgccata ccggttttca cataagtttc acaagcaacg
     5401 cgtgctttag ggtcttgttt taaaatttca tctaataccg cgtctgaaat ttggtctgcg
     5461 attttatccg gatgcccttc tgaaaccgat tcagaagtaa ataaattaat tgccatttgt
     5521 attcctctct atcttaaata tggattatta atagtaggga cgggtccagt gcccgcccat
     5581 aaattatata aaatgtttgg acaggcacag gaccggtccc tataaaattt gtttggaagt
     5641 gtttccgtct agacgtctat aatatatttt ttgaacgttt taggcaaata gaatttgttt
     5701 atttggctaa atatgccctt aaaccagcca acgcattttt ggcatcttct acccctaaat
     5761 cgtacattgc ttgtatttta tttacatccg tttcaaggcg actgattttg actgttctgc
     5821 ttggacgaat cacaaaaatc tgttgttttt cattgagttg aataatctgc tcaacggctt
     5881 gattatattc cgcatagcgg ttttcccagc gttgcactaa tttcggatat tttttataaa
     5941 aacgtttaaa cagccacatc gagcttggtt tcttacggta ttcaagtggg cgagtaagca
     6001 ccacgataat tttgtcatat cccatttcaa taaatttctg caccggaata ctgtctgaca
     6061 caccaccgtc taaatatttt ttaccctcaa tttcgactat tttggataca atcggcattg
     6121 aggaagtagc tcgaaaggct tccatttgct cgaacacatt gtcaattttg atgtattcgg
     6181 gctcaccggt ttcgacattg gttacagtaa cccaaaagtc cataccggaa tcctcaaagg
     6241 cttgttggtc aaacggatcc agtttggaag ggagttcata gtaagcaaaa tcccgattaa
     6301 cgatattgcc ggtggtaagc aagctgtgta accccatata ccgcttatct ttagcgtatt
     6361 ttttgttgta tcgcaacgcc ctaccttttt gttttgaagg caaattcacg ccaaataacg
     6421 caccggctga aacaccgatt gctccatcta tatgaatatg ttcatctaaa aatacatcta
     6481 acacgccggc agtaaaaata cctcgcaaac caccgccttc cagcactaat ccaactttca
     6541 tatcattctc cctgtaattt gtgtattata acccgaatta tcttgctagg agaaatcaca
     6601 atggctgatg cagaatttat ggatttcctg ttagatcaac taagcccgat ttccggtttg
     6661 cgttcgaaaa aaatgtttgg tgaatattgc ttgttttttg ataataaaat tgtcgctatt
     6721 atcagcaaag attatcgcat ttttgtcaaa gctaatccgc aaaccttgcc gttattctta
     6781 gctgaaaatg ccgaacaatt tcactatttt gctaaaggaa aagtgcaaaa aatgcactac
     6841 tggagcattc cggaattagc gattgaagaa gccgatgaac tggtcaaatg gattcggcta
     6901 ggcttacaag cggtgtaatt tagcgaaaat tttgtaaaaa aacgctaaaa tatgcccgct
     6961 tgttaggg
//
LOCUS       DANLXB010000138         6901 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLXB010000138 DANLXB010000000
VERSION     DANLXB010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6901
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(190..1701)
                     /locus_tag="PXD41_001942"
     CDS             complement(190..1701)
                     /locus_tag="PXD41_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6289447.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            1920..2744
                     /gene="iolB"
                     /locus_tag="PXD41_001943"
     CDS             1920..2744
                     /gene="iolB"
                     /locus_tag="PXD41_001943"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL6289448.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(2820..4271)
                     /locus_tag="PXD41_001944"
     CDS             complement(2820..4271)
                     /locus_tag="PXD41_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6289449.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(4449..5759)
                     /locus_tag="PXD41_001945"
     CDS             complement(4449..5759)
                     /locus_tag="PXD41_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6289450.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(5775..6470)
                     /locus_tag="PXD41_001946"
     CDS             complement(5775..6470)
                     /locus_tag="PXD41_001946"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL6289451.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            6686..>6901
                     /locus_tag="PXD41_001947"
     CDS             6686..>6901
                     /locus_tag="PXD41_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6289452.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTR"
BASE COUNT         2095 a         1576 c         1303 g         1927 t
ORIGIN      
        1 tccaaaccaa atgctttgtt tcaaatttgt tacgtagatc acatttttag gaagagataa
       61 atgcaagcgg tcaaaacagg tcgctttttt gcaaaaattt gaataaaaat gaccgcttgt
      121 gagatgaaaa ccaataaaaa agcggtgatt tctcaccgct aaacactcaa aaaagaaatg
      181 tactcgttat tataaggttg ggaaattaaa tgccgcttgg ctacgcaccg agctgtccgg
      241 ccaacgggtt gtgatggttt tcatacgggt gtagaaacgc acgccgtctg tgccgtacac
      301 attgagaggc ccgaaaatag aggctttcca accgccaaag cagtggaacg ccattggcac
      361 aggaattgga atattcacgc ccaccatacc ggcttgtaca tcttgggtga attgacgtgc
      421 tgaatcgcca tctgcggtga aaattgcact accattgccg tattggtgac tgttaatgag
      481 tgcgatccct tcggcataat ctttcacacg cacaacagag agaaccggtc cgaagatttc
      541 atcttgccag atggtcattt caggtgtcac gttatcaaac agcgtacctc cgacaaagta
      601 accgttttca aacccttcga ctttatagcc tcgaccatcg acacagagtt tcgccccctg
      661 tgccacccct tgatcgatat agctctcaat tttggcttta tgctctttgg aaatcaccgg
      721 ccccatatca ttttcaagca cgccttgtgg tagtaagcct gaaccgattt tcaatgcttt
      781 gaccttagga attagctctt caatgatttt atcggctaat tcatcaccaa caactaccgc
      841 taccgatagt gccatacaac gttcaccggc tgcaccaaat gctgcgccca gtaaggcatt
      901 aattgtgcct tgtacatcag catccggcat aatcaaagcg tggtttttcg caccgcccaa
      961 ggcttgaacc cgtttgccgt ttgctgagcc tttctcataa atatattgtg caattgcagt
     1021 tgagccgaca aaactcaccg cctgaatgcg agagtcggtt aaaagaatat ctaccgcttc
     1081 tttatcacct tgcaccacat tgaatacacc gtccggcaag ccggcttctt ttaataattc
     1141 tgccaagcga atagacacac ttgggtcttt ttcagacggt tttaaaacga aagtgttacc
     1201 gcaagcaagt gccactggga acatccacat cggtaccatt gccgggaaat tgaacggggt
     1261 aatgcctgcc actacgccca acggttgctg gattgagtga atatcaatgc cacgccctgc
     1321 attggcggag aactcacctt tttgtaagtg tggaatacca gtggcaaatt ccaccacttc
     1381 taaaccacgg gttaattcgc caatcgcatc ggaatagatt ttgccgtgtt ctgagctgat
     1441 taaacgagcc aactcatcaa agtttgcttc caataactct ttgaatttaa ataaaattct
     1501 ggcacggcgt agtggtgatt gttgtgacca gcttttgaaa gcctgatcgg ccgctgcaat
     1561 tgccgcatcg acttcgtttg gcaggcttaa tttgactttt ttggtctctt caccggttgc
     1621 gggattaaat accgaggtaa cacgctggct ttggctttca acgactgcac cgttaataaa
     1681 attttggaca aattggctca ttggaggctc cttatcaact gattgagagg aaaaacggat
     1741 aaaatacagc cgataaacta ccgctaaaaa tggaaaatat caatacataa tactaaaaaa
     1801 tgaaaatttt atttcatttt tgtgatctaa gtagcaagtt tacagattgc cggtattaaa
     1861 atgagacaaa atttcgtata gtttgaaagc gtattccatt tcgttaagcg aggtttccta
     1921 tgtctagtcc attattgtct aaacccaatt tcaaccaaca tgaagggtta attcagcaca
     1981 ttacccctga aaatgcacag tgggaatatg ttggatttga tgtttatcag ctcagtaagc
     2041 aacaaattac gctggaaagt ggtgaaaatg aactttgtct agtctttgtg accggttttg
     2101 gctctgtcta tgttgatgat tatgcttttg aaaatatcgg caaccgtacc acgccatttg
     2161 aaaaaattcc gccttatgcg gtctatatcc cgccacacaa aagcgtgttg gttaaaaccg
     2221 aactcaattt agaattggca gtgtgcaaag caccaagtca gggtaattat ccggtgcgtt
     2281 tgattagccc gaaccatatc ggtgtggaaa aacggggctt tggcaacaat caacgcttgg
     2341 tgcataatat tctgccggaa accgaagcag ccgacagttt gctggtggtg gaagtcttta
     2401 ccgatgaagg caataccagt tcctacccaa gccacaagca cgatgacaaa cactctaccg
     2461 aagaaaccta tttggaagag acctactacc accgcttcga tccaccacaa ggttttgcaa
     2521 tgcaacgggt ttataccgat gatcgcacac ttgatgaatg tatggcggtg tatgataaaa
     2581 atgtggttaa agtgcctcgt ggctaccacc ctgttgctac cattgccggc tataacaact
     2641 actacctaaa tgttatggca gggccggtac gcaaatggaa atttacttgg gaacaagatc
     2701 atctttgggt gaacagtgaa acctataaag ccaaatttga gtaatgcaag cggtcttttt
     2761 ccaccaattt tttacaaaat aagggattaa aaatgggacg cttttggcgt cccattcggt
     2821 tatactttca tacaaagata ttttatttct aaaaactctt caataccgta cttcgaacct
     2881 tcccgcccaa gtccagactc tttccagccg ccgaacggag cgatttcgtt actgatgatc
     2941 ccctcattaa tcccgacaat gccatattcc aactgctccg atactcgcca aattcgcccg
     3001 atattttggc tgaataagta agccgccaaa ccaaactcag tatcattcgc ccactggata
     3061 acctcttctt cggtttcaaa tttgaaaatc ggggcaaggg gagcaaaggt ttcctcacga
     3121 gccactttca tcgcttgagt gacatttttc agaatggttg gctggaagaa tgtgccaccc
     3181 agtgcgtggc gttcaccgcc taacaccagt tctgccccaa gtgaaagggc atcgttaatg
     3241 tggctttcga ctttttccac cgctcgttca ctaattagtg cacctatcgt gacctcttcc
     3301 tcaaatggcg agccaagctt gatttgagcc actttctcac tcaattttgc aagaaattgc
     3361 tcataaatgc ccgcttgcac ataaattcgg ttagcacaga cgcaggtttg cccaccgtta
     3421 cggaatttag aggcaaacac gccctcaacc gctgtatcta gatccgcatc atcaaacaca
     3481 atcgccggtg cattaccgcc tagctccaat gccaattttt ttaccgtccc tgccgattgt
     3541 tgcattaaaa ttttgccgac acgggtggag ccggtaaagg tgagtttgcg tacggtcgga
     3601 ttagtgctca actcccgccc tacaccttcg acatcgctac tggtaataat gttaaatacc
     3661 cctttgggaa tacctgcttg atccgctaat tgggctaatg ctaaggcaga aagcggggtt
     3721 tctgccgccg gtttaatcac aatcgcacaa cctgccgcta acgccggtgc cgctttacgg
     3781 gtaatcattg catttgggaa attccacggt gtaattgctg ccaccacgcc aatgggttgt
     3841 ttagtcacaa acaagcggcg accggcttta tcttgtggca agacatcgcc ataaatccgc
     3901 ttgctttctt cggcaaacca ctcgataaaa ctggctccat aggcaatctc gcctcgactt
     3961 tctgccaatg gtttaccctg ttctagactt aaaatctggg cgagttcttc ttggttttgc
     4021 ataatcagct caaaccattt acgcaaaatc acggaacgct ctttgggcaa taatgcctgc
     4081 cattttttct gggcaactgc ggctgcttca atcgcttgag cggtttcttc cgtgcctaaa
     4141 tcagccacct caccgatttt ctcaccatta gtcggattct gtaccgtaaa ggttttccca
     4201 ttttggcttg aaacaaattt accgttaata taggcttgga aacggagtag caaaaatttg
     4261 tgatttggca taatcactcc ttgaatggtt aaaaagagaa caatattgac tataatccaa
     4321 tttcagtaaa gagaaaagag ctgaaaaata actttttact caataataaa gcaccttaga
     4381 caagcgttct tctaaggtgc agccatttat tattgagaat taacttaaat tctctacata
     4441 tttaataatt aagatacaat cattggagcc catacgaatc caaaagcaag cccaacagca
     4501 accccaacta aagctggaag cataaacgga tgatctataa tatatttgcc agcacgagtt
     4561 gaacccgtag tatctaattc catcgctgct aatgaagttg ggtaggttgg caggataaaa
     4621 atgcctgtaa ttgcaatgaa agaagccaaa attgcccagt tagggatccc caagcttact
     4681 gctaatggaa taataagagc agaagttgac ccttgtgaat aaagtaatgc acaagtaaaa
     4741 aagagtacta cagctaacaa cattggatat tcagttaaaa tatttccaat agaggcttta
     4801 atttctatta aatgtgcatc gacaaaagtc atacctaatg taacaatccc gataattacc
     4861 gcaatagaag tcattcctga gcggaaaatt ggactagcca caatcgtatc aggtttaatt
     4921 tttcctacca acatcattaa gcacgaagag gctaacatca tcacaataat tatatctcgg
     4981 gtactcattg acttcccatt ttcatatact ggctttaacc ctggaacggc tgcaagtaga
     5041 acaaccaata cagttgctag taagaaaatg ccaatcgata gttttgctcc ttttgaatag
     5101 gtagattcac tcgctaactt acgagatggg ctgacgattc ctgcttttaa acgttctaaa
     5161 taaacaacat cattttgcaa ttcacagccc tgcttagaag caacaaatgc agcaaccata
     5221 gaggcaataa aagaaacagg taagcatact gctattactt gaaaaaatgt aacactgttg
     5281 ttttccatta ctgctatcat agccgccatt gcagcactca atggagaacc tgcaatagct
     5341 aattgagaag acacaaccga gccggctaat gctcttgaag ggcgaatacc actctctttt
     5401 gccacttctg caatcacagg taaggtggaa aagacgataa aacctgtacc agccataatc
     5461 gtcattaacc aagtaatcat cggtgcaata aagttaatat atttaggatt tttacgcatc
     5521 aatacttccg cataacgaac aagtaaatcc atacctccta ctgcttgtaa cacagcagca
     5581 cctattacaa cagtcataat aatcagcatt acatcaactg gaatagaacc cataggtaaa
     5641 ccaaaaccta gagttagaat cgcaagccct aaaccaccat atagtcctat tcctaagccc
     5701 ccagaacgca gtcctaaata gattgcagca agtaccacaa agatttctgc ataaatcata
     5761 tccatctcct taaattaatg agtttgatac caatcaattg cttttttaac caataccaac
     5821 gttgaatcta cataacgcat tggctcacgc tctatttctt gagctaaaat aataggtact
     5881 tctgtacaac ctaaaataat tacttctgca cctaaacgaa tgagttcatc acgttgttgt
     5941 aacattagct ctgtggcttt ctctaactca cctgatttta ataaatagat actatccatt
     6001 actgcctttt gaccattttc tgtcgggcaa ataaaagtca gtccttgtgc ttcaagctgt
     6061 tttttgtata ggtctaccgc caaagttgca tcagttgcca acaatccaac ccgccatttt
     6121 ccacacttca aaacctcatc aaccacacaa tcaatcatac ttagcatctc tacctgactt
     6181 ttggccttca agtgttcaaa ccaataatgt gcagtattac atgcaataat gatgcaggtt
     6241 gcccctgcac tctcaagccc ttcaatatat ttttccatta ccggagccgg attctctcca
     6301 tttgctaaaa tatagcgagt tctatctggt atgtcgggaa tagaggaaat caataatgga
     6361 atatgagctt gatcacaatc agctggtgtt aagcggataa atttttggaa catatctgct
     6421 gttgctgcag gtcccattcc acctaaaatg ccaataatat ttcttgccat acacttctcc
     6481 ttataagatt taatttactg cgatgactta tacaaacaag ttatgcaaaa aagaaatgca
     6541 ataaatcgaa tcagtatgca aaaaatgcaa caaagctctt tatagataga aaaaaaatct
     6601 ttaaaatcaa taaaatacta atatatcaaa tataaattta atgcatttaa tgaaatcata
     6661 atgcgaaatt tgcattggtt aggatatgaa aaacatagaa acaaaatggt tagaagattt
     6721 cttaacgcta gaagaatgtc gccatttttc tcaggcagca gaaaaaagaa atttgtcaca
     6781 atctgcattt agcagacgta ttttagcttt agaagaagtt gtgggagtga agttatttga
     6841 tcgtacctct attccattac aactcacaga acaaggtaag ctatttcatt cacaaacgcg
     6901 a
//
LOCUS       DANLXB010000139         6847 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLXB010000139 DANLXB010000000
VERSION     DANLXB010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6847
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            23..700
                     /locus_tag="PXD41_001948"
     CDS             23..700
                     /locus_tag="PXD41_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6289453.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
     gene            748..3600
                     /locus_tag="PXD41_001949"
     CDS             748..3600
                     /locus_tag="PXD41_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6289454.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKT
                     ASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYH
                     LLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTG
                     DIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAV
                     LGVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQV
                     TLGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQ
                     ANTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDL
                     LALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAG
                     ISANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
     gene            complement(3675..4511)
                     /locus_tag="PXD41_001950"
     CDS             complement(3675..4511)
                     /locus_tag="PXD41_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL6289455.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            4619..5494
                     /locus_tag="PXD41_001951"
     CDS             4619..5494
                     /locus_tag="PXD41_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6289456.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            5630..6070
                     /gene="nudB"
                     /locus_tag="PXD41_001952"
     CDS             5630..6070
                     /gene="nudB"
                     /locus_tag="PXD41_001952"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL6289457.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            6083..6823
                     /locus_tag="PXD41_001953"
     CDS             6083..6823
                     /locus_tag="PXD41_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6289458.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
BASE COUNT         2119 a         1358 c         1478 g         1892 t
ORIGIN      
        1 acttgaattc aaaaggggtt ttatgaattc tataattaga aaggaatggt ttacggcatc
       61 tgaagtagct ggaatgggaa atttacctga acaaccatca aatgtaacaa gaagagctac
      121 caaaaataat tggctcaaaa gacaaataga gggaaaaagg ggggttgctt ttgaatacca
      181 ctacagctct ctcccaataa gcgtgcagca agagttaggc tttgctcaaa cggcagtaaa
      241 agaagagcct agaacattag tggcagccca aactgcagat gaaatggaac gtgtgccgtt
      301 ttataatgta caggcttcag caggctttgg tgctttcaat agcgaggtgt atgcccctga
      361 tgactatatt gggctaagta aacgatggct agatgtgcgt ggcttctatt tgagctatct
      421 tgcatttatt accgcttcag gtgattcaat gtacccaacc atcagtgatg gcgatatgct
      481 attggtaaac cgagccacca cccagcctaa agacggtaaa atttatgtgt tccgccaagg
      541 cgagcagctt tgggttaaac gtgtgcaagg cattatgggc ggtattcgct taatcagcga
      601 taataaagag ctatacagcc ctattgatgt gatttttgat gaaacgttag attttgaggt
      661 tatcgggcag gttgtgtaca ttggacacga gatgatttaa acgccattta aagctactta
      721 aatcattttt actttttcgt tgttttaatg gtacaagcgg ttagttttag ccattttttc
      781 gcaattcatt atttttactt ttttctacat aaaacaaagg ggcaatgcac cgcaaagccc
      841 ctgttttcaa tacttctgtt tcacttattc ccgaaaaatt ccgccaaatt cctattattc
      901 ttttatttct tagttttaat ggttctatac agtaatgaag tagcaaacgg caaattgctt
      961 atcactgggg gaacgaacct caacggtacg ctttctgcag aaggtacaag cgaaatcatt
     1021 ttatcgggcc gtccaacacc tcatgcctat gataaagtag cgaataaaga agtcctgatt
     1081 gaaggcgact ggatcaaccg atcgttcaac gcaacaatct ttgcagctaa agacaatggc
     1141 aagcttgaaa tcagccgtaa tgttgccaat attaacggta attttaattt aacagataat
     1201 gctaccgctc aaattggttt tacccaaggt acctcacaag catgtattcg ctctgaccgc
     1261 acaggcgtag caacctgtaa tattaacgct actttatcag agactgattt aaacagctgg
     1321 gagagaacca aagtggctgg caatgtctct ttagctgaca attcaacatt ttcgttaggc
     1381 agtaaagcag acttaactgg ctcaattaca gctcaggagt ccactaaggt tcaacttaat
     1441 gatggaagta ttgctaattt aaccggcttg agtacaacag gaatatttaa tggcgccaat
     1501 ggttcaaccg ttaatctttc tggggtatgg acaaccttaa ccaacactgt tgtagatgtc
     1561 ttgaatgtcg caaatggtag ccaaatccat ttaaacactc caactgcaac aaaacagaat
     1621 acgcttaccg ctaataccct cacagggaac ggcatcttta aatttgtcgc tgatctgacg
     1681 aaaacagcga gcgatatagt cacaattaaa gacaccgcaa gcggtcaatt ttcgatagaa
     1741 attagcacaa atggtagcgc ccattcagcc caaaagatta aattatttga aacaacaaat
     1801 gaagaagact tttctcttaa tttagcaaat gaagtgcgct caggcgaata tcgctaccat
     1861 ttactcaaag aagggaatgt gtattacctc aatccagaga aagaggaaga acctaaaatt
     1921 actcaaaaag ggccaagtga aaccgctgac ccattacctg aatacaccgg ggatattgag
     1981 cattctgaaa aagggccggg tgaaactgct gatccgttac ctgaatacac aggcgacatt
     2041 gagcattcag aaaaaggatc gggtgaaacc gctgagccat tacctaaata caatggaaat
     2101 gcacatttga tcgcatccga gttaactgcg caaactaatg ctgtattagg tgtaactaca
     2161 gtattagatc atgtaattca ttcggaaggg acccaaaaac agaatacgct taccgctaat
     2221 accctcacag ggaacggcat atttaaattt gtcgctgatc tgacgaaaac agcgagcgat
     2281 atagtcacaa ttaaagacac cgcaagcggt caattttcga tagaaattag cacaaatggt
     2341 agcgcccatt cagcccaaaa gattaaatta tttgaaacaa caaatgaaga agacttttct
     2401 cttaatttag caaatgaagt gcactcaggc gaatatcgct accatttact caaagaaggg
     2461 aatgtgtatt acctcaatcc agagaaagag gaagaaccta aaattactca aaaagggcca
     2521 agtgaaaccg ctgacccatt acctgaatac accggggata ttgagtattc tgaaaaaggg
     2581 ccgggtgaaa ctgctgatcc gttacctgaa tacacaggag acattgagca ttcggaaaaa
     2641 gggccgggtg aaactgctga tccgttacct gaatacacag gagacattga gcattcagaa
     2701 aaaggatcgg gtgaaaccgc tgagccatta cctaaataca atggaaatgc acatttgatc
     2761 gcatccgagt taactgcgca aactaatgct gtattaggtg taactacagc attagatcat
     2821 gtaattcatt cggaagggac ccaaaattgg aaagtatggt ctaaaacaga ttatcaaacg
     2881 acagagcatc gctctgccgg atatggattt aaccaagatg cgaacgttat ccatctagga
     2941 ttagagaaag ccttagataa tcaggtcaca cttggtatga tattatctca atcaaaagcg
     3001 agaaataatt ttgaccatta ttatagcggt aaaggtcgct taacaatgct atcaatgtat
     3061 gcgaagaaaa catggcaaaa tggtgttttt gttgcgatag ataccggttt tgggaaagca
     3121 agcaatcgct taacttatca agcaaataca gtaaaattag atcgttcagt atttgtaaca
     3181 gggcttagta tcggtaaagc atgggaatct gcaaacgtga atataatccc atcatttagc
     3241 gcccgttatc atcatttatc ttcagcaggt aatcaacttg tagatgcaaa aatcgaaaca
     3301 aacgctgttg atcttctcgc tcttcaagct ggtctgtcaa ttaataaaac gcttgaacta
     3361 aatggcctgc aaataaaacc ggaaataggt agctattttg ttgatgcaag ccatgggaaa
     3421 ttaagaacac gtttcaataa tttacaaata gagcagcaaa tggggcgtta ttttaaacaa
     3481 gaagcaggta tatccgctaa ttatcgcaat ataaacgcag gaattcaggc aggtttctta
     3541 acggggaata cgctaaataa acagcgttat atctcgttca aagttacata tgaatggtaa
     3601 atattgagat taagggctat ccattactaa atggcatggc cctttattta ctcctcaaca
     3661 atgtaaatta cccatcaaaa caaactctgc tgcccaagca aattctccgg cacaggtttg
     3721 atttgaaatc ctttttccgc caaaaagcct tttagggttt gaatattata aaaggcgtgg
     3781 cttttagtgg tgttttcaaa gtagagatag agcctgtcaa attccgttct gcggctaaaa
     3841 agcaattctg ccaagccttt taattcctcg tctgaatagc ggtaatcgtg gcgttctgcc
     3901 gcactctgcc ctttccacca attcgggtta cgaccatgta agcgtaaata agcagtacgt
     3961 tggttggcaa aaaagtgaaa tgccggtaag ccgatatttt gtgggtaatc cacattacac
     4021 caaatcagat tagagctttt cgcaaaggta tcaaacaccg ccggaatatg ccagcttggg
     4081 tggcgaaatt caatcgctaa cggataatcc gcaaaccatt ggcacaactc ggcaaggtaa
     4141 cggcggttaa gtggcatacg ttcaaattga gttgggaact gaacaaataa atttgccaat
     4201 aacccttcag cggtgaacgg agctaacgca ttaagaaata attgtgcttg atctaaagtc
     4261 gccgtgcgtt gatggctgaa atcttgatgc agtttcaccg aaaaattcag ccgaccttcc
     4321 gctttctgca ccattccttc aaaggctttc tgcccgatgg gggcgtggaa tgtgctgtta
     4381 atttccagcg tgtcgtaatg ttggctatag acaaagagaa aatcctcttt tgcagtgccg
     4441 aatgggtaaa gcgtgccgat taaatctgtg tcggcatagc cgccggtgcc aatataaata
     4501 tgagggagca ttgtgtttat tctttcaatt ttttgcaaat tttaatggtt ttttaaccgc
     4561 ttgcaaactg agaataaaag agtaagattt ggctatcttt tcttatttca tcatcattat
     4621 gtggatttgg tttactctgc tggcagccgt ggctcaagcc ggtcgcaatg cctttcaaaa
     4681 gcaattaagc gtcaatgtgc ctgtattggg ggtaacgctc gcccgctttt tctatgctgt
     4741 gccgttggca agcggttatc tctatttttt ataccaatat gacgataacc tcaacattcc
     4801 ccattttcca ccgctgtttt ttgtatatgc tatcggggct gggttggctc aaattctggc
     4861 aacttcgcta atggtgcaac tttttcactt aaaaaattat gcaataggtg tcgggctggc
     4921 gaaaagcgag gcagtatggg cggctttact gggcgtgtta ttttttggtg taaccatcag
     4981 tggcattggc tggcttggcg tggtactagg tggagtggcg attttcttaa tgaccggcag
     5041 cggtaatcta cgccaacttt cgtggaaaac actctttctc ggcatagcca gcggtttatg
     5101 tttcgccctc acatcacttt gggtgcgaga ggcaagcctg caactcaaca gccactattt
     5161 gctttcagcg gcgtgggtac tttttagcgt gattagcttt gaggcagtga tattggttat
     5221 atacctagct cttctccaaa aagagacact gattaaattc tttcgttttc caaaattagg
     5281 tatgttgacc agcctgtttt catttctcgg ctcattcggt tggttcaatg caatgagcct
     5341 gaaccacgtt gcctttgtaa aaacgcttgg acaagtggaa attttcttta ttctcggtat
     5401 ttcctatttt gtgtttaaag aacggcttaa aattcaagat tttatagggc tgattttagt
     5461 agtgattgcc gcaatcttgg tggtgctggg ctagatcgga tttttacgtt ttttatctag
     5521 ctttgtaggg tgggcgtaag cccacgcaaa accaataaat catttatccg tgggcttacg
     5581 cccaccctac gatacctaaa aaaattaaat ttcacatctt agtaataaaa tgaactataa
     5641 aaatcctcat agtatccttg tggtgattta tgctaaaaat acccaacgag tattgatgct
     5701 acaacgcaag gacgatcctg atttttggca atcggtgacc ggttcgatca atattggaga
     5761 aacaccgctg gaagcagcag aacgggaagt gagcgaagaa accggtttgc aaacttttga
     5821 gcaaaaacaa ccgcttgttg attgccaaaa gcagatagaa tttgaaattt tcccgcattt
     5881 tcggtataaa tacgcaccta atatcacaca ttgtgtcgaa cattggtttt tgctgccact
     5941 tgatagtgag caagagccta ttttaaccga acatttggca tatcgttggg tttcagtgga
     6001 agatgcggtt cgactgacta aatctcccaa caatgcccaa gcaatacaag aatatttaac
     6061 atcaaaataa ggaaacaaca gaatggcagg ccatagtaag tgggcaaata ttaaacaccg
     6121 taaagcggca caagatgcac aacgcggtaa aatttttact aaattaattc gtgaattggt
     6181 gactgccgcc aaactcggcg gtggtgatac ctcttccaac cctcgtttgc gtgcggcggt
     6241 ggataaagcg ttatccagca atatgacccg tgataccatc aaccgtgcaa tcgagcgtgg
     6301 tgtaggcggt ggcgatgata ccaatatgga aaccaaaatc tacgaaggtt acggcccggg
     6361 tggtacagca gtgatggtgg aatgtttaag tgataacgct aaccgtacga tttcccaagt
     6421 tcgtccaagt ttcacaaaat gtggcggtaa cctaggtact gagggttcgg taggttattt
     6481 atttagcaaa aaaggcttaa ttttagtggc aaatgccgat gaagatgcct taactgaagc
     6541 tgctattgag gccggtgcgg acgatattca accacaagaa gatggtagct ttgaaattta
     6601 taccgcttgg gaagatttag gctcagtgaa agacggcatt gaggctgcag gctttaaaat
     6661 tgagaatgca gaagtaacaa tgattccatc aactaccgtt gaacttgacg cagaaactgc
     6721 accaaaactt cttgatttaa tcaaccgcct tgaagattgt gatgatgtac aaaacgttta
     6781 tcacaatggt gaaatcagtg acgaagtcgc tgcattactg taataaaaaa atcacgcaaa
     6841 ataagca
//
LOCUS       DANLXB010000140         6836 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLXB010000140 DANLXB010000000
VERSION     DANLXB010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6836
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..2596
                     /gene="topA"
                     /locus_tag="PXD41_001954"
     CDS             <1..2596
                     /gene="topA"
                     /locus_tag="PXD41_001954"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL6289459.1"
                     /translation="LVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDEKTEK
                     AKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSELKSL
                     AKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDDPQPL
                     NIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQ
                     SEEFWTILANTQINRKKLPLELTTYKGKKFSANNEAEANVAVRALEQSDFIVSNIEAK
                     ETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSREAL
                     AMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKDAERL
                     YDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKNPEDQ
                     ELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIISTIQE
                     RGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNWKEEL
                     NTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLGCTGY
                     ALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAERKLH
                     VCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCDNTRK
                     ILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAPKVVE
                     LAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIVDYLD
                     GKWVERKK"
     gene            complement(2646..3584)
                     /gene="yvcK"
                     /locus_tag="PXD41_001955"
     CDS             complement(2646..3584)
                     /gene="yvcK"
                     /locus_tag="PXD41_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL6289460.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(3598..4674)
                     /locus_tag="PXD41_001956"
     CDS             complement(3598..4674)
                     /locus_tag="PXD41_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6289461.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(4705..5460)
                     /locus_tag="PXD41_001957"
     CDS             complement(4705..5460)
                     /locus_tag="PXD41_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6289462.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            5612..5821
                     /locus_tag="PXD41_001958"
     CDS             5612..5821
                     /locus_tag="PXD41_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL6289463.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(5870..6592)
                     /gene="bioD"
                     /locus_tag="PXD41_001959"
     CDS             complement(5870..6592)
                     /gene="bioD"
                     /locus_tag="PXD41_001959"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL6289464.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
BASE COUNT         2157 a         1264 c         1445 g         1970 t
ORIGIN      
        1 actagttatt gtggagtctc cggctaaggc aaaaaaaatt aaccaatatc ttggtagtaa
       61 ttatgtggtg aaatcgagtg tggggcatat tcgtgattta ccgaaaagtg gtagtgatga
      121 aaaaacggaa aaagcgaaac cgatttcaac caaagggctg accgctgccg aaaaagctaa
      181 aatcaaagca gaaaaagagc gtgttgcatt ggttaaacgt atgggtatcg acccctataa
      241 tggctggaaa gctaactatc agattttgcc ggataaagag aaagtggttt ccgagctaaa
      301 atcgttggca aagaaagcag atcatatcta tctggcaacc gacttggata gagaagggga
      361 ggcgattgcg tggcatttgc gtgaaatcat tggtggtgat gacagccgtt ttagccgagt
      421 ggtatttaat gaaatcacca aagatgcgat caaaaaggct tttgacgatc cgcaaccgct
      481 caatattgac cgtgtaaatt cccagcaaac ccgccgcttt ttagaccgtg tagtgggctt
      541 tatggtgtcg ccattattat ggaaaaaagt agctcgtggt ttatcggcag ggcgtgtgca
      601 atcggttgcc gtaaaattac tggttgagcg tgagcgtgaa atcaaggcgt tccaaagcga
      661 ggagttttgg actattcttg ccaatacgca aattaatcgt aaaaaattac cgcttgaatt
      721 aactacttat aaaggtaaaa aattctcggc aaacaatgag gctgaagcaa atgttgcagt
      781 gcgtgctttg gagcagagcg attttattgt ttctaatatt gaagccaaag aaaccagctc
      841 tcgagctgct gcaccattta ttacctcatc gttacaacgt gccgctagca ctcgtttagg
      901 ttttggggtt aaaaagacga tgatgttagc ccaacggtta tatgaagcgg gttacatcac
      961 ctatatgcgt actgattcaa ccaaccttag ccgtgaagca ttagcaatgg ctcgaggtta
     1021 tattcaggat aatttcgggg cgaattattt gccggaaaaa gcaaatgtgt atcgcagtaa
     1081 agataatgcc caagaagctc acgaagccat tcgcccgtcg gatgtgaatg tcaaaatggc
     1141 ggatttaaaa ggaatggata aagatgccga gcgtttatac gatttaattt ggcgtcgttt
     1201 cttggcgtgt caaatgttgc ctgctcgtta tgattctacc gcagtcacag tgtctgccgg
     1261 agactatgaa ctcaaagcaa acgggcgtgt actgcgtttt gacggctgga cgaaagtact
     1321 gccggtgcaa ggcaaaaatc cggaagatca ggaattaccg gcggttgaac tgcatcaaaa
     1381 attaacgctt gatgaaattg tgccaagtca gcattttact aaaccgcctg cacgttttaa
     1441 tgaggcgtct ttggttgctg agttagaaga gcgaaaaatt ggccgccctt caacctatgc
     1501 ttcaattatt tcgacgattc aagaacgtgg ctatgttcgc accgaaaaca agcgttttta
     1561 tgtggaaaaa atcggtgaag tagtgacgga tcgcctcaac gaatcattca aagatttaat
     1621 gaattatgat ttcactgcca atatggaaga ggtgctcgac caaattgcag aggggtctaa
     1681 aaattggaaa gaagagttga atactttctt taaacatttc tctgaagagt tgagccaagc
     1741 agaattagat gaacttgaag gcggaatgaa accaaacagc cttgtgccaa ccgatattga
     1801 ttgcccgact tgtggacgaa aaatggcaat tcgcaccgct tccacagggg tatttttagg
     1861 ttgcaccggc tatgctttac cgccaaaaga gcgttgcaaa acgacaatga atttaattcc
     1921 agaggcggaa tttttcaatg tgttagattc ggattctgaa accaaagccc taatggctcg
     1981 caagcgttgc ccgaaatgcg attcggcaat ggatagttat gtgattgatg ctgaacgtaa
     2041 attacacgtt tgtggtaata atccaaattg tgatggtcat attattgagc aaggttcctt
     2101 caaaattaaa ggctatgacg gacctgtagt ggaatgcgat aaatgcggtt cagatatgca
     2161 cttaaaactg ggtcgtttcg gcaaatatat gggctgcaca agctgcgata acacccgtaa
     2221 aattctgaaa aacggggaag ttgctccgcc aaaagaagat cctattgctt ttcctgaatt
     2281 aaaatgtgaa aaagccgatg cctattttgt attaagagac ggagcaagtg gggtgtttat
     2341 gtcagctcat aacttcccga aagtgcgtga aagccgtgca ccaaaagtgg tagagttagc
     2401 tcaatatcgt gaacgtttgc cggagaaatt gcagtatctt gccgatgctc cgcagcaaga
     2461 tccggaagga aacgaggcaa ttatccgttt tagtcgtaaa gagaaacgcc aatatgtgac
     2521 ttctgagaaa aacggcaaag ccaccaaatg gattgttgat tatctagacg gtaaatgggt
     2581 tgagcgtaag aaataaagct taaaagacaa gcggtaaaat tttctaaaaa ttttaccgct
     2641 tgcttttaga tgttctgagc gagtagttca tcaattgctt tacttaattt attgcgatcg
     2701 tgtcggtaat aaacgtcatt cgcagataag ttttttcgca agatttgaat atgttcggga
     2761 agttcagaac cggcatcatc agtcgtaatt accgcattaa ttctagcctg tccgatacag
     2821 ttctccatcc attcaattcg ctgattaagt gatagttgcc cagctgggcc atgttcttgt
     2881 ccgatattgt caataaatac tactcgggct ttgctttgag caatagagtt tgctatgcct
     2941 gccaccagca aattcggcat aatactggta aaaaagctac ctgggcctag cagtattaac
     3001 tcagcacttt gaatagctga aatggcttct ggtgtagcaa caaccatagt atctaacgct
     3061 aaatgttgtg gtgtttctgc taaagaatca atttgcactt caccaaatac tgattcgcct
     3121 gaatgcaact gtgcaattaa atgcaccggt atttcagaca ttgggataag ttgcgatctt
     3181 acgtgcaata attctcgcac caaattaatc ccttctagcg gtcggatttg catattttca
     3241 agggcggtga gaattaaatt gcctagatta tgtccagcga gttcgcctgt gccagcaaaa
     3301 cgatactcaa acaaccgaga agctatcgtt ggtttaacga taatttgatt taaacagttg
     3361 cgtaaatctc cccaagcaat caccccttgt tgtgaacgta ttctaccggt tgagcctcca
     3421 ttatcggtag tggcaacaat gccggtaagc cgttccttta aaaaagagag cgcggagagc
     3481 aatcgaccta agccgtggcc cccacctagt gcaacaactg cattgagttg gtttaaatag
     3541 tgatgtcggg taggtttaaa aggaataata tctgtatttt ccatcttggg atttcgttta
     3601 tttttctaaa ataatggcat ctgactgggc tgaaggcaat gcttgtaata cagctttaac
     3661 caaagtcgct aaaggaatcg caaaaaacac tccccaaaag ccccataaac caccaaagat
     3721 gagtacggca ataataattg tcagagggtg tagatttact gcttcagaaa ataaaaaggg
     3781 tacgagtaaa tttccgtcta gcaactgact aataataaat gcgagcatta aatagtagaa
     3841 atccggcgat aacccgaact ggaatagagc aattaacatt accggaatgc tgactaaaac
     3901 cgcaccgatg tagggaacta acactgaaat ccctaccgct acagaaagta gtaacggata
     3961 gcgtaaatca aaaaagagga aaataatata agtgacaacc ccaacaatta gaatttctaa
     4021 aaatttacct cgaatatagt tggcaatttg ttgttgcatt tcaaaccata ctcgtgttgc
     4081 aagtcgacgg ttttgcggta atactttact aaaagaacgc attaaaacga ttttatcttt
     4141 cagtaagaaa aagaccatga gtgggactaa gaaggtgtaa atgcctaagc caactaagct
     4201 gatgatagag ttaatcgaga gtgttagaag tgattctccc atactcaaaa tattactttt
     4261 agcggtattc acaatggaat ctagggtcgc ataatctact aattcagggt aatgctccgg
     4321 tagggcttgt aaccaagcat tgagcagatt aaacatcgaa ggtaaatctt gaataaaggt
     4381 aactgcttga ttccaaaggc tgggtagtag tactacgcct aaaaaagata ataaagcgat
     4441 gaaacctcct agtactagaa tgacactcaa agttcgaggt aatttgagtt tgctcgacaa
     4501 aaaacggatt ggccattcca ataaataggc aaacacaagt gcaaccagaa ggggcataag
     4561 cagatcgcta aaaaaataga taataccgaa accgatcaat agaatactaa acagcacaac
     4621 tatttgcggg tcggtaaatt tttttcgata ccaatcttgc aacatttgaa acatatggat
     4681 tgcctttaaa ttatgcgatg aaaattattt ctggctacag actgcaatga accctagctt
     4741 tttgtccggg tcattaaata gtttgtacat tttattaaag gtttcgcgat tttctggttt
     4801 taatgcattg ccgataattt tcatggcgcc taaaacacct tcatcatgaa tcagaccttt
     4861 aggggaaagt agagacattt ctccggaaaa ggtatcaaca ttacggaaac cacaacgttg
     4921 gaataatgat ttccagtctg ctttagcaag tggagagaca gtgatattga ttgcatcacg
     4981 caactcggct aataaagtat cggagtcttt atcttggata acaatatcgt gcgttaataa
     5041 aaagccattt ggttttaata cacgaaaata ttcacgtatt gccttttctt tcgcttctag
     5101 aggaagcatt gtcagcatgg cttcattaat tacaatatca aaactttcgt cgtcaaatgg
     5161 cagttttgtt gcgttggcgc gctgtacttg aattaaatgc tcaacatggt tttctttgat
     5221 atttttacgt gctttttcaa gcgcatcttc gtctaaatca ataccaacaa tttggcattc
     5281 aaattgttga gctaattgga ttgcagtagt ccccatgtta caggcaactt cgagcacttt
     5341 tttattttta tcaaaatccc cgtttgcaat taaccaatca gttgctaatt tccccccggg
     5401 gcgtaaacga gttttgccta aacgagctaa aaaatgatga ccaacttctt cttttttcat
     5461 aaaaacctct ggatttgcaa aatacgttaa atatatgacc gcttgtattg tgatctatgt
     5521 tcgttattat actcaatttt ttcattttct tatatacaac atcaacagat tttgccagaa
     5581 tacaacctca ttttgatatg aggaaaatag aatgagtaag caaaagaatg attacctcca
     5641 ccagcgaggt caaattaaag aaagtgcagt aaaagcatta gtgactgatc cactttttag
     5701 acaacgtgta gaaagaaatc gtaaagggaa agggagctat cgcagacaag aaaaacacaa
     5761 aaaaactatc tatgggcaaa aagaaacccc atttaaaaat attcggttag agtcttttta
     5821 aatggggttt tatttgtagc ttattgtagt tttataagcc tgataaacac tatggtttac
     5881 tgaaataggc caacaacggt tctggatttt gaatataaga agaaagttct ttatgctctg
     5941 ggtgacccat atagggaatt tgcccaagta aaggcgcatt aattttttgt gtcagtagtt
     6001 caattaattc gtgataatgc cgtagccctg gatttactct gtttgcgacc caacttacta
     6061 attttacacc acgctgcaaa atttcattcg cagtaagtag tgcatggtta acacaacctt
     6121 ccttaattcc caccactaaa acaaccggca tattgttttg cattacccaa tcagcaaaat
     6181 agtaatcctt gttaatagga gttagccagc cataggttcc ttctacgaca acatttggat
     6241 aggcattttc tagtcgtttt aaatctgtgt ttaatttttc cagttgaata tgatgaactg
     6301 catctaaagc tgcaaataca ggggtactgg aatgaataaa agtatagcta ttaatatcac
     6361 gatagctaac attagttgga cagctatcta gtatggttaa tacgtctgaa ttatcttcag
     6421 tagcataatc atattgagta ggttctgtgg gtaatgaatc atcaccgcca caagcaatgg
     6481 gtttatagcc aattacagga aaactatgtt ttgtaagtgt ctgtatgatg gctcgggtaa
     6541 ccacagtttt ccctacgttg gtgtctgttc cggtaataaa taatgagggc ataaatggct
     6601 cctttcgaaa atatggctgg tagtttaacc aaaaatagat caatttattc tgtctttgat
     6661 caaatttccg tcataaattc cttgttttat tgctgaacag gcaattaatg gactattcca
     6721 atcgtattgg ctggtaacta aatcgatttt taggtttgtt tgtaacaaat ttttatgcaa
     6781 tttttctgaa atttgcgtaa ataacggctc ttttattttg atcaatggcg agttta
//
LOCUS       DANLXB010000141         6632 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLXB010000141 DANLXB010000000
VERSION     DANLXB010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6632
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXD41_001960"
     CDS             complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXD41_001960"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL6289465.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1976..3073)
                     /locus_tag="PXD41_001961"
     CDS             complement(1976..3073)
                     /locus_tag="PXD41_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6289466.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
     gene            3403..4119
                     /locus_tag="PXD41_001962"
     CDS             3403..4119
                     /locus_tag="PXD41_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6289467.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(4162..5080)
                     /locus_tag="PXD41_001963"
                     /pseudo
     CDS             complement(4162..5080)
                     /locus_tag="PXD41_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(5082..>6632)
                     /locus_tag="PXD41_001964"
     CDS             complement(5082..>6632)
                     /locus_tag="PXD41_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL6289468.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1910 a         1346 c         1246 g         2130 t
ORIGIN      
        1 ttagcaactg ttttgtccac ttggcatagt ttttgacgga tcagcaacta ttttgtctac
       61 tatgcctttt tgttacttcc agtatttttt cttcgaggtt tgcccgatcc ccggattaaa
      121 gctgttggtt ggatcaagct gccggtagaa tttgcgtaag gtcggttttg cttcgtaaag
      181 atgaccgaca ttatgctccg cagggtattg tgccccacgt ttatccagta attctaacat
      241 ctgatgttcc aacgccaaac aatctacacc ttttttcaca atatagtctt gatggaaaac
      301 atggcacata aaatgcccat aataaagttt gtgcgtgatt tgactctcta tttccggcgg
      361 tagcacttca aaccacgctt tatcatttcg gcgaagggca atatctaaag caacaatatc
      421 ttccacctct ttatcgtgaa tggctcgata gcgaatcgct gccgaagcaa cggcaaaacg
      481 atgtaacatt gccgcttggc tttcagtcgg attacactcc aaataaccgc ctttttgtgt
      541 atcagcaaaa taacgggcaa gatagtctct tgcttcttga acgccttttc cacccatttt
      601 gataattaag tgatgttcat actggttacg gtagtctcga agactttccg gcaaatgttg
      661 cggtaacatt tttgagattg cctgtaatat tttatcactg agatttgccg gtaaaaaggt
      721 gagtttcttc gccattctgt ccacttttgc tttaagtgaa aagagttgtg gtaagcggtg
      781 tgtaccgagt tttttaatca cccaaaaagt atctttaccg taatcagcgg caatatcaaa
      841 ggcatcacga tgaatatatt caccggaaat cggcaatacc tcaaagttgg ctaacatata
      901 gcgacgaata tcgtttaatg tgtccgtatg atttgtcccg atataaaaaa cagccgtgtc
      961 tttttcaagc ggaaaggtat ctaatcgcac cgcaaacacc gctaactttc ctgcactacc
     1021 ggcagcctcg tagtggcggg caggatcggc attaaaacgg gcaggggagt cttcatcaat
     1081 ttggcggacg tgattacaat aggcgtgatc gtgtcctttt ccgcacgctt gctgaatatc
     1141 cttacgctga taacgttggg cttgcagatt ttctaaaatt tcttccggcg tatcacctaa
     1201 atcaatacct aaatggtttt ttaattccag cgtgccgtct tcatttaact gggcaaacag
     1261 tgccatttca gtataagccg gcccacgttg cactaatgca ccccctgaat tattacaaat
     1321 accaccgata accgaagccc cgatacagga cgatccgatc accgaatgcg gttcacgtcc
     1381 gtgcgttttc agcaacaatt ccagctcatt taatgtcgag cccggtaagc aaacgacttg
     1441 attggcattg ttaattaact gaatgccgtt cattcgcatt gtgttaatga tcacaatatc
     1501 ccgatcataa tcgttgccgc ttggtgttga accaccggtt aatccggtat tggccgcttg
     1561 tgagataaca atgacatcgg cggcgacaca ggcttttaat acgttccagt attctaataa
     1621 cgttgtaggt tttaccactg caatcgcact acccgtgcca aagcgatacc cgctacgata
     1681 ggcttccgtc ttagtcgggt cagtgatgat ataagactgc ccgacaattt cagtaagctg
     1741 agaaatcagt gaattatttg acattatgct tccctcaaag gtagaaatag atagggcagt
     1801 atagcaataa acaaaagaga gcaaagcaga atgttacaaa attgtgaact actgcacaga
     1861 ataaatgaag aaatgaagta aaagaaagcg agctaaaaga gcgtcgcccg ctttatttgt
     1921 agaaaatcaa acctaatctg acagtccccc gtttaaaatt accgtgtctg tcagattaat
     1981 ttgagcttaa attcttttct gcccaaatgc gttttccatc aactaatgtc tccatcggtg
     2041 ttcttccaca gcacattttt ccttgatggg ttcgatgatg gttataatac attaaccatt
     2101 catctaagtc agcttgcaat gcctctaaat ccatataaat ccgttttctg aatgccactt
     2161 ggtagaactc ctgcaaaatc gttttgtgaa aacgctcaca gatgccgttt gtttgtggct
     2221 gtttcacttt ggtttttgtg tgctctatgt cattgatagc caaataaagc tcataatcgt
     2281 gattctcaac tttcccacaa tactcactgc ctcggtctgt cagcactcgt aacataggta
     2341 acctctggct ttcaaagaat ggtaatactt tgtcatttag catatcagca gcagtgatag
     2401 ccgtcttcat tgtatacagt tttgcaaatg ccactttact ataagtatca ataaacgttt
     2461 gctgataaat acgacccaca cctttaatat tgccgacata aaaggtatct tgtgacccta
     2521 aatagccggg gtgtgccgtt tcaatttcac cacaggcaat ctcatcttct ttcttccgct
     2581 ccaaggcttg tatctgtggc tcactcagaa taatgccttg ctctgccacc aatttttcga
     2641 gggcagttaa gcgttgctta aaattagcta agtgatgtct caaccaaatg gaacgtacac
     2701 cacctgcaga gacaaaaacc acctgcagag acaaaaacca cctgcagaga caaaaaccac
     2761 ctgcagagac aaaaatcccc tgtttacgca gttcattact cactcgaact tgaccaaaag
     2821 caggattatc taaagcgaat tgtacaaccg ctttttctgt ggattcatcc acacgatttt
     2881 taatgttggg aacacgtcga ttttgattta gtaatgcctc aacaccgcct tgttcgacag
     2941 cctgttgata gcgataaaaa gtatctcgac tcatccccat taccttacag gcttgtgaga
     3001 tattacccag ttcttctgct aaatttaata aaccggtctt gtgtttaata agtggattgc
     3061 tagaataaaa catgagagtt tcctttttgt ttagattgat ttttgacact catattctaa
     3121 acgggaaact ctcacttttt agagtgaatt gtcagatcaa gtctgatctt ctacagacga
     3181 tccaggtctt acacattctt tcaagtttgt aaagcctgaa aattattttt tatacttgat
     3241 ttttgtcaaa aagtctctac actatatggc agggtcagtt ttcgctgttt aacggtgttt
     3301 aatgagattt tcattactgg ctctccttaa tagaaattta tggaagagct atctgataga
     3361 gtaatctagc gatagctctt tttcattgaa caaagaggct atatgtatct tatgtatgtt
     3421 gatgagtctg gttctacgac agatcctact caaaaatatt ttgtattatc aggtatcgct
     3481 gtatttgaac gaaatactca ttggattgag aaaaaaatga atgtgatagc ctctcaattc
     3541 tgtcaatatt ctgaagggag tgatccatat ttctatgagt tacatggttc accaatgaga
     3601 tctggaaaga gtgaatggag aggcattcca atgagtgagc gtattaatgc cattcaagat
     3661 tgcttgaaat tagttcaaag taataatatt cgtatatttg cagcagttat agagcaaggg
     3721 tattctagtg gtcaggatac tattacagaa tgttttgagc aaatatcatc tcgatttgat
     3781 atgtatctga gccgtttaca tgcccaaggt aatacccaaa gaggcatttc tatctttgat
     3841 aaatcatcga ctgagaagtc aatccaagca cttgcaagaa cattcaaaaa tagtgggcat
     3901 acttatggga aacttagaaa tttctcagaa gttccattat ttcttgactc aaagtcatcg
     3961 agattaattc agctagcgga tctagtttcc tatgcgatat ttagacacta tgaacacaat
     4021 gatagctcat tttacgatat tataagaaat aactttgatt atcataacgg gcgtattcat
     4081 ggtttatatt tacggaacaa agaagatatt atttcataaa aattcgcccc aaaagggaga
     4141 agtatctccc ttttgtattt tttataacaa attaaccgtt tctctcaaca tttccacatc
     4201 gtgttcaata tatcctagtg tcacactgat atctttatgc cctaacagtt tctgaaccac
     4261 ataaacattt tcgggcttct tcattaattg agtagcaact gtatgtcgaa atctgtgtgg
     4321 tgatgaagta aaaccgacca agtcagaaat atgccgaaat atatgtgtaa gctgattttg
     4381 gctcatcggc tgtcctcttc ttcgagagca tcgagaaaat aaattgagat tgaacaattg
     4441 gcaattatct gtttgttttc ttatttttaa ttcagtaata agcctttcta tatgaatata
     4501 aagtgaatct gaaatcggta cgatatggta atcatgattt ttattgattt ccggcgaaat
     4561 ataaatcgtc ctattagaaa gatctacatc actaattttc agtttcacta attgtcctcg
     4621 ccgaatcccc gtacatctca atgtcataat aattgcaagg acaaaccagc ttggttttag
     4681 aaagtcaggt aatacaacgt tattattgag tatgtggtct attttatgta attgttcggt
     4741 tgaataagtt ttctttctcc ttttcgattc tcgaataaat aactgattaa atggatttcg
     4801 atttatatta agtaatcctt gcgatatacc aaagttatat aaggctttta aatgtctgac
     4861 ataattattc cacgttactg ctttgatttt atcgccaaca atttgattac gccattcaat
     4921 gagcatatcg gtggtaatgt cattggcatt taactttgga taacgctttt tgataattcg
     4981 gattacgttg ttgtagctcc gtttggtatc cggacgaaga tagtgacgat agaaaaaaaa
     5041 atcggtctag tagcgaatca aaagagatag aagttatcat tttaagtttc ctctttctgt
     5101 aaagttaaac agtgattatt taatagtacc ttatccccaa aaaagagacg ggtatttttt
     5161 atcaaatatc ctgttaaaga ggaagtcttt ctcggtccaa tgacatcaca tttccaaaaa
     5221 ttgatggtat ccggcttacc gttggtcatt gtgtttttag gtgaatgaat ccctaatcct
     5281 tgaaaatcat actggagatt attaattgtt tccttatcat aaggctgtcc agtctcttgc
     5341 aaatacattt caaaaataac gggggtaact aaaaacaggt ggtcttcaac aatatggagc
     5401 ttggcagtag gcttgttaat tgcaaatttg ttggtcgcaa tacctgattt gagccacttt
     5461 acaaagttat ctcctgtaat tgagttctcc ttattctgta actgtagctc tgatagtgtt
     5521 aatgtttcgg gcgtttctac tgcactttgt gttactttga gctttttagt ggtagattta
     5581 tcctgtactt cttgtttgga tggcatactt gcaatttcct gtcccttacc aattgaaata
     5641 tcatcaaggc ttggttcgga actttccgta ggtgcaaaca tatccagcac aaaggaggtt
     5701 aaatcatttt catcatttat gatgatttct gaggatggtg cattatccga gtttgtctct
     5761 acctgagata tttcaacttc tttagaggca ataatgcccc ctgtctgaac actcggtaat
     5821 ggagctggtt tagtggtccc atcgactaat gtagactgag tctctatatt actttcttct
     5881 gttatctgct cgactatttt aacttttccg gcaaaataat ttggtcgatc attaatattc
     5941 tcccaagcca cttctggttt aattctcaat aatgtaaagg tatttgctgg cgtccaacct
     6001 gaatcagctt gaatacggca actccaaatt gctccaccag ccggtgattc ttctacaata
     6061 ccgagagact gcatttcatc aaataacttt ggattatcct taggcactga aattccctgc
     6121 cccagtaagt aagctcggat attatcagca gcagttttgc taacaagcca caatccttcc
     6181 tcagtgaacc aaccgtctgc cggacctttg ggtgtattta actttatttt ctgttccagc
     6241 aaataacgta gtgccaagac cagttgcttt gacagagaat tgacaggacg ttgaaccagt
     6301 ttatttacat cgccaccgag tgcgagggta acactatgct gatcggcttt ctgcacgatc
     6361 tcagataaaa gcccggcttt atcgttatgc ccagacattg catacatcag tgaagaaatg
     6421 acttctggat actgtcccag ccaatcaaac gcagattttg gaataagttg atttgcaagg
     6481 aagcctccta gcaccggatg aagatggtag tctcgacctt tgatgtattt gaatttataa
     6541 ggttgaggtg gtaacccatt ccaagcaaac caacgtgaac cgtctttgag tgtaatttca
     6601 atatcaacga caactttgcc aatatcgtga ac
//
LOCUS       DANLXB010000142         6573 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLXB010000142 DANLXB010000000
VERSION     DANLXB010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6573
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(44..304)
                     /locus_tag="PXD41_001965"
     CDS             complement(44..304)
                     /locus_tag="PXD41_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289469.1"
                     /translation="MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKK
                     ANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY"
     gene            complement(417..779)
                     /locus_tag="PXD41_001966"
     CDS             complement(417..779)
                     /locus_tag="PXD41_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289470.1"
                     /translation="MIDTFFDLDDTSCYLGNWEDILKEYDDCLSVEDFWHSAKEFDTV
                     PHFGNLYQERVILKLIARFCIELNIEQDSGLVEFDYYINAIDTHFYINSQRICDIDDW
                     NEMLDKIREEMTPAKLVA"
     gene            complement(870..1220)
                     /locus_tag="PXD41_001967"
     CDS             complement(870..1220)
                     /locus_tag="PXD41_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289471.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
     gene            complement(1318..1725)
                     /locus_tag="PXD41_001968"
     CDS             complement(1318..1725)
                     /locus_tag="PXD41_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6289472.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            complement(1749..2396)
                     /locus_tag="PXD41_001969"
     CDS             complement(1749..2396)
                     /locus_tag="PXD41_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL6289473.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            complement(2471..3459)
                     /locus_tag="PXD41_001970"
                     /pseudo
     CDS             complement(2471..3459)
                     /locus_tag="PXD41_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            3625..4728
                     /gene="proB"
                     /locus_tag="PXD41_001971"
     CDS             3625..4728
                     /gene="proB"
                     /locus_tag="PXD41_001971"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6289474.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            4752..5075
                     /locus_tag="PXD41_001972"
     CDS             4752..5075
                     /locus_tag="PXD41_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289475.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(5135..5689)
                     /locus_tag="PXD41_001973"
     CDS             complement(5135..5689)
                     /locus_tag="PXD41_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6289476.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(5714..6535)
                     /gene="psd"
                     /locus_tag="PXD41_001974"
     CDS             complement(5714..6535)
                     /gene="psd"
                     /locus_tag="PXD41_001974"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251575.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6289477.1"
                     /translation="MMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDMSEAAKP
                     NFSDYASFNEFFIRPLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKGHYFS
                     LNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMPCDATLCKMIYVPGDLFSVNPFL
                     AEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWA
                     YEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK"
BASE COUNT         1947 a         1367 c         1349 g         1910 t
ORIGIN      
        1 gcgtttgata acataaaaat gtagggtata aatggaagct ccattaatat tcataaggaa
       61 ataaaattgt agtgtaacta cgatcagcct ctgtgattac ataaagtgtt tcatcttcca
      121 catcatagcg agctaaaatg cgtcctccgc gttcaatagc tttcacattg gctttcttgt
      181 cgttatcaca caaatttccc caatcaccac tgcagtagcg atgaagtaga tcaactaatg
      241 tatgttgatt gaaacattca gcaactgcac gagttgcaca tactctacca agctcaaaag
      301 tcatacattt ctcctaaaca gaaagagggg aaatgtcatc ccattgggga gatatttccc
      361 caagtgggtg aattaagacg acagtaagcg tcatttttag taaaaatttg caaaaattag
      421 gcaactaatt tagccggcgt catttcttca cgaatcttat ctaacatttc attccaatca
      481 tctatatcac agattctttg gctattaata tagaaatgcg tatctattgc attgatataa
      541 taatcaaatt cgactaaacc tgaatcttgc tcaatattca gctcaataca gaatcgagca
      601 atcaacttaa ggatgacacg ctcctggtat aggttgccaa aatgaggtac ggtatcaaat
      661 tctttagcgg aatgccaaaa atcttcaact gaaagacaat catcatattc tttcagtata
      721 tcctcccagt tacctaaata gcatgaggtg tcgtcaaggt caaaaaaggt gtctatcatt
      781 atgtttctcc aaattcaaaa taaaagtggg aaacaatctg ccctatcgga aaaattgttt
      841 cccgacaggg tggatagttc tgataccaat caaaacactt catagtgagc taatgataaa
      901 taagggcaaa cattttcatt tgcctccatc tcatcattta gcttgcacat aaagcgatat
      961 aaggtatcaa aaacagcatc catattatga acagtaacgt ataatccgtt ttgtctgagt
     1021 ttataaccac ataattttgc tatcaattca tcaaggctaa tcaattgatt atccttaatg
     1081 acacatacag caatttgccg agaggtatta tttctcgaca cattcgatac actacagtga
     1141 aaaaaccaag gtgtattacg gttattccag acaaattcaa ctaactcacg ttcttgttgt
     1201 gaaaggttaa tagtggtcat catgtttctc caaattcaaa ataaaaatgg gaaacaatct
     1261 gcccaccttg ggaaaattgc ttcccaatag ggtggtaaat aataagatga gtaaatatca
     1321 gcgataaata tcaccggaga cggtttccac cgaaccggta atagcacgac agcgaacatc
     1381 accactcacg gttttcacat aagaggcaac atttccctta atagagacat caccgctaac
     1441 tgtgtcaaca ctgccggcat ctcctgtaat agagacatct gcggcaccgg cactcagttt
     1501 ctgcacattg cccaaaacct caattttgag gactggctca gaacctaatt caatcgactg
     1561 tccattcacc aataattgat tactattgga cgagactaaa atacttcctt tgtttatgcc
     1621 tacgaccgtt tgaatattgc agccaaaaaa tccaatgctt tgaatatctt cgccttgtga
     1681 atcaaacacc tgtttgccat taatataaat accttgtcga ttcatatcgt catctccttt
     1741 gtaaataatt atgcccaaag taattcagct aattttactt ttttctcaag ttcattaact
     1801 gcttttttag cataagtcag tgaataacca tgctctcgtt tctcggggtt gtccttcaat
     1861 tctttgtgct ttgttttggc tttatccaat tcaaacttaa agtattccag actttccggc
     1921 atagacaggt caatttttcc tgccattttt tcccaatatg cgatacgaga ttcataactt
     1981 gcagctttgt tcatttctgc aaccgcattg tccatacggc gagcattacg ttcaataagg
     2041 ttacggtgtc tcttttcgct gtgatgacca atttttattg gctcacctaa actcaaaaaa
     2101 tcacacccct cattagcggc atttacccaa tcttgactac gtttggctgc attatctgca
     2161 tagccttgat agcgttctgc tttttgttga gcaaatgact gactatccat cccatcacaa
     2221 cgagtaaatg aataaaaata atgctcgcca tcttgtttaa caagattatg tacttgaacc
     2281 tcggtttcat taccatattt gctggttagc gtaataattt cacctttggt atgtgattca
     2341 gagcattttg caacaaaaac ggtaggtgca aattttgcat aagtgttaat agtcatagcg
     2401 tttctcctat aaagtagggg aaacgccatc gaggagtttc cccggtgggt aaattgttga
     2461 gataagtaaa ttattggcct tttgatgcca taaatgcaat atagcctaaa ccattttgca
     2521 tagggtcttc gttatatttc agtgcataca gaattttcaa aatccgctca ctttcttgaa
     2581 tccccattct ggcaacttca tccgtttctt cactttgata ccaagctgca taacgttgat
     2641 ctagccgtag aaattcatct tgaatgaatt tatttagcat acagatttcc tctaagaata
     2701 aactcagcgc aaatacaatg cctaagcatg ccccaaatgt gaggattgtc gcgagtgccc
     2761 aacgggcaat ccccatattg atatgccctt ttaaaatatc ggcgagtgca ttaatcagtg
     2821 gaaagccggg aacgagcaat aatacgctgg atgccaaggc aatttggggc tgattgccga
     2881 tgttatattt caacgcgata cccgcaatta gtgaggcgac aaaggcggtc accgcaaata
     2941 caattaaggg gttatagtgt cttgcggcaa gtgattggcg aacatacatg gcgagtgttg
     3001 cggcgagaaa tgtaaccaat gaaactagtg cgtccccacc agataaatga gcaaaactgg
     3061 cacaggatac gccaatcatc aacatcacaa aatagcgatt gtatttaagc ggtttaatgc
     3121 gagccagttt ggcatgcact tgttgcatat catagatttt acgttctgct gtaatcacaa
     3181 tacgttgcac ttcggtaacc acttgcatat taattccttt gtcttggttt ttacggactg
     3241 tcgtgatgca atggtcttgg gctaatgtag taagaataat ggcatttggc gtgagggcac
     3301 attctacgct atctacaccg agggctaagc ctaagcgatg tgccatttgc acaacgatgg
     3361 cactttctgc accatgttgt ataagagttg ggcaacttga acacaaaggc gagtgatttc
     3421 tcgttgccgc tccgtttctt gtgaagaggt tgaggtcata atcgggttcc tagctgaaaa
     3481 atcaagaagc tttattatat gccttttagt gagaaaaaat ttgtgctaaa tcatagaaaa
     3541 tagcaagtaa acgagatgat ttttctgatg attaatggta agttagcttc aattttgtgc
     3601 gacaaaaata agaagataga gaagatgaaa atcgacaaaa cactcgttgt aaaatttgga
     3661 accagtacgc ttacgcaagg atcggcgaag ttaaatttac ctcatatgat agatattgtg
     3721 cgtcagctcg cacagcttca tcaagcgggc tttcgtttag tgattgttac ctcaggggcg
     3781 attgcggcag gtcgtcatta tttaaatcac ccgcaattgc caccgacgat tgcctcgaaa
     3841 caattattgg ctgcggtagg acaaagtcag ctcattcaaa cgtgggaaaa attgtttgcc
     3901 atttatgata ttcatattgg gcagatttta ttgacccgtg ccgacattga agatcgtgaa
     3961 cgttttttaa atgccagaga tactttgcgc gccttattag acaatcagat tattccagtg
     4021 attaatgaaa atgacgctgt cgctacgtca gaaattaaag taggcgataa cgataattta
     4081 tccgcgttag tggcaatttt ggtgcaagca gaacagttgt atttgcttac tgatcagcaa
     4141 ggtttatttg atcgtgatcc gcgcaaacat ccagacgcca aattgatcgc cgacgtggac
     4201 aaaattaccg atcatattcg cgcgattgcg ggcggaagtg gcacctcgtt aggcacaggt
     4261 ggcatgtcca ccaaaatcag tgccgcggat gtggcaaccc gctccggcat tgaaaccatt
     4321 attgcaccgg gtaatcgccc gaatgtgatt gtggacttag cttatgggca agccattggc
     4381 accaaattta gtgtgcaagc agatcgctta gaaagtcgta aacaatggct atatgcggcg
     4441 ccgtcagccg gtattattac cattgatgcg ggggcggaaa acgcgatgtt aatacaacat
     4501 aaatcgttat tgcctgctgg gattgtaaac gtggaagggc gcttttcacg cggtgaagtg
     4561 gtaaaaattc gtactcagca aggcaaggat gttgccttag ggatgccacg ttataacagc
     4621 gatgcgctcc atttaattca aggcaaacat tcgcaagata tcgaacaggt tctcggttat
     4681 gaatatgggg cggttgcggt acaccgagac gatatgattg tgttataaat cagaaaaaga
     4741 aaggtaacaa gatgaattgg aaagcagtat tgatattcag tgtactaggt tcgctggtga
     4801 gctgtgcttc atactctgaa catgcggtgc aacgtattga ggcaggcaaa tcttttgcag
     4861 tgacggggaa tacaaaacgg attaatacca tggcatgtca agataatgat gattggtatt
     4921 tggacggcta tcgtgtggga aaatcatttc gagaacacca acaaaaaatg ttgattcaac
     4981 gaacggctta ctgtgaagaa caaacgggca aggctgtgcc ggacaagttc cgccattcgt
     5041 ggaacagcgg ctatcagcaa ggcttgaaac gataaacgct agacataaaa aagtgcggaa
     5101 aatgaccgca cttttttatg tctagcgttt agctttaaag aatggctaat aattcgactt
     5161 caaacactaa ggtactgaat ggcggaatgg aggcaccagc accacgttcg ccataagcga
     5221 ggttgtgagg aatggttaaa cgccattttg aacccactgg catcatggac aaggcttcaa
     5281 tccaaccagc gatcacgcca tttactggga attctgcagg ttgaccacgt tttactgagc
     5341 tgtcaaagac ggtaccgtcg attaatgtcc cagtgtaatg cacacgcact ttgtcttcgc
     5401 gtgccggaat ttgcccttca ccagccacta acacttcata ctgtaaacca gattccgtag
     5461 tatttacccc cgctttttgc gcgttttcag ctaagaattg tgcaccaacg gcttcaattt
     5521 ctttgaattt cgcttgttgt tgcaaagtct gtagggcatg actcacttca tttaactcaa
     5581 gtgctggtgg attttgattt aacacatcaa agatcccttt cgcgacggct tcggcgctca
     5641 cttcaagttg gctttctaat gacacttggt cgaaaaattg ttgactcatt gtttttccta
     5701 ttgtggttaa aaattatttt tggtgggcaa gaatttcacc catacgtacc gggctatcca
     5761 cttgtaaatg agatgccagt tgcacacgat ctttttcaaa taaattgatc accgtcgagc
     5821 ccaattgaaa ggctcccatt tcttgtcctt tcagtaattt gaccgcactt tctccttcat
     5881 aggcccaggt ggtgattttt tctggacgag gcgggttgat cacacctgcc cacacggtgc
     5941 tcatactcgc ggtaatggtt gcgccgacta aaatttggac cattttacca aattcggtat
     6001 cgaatacgca gatcacgcgt tcattacgtg caaataagtt tggcacgtgt tcggctaaaa
     6061 atggattgac tgagaataag tcacctggca cataaatcat tttgcataag gtggcatcac
     6121 aaggcatatg cacacggtgg taatcgcgtg gtgagaggta ggtggtggca aattcgccat
     6181 ctttaaaatg atgagcgagc gcctcgtcgc cagctaacaa atcgttcaag ctgaaataat
     6241 gtcctttggc ttgtagcaat aaatcctgct caatgtgtcc taactgacta atacgaccat
     6301 ctgccggtaa acaaagtgcg gtaggatttt gattaattgg acgggcattg tccgctaatg
     6361 gacggataaa aaattcatta aagctcgcat agtcgctgaa atttggtttt gcagcttcac
     6421 tcatatccac atggtatttt ttcgcgaata atttaatcac aaaatgtgtg acagcacccc
     6481 attgctgttt tgcaaaccag cctgcaagac gtgttaaata aagttgtggc atcacatatt
     6541 gaaaggcaat tttaatccgt tgccagtaac tca
//
LOCUS       DANLXB010000143         6527 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLXB010000143 DANLXB010000000
VERSION     DANLXB010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6527
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            25..999
                     /gene="znuA"
                     /locus_tag="PXD41_001975"
     CDS             25..999
                     /gene="znuA"
                     /locus_tag="PXD41_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL6289478.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(1051..1371)
                     /locus_tag="PXD41_001976"
     CDS             complement(1051..1371)
                     /locus_tag="PXD41_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL6289479.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            1512..3875
                     /gene="rnr"
                     /locus_tag="PXD41_001977"
     CDS             1512..3875
                     /gene="rnr"
                     /locus_tag="PXD41_001977"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL6289480.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            3879..4145
                     /locus_tag="PXD41_001978"
     CDS             3879..4145
                     /locus_tag="PXD41_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289481.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            4368..4826
                     /gene="mraZ"
                     /locus_tag="PXD41_001979"
     CDS             4368..4826
                     /gene="mraZ"
                     /locus_tag="PXD41_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL6289482.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            4842..5780
                     /gene="rsmH"
                     /locus_tag="PXD41_001980"
     CDS             4842..5780
                     /gene="rsmH"
                     /locus_tag="PXD41_001980"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL6289483.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            5799..6110
                     /gene="ftsL"
                     /locus_tag="PXD41_001981"
     CDS             5799..6110
                     /gene="ftsL"
                     /locus_tag="PXD41_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL6289484.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            6114..>6527
                     /locus_tag="PXD41_001982"
     CDS             6114..>6527
                     /locus_tag="PXD41_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL6289485.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEA"
BASE COUNT         2059 a         1265 c         1463 g         1740 t
ORIGIN      
        1 attaaatgcc ataaggggaa ttttatgttt aaaagaacat taatcggtct agccgtgtta
       61 ggtgcaagtg ttgctcaagc ggatgtatta accagtatta agcctttagg ctttattgcc
      121 agtgccatta ccgaaggggt aactgaaact aaagtattat taccggtaac tgcctctcca
      181 cacgattaca gcttaaaacc ttcagatgtg actcaattac aatctgctca attagtggtt
      241 tgggtgggtg acggcttgga aggcttttta gaaaaaagta ttgaaaaact gccgagagaa
      301 aaagtattaa cccttgaaga tgttgatgcg attgatgata ttgtcgataa agcaagcaaa
      361 aaagaagata aagacgatga tcacgatcat aaacatgaac ataagcacga acacaagcac
      421 gagcataaac acgaagggca taatcacgaa ggacataacc acgatcatca cggacatagc
      481 cacgatgaag attggcatat ttggctctca agcgaggcaa gtgagctggc agcagagcaa
      541 attgcggcac gtttaagcga acaaatgcct gaacacaaag cgaaaattgc ggaaaatctt
      601 gcaaaattta aagcaaatct aaccgctaaa aaagccgaaa ttgcgaaaca attagagccg
      661 gtaaaagcca aaggttacta cacattccac gatgcttacg gctattttga aagagaatat
      721 ggtttaaatt cattgggttc atttaccatt aacccaactg ttgccccggg tgcaaaaaca
      781 cttacagcaa tcaagaaaaa cattgcgaaa aacaaagcac aatgtttatt tgccgagccg
      841 caatttacgc cgaaagtaat tgaaacctta gcaaaagaaa ctaaagtaaa tgttggccaa
      901 ttagacccac tcggtgcaaa agttcagtta agtgcgactg cttaccctga atttttacaa
      961 gttttggctg acgaatttag ccaatgttta acaaaataag ttaaaaatcc cccatttaaa
     1021 tataaatggg ggattttgcg attacatcac ttaagctttt tttaagaatt ctgatttcaa
     1081 cataatttta ccgcaatcga cattatggtc accttgagct aaacggattc ctttgaattt
     1141 tgtacctttt ttcagtactt cagacgagcc ttttaatttt aaatctttga ttaataatac
     1201 atcgtccccg tcagataata aattgccatt actgtctttt acaattagca catcatcatc
     1261 ttgatccgtt tcttcgcccg tccattcata cgcacaatcc gggcaaacaa attgaattga
     1321 gtcgtggtaa gtattttcgc ttttacattc agggcaggtt gggtaaatca ttttaattcc
     1381 tcaaattaat aaagaaccag attatatacc gaaatccagc aaaacgctaa gcggtcatat
     1441 tttgccgatt ttttaccaat cgagctaaaa gtcagttaga atagccttaa ttacacaaaa
     1501 aggaggatac tatgatagtc gatccgaatt atcagcaaga attagaaaaa tacgaaaatc
     1561 cggtaccaag ccgagagttt attttaaata caattcgtga acataacgcc ccaatgagcc
     1621 gtgatgaatt attgtcggct tttcatattg acgatgaaga acgaatggaa ggcattcgcc
     1681 gccgtctgcg tgcaatggaa aatgacggtg aattggtgtt caccaaaggc aaacgctatg
     1741 cgttgccgga aaaaatggat ttaatcaaag gtacagttat cggccatcgt gacggttacg
     1801 gttttttgca agtggaagga cacgaaaaag gggcgactaa aagcgaagat tggtttattc
     1861 ccaacgccca aatggtaaag gtaatgcacg gtgactttgt gctggcacaa ccaaacggca
     1921 cagaccgcag aggtcggaaa gaagtccgca ttgtgcgagt gttggaggcc cgtaagaaac
     1981 agattgtcgg gcgttttttc cttgaaagcg gtatcggttt tgttgtgcct gatgacagcc
     2041 gcgttaacca agatattctc attccggatg aacaccgtat gggggcgaga atggggcaag
     2101 ttgtggtggt ggaattacag gaaagaaaag cgagttttag ccgcccggtg ggaatcatta
     2161 ctgaaattct aggcgataat ttagcgccgg gaatggaaat tgaaattgcc ctacgcaatc
     2221 acgatattcc gcacatttgg ccggaagggg tagaaaaaca aatccgccaa tttagtagcg
     2281 aagaagtgcc ggaagaagcc aagcaagggc gggtggattt gcgagatctg ccactgatta
     2341 ccattgacgg cgaagatgcc cgagatttcg atgatgctgt atttgccaaa aaagagggca
     2401 acggctggcg gttatgggtg gcgattgccg atgtaagtta ttatgttcgc ccaaaaaccg
     2461 cattagattt ggaagcccta aatcgtggta actcggtcta tttcccgaat cgggttgtgc
     2521 caatgttgcc ggaagtgctt tccaatggct tgtgttcact caatccacag gttgacaggc
     2581 tctgcttggt ggcggaaatg tcggtttcca gcaaagggga attacaagat tatcaattct
     2641 acgaagcggt aatgaactct cacgcccgtt taacttacac taaagtgtgg aaaatgttgg
     2701 aaggtgatga agccttgcgt gaacgctatg ctccattagt gccgcatatt gaagaactct
     2761 atgcaatgtt ccaaacctta atgaaagctc gccataaacg aggggcgatt gaatttgaaa
     2821 ccattgaaaa tcaatttatt ttcaatccgc aagggcgaat tgagcgaatt gagccgttaa
     2881 tccgcaacga tgctcataaa ttgattgaag aatgtatgat tttagccaat attgctgccg
     2941 ctcgttttgt ggaaaaagcg aacgaaccgg cgttatatcg gattcacgat aagccgagtg
     3001 aagaaaaatt gctcagtttt aaatcctttg tgcgtgagtg tggcttaacc tgggacgtag
     3061 gcttagatcc aaccccaaaa gattacggtg tactactgga gcaaattgcc gaacgtgccg
     3121 ataaagagtt gattcaaacg atgttgctcc gctcgctgaa acaagcagtg tatgcggcgg
     3181 ataatatcgg gcatttcggc ttggcattaa ccgaatatgc tcattttacc tcgccgattc
     3241 gccgttaccc ggatttactg ttacaccgtg caattaaata tctgatcgaa aaaggcaaag
     3301 gcaacactcg ctactatacc gatggcggtg gttatcacta caagttagat gatatggacg
     3361 aattcggcga taaatgttct gccaccgaac gccgagctga tgaggcaacc cgagaagtgg
     3421 cagattggct gaaatgcgaa tttatgcaag atcatcttgg cgaagagttt gatggcgtga
     3481 tttcgagtgt taccggcttt ggcttatttg taaaactcaa tgagctttta attgacggat
     3541 tggttcatat ttcaacgctg gataatgatt attaccacta tgatgcggac cgacaacgtt
     3601 taatcggtgg cagtgggatc atctatcgtt taggcgatgc agttagagta aaagtaatca
     3661 atgtgaattt agacgagaaa aaaattgatt ttgagttact caccggtaat aagaaaaccg
     3721 gcaaaaccgc caagaaaaaa gcaaaagcga cagaggttcc tgttttcaaa gagcctaaaa
     3781 cggtaaaaaa agccaaaaaa gtcgctgaga aaaaaccggc aaaatctgca aaaaaacgga
     3841 caaaaacgac cgctagtaaa tcaaggaaaa aatagcaaat ggattacaaa aaacaaattt
     3901 tattcagcct tttatttgct ttagtaattg caataataag ctattttttg tttacctata
     3961 tcccgtttga ttgtagcgat ctgagcaaac tcaacgattc acaacgttta gagtgccgaa
     4021 ctgccgaatt tctgggcgtt tattactggc tgccgcacac taccacgctg tttttcggct
     4081 cggtgttatt atattgggcg gtttatggca tgatttcatt agtgcaagca gtgctcaaac
     4141 gctaacaagc agttttgttt ttgcaaaaag ttgcaaatct catctgaata atccttccaa
     4201 gatcaaaggt ctatcaaaaa agatagacct ttattgtgta aataaactaa aactccttga
     4261 tagatgtatc acatatctat aaaattccag caattaagtg ggaaaaagtg gtaaattgtg
     4321 gaacttttcc ttaaatttaa cctcatttaa aaaggtaaat cagtaaaatg tttcgtggtg
     4381 caagttcaat cagcattgat agcaaagggc ggatcgctat tccgacccgt tatcgtgccg
     4441 agctattgga aaaacatcac gggatcttag tttgcactgt ggatatccgc cagccttgtt
     4501 tgttgcttta cccacttcac gaatgggaaa tggttgaaca gaaattgttg gcactatcta
     4561 attttgaccc tgttcaacgc cgtattcagc gagtaatgca aggctttgct accgaatgtg
     4621 aaatggattc ggcagggcga atactgctta gccctacact tcgccaacac gcacaattag
     4681 agcaacaaat tatgctggtt ggacaattaa acaaatttga aatttggcaa gataaacaat
     4741 ggcaagcaca aattgccgaa gatcttgctt ttggcagttc ggcagaaatt ttagactgcg
     4801 aagcattgaa aaacctgtct ctctagtaat tggaaattga gatgagcgag aacccaaaac
     4861 atattacagt attattgcac gaagcggttg acggcttggc aattaagcct aacggtatct
     4921 atattgacgg tactttcggg cgtggcgggc attctcgctt gattttatcc aaactgggcg
     4981 aaaatgggcg attaatcgca actgatcgtg acccacgagc gatagccgaa gctcaaacga
     5041 ttagtgaccc tcgttttcaa attgaacata cggcattttc tgccattccc gaactgtgtg
     5101 aacgaatggg gttggtgggc aaaattgacg gtattttatt ggatttaggt gtgtcttccc
     5161 cgcagcttga cgaagccgaa cgaggcttta gttttatgcg tgacgggccg cttgatatgc
     5221 gaatggatac caccaaaggc ttatcggcag ccgagtggct tgcccaagtt tcggcagaag
     5281 atttagcttg ggtattgaaa gaatttggcg aagagcgttt tgccaaacgg attgcacaag
     5341 cggtcgtttc ttacaataaa tctgcaaatg aaaaaatcag ccgcactttg cagcttgcgc
     5401 aaattattgc ggatgcggtg ccgtttaaag ataagcacaa acaccctgca acccgttcgt
     5461 tccaagcaat tcgcattttt atcaatggtg aattagacga gctggaaaaa gctttaaatt
     5521 ccgcattaac ggtgttagcc cctgaagggc gtttgtcgat tatcagcttt cattctctag
     5581 aagaccgaat ggtgaaacag tttgtgcgta agcatagtaa aggaatggac gtaccccgtg
     5641 gtttaccgat tttagaagca gagctaacca aaaatattcc gctgaaaacc attggcaaag
     5701 cgattatgcc gagcgaagcc gaaattgaag caaatgcccg ctcacgcagt gcggtattgc
     5761 ggattgccga aaaacgctaa cagtaaatag ggaagaatat gtcgaacgaa cgttatccgt
     5821 tacatcaaat catcattgat gatatcttta gccataacaa agtggctctt ttattgttga
     5881 ttggtgtagt gatttcagca gtggctacga tttggataac ccaccagact cgtttatcgg
     5941 tgagcgaaca agggcaactg attcaagcaa accaaaagtt ggaaagccaa tatactaatc
     6001 tgcaattaga agaaaacagc agaagcagtc gggcaagagt tgatgccgcc gctaaatcgt
     6061 tcggattaca gccgattaaa aaagagcaag aaattatttt agttgaataa aaaatggtta
     6121 aatcagttaa attaaaacgt aagcaagaag cccctgtcgc aaaagcagag cctcaacaag
     6181 cagaaggtaa aaaaacaccg agttttttac ctactcgctt tagagtggtt gtgtttttta
     6241 tgctattaat ggttggtggc ttactagcac aaaccgccta tattcagctt tttgactctg
     6301 aaagattaat taaagaggct aataaccgct cacttcgtac taaagaactc caatttaccc
     6361 gtggacgtat tttagatcgt aacgggcgtt ttctctctat tagtgtgcca atgtactcat
     6421 taacacttga cccgagagaa tactttgata ctaagctgcg tcgttctaac gaaagctggc
     6481 gtgccttagc gattgaaatg gaaacatcaa aaggtaaaat tgaggca
//
LOCUS       DANLXB010000144         6471 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLXB010000144 DANLXB010000000
VERSION     DANLXB010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6471
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            9..2666
                     /gene="aceE"
                     /locus_tag="PXD41_001983"
     CDS             9..2666
                     /gene="aceE"
                     /locus_tag="PXD41_001983"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL6289486.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
     gene            2870..4780
                     /gene="aceF"
                     /locus_tag="PXD41_001984"
     CDS             2870..4780
                     /gene="aceF"
                     /locus_tag="PXD41_001984"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL6289487.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            4980..6404
                     /gene="lpdA"
                     /locus_tag="PXD41_001985"
     CDS             4980..6404
                     /gene="lpdA"
                     /locus_tag="PXD41_001985"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL6289488.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
BASE COUNT         1971 a         1227 c         1506 g         1767 t
ORIGIN      
        1 agaatactat gtcagagaac ttaagaaatg acgtagatcc aatcgaaact caggattggt
       61 tagcatcact cgattcatta attcgtgaag aaggtttaga gcgcgctcaa tttatcattg
      121 aacaagttat tagccaagct cgtgcaggtg gcgtggcatt accaacaggc gtaacaacag
      181 attatgtcaa tactatccct gtttccgagc agccagctta tccgggtgat cataaaatcg
      241 aacgtcgtat tcgttctgcg gtacgttgga atgcgattgc ggcagtactt cgtagccaga
      301 agaaagatct tgacttaggt ggtcatattt caactttcca atctgcggca actatgtatg
      361 aagtgtgttt taaccacttt ttcaaagcac caaccgaaaa agatggtggt gatttagtgt
      421 tcttccaagg ccacgcagca ccgggtatgt atggtcgtgc gttcttagaa ggtcgtatta
      481 ccgcagaaca aatggataac ttccgtcaag aagcatttac agacggttta tcttcttacc
      541 cacaccctaa attaatgcct gaattttggc aattctctac cgtatctatg ggtttaggac
      601 cggtaaatgc tatttaccaa gctcgtttct taaaatattt agaaaaccgt ggtctaaaag
      661 atacttcggc tcaaaaagta tatgcattct taggcgatgg cgaaatggat gaaatcgaat
      721 ctaaaggtgc attatcattc gccggtcgtg aaaaattaaa taacttaatc ttcactatta
      781 gctgtaactt acaacgttta gacggtccgg ttaacggtaa cggcaaaatc gtgcaagaat
      841 tagaagcact ctttaccggt tgtggctggg aagtgattaa agtgttatgg ggtagtggtt
      901 gggataaact gcttgaaaaa gatacttcag gcaaacttaa acagttaatg atggaagtgc
      961 ttgatggtga ctatttaacc ttcaaatcca aaaatggtgc ttacgttcgt gaacacttct
     1021 tcggtcgtta ccctgaaact gcagcattag ttgctgatat gacagacgat gaaatttggg
     1081 cattacgccg tggtgcacac gattctgaaa aactttatgc agcctatgca aaagcacaaa
     1141 aatcggacaa accagttgta attttagctc accaagtgaa aggctaccgt attcctgaag
     1201 cggaaagtaa aaatactgct caccaatcga aaaaaatgtc attagacagc ttaaaaggct
     1261 tccgtgacta cttcgagcta ccattaaccg atgagcaagt agaaagccta gagtatgtaa
     1321 gattccctga aggttctgaa gagtacaact acttacacgg acaacgtaaa gccttaaacg
     1381 gttatgtgcc tgtacgtaaa ccgaaattta cggttgattt caaagtgcct gaattaagcg
     1441 aattccaagc attattggat gagcaaccac gtggtatttc aaccacaatg gcgttctctc
     1501 gtgtattgaa tactttattg aaagataaaa atatcggtca gcaaatcgta cctattattg
     1561 cggacgaagc ccgtactttc ggtatggaag gtttattccg tcaaatcggt atttataacc
     1621 cacatggtca aaactatgta ccgtcagacc gtgatttagt agcttactac cgtgaagcaa
     1681 aagatggcca agtgttacaa gaaggtatca atgagttagg tgcaacagcc tcttgggtgg
     1741 cagcagcgac ttcttattct gttagcaact taccgatgat cccattcttc atctactact
     1801 caatgtttgg tttccaacgt gtaggcgata tgatgtggtt agccggtgac caattagctc
     1861 gtggctttat gattggtggt acttcaggtc gtacaacatt aaacggtgaa ggtttacaac
     1921 acgaagatgg tcatagccat attcaagcag gtgtaatccc gaactgcgtc acttatgacc
     1981 ctgcatttgc ctttgaggtt gcggttattg ttcaagacgg tattcgtcgt atgtatggtg
     2041 aaaaccaaga agatatcttc tactacatta ctaccttaaa tgaaattacc gaacagccgg
     2101 caatgccggc aggtgcggaa gaaggtatcc gtaaaggttt atataaattt gaaaccgttg
     2161 agggtaaagg taaaggtcac gtacaattat taagctcagg tgcaattatg cgtcacgtgc
     2221 gtgcagctgc acaaattctc gcgaatgact acggcattac agcagatgta ttctcagcac
     2281 catcattcaa tgaattaggt cgtgatggag cagatgtggc tcgttggaac ttattacacc
     2341 caactgaaac accacgtgta ccgtacgttg ctcaagtgtt acaagattta ccgactgttg
     2401 cttcaaccga ctatatgaaa atgtacgcag agcaaatccg tgcttatgta ccaagtaaac
     2461 actatcacgt gttaggtaca gacggtttcg gtcgttcaga cagccgtgca aacttacgtg
     2521 aacacttcga agttgatgag cgttatgtag tagttgcagc cctcgctcaa ttagcgaaag
     2581 aaggtacagt tgaaaacaaa gtggttgcgg aagctattac taaattcggc ttaaatgtag
     2641 atcgtattaa cccattatat gcgtaatttc taatactctc tcccttgatg ggagagagac
     2701 agctaaaggt ttcgtttaga aacttttagc agagagggta ttagttttat ttgcaaaaat
     2761 gttgagaaaa tcaaccgctt gcattccctt ctccctgatt tttcttctta caaagaaaaa
     2821 tctgtccctc ccacaatggg agagggggta actcaagaag gatttcaaaa tgtcaaaaca
     2881 aattaatgtg ccggacatcg gttcggatga agtcagtgtg actgaagtga tggtaaaagt
     2941 tggtgatact atttcagtag atcaatcaat tattaacgta gaaggcgata aagcctctat
     3001 ggaagtgccg gctcctgaag caggtgtggt aaaagaagtt ttagtgaaag tgggtgataa
     3061 agtttcaacc ggttcaccaa tgttaatttt agagtcagca gatgctgctc ctgctcaaga
     3121 agcaccaaaa gcagaagcag ctcctgctgc tccagtagca acaacttcag ccgttgttga
     3181 agtaaatgta cctgatatcg gtggcgatga agttaacgta accgaaatta tggttaaagt
     3241 aggtgatagc gttgaagtgg atcaatctat catcaacgtt gaaggtgata aagcctcaat
     3301 ggaagtgcct gcaccggttg ccggcgtagt aaaagaaatc ttaatcaatg tgggtgacaa
     3361 agtttcaact ggtaaattga ttatgaaatt tgaaacggct tccgcagcta cagcacaatc
     3421 tacaccggtt gcggaagctg ctccagctca agcttcggca tcagcgatta aagatgtaaa
     3481 tgtaccggac atcggtggtg atgaagtaaa cgtaactgaa attatggtta aagtgggtga
     3541 ttctgtttca gaagaacaat ctttaatcac ggttgaaggt gataaagctt caatggaagt
     3601 tccggctcca tttgccggtg tggtgaaaga aattttagtg aaatcaggtg ataaagtttc
     3661 aaccggttca ttaattatga aatttgaagt agcgggtgcg gcaccggctc cggcggctgc
     3721 tcaagcggct tcagctcctg ctcctgctcc acaagcagca gctccggcga aagctgacgc
     3781 agctccggca ggtcaaaacc aatcaggttt aagccaagaa caagtggtgg cttcagctgg
     3841 ctatgcacac gcaacaccgg taattcgccg tttagctcgt gagtttggtg taaacctaga
     3901 caaagtaaaa ggtacaggtc gtaaaggccg tatcgttaaa gaagatattc aagcatacgt
     3961 taaaacggct gttcaagtat ttgaaaaaca aggcggaaca gcagcggcag caacaggtgc
     4021 ggcaaacggt gcaggcttag gtttattacc gtggccgaaa gtagatttca gcaagtttgg
     4081 tgaagttgaa gaagttgaat taagccgtat caataagatt tccggtgcga acttacaccg
     4141 taactgggta atgattcctc acgttacaca tttcgatcgc acagacatta ccgagttaga
     4201 aaacttccgt aaagagcaaa ataaagaagc ggaaaaacgt aaattagacg tgaaaattac
     4261 ccctgtggtc ttcattatga aagcagtggc aagtgcatta gaagccttcc ctcgtttcaa
     4321 cagctcaatt tctgaagatg cacaacgttt aaccttgaaa aaatacatca atatcggggt
     4381 tgcggttgat acgccaaacg gtttagtggt gccggtgttc aaaaatgtga acaaaaaagg
     4441 cattatcgaa ctttctcgcg aattaatgga agtctcgaaa aaagcccgtg aaggtaaatt
     4501 gacagcatct gatatgcaag gtggctgttt cacaatttca agtttaggcg gtattggtac
     4561 aacgcacttt acgccaatcg tgaatgcacc ggaagtggct attttaggtg tgtctaaatc
     4621 tgaaatgcaa ccgatttgga atggcaaaga gtttgaacca cgcttaatgc ttccgctttc
     4681 attatcattc gaccaccgtg tgatcgatgg tgctgatggt gcgagattct taagctatat
     4741 taatagcgtg ttggcagata ttcgtcgttt agtgatgtaa ttcggtaaag ctcctcctaa
     4801 aaaagtccct ctttagaaaa gaggggtagg gggagatttg atagacgtaa tttacgaaga
     4861 gaataaatta tttggtagaa atttgtgttt gattgattgc tctctcactt cgctttatat
     4921 tctgccaaat ctcccttacc cctctttgct aaaggggggg aataaaaaga ggaaaaacta
     4981 tgagcaaaga aattaaaacc caagttgtcg tacttggtgc aggtccagca ggttactcag
     5041 cggcattccg ttgtgccgac ttaggcttag aaacagtaat tgttgagcgt tattcaacct
     5101 taggtggtat ttgcttaaac gtaggttgta tcccttctaa agcattatta cacgttgcaa
     5161 aagtaattga agaagctaaa aatgcagtac acaacggtgt gacctttggt gagccaacga
     5221 ttgatttaga tcaggtacgt gctggtaaag aagccgttgt ttcaaaatta accggtggct
     5281 tagcaggaat ggctaaggct cgtaaagtga cagtagtaga aggcttggct gcatttactg
     5341 gtccgaatac gttagtcgct cgtgatcgtg acggcaatcc tacaactatc acgttcgata
     5401 atgcgattat cgcagcaggt tctcgtccga ttcaactacc atttattcca cacgaagacc
     5461 cacgagtttg ggattcaacc gatgctctta aattaaaaga agtaccgaaa aaactcctta
     5521 ttatgggtgg tggtattatc ggtttagaaa tgggaacggt atataacgcg cttggttcag
     5581 aagtggaagt ggttgaaatg ttcgaccaag taattcctgc tgcagataaa gatgttgtag
     5641 cgatttacac caaacaaatc gagaaaaaat tcaagctaat gcttgaaacc aaagtaaccg
     5701 cagtagaagc taaagatgac ggtatctatg tatcaatgga aggtaaggct tgcaacgata
     5761 ctaaacgtta tgatgcggta ttagtcgcta tcggacgtgt gccaaacggt aaattaattg
     5821 atgccggtaa agctggagtg gaagtagatg agcgtggctt tattcgtgta gataaacaaa
     5881 tgcgtaccaa tgtgccacac atctttgcta ttggtgatat tgtcggccag ccgatgttag
     5941 ctcacaaagg tgtacacgag ggacacgtgg cagcagaagt gattgcagga atgaaacatt
     6001 acttcgatcc gaaagtcatt ccgtccatcg cttatactga accagaagtg gcttgggttg
     6061 gtaaaactga gaaagagtgt aaacaagaag gcttgaacta cgaagtggcg aaattccctt
     6121 gggctgcttc aggtcgtgcg attgcttctg aatgctcaga aggtatgacc aagttaattt
     6181 ttgataaaga tactcaccgt gtattaggtg gtgcgattgt tggtagcaat ggtggcgaat
     6241 tattaggcga aatcggtctt gcaatcgaaa tgggctgtga tgctgaagat atcgcattaa
     6301 ccattcatgc tcacccaacg ttacacgaat cggtaggatt agcggcagaa gtatttgaag
     6361 gttcaattac agacttacca aatgcgaaag ccaaaaagcg ttaatcagat tatttaatct
     6421 ctaaaaaata agcggttgta ttttgtaaat tttttgcaaa atacaaccgc t
//
LOCUS       DANLXB010000145         6292 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLXB010000145 DANLXB010000000
VERSION     DANLXB010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6292
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..984
                     /gene="potA"
                     /locus_tag="PXD41_001986"
     CDS             <1..984
                     /gene="potA"
                     /locus_tag="PXD41_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL6289489.1"
                     /translation="GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQ
                     SYALFPHMTIFENVAFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQ
                     RIAIARAVVNKPKVLLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEAL
                     TMSDRIIVMNAGKIAQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKAN
                     VEGRICNIKVEDLEVQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTL
                     ESSVRLDHNGMNVLVSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            971..1834
                     /gene="potB"
                     /locus_tag="PXD41_001987"
     CDS             971..1834
                     /gene="potB"
                     /locus_tag="PXD41_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL6289490.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            1834..2601
                     /gene="potC"
                     /locus_tag="PXD41_001988"
     CDS             1834..2601
                     /gene="potC"
                     /locus_tag="PXD41_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL6289491.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
     gene            2802..3725
                     /gene="oppB"
                     /locus_tag="PXD41_001989"
     CDS             2802..3725
                     /gene="oppB"
                     /locus_tag="PXD41_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL6289492.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            3740..4639
                     /gene="oppC"
                     /locus_tag="PXD41_001990"
     CDS             3740..4639
                     /gene="oppC"
                     /locus_tag="PXD41_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL6289493.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            4649..6244
                     /locus_tag="PXD41_001991"
     CDS             4649..6244
                     /locus_tag="PXD41_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289494.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
BASE COUNT         1788 a         1187 c         1332 g         1985 t
ORIGIN      
        1 ggttgtggta aaacaactgc gttacgttta attgccggtt ttgaagattt aactgaaggt
       61 tcaattattc ttgatgggca agatgtttct aacgttccgg cggagcaacg cccggtaaac
      121 accgtattcc aaagctatgc ccttttccca catatgacga tttttgaaaa cgtggctttc
      181 gggctgcgta tgcaaaaagt gccaaatgct gaaattgagc cacgtgtgat ggaagcatta
      241 cgaatggtgc gtttagaaga ccgcgctcaa caaaaaccgg ctcagctttc cggtggtcag
      301 caacaacgta ttgcaattgc ccgtgcggtg gtaaataaac cgaaagtatt gttgttagac
      361 gaatcgcttt ctgcgttaga ttataaattg cgtaaagaga tgcaaaatga attaaaagca
      421 ttgcaacgtc aattaggcat tacctttatt tttgtgaccc acgatcagga agaagcctta
      481 accatgtctg atcgtattat cgtaatgaac gctggtaaaa tcgctcaaga cggtacacca
      541 cgtgagattt acgaagagcc aagtaactta tttgtagctc gtttcatcgg cgaaattaac
      601 gtttttgatg caactgtaat tgagcgtgtt gatgcaacta atgtaaaagc aaacgtagaa
      661 ggtcgcattt gcaatatcaa agtggaagat ttagaggttc agccgaacca aaaattaaaa
      721 gtattgttac gccctgaaga tattgtgatt gaggagttag acgaaaacga aagctcgaaa
      781 gcaattatcg gtcatattat cgaccgtaac tacaaaggta tgacattaga gtctagcgtg
      841 agattagatc ataacggtat gaatgtattg gttagcgagt tcttcaatga agacgatccg
      901 aacattgacc acgaagtggg acaaaaagtt gctcttactt ggtatgaagg ctgggaggtt
      961 gtgttaaacg atgaaggcga ataacaaatt ccaaaatggt gcggtcgcaa ctattttcgg
     1021 ttggttatta cttttcgtat tagtgccgaa cgtactcgtt ttaatcatca gcttcttaac
     1081 agaaaaccgt caaagtcagt attttgtgga ctttgcattt agttttgatg cttataaatc
     1141 actgtttaat gacacctatg cagcagtatt gtggaactcg ctatatatgg cgggcattgc
     1201 cacctttttc tgtttgatca tcggctatcc ctttgcattt tttattgcca aaatgccgga
     1261 aagaattcgt ccgtttttac tgtttttagt agttctaccg ttttggacta actcactgat
     1321 tcgtatttat ggcattaaga ttttcttagg cgtaaaaggc tttttaaatg aaagcttgat
     1381 ggctttaggt ataatcagcg agccaatgcg tttattaaac tcagaaattg cgattattat
     1441 tggtttagtt tacattctat taccttttat gattctaccg ctttattcat caatcgagaa
     1501 aattgataac cgcttactag aagctgcaaa agacttaggt gcaaacgcct tccagcgttt
     1561 tattaaagtg actattccat taacaatgcc gggcattgtc gcaggttgtt tattagtatt
     1621 acttccggca atgggtatgt tctatgtggc agatttatta ggcggcggta aaacaccgtt
     1681 agtaggtaac attattaaga gcttgttctt aaataccaac caatttgcat taggttcagc
     1741 agtaagtatt gcattaacta tcttaatggc attaatgctt tatgtttact atcgtgcaaa
     1801 caaattatta aataaaaagg tggagcttga ataatgaaaa agatgtttag aaaccttttt
     1861 atgttggttg tttttgcata tctctatatt ccaattatca ttttagtgat caactccttt
     1921 aatgaagacc gctttggatt aaattggaaa ggctttactt ggaattggta tgagcgttta
     1981 ttcagtaatg atacgcttgt acaagcaaca ttgaactcat taactattgc gttctttgcg
     2041 gcaacattct caaccatttt aggggcatta acctctattg cgctttaccg ttaccgtttc
     2101 cgtggtaaaa agctagtggg cggaatgtta ttcgtggtaa tgatgtcgcc tgatatcgta
     2161 atggcggtat ctatgctcgt attatttatg atcttaggta tcaagctagg ctttatttcg
     2221 ctattaattg cacacattac tttctgtttg ccttatgtgg taattgcaat ttcctcacgc
     2281 ctcagcgatt ttgacggcaa aatgctagaa gctgcaaaag acctaggtgc aagtgaagtg
     2341 actattttgc gtaaaattat tttaccactg gcattacctt cgattatttc aggctggttg
     2401 ttaagcttta cgatttcgtt agatgacgtt attgtttcat ctttcgtgac aagcccaagc
     2461 tacgaagttt taccactgaa aattttctca ttggttaaaa caggtgtaac acctgaagtg
     2521 aatgcactag caactattat gattattttc tcattaacat tagtggtatt aagccagtta
     2581 gtagtgaaga aaaaagtcta aaaatcacta aaaatcgtat acataaatca gcactttaaa
     2641 gagtattaaa gtgccgattt ttttacaaaa ataagctaaa aaaacaaccg cttaagaata
     2701 atgaattctt ataaaaatag ccataactaa tcaatatctt tacaaagccg ttaatttacg
     2761 ctattaattg cctaccaata taactaaaaa gagtggtgct tatgctgaag tttattttta
     2821 aacgtcttct tgaggcgatt ccaaccctac taattctgat taccttttcc tttttcctga
     2881 tgcggcttgc cccgggtagc ccatttacca gtgagaaagc ctatccgccg aaagtaatgg
     2941 caaatatcga ggcaaaatat cacctgaatg aaccgctgta taagcagtat tttctttata
     3001 tggaaaatct gtcaaaaggc gatttcggtc catcttttaa atataaagat caatcggtaa
     3061 ataatctgat tgcttctgcg tttcctgttt cgataaaact gggcattact gcctttattt
     3121 ttgcggtgct tatcggttta accgcaggaa ctatcgctgc acttaagcaa aatagtaaat
     3181 gggattattt agtgatgggc ttttcaatga cgggtattat tatgccgagc tttgtctttg
     3241 ctccgctgtt ggtactcatg tttgcgattt atctcaaatg gttgcctgcc ggtggttgga
     3301 acggtggtca gctctactat atggttttac ctgttctctc tttaaccatt agctatgttg
     3361 ccggcattgc ccgtattact cgtggttcaa tgattgaggt gttgcactct aattttattc
     3421 gcaccgctaa ggcaaaaggc ttgccaatgc gtaaaattat tttcaaacac gctttgcgtc
     3481 cggcattgtt gcctgtgatc acttatttag gcccggcttt tgttggcatt attaccggct
     3541 cgatggtaat tgaaagcgtg tttggcttac cgggaatcgg gcagttgttc gtaaacggag
     3601 cattaaatcg tgactattca ttagtattaa gcctaaccat tttggtaggt acgctcacca
     3661 ttttatttaa tgcgattgtt gatattttat atgcggtcat cgacccgaaa attcgttatt
     3721 cataggagta aagcggaaaa tgcaaaattc ttcaaaaaat caaccgcttg ttgaggttac
     3781 ctcaaccatt caaggacgaa gtttatggca agatgcacgc cgccgttttt tccgaaataa
     3841 ggcggctgtg gcaagtttga ttattctttg ttgtattatt ctttttatta cctttgcccc
     3901 aatgctaatg ccgtttagct atgaagatac cgattggaat atgatgggga ttgctccgga
     3961 ttttgaatct caacactatt tcggtactga ttcttcaggg cgtgatttgc tggttcgagt
     4021 tgcaatcggt ggacgcattt cgttaatggt agggattgcc ggtgcattaa ttgcggtgct
     4081 tatcggtaca atctatggag caatttccgg ttatttcggc ggtaaagtcg atatggtgat
     4141 gatgcgtttt ctggaaattt taagctcatt cccatttatg ttcttcgtaa ttttgctggt
     4201 tacgttcttc gggcagaata ttttcctgat tttcattgca atcggtatgg tagcgtggct
     4261 gaaccttgcc cgtattgtac gtggtcaaac tctttcgctt aaaaataaag agtttgtgga
     4321 agcagcgatt gtgtgtggcg tttcccgccg tcaaattatt tggcgacaca ttgtgcctaa
     4381 cgttttaggc ttagtggtgg tttatgcctc ccttgaagta ccatctctga ttttgtttga
     4441 atcgttctta agtttcttag ggcttggtac acaagagccg atgagcagtt ggggggcatt
     4501 attaagcgac ggagcggcac aaatggaaac ctcgccttgg ctactggctt tccctgcctt
     4561 tttcttatgt ttaacactgt tttgttttaa ttttattggt gatggcttgc gtgatgccct
     4621 cgatccaaaa gataaataga ggtttagaat ggaattatta gcagtaaata atctcgatgt
     4681 ttatttaaaa acggacgaag aattagttca cgcagtgcgt aatgtctcgt tctcgattga
     4741 aaaagggcaa acccttgcga ttgtggggga atcgggttcg ggtaaatccg ttacttcaat
     4801 ggcaattatg cagttattgc ctaaaaatat cgtctcattc ggtgaacgct caagcatcat
     4861 ttttgaagaa caaaacttgc ttactctatc tgaaaaagca atgcaaacag ttcgaggtga
     4921 tcgcatcggt atgattttcc aagagccaat gacctcactc aatccttata tgccgattgg
     4981 caagcaggtt gctgagacgg ttcaaaccca taatccgcaa atcagcaatg ccgaagcgga
     5041 aaaaatggtg ttggaaactt tgcaaaaagt aaaaattccc gatgcggaaa agaaaatgat
     5101 ttgctatccg cacgagtttt ccggcggtca gctacaacga attatgattg caatggcaat
     5161 tatcaacaaa cccgatttat tgattgccga tgagccgacc accgccctgg atgtcacaac
     5221 ccaagcggaa attttggatt taatgcacga cttacagcgt gatatgggaa tggcgattat
     5281 cttaatttcc cacgatttac gcttggtgca taaatacagt gacttagtct gcgtaatgca
     5341 aaacggcgaa attattgagc gaggcgaaac ggaaactgtg ttcaccaatc cgcaacatcc
     5401 ttatacggtg gagctactta ccccgattcc aactaattta aaaggggaat taccgccaaa
     5461 tgcaccaacc ttgcttcagg gtgagcatat taaggtagat tatattttaa aacgctcgct
     5521 attcggtaag ccgaaaaagg tgtttaatgc gttaaaagat atttcattgc acttgaaaac
     5581 cggcgaaacg ctcggcattg taggcgaatc cggctccggg aaatctaccc ttgggcgtgc
     5641 cattatgcag attttagatt atcgcggcaa tattacattt gcaggtaaga cactggctaa
     5701 tctgaataaa gccgaacgtc aagccctgaa aaaagatatg caaatggtgt tccaagaccc
     5761 gttcaactca ctttctcctc gcttaacagt tggggaaatt attgctgagg gcttaaccgt
     5821 acattgccct caaatgagca aaaccgaacg gcgggaaaaa gtaatgaaaa tgttggaaga
     5881 ggttaatctc aaccctgcaa tgattaaccg ctatccgcac gaattttcgg gcggacaacg
     5941 ccagcggatt gcgattgcaa gggcaatcat tttagagccg aaatttgtat tgcttgatga
     6001 gccaacctca gcacttgacc gctctactca gatcactgta attgaattgc ttaaccgctt
     6061 acagaaaaaa tacggcttaa gttatatttt catcagccac gatttggcgg tcatcaaggc
     6121 acttagcgac cgagtgattg taatgagcca aggtgagatt gtagaaagcg gtgatgtcac
     6181 tcaaattttt gaaaatccac aacaagaata caccaagcgg ttgattttag cctctaattt
     6241 gtaacccctt ccacaaggtc ttattctacc aaaaaacaag accttgtcat tt
//
LOCUS       DANLXB010000146         6290 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLXB010000146 DANLXB010000000
VERSION     DANLXB010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6290
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            161..2077
                     /gene="iolC"
                     /locus_tag="PXD41_001992"
     CDS             161..2077
                     /gene="iolC"
                     /locus_tag="PXD41_001992"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL6289495.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2366..3706
                     /locus_tag="PXD41_001993"
     CDS             2366..3706
                     /locus_tag="PXD41_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL6289496.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            3709..5049
                     /locus_tag="PXD41_001994"
     CDS             3709..5049
                     /locus_tag="PXD41_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6289497.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            5187..6011
                     /locus_tag="PXD41_001995"
     CDS             5187..6011
                     /locus_tag="PXD41_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6289498.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(6055..6282)
                     /locus_tag="PXD41_001996"
     CDS             complement(6055..6282)
                     /locus_tag="PXD41_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL6289499.1"
                     /translation="MILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSALKKLG
                     AVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
BASE COUNT         1786 a         1326 c         1406 g         1772 t
ORIGIN      
        1 tgtgatccag ttctcatttc tgcgaagtta ttgccttatt tttcaaagtg agagctagat
       61 cacagaaatg ataatttaaa tagaataaat ttgaaataaa aatttcattt ttgtatgatg
      121 tatagtgtgt attcaaattt acttgttgta aggagcggtt atggcaacag ttaatcatca
      181 agatcgtcca ttggatctta tctgtttagg gcgtgtggcg gtggactttt atgggcaaca
      241 aatcggttcc cgtttggaag agatgaccac attttcaaaa tacctcggcg gctcgtcagg
      301 caatgtggct tacggtacgg cggtgcaagg tttacgttct tcaatgctgg caagggtcgg
      361 tgacgaacat atggggcgtt ttctacgtga agagctacaa agcgtaggcg tggacaccag
      421 ccatttaatt accgataaag aacgcttaac tgcactggtt attctcggca ttaaagataa
      481 agagactttt ccgctgattt tctatcgtga taactgtgcg gatatggcaa tcaccaaaga
      541 cgattttagc gaagcctata ttgcttccag ccgttgctta gcaattaccg gcacgcacct
      601 gtcaaaccct aaaacccgtg aagctgtgct gaccgcactc gaatatgcgg gtagaaatga
      661 ggtaaaacga gcgttagata ttgattatcg ccctgtgtta tggggattaa cctcactcgg
      721 tgatggcgaa acccgttata tagacagtgc cgaagtcacc aaatcgctac aagaagtatt
      781 gcaccatttc gatctgattg tcggcacaga ggaagaattt catatcgcag gcggttcgac
      841 cgatactctc actgcactca aaaatgtgcg taaagtctct aatgccgtat tagtgtgcaa
      901 acgtggggca ttagggtgtt cagtatttga aggcgagctg ccgaatgatt tagacggtgg
      961 cttgaatgtg tacggcgtgc gtgtagaagt gctgaatgtg ctgggtgcag gcgatgcttt
     1021 tatgtcgggc ttactgcgtg gctacttaaa taacgaaggt tgggaacaag cgtgccacta
     1081 tgccaatgcg tgcggagcgt tagtggtatc tcgtcacggc tgttcaccgg caatgccgac
     1141 caaacgtgaa cttgacgatt atttaacccg tgcagagagt gtaccacgtc cggatttaga
     1201 tgagcgttta aaccacttac accgtgtcac cacccgcaaa aaacagtggg aaaatctctg
     1261 tatttttgct tttgatcacc gcaaacagtt ggtggatatg gcaaataaag tcggtgcaga
     1321 tcttgctcgc ataccgaaac tgaaacagct gctattaaaa gcgatggaac aaaccgcaac
     1381 tcaatccggc ttaccacaaa atcaagcagg gatcctagcc gataccactt tcgggcaaga
     1441 tgtacttaat gagattaccg gcaaagatta ctggattgcc cgcccgattg aagagccgtc
     1501 ttcccgcccg ctggaattag agtatggaga tttaggctct cagctagcat cattcccacg
     1561 cgatcacgtc atcaaatgct tggcatttta ccacccgaat gatgaaagcg gtttaaaagc
     1621 ccgccaagat cgcaagttaa aagaggtgta tcaagcctgt tgccgtaccg gtcacgagct
     1681 attgttggaa attattctgc ctgctgatat gccacagagt gaggctttct ataaccaagc
     1741 gatagcacat ttctaccaac ttggcattaa gccggaatgg tggaaattgc cggatgtttc
     1801 tcgcgcacaa tggcaagcga tttccgccac cattgaggca aacgatccgg actgtcgtgg
     1861 tattttaatt ttaggtttag atgccccgtt agaggtgttt aaagacacct ttgaacaggc
     1921 aaaaggctgt gagaaagtga aaggctttgc agtcggccgc accattttcg gtgaaccgtc
     1981 cgaaaaatgg cttgccggtg aattggacga caataccttg atttctgcgg tatcggagaa
     2041 atatcgcact ttaatcgatc tctggcaaca acgttaatca tattgcttta agtgaaaacc
     2101 ccttagctta tgatattaag caaggggttt tgttttgcaa aaaatccggc taaacagacc
     2161 gcttgctagc cgtaaaaatg cccgaatttt cctaaaaaag cgaatatcgg gcattcctca
     2221 atctgcttat cacaaaataa gtgtgatgaa gttcacattt catacataaa cccccccctt
     2281 tttatcgaaa caaattgttt tatttttatc aaaatggaaa atgtatttca gtttagttct
     2341 atttagattc aataggagtc tgtgtatgag ttgcaacact tcaccaaaac gtttccacgc
     2401 cagttgggag tcgatcaaac agcaccaagt accagagtgg tatgaagatg ctaagtttgg
     2461 gatttttatt cactggggga tttactccgt acccgccttt gccccaccga cctgtcagtt
     2521 aggtgaaatt gatattgatg aacagtggtt ctgtaataac ccttatgcag aatggtattt
     2581 taattccatc aatgtcaaaa aaggcccgac ctacgaacat catatcaaaa cttatggcga
     2641 atcctttgcc tataacgact tcctgccact atggaaagcg gaaaaatggc aaccagcaga
     2701 atgggcgaaa ctgtttgcca aagctggcgc caaatatgtg gtattaacca ccaaacatca
     2761 cgatggtttc tgtctctatc caagtaaata taccgatttc aactgtatgc aagccggacc
     2821 gaagcgggat ttaatgggcg agctgactga aaatgtgcgg gagcaaggct taaaaatggg
     2881 cgcttactac tcgggcatta tcgattggac ttattcctct gccccgattt tcaccgaaag
     2941 tcaaaacttc tcaaacgctt gcccgactta cgaatacgct gactacgcct ataaacaagt
     3001 ggtagagctg atcgaccgct ataaaccaga tgtattgtgg aatgatattg gctggccaaa
     3061 agtgggcgag catatgttac cacacctatt tgctcattat tacaacagcg ttcaagaggg
     3121 cgtagtggac gaccgctgga acaaactatg gtgcgatttc acctccaaag aatacaaaca
     3181 cggcgtggct tcccgtgata agaaatggga aatgtgccgt ggtatgggct tatcgttcgg
     3241 ctataaccag gtagaagacg aaagccattt gatttcggtg aaagacttga tttccctatt
     3301 ggtagaaacc gtagccgaca acggcaattt attgctgaat atcggcccga aagcagatgg
     3361 cactattccg caagagcaag ttgaacgctt attagcactg gggagctggc tggaaataaa
     3421 tggagaggga atctataaat cccgttgtag ccaacaccaa accgagcaaa tcggtgatgt
     3481 aacctatcgt tataccaaag ttggggcgga tctctatctt tacattgatg gcttaaccga
     3541 agcccaaatc agcttgccac tgtcagttta tggtgagcta caagcactca ataccgagct
     3601 gaaatttacc attgaaaaca ccgcacaagg cagagtgtta catattcaaa actaccagcc
     3661 ggattggtat gtattaggct ttaaaattgc agatggggag aaataggtat gtccgtttca
     3721 caacgtttta ttgactttat gaatgcccac gttgctccag tagcacgtcg aatggaaaat
     3781 caaccgcata tttccgctat tcgagacggt tttattgtag tgttaccatt cttaattgtc
     3841 ggcagcttta ttatgatttt gctaattccg ccatttgatg aaaataccca aaatgctttc
     3901 gggcaagctt ggtggcgttt tgcgaattgg gcaagccctt acggttggaa tttcttccaa
     3961 atgtcgttta atgcgatttc attatttacc tctgccagta tcgcctacaa ccttgccaaa
     4021 gcctataaaa gagagcccct gccagcggca tttctctcgg taatggcatt tttgttagtg
     4081 gctgcaccgg tcaaagacgg aatgatggat attaaattct ttggcggtat tgggctattc
     4141 tctgcgattt ttattgccat ttattcggta gaaatgaccc gcttgttgga gttcttaaaa
     4201 attaaaatcc gcttaccgaa agaagtgccg cacgctgtag cagaatctct gaatatcgtg
     4261 attccaattt tagcgatttt actgactctc tatccgtttg ccatttgggt ggaaagtgcc
     4321 acaggtcgta atattccaca actaattatg gactttatgg cgccattgat tgctgtgagt
     4381 gactcgctag gggcaatttg cttgttcgtt attgctaccc atttgctctg gttcttaggc
     4441 attaacggct cattggtact aatgcaactt tggacaccat tcctactgca aaatatggcg
     4501 gcaaacttag cagcattcca agctggtgaa ccgctcccct ttatcatcac caattccttc
     4561 tgggatttct atatcgtaca cggggcaagt ggtggtgtaa tagccttggc attcctgctg
     4621 gtacgcagta aatcggcaca cttacgctct atcggtaaaa tcggcttggt tccgtccttc
     4681 ttctctatcg gtgaaccaat tgtgtatggt gtgccaatgg tggttaatcc gctgttcttt
     4741 atcccgctga ttttcgcacc actagcgaat gcggttattg cctacctgat tttagatttt
     4801 aaccttattc accgtgttta cttgatggca ccgtggacaa caccggcacc gattggggca
     4861 tatctggttt ctgccggtga tatttgggca ccaattttaa gtattgcact gattattttg
     4921 gatattgtga tctactatcc attcttcaaa atgtatgaaa aagtctgcgt cgagaaagaa
     4981 aaagcacaaa atctagatga aaaagcacaa caggagttgc tagaaaaagc acgaatggca
     5041 gcacaataac acttatttct agcgtaattg agaggggcta atcgaaagat tagcccttat
     5101 ttttgcaaaa aattgacaaa atttatccgc ttgtaaacaa gaaaagcgta taatgaaata
     5161 aaaaattcaa gcagagataa tttgaaatga atggacctac tcaattagca cattttcaag
     5221 aacaaatccg aaaagagtat gacggactaa gtaaacgttt aaaacaagtg gcacagtatg
     5281 tgctggataa tggcaacagc gtggtgtttg atacggtttc taccattgct gaacgagctg
     5341 atgttccccc ttcaacctta atccgttttg cgaatgcgtt tggatttagc ggttttaatg
     5401 aaattaaaca gctttatcgc caagatatga tggaaggcac atcacgttac accgaacgtg
     5461 tgcaactttt tcgtcaaatt gaaccgcttg atgagcaaaa cagtgagctc aatcatattt
     5521 tagatgtgtt cgtacagggt aatacgcagg cactgcaaca gttatcgaca caagtcagcg
     5581 aagagcagtt agcacaaacg gtagatattt tacacaatgc caaacgcatt tttattgtgg
     5641 gtttaaaacg ctcattcagc attgcgaact acctaaacta tgcgttgcac catttggact
     5701 atgatgtctt tatgatcgat ggttcgggcg gtatgtttga cgagcaatta agccgaatcc
     5761 gtgaaggtga tgcggtgatt gccgtgagct tttccccgta tgcgaatgaa acactcaacg
     5821 tggtgacagc aactgccaga ccgggggtaa aacatattgc gatcactgat agccaactta
     5881 gcccactcct ttcatttagc gatgtgtcgt ttattattaa agaagcacag gtgagtggtt
     5941 ttcgatccca gtgtgccaca atgacgctcg cacaaacgat tgccgtttca ctggcgttga
     6001 aaaaagccta gattaagaaa gtgaaagacc tgcgtaaata caggtctttg tctattaacc
     6061 gattaaagcg ttaatttcat cacgatactg cccggctttt gcaccaaaaa taatttgttg
     6121 cgtatcaccg actttaatga catcaaccgc cccaagcttt ttcagtgccg acttatttaa
     6181 taaaccgttg ttatgtaaca ccacacgtaa acgggttaaa caagcttcaa cttgcttgat
     6241 attctctttg tttcctaaag cattaataat ttctagaatg atagatttat
//
LOCUS       DANLXB010000147         6217 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLXB010000147 DANLXB010000000
VERSION     DANLXB010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6217
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..236)
                     /locus_tag="PXD41_001997"
     CDS             complement(<1..236)
                     /locus_tag="PXD41_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL6289500.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRR"
     gene            complement(426..1613)
                     /locus_tag="PXD41_001998"
     CDS             complement(426..1613)
                     /locus_tag="PXD41_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6289501.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(1888..2625)
                     /gene="pxpA"
                     /locus_tag="PXD41_001999"
     CDS             complement(1888..2625)
                     /gene="pxpA"
                     /locus_tag="PXD41_001999"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL6289502.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(2612..3541)
                     /locus_tag="PXD41_002000"
     CDS             complement(2612..3541)
                     /locus_tag="PXD41_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL6289503.1"
                     /translation="MIYIEIIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSASTALKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSRIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYAAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(3538..4185)
                     /gene="pxpB"
                     /locus_tag="PXD41_002001"
     CDS             complement(3538..4185)
                     /gene="pxpB"
                     /locus_tag="PXD41_002001"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL6289504.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(4279..5103)
                     /locus_tag="PXD41_002002"
     CDS             complement(4279..5103)
                     /locus_tag="PXD41_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL6289505.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(5237..6061)
                     /locus_tag="PXD41_002003"
     CDS             complement(5237..6061)
                     /locus_tag="PXD41_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289506.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         1673 a         1445 c         1410 g         1689 t
ORIGIN      
        1 cgacgatgat gagcaatcgc agcggcaatc acagggcgta aacgctctaa atcatctggg
       61 ggagattgag gcacagtttt agaggctgga atagaaacag gttcggggaa atattgattg
      121 ataatcttgg aaataaagct gatggcataa attaaaacca gcaggaacag cataacaaat
      181 cccattccgg ctaccattaa atttatacct tccgcaaaga gttctgcagg tgccataatt
      241 tatccttaaa atgtagaaat gatgaagaaa atgtagaaaa aattcagatt tatttcaaat
      301 tatttagcct caaaatgagt ggtagatcac aaactttaaa cgcaagcggt cagattttac
      361 aaatttttta caagagtagt taaaatttgc aaaacctgac cttaggttag cttgaagcta
      421 agtcgttatg ccattagccc cgaaatatat tttgaaaggg tcattgcact tagcaccgcc
      481 attagaatca ccacaatcgc ccctgaaacg gtcatccaca cagggtgttt gtagtcgccc
      541 acaatcttgg ttttgtgagc tgccagcaga attaacccga gggaaatcgg tagaattaag
      601 ccgttaagcg tccctacaaa caccaagact tgtgccggtc tgccgatggt tgccagcacg
      661 gcggttgaaa ccacaataaa ggcgacaatg aaacagtttt tgtgtttttc gataaatggc
      721 gagaatgaag taatgaagga aaccgaggta taagccgccc caatcacaga ggtaatggag
      781 gctgcccaaa tcaccacgcc gaagatcatc aaaccgacat cgccggcaac gtgggcaaat
      841 ggggtagccg cagggttttt cggatcaagt tgcacgccca ttgacaccac gcccagcacc
      901 gctaaaaaca gtaccacacg cataattgag gcgattaaaa tggctgacac cgagcttttg
      961 ctcacctctt ttaaattctc tttgccttta atgcctgcat caagcaaacg gtgcgcacca
     1021 gcaaaggtga tgtatccacc aacagttccg cccactagcg tgacaatcgc aatcacgtct
     1081 aatttttccg gcacaaaggt atgcaccacc gcatcgtcga ttggcagatt ggcttttacg
     1141 gcaacgaaga tggttaaagc aatcatcaca aagcccataa tttgtgcaaa tctgtccatc
     1201 actttaccag cttcatggaa caggaacacg cccacggcaa tcgcaccgct gaccaccgca
     1261 cccatttcag gggaaagtcc ggtgagaatg tttagcccta aacctgcacc gcccacgttg
     1321 ccgatattaa aggctaaacc gcccatcacg ataagcagag ccagaaagta acctgccccc
     1381 ggcaatacgg cattggcgat gtcttgagct ttcttttccg atactgctac aattcgccaa
     1441 atattcagtt gagcaccgat atcaagcaag atcgagagta agatcacaaa gccgaagctg
     1501 gcaagtaggg tttgggtgaa ggtggctgtt tgggttaaga accccggccc gatggcggag
     1561 gtcgccatta aaaatgctgc cccgagtagg gcgctacggt tgttgtttga cattgtgttg
     1621 gttccttttt tgttgttaat gagtcattat tcgtggattt atcatggtaa tattcccctc
     1681 tttagcaaag aggggttagg ggagatttgg cagtagaact catcgaagtg agagagttaa
     1741 taatgctcaa tttaacctct tgaaattact tattttctcc gtaaatcgct tctgtcaaat
     1801 ctcccccagc ccctcttttc taaagagggg agttcgatct ccaagagttt tatttctggt
     1861 tttccgtcca ttttgactaa aacaggatca ggctttcacc aaaatcccct ttgcctgtaa
     1921 ctctttttta attcgctcgg caaataccac ggcgtgttcg ccgtcaccgt gtaagcaaat
     1981 gctgtcggct ttaatcgcca cattaccacc atcaacggtt ggtacagtgc cgtctaacac
     2041 catttgcaag acttggctga tcgcttcatc atcgctttct accattgcat catcacgggt
     2101 gcgaggcacg agcgagccgt cagctaaata gtggcggtcg gcaaagactt cggaaatggt
     2161 ttccaaaccg tgctgctcgg caatgctcaa catcaggctg ccggataagc ccatcagttt
     2221 gaggttggga tcgaactgtt tgaccgtatt ggcgataagg gtggcaaggt gagggtcttt
     2281 ggcggccata ttgtataaag cgccgtgcgg tttaacgtag ctcatcggca tattttccgc
     2341 atcacataag gctttggcgg ctcccagttg gtagagcaga caggctttaa gttcatcatc
     2401 gggcagttgc atattggtac gcccaaagtt ttccctatct ggaaaactcg ggtgagcgcc
     2461 aactcgcacg ctgttttcct tcgcccagtt aatcgcttta cgcatttcat tgtaatcacc
     2521 ggcgtgcaag ccacagcaga cattcgccga agtaacgagc tgtaataatg aatgatcgtt
     2581 gccacaacct tcggcaagat cgacatttaa atcaacgtga ttcattcgct tttctccgaa
     2641 ttgtttccaa ataattttga tctttttgat aaatttcgac cgcttgttca cggcttactt
     2701 gctcaaattg caccgttgag ccgaacggat tttgtgccaa ccgcccgaga tcggcctgaa
     2761 taatgcaggc aattttcgga taaccaccgg tggtttgggc atctgccatc agcacaatcg
     2821 gctggccgtc cggcggcact tgcaccgtac cactcggggc tgcgtaggag agcatttcaa
     2881 gggaagcggt caattccaac gctttttctg caaaacggta gcccatacgg ttgctgttgt
     2941 tttgcagttg ccacccttgt tgccaaaagc gttcacggct atctgcggta aaggcttcat
     3001 attcgctcga agcggttgcc cgaatgcgtg aggtgaaatc aatcggctca atcgacatca
     3061 aagaaagtcg gctgtctctg cggcctgtgg cgatgttatc gccggctttt aacattctgc
     3121 cttgaaaacc gccaaattga gctttgagag cggtacttgc cgaacctaac acctgcggca
     3181 ccagaaaacc gcctgccacg cataaatagg cgtaattgcc gagaacaatc cgttttatcg
     3241 tcagcgtttg acgggcgttg gcagtgtagc ggtaatagga aaaaaccggc gtgccgtcca
     3301 gctccgcctc caccaatgca ccggtgaggc aaaatggcgt gtcgcaatca aaggtaatcc
     3361 gcattccgcc aagggtaagt tcaatcgcag gtgcattatt tgcatttttt aacaataaat
     3421 tacccgcttg taaggcaagg ctgtccatcg caccgccgtg gctcacgcct aaatggcgat
     3481 aaccataacg ccctaaatct tgaatgtggg caaaaccctg tattatttcg atataaatca
     3541 tagcgttata ctctccgcca caaatctaac attatcgccg gctgtaagta gcgttggcgg
     3601 attgtgttga atatcaaaca acggtaactc ggttcgtcct aacagttgcc agccacctgg
     3661 tgaggtaaag ggataaatgc ctgtttgcct gccgccgatg ccgaccgaac cggcagggac
     3721 tttggtgcga ggcacgtttc ggcgtggggt gtgtaaattt tgcggtaagc cgttgaggta
     3781 aggaaagccg ggttgaaagc cgatcataaa cacggtgtaa gtcggttcgg tatgacggcg
     3841 gataatctct tcgggagtgg tattgtggaa ttgggcgact tcaaacagat cttcgccaaa
     3901 ttcaccgccg taatggacag ggatttcaat caggcgtggg gattgtgcgg cttgggcttg
     3961 gtcgttttcc cagagttgtt gaaccgcttg gataaggcgt gtgctatcgg tgccaatggc
     4021 gtgaaatagg gtaaaattgt tcattcctac caccacttcc aacacgccat ctaaggctct
     4081 tgcctgttct gccacccgcc aaatctgttg ctgtttggca agctctgcag gcggttcggc
     4141 taagcagagc agggaatgtt cgctggtatg atgaatcgtc agcataattg ccctcaaatt
     4201 gttacaaaaa ggtaacaact ttttacgctg atatatccag actgtcaatt ttattttgtt
     4261 gaaaatgtga aatagctctt aattttcaga aatttgatca tttcttattc gccaaaacgt
     4321 tgcaaatctg ggcttgcctg attctgtgac acctcgatat ttataggtaa tgattgagcc
     4381 aatcggtggc ggattttctc gttctttatc tttaaaaccg ctgccaatcc gaaaacgtcc
     4441 acgttgattt tcacaagtga ttgccccgag tttatcggta tatttccctt tgcctttatg
     4501 atgggcaacc acagtgcatt cctcatctaa aaccggtttg attttcaaaa tttgggcaga
     4561 acgaccttga atatagcctg cattcgggtt gcgaacgata accccttcgc caccttgttc
     4621 cagcacagat tggtaaaatt gttgaaggtg ggctttatct ttaatcggaa tttgctcaat
     4681 aatagcgata tggagcgttg gatgttgctt cagataattc tctaaggtcg ccagccgttc
     4741 aatcaaattc ccttgtgcat ttggcacatc gaacacctgt aatttcagct tgtgccaacc
     4801 tttgggctga gcggaacgca caatgcttga aatttcctca aatttgcccc gttcgctaaa
     4861 cagttcgccg tcaatcgcaa aaggagggaa atcttgaata aaatagtcgg gtggattgag
     4921 cggataacct tggcggctga tgagctgttg accgtcccaa aagcctcgca cgccatcgag
     4981 tttttctgac attacccagc cactgatgtc ttgatcttga tattgctcaa cgagcattaa
     5041 ctcgggcgat ttggcaaaaa tagggttacc aatgaagagt aggaataaga gcagtttttt
     5101 catagtctct ccgaaatagt gcctccgaat atgcaaggca ctataaagga aagcgtgcaa
     5161 acagtcagaa atgaatctca atttttcgac gcagatcgca aaattttccg aaaaactgat
     5221 cgcttgagtg agaaatttaa cgtactgttt gaattaaagc agaaatatcc tcgctaaagg
     5281 tttccaactt cgccatttct tcaatttggc tatgagaata tttcttcaca ttgtaaacga
     5341 ccaccatact tacatcacct acttgcaata aattactttc gccaaaaggc gtgtagcgtg
     5401 ttgccccaat gctgataatc gctttagttg ggtagtttgc ctgttttaac atttcggaaa
     5461 tgttgttcat cggaccttca tcgggctgat tattcattct ctctacaatc caatcgagca
     5521 atttttgatg gaaatagctg tactccaccg cagggctgtc gatgccgtag gtattcagct
     5581 cgccattacg tttatggaaa caagcgatgt tgtaattatc cagcgtgccg cctttgttga
     5641 agttatctaa cggaagatga attgccgaaa gccctttaga cgaagccccc cagtttttct
     5701 tttcacagat tttattcgca ttcggacggc ggatagagca gtcattgtaa gccgcaaaat
     5761 gggttggcgt gagcgaaacc acttgctgat cttggtagcc aatttcacaa attaacgcca
     5821 cttcaggctc aatttgcaga ttatcagcat cactcgggaa attaatcgca gtatttgaaa
     5881 gcggataggt ggataaaaac tgataatccc ccaaattttc cgccggcaca taaaacggga
     5941 aaatcgcctt tggctgcact gcttccactg ttttcacttt cgcaaaatcc gcctcctctc
     6001 cggcttgttc taaatgtcca gcaaaattgc cggccacgcc taaaccgata aagtgttcca
     6061 taatctactc cttaattggt aaaagttgga taaaatttta ccgcttgtaa ccaaaaattg
     6121 cgaatgttta ttttgatctg attgatagaa aattattgaa ttgagattaa atttagccat
     6181 attttgaaca taaaattagc gctttgttat aaaaaca
//
LOCUS       DANLXB010000148         6117 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLXB010000148 DANLXB010000000
VERSION     DANLXB010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6117
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..633)
                     /locus_tag="PXD41_002004"
     CDS             complement(<1..633)
                     /locus_tag="PXD41_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL6289507.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXD41_002005"
     CDS             complement(760..1353)
                     /locus_tag="PXD41_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6289508.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..2410)
                     /locus_tag="PXD41_002006"
     CDS             complement(1364..2410)
                     /locus_tag="PXD41_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL6289509.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSEKNPTDNNTNYKNNNDHTTPLNPPAGEPAP
                     AEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNITARIRESSVADCCQVVDYLVAK
                     WGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNGKPVCVNGKWVTPAELEKRLIMP
                     TVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATINTRNKRPLERDLPMIISQEIKN
                     AVERIDRLRVPTFS"
     gene            complement(2407..3090)
                     /locus_tag="PXD41_002007"
     CDS             complement(2407..3090)
                     /locus_tag="PXD41_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL6289510.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(3148..3336)
                     /locus_tag="PXD41_002008"
     CDS             complement(3148..3336)
                     /locus_tag="PXD41_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL6289511.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            3461..4117
                     /locus_tag="PXD41_002009"
     CDS             3461..4117
                     /locus_tag="PXD41_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289512.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            4129..4503
                     /locus_tag="PXD41_002010"
     CDS             4129..4503
                     /locus_tag="PXD41_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289513.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            4655..5392
                     /locus_tag="PXD41_002011"
     CDS             4655..5392
                     /locus_tag="PXD41_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6289514.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(5428..6024)
                     /locus_tag="PXD41_002012"
     CDS             complement(5428..6024)
                     /locus_tag="PXD41_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289515.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
BASE COUNT         1802 a         1248 c         1124 g         1943 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg ggggattaag gggggtagta tgatcattat
     1981 tatttttata attagtatta ttatctgtcg gatttttttc cgagctttct cggaaatttt
     2041 tccgagtttg ttcggagtta tttccgatac tcggattttt ttccgactca cggatcggct
     2101 cgaatttatt ccattcacaa cctttttcgg ttaaacggac ataatcttta ccgtccattt
     2161 tgaagtggtc gataatgcct ttttctttca acaccttata ttggcggtaa actgtatctt
     2221 ctttgctaaa aaccgcaggt aactcttcgc aaaccttgct aaatgacatc cagtaatagg
     2281 ttatgccgtc aataaccacc gctttcgccc aactggaggc ttgattgatt aaatcgacca
     2341 atgccccttg tgtaatattg atttcccatt ccactaagcg gacattgttt atggttgatg
     2401 taaatctcat tgtcctaact ccgatgcgta acgttgagca atccattcaa tccctttggc
     2461 ggttactctc gtttgggtaa aattatgacc gtgttctgcc gtgccggttt ttactgcaaa
     2521 aagctgttta gcttgtttat cttgataagg gagtaggttt cctgattggc gataaagaac
     2581 tcgatatcgt tctaaacatt caatcaaccg cttttctgga aaattgagta tcttggcggt
     2641 ttctcgcaat gatttagtcg ttcccacctc aacataatgc tccacaaatg cgactttcgg
     2701 ggcttgaatg gctaattgat gattctgctg ctcaatcact tcttgctgtt ctgccgccaa
     2761 ccgtagagct tgagagaaag attgtggaat accttgtctg ctttctagct cttgccaacg
     2821 gtcgataatt ttcttgcgaa gtatcacgct atagccggaa attagggtaa gggttaaatc
     2881 gtaaggcaat cgaaattccc ggtatgtttg cccattttga gggtgtgtcc aaaaatgggc
     2941 atacccctcg gcaggaatat ctaattgact aaacatcgct tctatatcac gagtaacgtg
     3001 tcgatgttct ttttcgcaca actcagcaat ctcacgacta ctcatcgtaa tgcttgcttt
     3061 tggtgccgaa atgtttaata attgattcat cgaaaatacc tttcgtgttt aattatgtat
     3121 gaaagccacc gttacagcgg tggtttttta tttgcttcta tttctataaa gtgagtgttt
     3181 gacctttaac ttgccggcag tgatctcttg taatctgtac gcatttttct caggaataat
     3241 ctcgccccat tgagaaacag cagatacact aatccctaaa gttgccgcca ctttttctag
     3301 agttccgaaa tgttcgagca catcatcttt tttcatattt tcttaattcc tttcttgaat
     3361 tttatttaag acctcttaaa tatacaatta aaggaaactt aagtcaataa atgttaagat
     3421 aacttaacag caactttatt tttaccttta aggggatact atgaatactc agaccttggg
     3481 cgatagaatt aaaagccgta gaaaagaatt aaaattgaca cagaaagatc ttgctactgc
     3541 gttaaaaggg gtctcacacg ttgcagtatc tcaatgggaa agtagtacga ctaagccaaa
     3601 ttcagagaat attttggatt tatctacagt attgcaatgc gatattagtt ggctcttgcg
     3661 tggtaatgga gagtctaatg ttctacctgc tagcctcggt atgactaaag tcccattaat
     3721 tagctatatt caagccggac aatggacggg aattgacgat tttcgtgaaa cctgtgggga
     3781 ttatgaatat atcctaactg atcttgaggt gtctgaagat gcttttgccc tagaaatcaa
     3841 aggggactcg atggagcctg attttattga aggagaccga gtaattattg atcctgatgt
     3901 acaacctcac gccggtgagt ttgtggcagc aattaatggc gattatgaag ccactttcaa
     3961 aaaataccgt ccgttagaag acttagacga atacggaaga caacattttg agcttatcgc
     4021 tcttaatccg gattaccata aattatcaac gctaaagcaa gaaatcagaa ttatcggcac
     4081 aatggtagag catcgtattt atcgtagaaa gagataggaa ttgataatat gacagaattt
     4141 aaagatgtaa aacaggcgat tgtagaagct caattagctt cgacacctaa agataaagtc
     4201 gttaatgaca taatgaaagg aagtgcggaa ctgctttcag caaatgatat tatcaatagg
     4261 ttaggtattg gggcagatga gtttcaagag ttggttaatt tacctaacca ttatttgcgt
     4321 ataaatggag ggttaggtgc tgctgtgtat aatacaagaa gaatgtttga tacccatgtt
     4381 gagttagtca atcaagagtt agaaaagaat atttcatttc ctaaacctga tttatatatt
     4441 ttggggaaag ctcgttggaa aaaagaaaca tttaagaaat ggttggaaga acagtgtaga
     4501 taaagaaaag gtaggttaaa aaacctacct tttctgaacc gcaaataagc gattctcaca
     4561 ctttacaaag caatccagct cctacgtctg gggcttcggg tccgttgcca gtgcaagtat
     4621 tattacatta aactaaactt gagtaaagga aaatatgttg tccaaacaag tgctaagtat
     4681 ttcagaaagt cggctgagta catatttatt ttgctttttc cgaaatgatc ccacaaaaca
     4741 gaaagaagct attgcaattt ataccgcctt gcaacatcga acaggaattt atttttcatt
     4801 gattcaagaa atagaggtgg cactaagaaa tgaagtcagc cagttgttac gctttgctgc
     4861 acctaatcat aatttatacg aattctttca ttttctagcg aacgatagta atgctcctct
     4921 taatgcagaa tctaaacgcc agctacaaaa agccattagt gaatgcggac gtaactataa
     4981 tgaaaatgac ataatttctc atatttcttt tggattttgg gtaaatctgt ttaattatga
     5041 tataaagcgt aatcaatatg ttgcttactg gcaaagcgta ttaaagccta tttttggaca
     5101 tagatttagt aattttaagg atttatacaa tacattaaag caaattatgc gttttagaaa
     5161 tcggctgtat catcaagaag tggtttggaa taagcgaatt gccaagaaac caacgcacgc
     5221 actagagaat ttagaaaaaa cttacaagca atttgagtta gcactacaaa agatagcacc
     5281 tgaacgattt gcgtttcgtc agctttcaca agcacttatt tggcaacgcc aaatcttttt
     5341 cgaccaacaa atttttgaag ctgaaatcgt tattttgccc caacatatct aagcaaaaag
     5401 ctacgcatct atgtagcttt ttcttaatta aaaatgtttc cactctaacc cttgtgtatc
     5461 aaaggtaaat tgccctttgc cataattgta aaaactcgcc tctacaatta gttttttcga
     5521 ctttttcaac ttatctacaa aggttttcat tgcttttgca ttttcaatga aaagcgtatc
     5581 attgctgcca ccatccgccc caatcattcg ataactttcc aatttaccat catcaaactt
     5641 cacagtaatt ttacagctct caatcataca gccattaaat tgaccgtgta cgctaaaaat
     5701 tacatcattg ccatatttag ggtctttgcg taacattaaa ttcattgatg atgaattata
     5761 cgggaaacca aaatctattg tgttagttga tctaatttta gcaaagtaag tcgttgcatt
     5821 acgcaattca tctttctttt gttcatattc ccaattagac ttttcatcgg tagcttcatc
     5881 tttaccagta tcttttttca caaagacact atcataacat tctaagcgtt ttgcactatc
     5941 ttcaatctta gagcaacttt ctccagtttc gttagctaaa gcaaaagcgg gcaaacaaca
     6001 taaagtcatc agtagttttt tcatataacc tccatagaaa tcccttctta ttttctcaaa
     6061 agcgtggttt tcggtctgtg atcaagctcg caatctcaat aattatattt taatggt
//
LOCUS       DANLXB010000149         6065 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLXB010000149 DANLXB010000000
VERSION     DANLXB010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6065
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(199..1485)
                     /gene="purD"
                     /locus_tag="PXD41_002013"
     CDS             complement(199..1485)
                     /gene="purD"
                     /locus_tag="PXD41_002013"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL6289516.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1719..2093
                     /gene="rpsF"
                     /locus_tag="PXD41_002014"
     CDS             1719..2093
                     /gene="rpsF"
                     /locus_tag="PXD41_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL6289517.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2068..2442
                     /gene="priB"
                     /locus_tag="PXD41_002015"
     CDS             2068..2442
                     /gene="priB"
                     /locus_tag="PXD41_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL6289518.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2417..2644
                     /gene="rpsR"
                     /locus_tag="PXD41_002016"
     CDS             2417..2644
                     /gene="rpsR"
                     /locus_tag="PXD41_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL6289519.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2660..3109
                     /gene="rplI"
                     /locus_tag="PXD41_002017"
     CDS             2660..3109
                     /gene="rplI"
                     /locus_tag="PXD41_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL6289520.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3173..3949)
                     /gene="dnaQ"
                     /locus_tag="PXD41_002018"
     CDS             complement(3173..3949)
                     /gene="dnaQ"
                     /locus_tag="PXD41_002018"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL6289521.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4037..5707)
                     /gene="ettA"
                     /locus_tag="PXD41_002019"
     CDS             complement(4037..5707)
                     /gene="ettA"
                     /locus_tag="PXD41_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL6289522.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1599 a         1393 c         1286 g         1787 t
ORIGIN      
        1 atttaaagat ctttttagtc tttgccaata ttgacagttt tttccacata tagggcacgc
       61 agagtcattt agaaaagagt ttactgcatc gtttaatgat agtgatttaa tttcggggcc
      121 tgcatcgagt tcagtgatat taatttcatt aagtgttgta ctcataataa atttttcctt
      181 gttttaagag tttataaatt atttcgcttg ttttcttgcc actgctcggt agccaatatc
      241 tcggcgatag aatttgcctt gccattgaat ttgttcggca agttgtaagg cttgttgttg
      301 agcttcaaat acactgttgc caagtgcggt ggcacaaagt acacgtccac cgttggtgag
      361 cagttttcct tctttttgct caacccctgc taagaaaact ttttgattgg aggtagaggt
      421 cggaatgcct atgatttcat cgcctttacg gtaatcgccc gggtagcctg cggcagctaa
      481 aacaatgcct aatgcggctt gttcacacca ttttgattgc acgctatcca atttgccttc
      541 gcacgctttt aagcacaatt caacgaggtc tgattccaaa cgcatcataa tcggctgagt
      601 ttcagggtct ccaaaacggc agttaaattc aatcactttc ggctgaccgt ttggcataat
      661 cattaagccg gcatagagaa aaccggtgta aggggtattt tcgcttgcca ttccttgcac
      721 ggtcgggtaa ataatttcgt ccattacacg ttggtggatt gcctttgtta ccaccggagc
      781 aggggagtaa gcccccattc cgccggtatt taagccgcta tcgccctcgc caacacgttt
      841 gtggtcttgt gaggttgcca ttggttcgac atttttgccg tccaccatca caataaaact
      901 ggcctcttct ccgtctaaaa attcctcgat caccacacgg ctgccggctt caccaaaggc
      961 gttgcctgac agcatatcac gcactgcatc ttccgcctct tgtaaagtca ttgcaacaat
     1021 tacgcctttg cctgcggcta aaccgtctgc tttgattaca atcggtgcac ctttttgttt
     1081 taagtaggca agtgccggtt caatttcggt gaaattttgg tattctgcgg ttggaatctg
     1141 atggcgagcc aagaaatctt tggtaaatgc tttagaacct tctaattgag cagcggcttg
     1201 ggtcgggccg aaaatggtta aaccgtgggc tcgaaaagca tcaaccacgc caactactaa
     1261 cggtgcttca gggccgacaa tcgtcaaacc tacgctattt tgtttagcga atgtaactaa
     1321 ggcaggcacg tcagtggcgg aaatagctac attttcaatg ccgttttcca tcgctgtgcc
     1381 ggcattgccg ggggcgacaa agactttgtc tgcgagcggc gattgacgaa ctttccaagc
     1441 aagagcgtgt tcacgcccac cgttgccgat aattaaaata ttcattggga ttccttgcaa
     1501 aaatgataaa gcaaacgttt gcgtattgta cttgatttgt ttatctgctg acaagcagtc
     1561 gtttttctcg gattttttgc aaaatacgaa attgttgctt gcaaaatagg cttttttcag
     1621 tataatcctg ccgttcagtc acattcgttt tttaatcctt gcttccacaa gttggtgact
     1681 ggctaaagtt ggaggctgct aacccgtaag gatagtcaat gcgtcactac gaaatcgttt
     1741 ttatggttca cccggaccaa agcgaacaag taccagcaat gattgagcgc tacacagcgt
     1801 ctgtaaaaga agctggcggt caagttcatc gcttagaaga ttggggtcgt cgtcaattag
     1861 catacccaat caacaaactt cacaaagcac actatgtgtt aatgaatgta gaagcacctc
     1921 aaagtgtaat cgacgagtta gaaactaact tccgttataa cgatgcagtt cttcgtaact
     1981 taatcgttca cactaaagcg gcagtaactg aagcgtcacc aatggtgaaa gcgaaagaaa
     2041 gcaaagttgc tgaagcggta gctgaagttg aatcagagga agcaggcgag taatttgccg
     2101 attgataatt gtttaatctt aagcggaacg gtttccagct tggttaaaca aagcctaaac
     2161 ccccttggtg tgcctcatta cagtttttgg ttagaacatc gttcaatcca aaccgaagtg
     2221 aatttagaac gccaagcgtg gtgcaaaatc caagtggttt tggcaggcaa tcaatttagt
     2281 tatttaaccc aacaaattaa gctcggtgag agcgtgagaa ttaaaggttt tatccatact
     2341 cacaaagact ttaacggttt aaatcagtta gtcttacaca ccgaacaaat tgaatttata
     2401 gatcaggaga agccaaatgg cacgttattt ccgtcgtcgt aagttctgcc gtttcacagc
     2461 ggaaaatgtt gttgaaatcg attacaaaga tatcgctaca ttaaagaact acatttctga
     2521 aagcggcaag attgttccta gccgtattac tggtactcgt gcgaagtatc aacgtcaatt
     2581 agctcgtgca attaaacgcg ctcgctacct tgcgttactt ccatatactg ataaccacca
     2641 ataatcagga gagagtacaa tgcaagttat tttattagac aaagttgctc acttaggttc
     2701 tgtgggcgac caagtaaccg ttaaatctgg ttttgctcgt aacttcttaa tcccacaagg
     2761 taaagcggtt atggcaactg cggcaaacat tgctcacttt gaagcacgtc gtgcagaatt
     2821 agaagcaaaa gctgcagcag cattagcaac tgcacaagaa cgtgcagcga aaattgcagc
     2881 attagcagca gtatcagtat ctgcaactgc aggtgatgat ggtcgtttat tcggttctgt
     2941 atcagctaaa gacatcgctg aagcattaac tgcagcaggt gttggagttg ctaaatctga
     3001 agttcgttta ggtgaaggtc cacttcgtac aaccggcgaa caccaagtta aaattcactt
     3061 acaccctgaa gtgaatgcaa ctgtagcagt aaacgttgtt gctgaataat cagtagaaat
     3121 agaaaaccca gcgaaagctg ggttttttgt ttgctttatt tattggttag aatcagtgag
     3181 atatttctgc tgtgtcggtt aatgcttttg tccataggca atttcctttg gattttttct
     3241 caatcagttt cagaagtgct aaatgcgact cttcctcttc atcgtttgct ttaagaataa
     3301 ttgcctcatc ggcatttaac acaattgcag aaaattcttc ttcaatatca ataacttcac
     3361 ttaccacttc agtttcttct tcgcctaata atgaaatctg accgccggtc atcattagga
     3421 atacatcagc taagatctcc gcatccagta acgccccgtg tagtacacgc ttgctattat
     3481 caatgccgag cctgtcgcaa agtgcatcta aattattccg tttgccgggg tacattcttc
     3541 gtgccatttg caggctatcg gttacggtac acatttctgc ggtttttgcc ggtggattag
     3601 gcagataaga aaattcttga tccataaacg ccacatcgaa gggggcattg tgaataatta
     3661 attccgcacc tttgatgaaa tccaaaaact cctcggcaat ttcagcaaaa acaggtttat
     3721 cttgcaaaaa ttcattggtg atgccgtgaa ctgcaatcgc ctcttcatct acctcacgcg
     3781 gtggcttgat ataaacgtga taagttctgc cggttaaacg gcggttaatg acttcaaccg
     3841 caccgatctc aataatatta tgcccaatct gtggcgggcc acctgccata ttcattcctg
     3901 tggtttcagt atccagcact acttggcgga taattttttc ttctgtcata ttcaatttaa
     3961 aattgtaggg gtgaaatatt tttatccctt aattctgcat ttgattaggg gcgaaacata
     4021 tttcgcccct acattgttac ttcgcaatcc gtttatattt cactcggtgc ggttgggtgg
     4081 cggcttcacc gaaggttttc ttcttccact cttcatagtc ggagaagtta ccctcgtaga
     4141 acgtcacttt gccttcatcg ccgtagtcta aaatatgggt ggcgatacgg tctaagaacc
     4201 agcggtcgtg cgaaattacc attgcacagc ccgggaactc taagatcgca ttttccaacg
     4261 cacgcagggt ttctacgtct aagtcgttgg tcggctcgtc cagtaacaac acgttaccgc
     4321 cacgttgtag tagcttcgcc aagtgtaaac gaccacgttc accgcctgaa agctcgccca
     4381 cacgtttttg ctgatctacg cctttgaagt tgaaacgccc cacataagca cggcttggga
     4441 tttcaaagtt accaatcgtg agaatatcct gcccgttcga cacctcttcc cacacggttt
     4501 tcttatcgtc catcgcatca cggaactgat cgaccgatgc cattaccacc gtttcaccaa
     4561 gcacgattga accagaatcc ggctgttctt taccagaaag catacggaac aaggttgatt
     4621 tacccgcacc atttgccccg ataatcccga caatcgcccc cttcggaata gcgaacgaca
     4681 agtcgtcaat caaagtgcga tcgccgtaag atttagtcag gttttgtacc tcgatcactt
     4741 tatcacctaa gcgtggaccc ggtggaataa agagttcgtt agtctcgtta cgtttttgat
     4801 attcgcctga gttaagctct tcaaagcgtg ccatacgagc cttacttttc gcttggcgac
     4861 cttttggatt ttggcgtacc cattccaact ctttctcaat cgatttttga cgagccgatt
     4921 ccgccgcttg ctcttgtgcc aagcgttttt ctttctgctc caaccaagaa gagtagttac
     4981 cttcccaagg aatgccttca ccacggtcaa gctctaagat ccagcccgca acgttgtcta
     5041 agaagtaacg gtcgtgggta attgccacta cggtgccttc gtagtcgtgg aggaaacgct
     5101 ccaaccacgc caccgattcc gcatctaagt ggttggtcgg ctcatctaac aataacatat
     5161 ccggtttttc cagcaacaga cggcaaagtg ccacacggcg gcgttcaccc cctgataaat
     5221 gctcgatttt tgcgtcccaa tccggcagac gtaacgcatc ggcagcacgc tctaactggt
     5281 tttgaaggtt atggccatcg tgggcttgaa taatcgcctc taattccgcc tgttttgccg
     5341 ctaatttgtc gaaatcggca ttctcatcag catacatcgc atagacttca tcaagctggg
     5401 ttaaggcgtt tttcacttcc gcaaccgctt cttccaccgc ttcacgcacg gtttgctgtg
     5461 gggcaagttt cggttcttgt ggaagatagc cgattttaat tcccggttgt ggacgagcct
     5521 cgccctcgaa ctctttatct acgcccgcca taatgcgtaa aagcgttgat ttacccgccc
     5581 cgtttaagcc gagcaccccg attttcgccc ccgggaaaaa gctcagggaa atatctttaa
     5641 gaatgtgacg cttcggcggc acgactttgc cgacacggtg catcgtatat acaaattgag
     5701 ttgacattgg ttgtattcct cacaaaaaaa ttcgccttat tttacttgaa tttacagcca
     5761 aaatataggg tggttttggc ttttggtaaa gtaacctttt ccaatagaga tgttatttga
     5821 ggctgcatag tactatgcat ttctcttacc ttgacaggta agagaaacaa atcctgaagg
     5881 aaaaaaattt taaggaagtt attctatgca atatgtatgt ccaaaaacac tcaaattatt
     5941 caacagcatt gttggttgtt ataagggaga agattaattc tctacctcat caaggcttga
     6001 ttttagattt aatatccatt tctaaagatg atttagatga tattttggag ggtaatactg
     6061 atatg
//
LOCUS       DANLXB010000150         5994 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLXB010000150 DANLXB010000000
VERSION     DANLXB010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5994
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            46..3117
                     /gene="fdnG"
                     /locus_tag="PXD41_002020"
     CDS             46..3117
                     /gene="fdnG"
                     /locus_tag="PXD41_002020"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:631..633,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL6289523.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3120..4034
                     /gene="fdxH"
                     /locus_tag="PXD41_002021"
     CDS             3120..4034
                     /gene="fdxH"
                     /locus_tag="PXD41_002021"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL6289524.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4027..4704
                     /locus_tag="PXD41_002022"
     CDS             4027..4704
                     /locus_tag="PXD41_002022"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL6289525.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4760..5677
                     /gene="fdhE"
                     /locus_tag="PXD41_002023"
     CDS             4760..5677
                     /gene="fdhE"
                     /locus_tag="PXD41_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL6289526.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5747..>5994)
                     /locus_tag="PXD41_002024"
     CDS             complement(5747..>5994)
                     /locus_tag="PXD41_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289527.1"
                     /translation="KLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQ
                     RPLDDSVIQYFKSQCRYAFMSDREIIANRCEVKKIAD"
BASE COUNT         1750 a         1301 c         1367 g         1576 t
ORIGIN      
        1 atcaaatttt gttttatttc tcacattatg tgatttggag tgattatgca gatctcaaga
       61 cgtaagttct tcaaggtctg tgcaggtggt atggcgggaa cttctgctgc aatgttgggt
      121 tttgctccag caacagcatt agctgcaccg cgtgagtata agctcttaag agcaaaagaa
      181 actcgacaaa cctgtactta ctgcgcggta ggctgtggca tgattatgta cagcttaggc
      241 ggcgaagcaa tgaacagcaa aggaaagtta attcatattg agggtgattc tgaccatcca
      301 gtaagccgtg gggcgttatg tccgaaaggt gcaggggcgt tggactatgt taatagtgac
      361 cgccgtgtgc attatccgga agtgcgtgaa gccggttcaa gtgagtggaa acgcatttct
      421 tggcacgagg caattgaacg tattgcccgc catatgaaaa atgaccgtga tgagaacttc
      481 gtcacccaca atgaagcagg gctggaagta aaccgttgga tgacggcagg tttcttggca
      541 ggctcggcgt gtagtaacga aaccggtatc gtcacccaga agtttatccg ctctctcggt
      601 atgattttta ccgacaacca agcgagtatc tgacacggac caacggtagc aagtcttgct
      661 ccatcatttg gtcgcggtgc gatgaccaac cactgggttg atattaaaaa ctccgattta
      721 gtgatcgtta tgggcggtaa cgcagccgaa gctcaccctg tgggtttccg ttgggcagtt
      781 gaagcgaaaa aacagaacgg tgcgaagtta atggtggtag atccacgctt taaccgtagt
      841 gctgcggtgg cggatattta tataccattg cgtccgggta cggacattgc gttcttgtta
      901 ggtgcggtaa actacctgct taaaaacgac aaaattcaac acgagtatgt gaagcattac
      961 accaatgcca cattcttact caacgaaggg tttaaattcg aagacgggct tttcaccggc
     1021 tacgatgaag ccactcgtac ctataaagac aaatccactt gggcttatca gttagatgaa
     1081 cagggtcagc cgaaacggga tatgacaatg caagatccac gttgtgtgat caatatgctc
     1141 aaagaccacg tttcccgcta tacgcctgaa atggtagaac gcattaccgg tacgccacaa
     1201 aaagatttcc tgattttctg tgaagagatt gcgaaaacct cagcgccgga taaagccgcc
     1261 accttcctct atgccttagg ttggacacaa cacaccgtgg gcgcacaaaa cattcgctca
     1321 atggcgatca ttcagttgct gtgcggtaac attggtgtct ccggcggtgg ggtaaacgca
     1381 ctgcgtggtc actctaatgt acaagggatt accgacctag gcttgttccc acatatgttg
     1441 ccgggctata tccgcctgcc aaccgaagcg gacgcaacct tagaaagcta cttaaatgcg
     1501 attgcaccga aaaccttagt ggcagggcaa gtaaactacg ggcaaaacaa cccgaaattc
     1561 gctgtgagta tgctcaaaac cttctacggc gataaggcaa ccaaagagaa cgagttcggc
     1621 tatcactatt taccgaaata cccgaaaggc ggtacagatc acttccgctt tatcgaacag
     1681 atgtatcaag gcaaagtgaa cggctatttc tgccaaggta tgaacccgat tgcctcttac
     1741 cctaactcgc agaagttaat taaagcgttg agcaatttga aatatttagt catttttgac
     1801 ccgcttatta ccgatacttc cgagttctgg aaaaatcacg gtgagttcaa caatgtgaac
     1861 ccgtctgaaa ttcaaaccga agtgttccgc ttgccgacca cttgctttgc ggaagaagat
     1921 ggttcaattg cgaactccgg tcgctggtta caatggcact ggaaagcagc agacgcacca
     1981 cacgaggcaa aaccggacgt ggatattctg tctgaaatcc gtgccgaact gatccacctt
     2041 tatcataaag aaggcggaaa agcaccgctt gaaccgttag aagcgatgac gtggaactat
     2101 atgaacccgt tagaaccgaa gccggaagag atcgccaaag agaacaacgg ttatgcattg
     2161 gaagatctga aagatgcaga cggcaacatc atcgtgaaaa aaggcgaact attatccagc
     2221 tttacacaaa tgcgtgatga cggtacaacc tccggtggtt gttggatcta ctgcggtcaa
     2281 tggactccga aaggtaacca aatggcgaac cgtgataact ccgacccatc aggcttaggt
     2341 aacaccttag gctgggcatt ctcgtggccg gtaaaccgcc gtattctata caaccgtgca
     2401 tcggcagatt taagcggtaa accgtggaac ccgaaacgcc agctagttaa atggaacggt
     2461 aaaaactgga actatgtgga cgttgccgat tacggtacag caccaccaaa tagccctgtg
     2521 acaccattta ttatgcaacc ggaaggggta tccggcttgt tcgtgcgtga acgtatgcaa
     2581 gacggtccat tccctgagca ttatgaaccg tttgaaacgc caatcggcac gaacccgtta
     2641 cacccgaatg taatcagcag tccggtggca cgcattctgc cgagcgataa agaggattta
     2701 ggcaccagcg atgagttccc atatgtcggt acaacttacc gcttaaccga acacttccac
     2761 tactggacga aaaatgccct gattaacgtc attgctcaac cggagcaatt cgtggaaatc
     2821 ggcgagaaac ttgccgaaga gaaaggcatt aaaaatggcg acaaagtacg tgtttggtct
     2881 aaacgtggcg aaattaaagc cgttgccgtg gtgactaaac gtatccgttc attggtctct
     2941 gacggcaaac caatccacac tatcggtgtg ccgatccact ggggctttgc ggctacaacc
     3001 ggtgcgaaaa aaggctattt tgccaataac ttaaccgtgc gaacaggtga accaaactca
     3061 aatacacctg aatcgaaatg tatgttatta aacattgaga aaattgtggg ggcttaacaa
     3121 tgagtacagt tcaaactcaa aacattatta aaatctccgc aacctcggcg ctgacaccgg
     3181 cgccgcaggc tcgttcgcac caagtggaag tagcgaaact gatcgatgtc accacttgta
     3241 tcggctgtaa agcctgtcaa gtgggctgtt cagaatggaa tgacattcgc tccgatgtaa
     3301 atgcaaactg tgtcggcgtg tacgacaacc ctgcggatct aaatgcgaaa gcgtggacag
     3361 taatgcgctt taacgaagta gaagaaaacg accgtttaga atggttgatc cgtaaagacg
     3421 gctgtatgca ctgtgccgag ccgggttgct tgaaatcttg cccgtcaccg ggtgcgatta
     3481 tccaatacgc caacggtatt gttgatttcc aatccgacaa atgtatcggt tgtggctact
     3541 gtatcgcagg ttgtccgttc aacattcctc gtatgaatcc ggacgataac cgtgtttaca
     3601 aatgcaccct gtgtgtggat cgtgtcaatg ttggtcaaga accggcttgc gtgaaaacct
     3661 gcccgaccgg tgcaatccgc ttcggtagca aagaagagat gaagttctat gcagaacaac
     3721 gcattgctga tctgaaatct cgtggctatg aaaatgccgg cttgtacgac cctgaaggcg
     3781 ttggcggtac gcacgtaatg tatgtattac atcatgccga caaaccggag ctttattcag
     3841 gcttaccgaa agatccgaag attgatacca cagtaacctt atggaaagac gttttaaaac
     3901 ctgtggcggc agtagcgttg ggtggtttag ctttagcaga agttgcacac tatattaccg
     3961 ttgggccaaa cgttgaggaa gatcttgaag aacaccacca tagcgaaaat gcagaaggag
     4021 gcaaacatga gtaagaaatt tgaaatcacg aacgatacca aaatcgttcg tcataagccc
     4081 ttagctcgtg ttagccactg gttcttagta atctcttttt ttatgacgat gtttaccggt
     4141 gttgccttct tcttccctga ctttgcttgg cttaccgaga ttttaggtac tccacagatt
     4201 gcccgtgcag tccacccatt taccgggatt ataatgttta ttgcatttat tattatggcg
     4261 ttaatatatt ggcaccataa tatccctgag aaaaatgata ttcgttgggc aaaaggcatt
     4321 gttgaagtac taaaaggtaa tgagcataag gtttccgata atggaaaata caatttgggt
     4381 caaaaattac tcttttggac tcttattctt gcgatgttca ctcttttagc cacagggatt
     4441 attatgtgga gacaattttt ctctcactac ttctcgattc ctatgctaag aattgcaatt
     4501 ttacttcatt cagcaagtgc atttatgcta tttaccggaa ttttagtaca tatgtatatg
     4561 gcattctggg taaaaggctc aatcagaggt atggttgagg gttgggttac cgttcgctgg
     4621 gcaaaaaaac accacccaag atggtaccgt gaagaagtgc tacctgaatt agaaagacaa
     4681 gtagctgagc aaaataataa ataacctcaa gtgcggtatt attaccgcac ttttatttta
     4741 ttggtttaaa aagaatatta tgagtatcaa aatactacct caagatgata tcaaacaagc
     4801 agctagttca tttcagcaac ccgagctctt atttgctaat cccaaaaatc tgtatttacg
     4861 ccgcgctaag cggctacgtg aattagccaa gcaaaaccca ttcggtgaat atatggagtt
     4921 ttctgctaac ctcgtggaca ttcaattagc attacttgaa agccagccaa ttgcagatta
     4981 ttctcaaaaa ataaccgctt gtgtagagcg cacgcaagga gaaacaccgc taaatgcaca
     5041 gaattttcag cgtactgatg aatggcggac actactctta gccattattg agaaattcaa
     5101 gccttatgca aatgatactg ttcttgcaac aattgaagta ttggaaaagg cagctaagtc
     5161 agagctagac acacttgctg ataatttgct aaatgaacga tacgaacttg tgggcgcaga
     5221 taaagctgtc tttatttggg ctgctctctc actttactgg gtacaattag ctcaacaatt
     5281 accacgtaat tctcgtgcag aaataggcca taaacattta tgtccggtat gtaactcagc
     5341 acctgtaagc agtgtgattc atttcggtga agctcaaggg ttacgttatc tacactgttc
     5401 tttatgtgaa agtgaatggc atgtagtacg tacaaagtgt acaaactgtg atgaaaccgg
     5461 caaactggat tattggagct tagatacagt agaagcagca gttaaagctg aaagttgtgg
     5521 cgactgccat tcctacttaa aagtactcta tcaagataaa gacgtgaatg tggaacctgt
     5581 tgctgatgat ttagcaactc tattcttaga ttccgagatg gaacaaaaag gtctttcaag
     5641 aagtgggata aatccatttt tatttcaagt agagtaactc atttacaaca aaaacggagc
     5701 ataacgctcc gttttttatt acatttaact catacactat acttttttaa tcagctattt
     5761 ttttaacttc acagcggtta gcaataatct cccgatctga cataaatgcg tatcggcatt
     5821 gagatttaaa atattgaatc acagaatcat caagaggtcg ttgtgctcca acacgtaatt
     5881 cctccataga aaaattacta acctcttcat ctttctcttt atttttcaat accttacgtt
     5941 cagatattct aaacttaggc ttgtcttgct gtttttttac tccgtttaat tttt
//
LOCUS       DANLXB010000151         5993 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLXB010000151 DANLXB010000000
VERSION     DANLXB010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5993
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(67..375)
                     /locus_tag="PXD41_002025"
     CDS             complement(67..375)
                     /locus_tag="PXD41_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6289528.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(377..745)
                     /locus_tag="PXD41_002026"
     CDS             complement(377..745)
                     /locus_tag="PXD41_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289529.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(720..1826)
                     /locus_tag="PXD41_002027"
     CDS             complement(720..1826)
                     /locus_tag="PXD41_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL6289530.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(2066..3109)
                     /locus_tag="PXD41_002028"
     CDS             complement(2066..3109)
                     /locus_tag="PXD41_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6289531.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(3213..3497)
                     /locus_tag="PXD41_002029"
     CDS             complement(3213..3497)
                     /locus_tag="PXD41_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289532.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(3527..3712)
                     /locus_tag="PXD41_002030"
     CDS             complement(3527..3712)
                     /locus_tag="PXD41_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6289533.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(3709..4275)
                     /locus_tag="PXD41_002031"
     CDS             complement(3709..4275)
                     /locus_tag="PXD41_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL6289534.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            4384..5337
                     /gene="msrP"
                     /locus_tag="PXD41_002032"
     CDS             4384..5337
                     /gene="msrP"
                     /locus_tag="PXD41_002032"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL6289535.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            5337..5921
                     /locus_tag="PXD41_002033"
     CDS             5337..5921
                     /locus_tag="PXD41_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL6289536.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT         1784 a         1264 c         1142 g         1803 t
ORIGIN      
        1 attagatggg ggaaaaaagg aaggctaaat taaaaaagct caaacaataa tgtttgagct
       61 ttggttttat tcaatgactt ttgcagtata tttgaggttt ccgaccgctt gtatcagggc
      121 ttggttatcc acactttctt ttaccaccac agtcgctttt cgctctttca ttgaggcttt
      181 ggtggaaatc acaccttcta ctgctcgtag ttctttattg actaaataaa cgcagagctg
      241 gcagtacatt tccggaatat ggaggacgac ggttttctct gcttgtttcg tttcaatttg
      301 agctgttttt tcttgtgcgt agcttgaatg aaccaaacca aaagccaaca gcatcgttgc
      361 gatatatttt ttcattttat tctccgctcc acatttccaa aatgtaaggc aatacataag
      421 ggtaagttaa aaagaacatc accaccacag aaactaccca atacaaaatg accagggttc
      481 tgcgggagaa gtatttggtg cagatgattt tgttggaaaa attcagcaac cagaagccat
      541 agccaaacgc agcgagcgaa atcagcaaca tcggcagttg tagaaactcc agttggttta
      601 gctccatcaa ccaaggggaa gagatgccaa acactaaata aaccagtggc ccaatacaac
      661 agaatgtgga ggtcaccgcc gacactatgg cggtcacgca cattgtgata aatttatggt
      721 tataactctt tagagatgaa ttcatagcca aattctttcg cctcaaacga gtttaacggg
      781 tcaccaccta cctcagcata agggtagcca aagttattca gtggtgtaag ttccggttgt
      841 ggatataaat cgaaatcacg tccgtgattg aagcctaccc agttcatttc ccagttgccg
      901 aataagtatt tcgagaccgc ttgaacatca gcatcatcca cgtctttttt ctcggctaaa
      961 cgcattttag cgacatcggc agaatctaca ggcacccagc cgaagcctgc taaatagaac
     1021 tctgcacggc agtgctgccc gccgctttca ttcgccacgc catcttttga gctaccaaat
     1081 gcggttttgg aatattgccc catttttacc gcttgcccta aacgaatacc aaacacttca
     1141 cgagcaggaa tgttagaggc acgagcaagt gctacaaaca ccgagttgat gtcggtacat
     1201 ttacctttta gcactttggt ggtgagaatt ttctccacat cgccatcgcc acagcctagc
     1261 accgagttat cacgttccat attatcaaca atccacttgt ggataagttc cgcttttttc
     1321 aacggatttt gctcgttacc cacaatttta tcggcatatt ctttcacaat accgtctgtt
     1381 ttaatgtgag ccgttggttt taaatactcc aatacatcaa cagaataagt gattttctcc
     1441 ggcatttggt aatttgccaa cgccccttga gccataggct cacgatcttg ggtttggatc
     1501 accattttca cttttagatc acgctttggt gcatcagtat cccaagtggc aaacaaggtt
     1561 tttgcaccat aagcgttatt ttctgtgata taggcgtttt tgtaacttcc ctcaaactct
     1621 atcgatttta ccgtttgata atcggtatca gacggcaacg gaatccacaa attagttgtt
     1681 cctttcgagc cttgtggcac aactaaatca taagattgcg taaattcgta agtgtgggta
     1741 gtggtgtgga aattgttctg ttgaacagga gcagcaaaag ccgtcgcaca gcttgaagcc
     1801 accaaagagg caataagttt attcattgaa atgatcctta ttagagtgaa aaaacagtta
     1861 aaacttaaca tattaagtat tctaactacg gattgaggtt gcatattagc caatcgagat
     1921 gggaaaagca atgggggaga tgatttttta gatagtgcaa gcgtccacgc ttgtactaga
     1981 aacaaagcta aaataatcaa taggcacaag cgtggacgct tgcgccatca gagagaataa
     2041 caagcggtca aaaatcctca aaattttaca aatagatttt ttgccctaat tttgcacttt
     2101 caaatacgct ttcgatcact tttagcacaa aaatgacgtc ttcgagtttg ataattggct
     2161 cagcattgtg agcgatggct tggtacaaat catcaaacaa gttttgataa ctgacttcgg
     2221 catttcgata gggctggcga accacattac cttccacttc agtgtgtaaa attccccagt
     2281 tctccttttc ttcgatattc caatctttgc caataggttg tacgccattt ttcagcaaat
     2341 cttcttgatt atcgggagtt tgtttcagat aagagcctaa ttttccgtgt aatacaaatg
     2401 tcgggcttgg ttcacgagca tatcggctgg ctttcagcac cactttaaaa ccgttagcat
     2461 aatagagctg aatatcaaag ttatcatcaa ccaatgcccc ttcgtgctga taacgcacat
     2521 cagcatacac cgcctccggc ttcccgaaaa gatacaaagc ttggtcaatt aaatgtacgc
     2581 ctaaatcata cactaaacct gtaccaagct cgcctgattc tttccatact ttaacatttt
     2641 tctctttcgc ataacggtca aaacgaattt cgcaatctac caactctccc agtaaatttt
     2701 gctccattag cgattttgcc gtcgcaatat ggctgtccca acggcggttt tggtacacat
     2761 aaagcacctt tccttgccgc tttgcaagtt ccgccaactc ttccgcctca gccactgttg
     2821 ccactaacgg tttttcaact aaaacgtgtt tgcctgcaag caatgactct tttaccattg
     2881 cataatgggt ttgattcggt gtggtaatca gcactaaatc cacttctggc gttaaaagag
     2941 cgttgaaatc ccgcactgtt tctgcattcg gcaaccattc tgccgcattg ttagaggttc
     3001 gttcatatac ctttacaata ttaaaacgag catcttgttt caaaaacggg atatgaaaaa
     3061 ctcggctgga aaagccggca cctgcgatgg caatattgat gggttgcata gacaatcctc
     3121 ataaaatttt gatgttatct gcttaaataa acaagcggtc aaattttagg aaaattttgc
     3181 aaaaaacaga taaaatacga ccgcttgttt aactaatcat aggttttgca aacaatatct
     3241 ttttcttcac aaaacatttc actgtggttt gcacggcatt gcttttgtac atttaatttg
     3301 gctctgcctc ggctactatg ttcactacga tattcctgag taaatggctt tagagtacaa
     3361 atgtgaacct ctttggaatc aagtggatct gagacaccaa ttataatcgg catagggata
     3421 ccggcttgcc ccgtaggagt aaccggcacg acacagccac ttaatagtat gcttaaactt
     3481 attaaccaat aacgcatatt tttctccttt taaaatgtat aataaatcag aacggagcat
     3541 ctttatcgtt acagtaagct cttaatatct tgcctaattt cttggtattt ttattaaaat
     3601 ttcggcattt agggcatacc aaaagatgca actgcaaacg catatgttgt tgcaaacgaa
     3661 gtttctcatc acaagactgt gaaataagtt ctgttgcttg cctgcatttc attttgattc
     3721 ctctctaaac caattgcgag ataaacactc ttgtaaacgt aaacgagcac gatgaagtaa
     3781 tacatttaag ttagagagag aaatttcaca ttcttggcaa atttccgcac tactcatctc
     3841 caaatgttca cgcatcataa atactcgtgc ttgctgggcg ggtaatttat ttaaacaaat
     3901 atcaaaaatt gcccaaaatt ctttttggta agttgattga gctacccccc tccattcagt
     3961 tacatcttga tgttccaacc aatgatcgtg gcgatcgaaa aaggcacttg gtgattcttc
     4021 ttcctcacat agagaactga ctggaatatg tcgttttcgt gttctgagta aatctaaaat
     4081 tttgttcttt aaaatagcaa aaatccaagt tttaagtgca gcttctcgcc gaaaagaggc
     4141 tgaatgctta taggcattgg ttaaggcatc ctgtacaaca tcctcagcta aatctttatc
     4201 ggctagttgt agggtggcaa atttaaccat ttgctttcta atctcttcta tctgtgtaga
     4261 agatagactc ttcatatatc tcctttaggg aatacccaat aaaaaattac acttattttg
     4321 taagaattct agatcagctg agtccaaaat aataacaaca attcataaaa aaaggatagt
     4381 tcgatgaaaa aattaacaat tcaagatgtt acacccgaaa ctattttcta ccaacgccgt
     4441 aaaattatta ccgcgttagg tttaggtatt gcagcttctg cattgcctaa agtaagtatg
     4501 gcagaaacac aaagacactt gcaatcacta cagtttaaac cggatccaaa taaagggctt
     4561 gaactcactc cggaaaacaa agtaataggc tataacaatt tctatgagtt tggcgtggat
     4621 aaaagtgcac cagcaaaaaa tgcggcaaac ttcaaaaccg atccttggac attggaaatt
     4681 ggcggagaag ttgaaaatcc gtttagctta aatcatcaac aattgcttaa tacgtttcca
     4741 ctagaagaac gcatttaccg ttttcgctgt gttgaagcgt ggtcaatggt tgtgccgtgg
     4801 atcggctttg agttagctcg cttaattgag atggcaaaac caaccagtaa agccaaatat
     4861 gtggtctttc acactttata tgatcctgca caaatgccgg ggcaaaaaaa tcgcttgcta
     4921 ggcggtggga ttgattatcc ttatgtagaa gctttacgct tagatgaagc cttaaattca
     4981 ttaacactac tatccgtcgg tttatacggt aaaaccctgc caccgcaaaa cggtgctcct
     5041 attcgcttag tcgtgccttg gaaatatggc tttaaaagta ttaagtcgat tgtgaaaatc
     5101 acctttgctg aaaaacgccc actcactact tgggaaagtc ttgctccaaa tgaatatggc
     5161 ttttatgcta atgtgaatcc aaatgttgat catccacgtt ggtcgcaagc atctgaacga
     5221 gtaattggtg caggcgggtt attatccgtc aaacgccaac caacactaat gtttaatggc
     5281 tacgaaaatg aagtggcaaa tttataccgt ggcttagatt taaaggtgaa ctactaatgc
     5341 taacctggtt acgtatactc attcatcttg gctgtttatt accgctagtt tgggtagcac
     5401 agctattata tacgggtaat gaaacaatat taggtgccga tccgattaaa gagctggagc
     5461 attttctcgg ttatggtgca atcgtcattt tttgtataat gtttctactt ggtattgccc
     5521 tacaatacct aaagaaaaac cagtatcaaa ttttacgccg tccattgggc ttatgggcgt
     5581 ttgtatgggc agctctacat atttcaagct atctattgtt agaattaagc cttgatgtaa
     5641 aattattttt tagcgagctt gccggtcgcc catatttgat tttaggagca gctgcttttt
     5701 tcattctaag cataatggca ataacttcgc tgcctatgct aaaacgaaaa ttaggaacac
     5761 gctgggggac gattcaccag tgggcttatc ctgcattagt attggcgatg gtacattatt
     5821 attggtcggt aaagagcgta acattcgatc caattatcat cggagtctta gtgctgttta
     5881 ttgttgctca taaaatacag gctaaatttg caaaaaaata gcaaaatcac accgcttgca
     5941 gcagtcaaac tacatacaaa aaataagggg ctgtcctaga taacgactaa aac
//
LOCUS       DANLXB010000152         5945 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLXB010000152 DANLXB010000000
VERSION     DANLXB010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5945
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            26..1012
                     /gene="cas1c"
                     /locus_tag="PXD41_002034"
     CDS             26..1012
                     /gene="cas1c"
                     /locus_tag="PXD41_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL6289537.1"
                     /translation="MTTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHIFCFGNVLVS
                     PFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIA
                     AKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGIEGDAAARYF
                     GVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGVGLDPQIGFL
                     HADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAVTLKPEARKL
                     LFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR"
     gene            1079..1372
                     /gene="cas2"
                     /locus_tag="PXD41_002035"
     CDS             1079..1372
                     /gene="cas2"
                     /locus_tag="PXD41_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL6289538.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1564..2533
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1564..1583
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2783..4258
                     /gene="rng"
                     /locus_tag="PXD41_002036"
     CDS             2783..4258
                     /gene="rng"
                     /locus_tag="PXD41_002036"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL6289539.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4412..5914
                     /gene="lysS"
                     /locus_tag="PXD41_002037"
     CDS             4412..5914
                     /gene="lysS"
                     /locus_tag="PXD41_002037"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL6289540.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
BASE COUNT         1752 a         1094 c         1390 g         1709 t
ORIGIN      
        1 gcgcaaacta caaaacaccc tctacattac cacccaaggt agctatttgc acaaagagcg
       61 agaaaccttg gtggtggagc aagatcggaa gaaagtggca cagttgccga ttcattccat
      121 tgggcatatt ttttgttttg gcaatgtgtt agtgtcgccg tttttaatgg gattttgtgg
      181 cgaaaataac gtaaatttag cgttttttac cgaaaatggg cgttatcttg ggcggttgca
      241 ggggcggcaa agtggtaatg tattgttacg ccgagcccag tataaaaagt cggagaccaa
      301 ccctgttcct gtggctcgca acatcattgc agccaaaatt caagcatcta agcgggtgtt
      361 acaacggcaa attcgtaatc acggcgaaaa tgctgacctt caatcgacaa ttaccgcatt
      421 aaattacagc ctgcaacagt tgaaaacagc agacaatttg gatttgattc gtggcattga
      481 gggcgatgct gcggctcgtt attttggggt gttttctcat cttatcaaag aaaatagcgg
      541 tttccacttt gacggacgta atcgccgccc acctcgtgac ggtgtgaatg cgttgctttc
      601 atttctttat agcattgtag ggaaagatat tagcggggca ttgcaaggcg tggggcttga
      661 tccccagatt ggctttttgc atgcagatcg ttcggggcga gatagcttag ctcaagatat
      721 tttggaggaa tttcgagcgt ggtgggtgga cagaatggtg ctgtcgctga tcaatcgagg
      781 gcaggttaag cctgatgatt ttgtgacgga agccagtggt gcggtaacgc tcaagcctga
      841 agccagaaaa ttactatttc aaaccttgca agcgaaaaaa caagaaaaaa tcatccaccc
      901 atttttagag gaagaagtgg aaatcggctt gttaccttat atccaagcga tgttattggc
      961 tcgtcatttg cgtggcgatt tggcagaata tccgccgttt ttaatgcgtt aaaatctgca
     1021 aaattttgtt gaaatttgac cgcttgttta tgttttattc attgaggaat tagcaactat
     1081 gctgatgttg attacctacg acatttcatt tgatgacccc gaagggcagg ctcgcctacg
     1141 ccgtattgct aagcattgtt tggattatgg tgtgcgggcg caatattctg tgtttgagtg
     1201 tgatgttact cctgctcagt gggtaacatt gaaaaataaa ttattggcaa cttacaaccc
     1261 agactgtgat agtttgcgct tttaccattt aggcagtaaa tggaggaata aagttgagca
     1321 ccatggcgca aaaccttcag tggatatttt taaagatacg ctgattttat aaatcgctag
     1381 cctgtagttc tcataaaaat gtagcaaggt tagcgaatct atattgttct ttaataatca
     1441 aggaattaga aaaaataagg cacaatatat tggcgatatg ctatacttta tccactctct
     1501 acaaaacgtt agcgaataaa gggctaaaaa gcctgatatt tcaatacgtt atcttatagg
     1561 gaccagccac ctacgcgtgg ctgcgaattg aaaccctata acgagcaatg gcattttgat
     1621 ctacggtaaa ccagccacct acgcgtggct gcgaattgaa acctttttca agaatcaaga
     1681 ttaagagatc caaacaacca gccacctacg cgtggctgcg aattgaaacc accgctgcta
     1741 cttcggttat cggagtagtt tgcacccagc cacctacgcg tggctgcgaa ttgaaacgtg
     1801 gcacagtaac acgagcagat gctgataaac gcccagccac ctacgcgtgg ctgcgaattg
     1861 aaaccagcag ccgttgttac cgtggtgcaa tgcttgcgcc agccacctac gcgtggctgc
     1921 gaattgaaac tacacttatt gccatagggt agtagtaatc ttttacccag ccacctacgc
     1981 gtggctgcga attgaaactg cgatttttgg atttttcggg cgataaatga taccagccac
     2041 ctacgcgtgg ctgtgaattg aaactcgtgg ctggttatac aaagaaaagc attgttgggc
     2101 agccacctac gcgtggctgt gaattgaaac ttaaatctaa agctaaagct attttattaa
     2161 ttaaagcagc cacctacgcg tggctgtgaa ttgaaacttt accgtttacc gattggattt
     2221 taatgctaga ggcagccacc tacgcgtggc tgtgaattga aaccctaaat tgccgtaaaa
     2281 atctgccatt agctacgcgc agccacctac gcgtggctgt gaattgaaac ctcataacga
     2341 atccaatcct gttcggttaa tccccgcagc cacctacgcg tggctgtgaa ttgaaacagg
     2401 ggcgtgtacc gcaatcaatt ttaattataa ccaagcagcc acctacgcgt ggctgtgaat
     2461 tgaaacctcg tcttgaattg gaaaatcaag ggcgacaata ggcagccacc ttcgcgtggc
     2521 tgtgtattga aacggtgtac ccacaaatcc tatgttttcg ccattggctg ctaccttcgc
     2581 atcaatatat attgaaatat caatggcaaa tttgtatgtt gttaattaga ctgattgcat
     2641 ctgctatgta tcatagtaat gacgaaaata ttctattttg caaaaaataa tcagaaatta
     2701 cccgcttgtt cgaactgagt ttttgttttc taagatgtga aatgatacac tttagatagt
     2761 tttaaaatat agagacagta agatgagtag tacggaatta ttagtgaatg ttaccccaag
     2821 cgaaacaagg gtagcgttgg tagaaaacgg aatattgaaa gaattacata ttgagcggga
     2881 agctaaacgc gggattgttg gtaatattta taagggaagg gtgacaaggg tattaccagg
     2941 tatgcaatct gcttttgtgg atatcggctt ggagaaggct gcttttttgc acgcttctga
     3001 catcgtttcg catacggaat gtgttgatga aaatgaaaag aagcaatttc tggttaaaga
     3061 tatttctgaa ttggtgcgtg aagggcaaga tatagttgta caagtagtga aagatccaat
     3121 tggtactaaa ggagctaggc tcactactga tattacgtta ccatctcgtt atttagtgtt
     3181 tatgccagaa aatagccatg tgggagtatc tcagcggatt gaaagtgaag aagagcgtgc
     3241 tcgtttaaaa agcttggttg agccttattg tgatgaactt gggggcttta ttgtacgtac
     3301 cgctgcagaa gaggcaactg aagaaagttt aaagcaagat gttgaatttt taaaacggtt
     3361 gtggcgtaaa gtattagaac gaaaagggaa atattccgca aaatcaatgc tttatggaga
     3421 gcttgcgctt gctcaaaggg tactgcgtga ttttattggt acacatatca attcggttag
     3481 aatcgattca aagctaactt atgagcaagt gcgagaattt ttagctgagt ttatgccaga
     3541 attaacggat tgtgtcaccc tctataccgg tcagcaaact ttatttgatg cctatggtgt
     3601 agaaaaggca atccaaaagg cattggataa acgggttgat ttaaaatcgg ggggctattt
     3661 aattattgag caaactgagg cgatgacgac tattgatatt aatactggtg cttttgtcgg
     3721 acatcgtaac cttgcacata cgattttcaa cacaaatatt gaagcaatac aggcaattgc
     3781 acaccagcta cagttgcgta atttaggtgg tattatcatt attgatttta ttgatatgca
     3841 agaggaagaa catcgtgagc gcgttttaca atcgttacaa gaggcattaa aaggcgatcg
     3901 tgttaaaacc aatgtgaatg gctttactca gcttggcttg gtggagatga ccagaaaacg
     3961 tacaagggag agtctagagc gaattctttg ttgcgattgc caagcttgcc aagggcgtgg
     4021 cacagtgaaa actgtagaga cggtttgcta tgaaattatg cgtgaaattg tgcgtgtaca
     4081 tcatttgttt aagacagaaa atattcacgt ttatgcagct aaagatgttg ctgaatattt
     4141 aattaacgag gaaagccacg cattattggc tgagcttcag gcgtttatcg gtaaaaaaat
     4201 tgagattaaa cttgagccat attatcatca agagcagttt gatgtggtcg tgatgtaatc
     4261 tattacttgg ttgaggctaa atagttagcc tcaatatcgt tagttacaaa aaatttagaa
     4321 aatctgaccg cttgtttcct atccaaattc ctcaaaataa cgtataatcg tccagtttta
     4381 tttatccttt tttgaaatct aaggtaattc aatgtctgaa gtagaaaatc aagaattaga
     4441 tctaaacggt gaaatgttag cccgccgtga aaaattaaac aaaatccgtg agcagggtaa
     4501 cgcatttcca aatacattcc gtcgtgatgc gttagccaaa gatctgcacg ctcaatatga
     4561 tgcagtggaa ggtgaaacct taaaagaaca gaatattcaa gtgaaagttg ccggtcgtat
     4621 tatgttaaaa cgagtaatgg gtaaggcatc tttctttacc attcaagatg tgagcggtgc
     4681 gattcagctt tatgtagctc gtgataactt aagtgacagc gtttacgaag aaaaagtcag
     4741 cctttgggat ttaggcgaca ttgtgggcgt cgaaggtgcg ttatttaaaa ccaaaaccgg
     4801 tgaattaacg gttcgttgct ctgaagttca acttttaacc aagtctttac gcccgttgcc
     4861 ggataaacat cacggtttaa cggatttaga aactcgttat cgtcagcgtt atttagactt
     4921 gatttctaat gaagaatctc gccgtacttt tatgatccgc tcgcaagtag tttcaggcat
     4981 tcgcaaattc ttcttagaaa gagactttat tgaagttgaa acgccaatgt tgcaagtgat
     5041 cccgggcggt gcggcagcga aaccgtttat cactcatcat aatgcgttag atgtggatat
     5101 gtatctgcgt attgctccag agctttactt aaaacgttta gttgtgggtg gttttgagcg
     5161 agtatttgag cttaaccgta acttccgtaa cgaaggggtt tcagtacgcc acaatcctga
     5221 atttacaatg attgagtact accaagccta tgcggattat cacgatttaa tggataatac
     5281 cgaagaactg ttacgccaat tagccttaga tattcttggc acaactgacg taccttatgg
     5341 tgattatgta ttcgatttcg gtaaaccgtt tgagcgtatt acgatgcacg atgcgattgt
     5401 gaaatatggt aacggcattc aacgtgaaga tttagacagc ttcgagaaaa gtgtggaaat
     5461 tgcgaaaggc ttaggcattg aaattcaaaa atcttggggt ttaggctcgg tagtcaatgc
     5521 gatttttgaa gaagtggcag aacatcaatt aattcagcca actttcttga tggctcaccc
     5581 ggcagaaatt tcaccattag ctcgccgtaa tgatgaaaac ccagaggtaa ctgatcgttt
     5641 tgagttattt atcggtggtc gtgaaattgg taatggtttc tcagaattaa acgatgcaga
     5701 agaccaagca gagcgttttg atgctcaagt tgcggcgaaa gatgccggtg atgatgaagc
     5761 aatgtttaaa gatgaagact ttatcgtggc attggaacac ggtctgccgc caacagcggg
     5821 tgaaggttta ggaattgacc gcttagtaat gattttcgct aacgccccat caatccgtga
     5881 tgtaatttta ttcccagcga tgcgtcagaa gtaatcagaa atagaacaaa agcacacttc
     5941 ggtgt
//
LOCUS       DANLXB010000153         5922 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.155, whole genome shotgun sequence.
ACCESSION   DANLXB010000153 DANLXB010000000
VERSION     DANLXB010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5922
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..242)
                     /locus_tag="PXD41_002038"
     CDS             complement(<1..242)
                     /locus_tag="PXD41_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289541.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTSYRYQQ
                     AVEQSGVDALLNQNRRVPNLKNRVDEATEQAVVKFA"
     gene            complement(341..571)
                     /locus_tag="PXD41_002039"
     CDS             complement(341..571)
                     /locus_tag="PXD41_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289542.1"
                     /translation="MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNV"
     gene            complement(692..1009)
                     /locus_tag="PXD41_002040"
     CDS             complement(692..1009)
                     /locus_tag="PXD41_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6289543.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(1002..1160)
                     /locus_tag="PXD41_002041"
     CDS             complement(1002..1160)
                     /locus_tag="PXD41_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289544.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(1214..1369)
                     /locus_tag="PXD41_002042"
     CDS             complement(1214..1369)
                     /locus_tag="PXD41_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289545.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(1507..1764)
                     /locus_tag="PXD41_002043"
     CDS             complement(1507..1764)
                     /locus_tag="PXD41_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289546.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1778..1954
                     /locus_tag="PXD41_002044"
     CDS             1778..1954
                     /locus_tag="PXD41_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289547.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1958..2104
                     /locus_tag="PXD41_002045"
     CDS             1958..2104
                     /locus_tag="PXD41_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289548.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            2120..2326
                     /locus_tag="PXD41_002046"
     CDS             2120..2326
                     /locus_tag="PXD41_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289549.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            2323..3099
                     /locus_tag="PXD41_002047"
     CDS             2323..3099
                     /locus_tag="PXD41_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289550.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            3214..3626
                     /locus_tag="PXD41_002048"
                     /pseudo
     CDS             3214..3626
                     /locus_tag="PXD41_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3640..3795
                     /locus_tag="PXD41_002049"
     CDS             3640..3795
                     /locus_tag="PXD41_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289551.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3875..4849
                     /locus_tag="PXD41_002050"
     CDS             3875..4849
                     /locus_tag="PXD41_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6289552.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4936..5133
                     /locus_tag="PXD41_002051"
     CDS             4936..5133
                     /locus_tag="PXD41_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289553.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            5210..5452
                     /locus_tag="PXD41_002052"
     CDS             5210..5452
                     /locus_tag="PXD41_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289554.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(5612..5869)
                     /locus_tag="PXD41_002053"
     CDS             complement(5612..5869)
                     /locus_tag="PXD41_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289555.1"
                     /translation="MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQ
                     EDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF"
BASE COUNT         1760 a         1059 c         1202 g         1901 t
ORIGIN      
        1 aatgcaaact tcacaacagc ttgctctgtt gcctcatcca cacgattttt tagattagga
       61 acacgccgat tttgattaag taaggcatcc accccacttt gctcaactgc ttgttgatag
      121 cgataggatg tatctcgact catccccatc accttacagg cttgagagat attgcccagt
      181 tcttctgcta aatttaataa accggtcttg tgtttaatga gagggttgtt agaataaaac
      241 atgagagttt ccttttttgt ttagattgaa tttggacact catattctaa acgggaaact
      301 ctcacttttt agagtgaatt gtcagatcaa gtctgatctt ctacacatta tcataggttt
      361 ctactgcatg aataccacaa ccataatggt cagcaaagta agtagaacgc ttttgaggct
      421 taagggagaa cccattcatc tcagctctca tttcagcagc atttttcaag gcaacattta
      481 aattgtttga agactggcgt tgagcttcat ttttagctcg cacttcatta aaaatagaga
      541 taaacgtttg tgctttttta agtagagaca ttgtggttct cctgtttttt gcacctaata
      601 ttattgaact atggtaggct tggcgagcat tgccttgagt tttaattcgg ctacggtcat
      661 ttttcttttt atttccattt tatagctcct gttatgcttt gaatgcagag cgataatagt
      721 cggttgggta ttgttgacga caatggataa tggctaaaat ttgcacttga ttttctgttt
      781 ctcgatatat aattctataa cctcggcaaa agcattctct agtattttct actgaaccta
      841 taacaccaat tcgtggaaaa taagaaagat tatccaaagt gttatgaatt tccgcagata
      901 atttatcacc actttcatag ctataagtat attccacaac attacgaatg atttgttgta
      961 aattcatact tgctctgcga gtcattaaca cctcttttcg actaagcata cacggctccc
     1021 tgtagctctt gcaaggtttc atatatggtt ttttgacaca gttgacggct ttcttctaat
     1081 gaaataacac gtccgttttc tatatcatca agtccttgtt ttacttgctc tattaagaag
     1141 ttttggtatt cttctgtcat ggataactcc tatcattagt tgtatataga tatattagca
     1201 atgttacaaa ttgttaatcg tccagttctt gagcagtttc ttcaatagtt gattgaacta
     1261 acaatgtggc ttgctcaaga ggaatacctt ttccggattc taattcagct ctgccttttg
     1321 caattttttg agtaaggaac tcatcgtagc ctttttcttt aaatagcatt ttatgttcct
     1381 ttcacttatt acaaggcttt caggcatagg gattatgttc tcctaaatgc gaaatattgg
     1441 aataatttac gcttaaagca atagagtgtc aagagcaggg tttttggaag tgtggtttgg
     1501 gaatatttaa aaattatcat cataagtttc atcgtagtta tcgttttcat cgctggcatc
     1561 attttcatcg gaatattctt cttcgctata ttcctcttcg ttatatccat catcaagttc
     1621 aggttcttgt tcccttagtg attctttagc ttcaacttca ggcataaatt gctggtaatt
     1681 gtagaaaaaa gtgccatcgc tgcctttttc ccaaagtccg gcgtagttgt attttacata
     1741 ttcaggatca gcgtggcata tcatccctaa ttgaggggtg gcatatgttc gtatttacca
     1801 aggtgaggct tatggttggt gtgctgaaaa aggagaggca aatacagaat gccctgaggc
     1861 cttattggtg agtttaaccg gcgatatttt tgaagcagtc ggcggagata agctgaaagg
     1921 tgccaaaaaa tggcagcctt acaagaaaga atgacagatg gatacgacac aaaaacgtgt
     1981 ggctttattc atcattggat tatctgttgt gatgtggcta agaaagcata actgctgtac
     2041 agtgatattt gtattgttgt tggcagcgtt agcatttagc tacacgatgg aacatttata
     2101 ttagctgggg aactgaatta tggtaaagaa tgtggttcat gaagagatat tacataaccg
     2161 tgcagaatta cagcaagcgg ttgaaaaaga agaattttgt gcaaaatgtg ataactcagt
     2221 agtattccat ttacgtgata attatcacga atttacgctt gggttagata ctatattgca
     2281 gtgtctgcat tttgctgaag agaagggagc tatccggata ccttgaatat tgagtattca
     2341 ctcaatcatt gccaaggaga tggagtcgca ttttatggtc gacttggtac agatgatcta
     2401 atccagcttt tcaatcatct caatccacag aaacgtaaac agaaaatgtt tgctaatttg
     2461 ctaacgcaca ttgagtcttg ggaaacccac gatgatattg gttttgaaat tatacgaaat
     2521 cgctttgggt atcgttactc gcattggaat acgatggagc tttatgctaa aactgcagat
     2581 cagttagtgt ttttcaatga tagtgatgct cgaagaaact ggtattttcc gacttcaaaa
     2641 gtgtataaat acaaaggctt gtgggatgag tttattcagg atttagaaca gtatattaag
     2701 ggtacttccc gtgaaatgga atcggtcggt tatcaaatta ttgaagcctc gccgtatcaa
     2761 acggaaaccg ttttcaaatt taatacggaa aactatctag tagaactgaa acgtaaacct
     2821 tctgagtttt attcagagct tgttgattgg gcatttggtg atatgtgtga ttttgaagca
     2881 actatagagc agatttgtca agggcaactc tgttatgctg attttgaagc aactgttacc
     2941 gataagaaaa gtgaaattca gttaggtctt gctcgcttga gtggaataag ttactcgccg
     3001 aatgaccgtt cgtttagtgg ttatcgacaa gagcttattg gtgaggcgat tgcctctgct
     3061 cgccataatg cagcacgttt tgcctacttg cacgcctaat ttgcagattt gtacttcaat
     3121 ttgaccgctt gtagtggtta attttcaccc cgtggggaaa tattttccct attgggcaag
     3181 atgtttctcc actttttaat ttggagaaat gtgatgaaaa atgaacacaa tttagagcaa
     3241 cttaaatata tttgggataa ccgcaacctt gaaaataaag cctatcaata cctgtttcac
     3301 atttgcattg agccgatgaa aaaaggagat tggaatcgtt atacgatttg gcttaatttt
     3361 cacggcaact taatcaacgt gtcagacgtt gtatatcgag ttgtggaatc tcaaaagctc
     3421 aaggatgaca tcaaaatgtg gtatgacaat aataccattg tcgtccgata aaagttgaaa
     3481 caacaggctt catctcatat ttactgcacc agttctatca ggggatagcc tatattttac
     3541 tggaacaggg aatgattact gaaactgaag cagccgagaa aagttataac ttcagagctg
     3601 caaattgttt tcaacgtttg ctttaatgga ggtgagataa tggaaactcg cattgttaaa
     3661 gttatttacg atgatggtga ttatttcttt acccgaatca atgctgatga acaggctatc
     3721 cgtaattact acgccatagg cagttcaata ggttttgatg atataagaaa aattatcgct
     3781 gttgaaattt tataaaccac ccatagggga aactatttcc ccatagggtg atagcgtttc
     3841 cccatttttc tacccgaact ttggagaaac acttatgaac actcaaccta aatttgattt
     3901 ataccaacac atcactgacc gaattgttgt agcactggaa caaggtacag ccccgtggtt
     3961 aaaaccgtgg agccatccgg aatgcaatat ggcattacct cgcaatgcgg tatctaaccg
     4021 cttgtattcc ggtatcaata cactcttact ctggattgct actgctgaac atggttacaa
     4081 acagtgcaag tggattacag caaaaaaagc caatgaactc ggcggatata tccgtaaagg
     4141 ggaaaaagct actgtggtga tgaactaccg tcctgatgag agagagaaac tcgatgagga
     4201 agggaatatt gtgtatgacg aggaaggaaa tccggaaatg gaacgacact ttttcattaa
     4261 taagcacaat ctgttcaatc tggaccagtg tgaaaattta ccggtggaac tgtacgatcc
     4321 tgtatcagaa ccgaaacaac ctaaatctga gccaaaccaa tacgatattt ttgctgagat
     4381 tcggcagatt atcaaaggaa tggatttgca ggtggaaatg aagcctagca atcgggcatt
     4441 ttatcaacca ggtgaagata aggtcgtaat gccggagatg aagcagtttg caaatgctca
     4501 agcgtttcat agtgtattgt tacacgaaat gactcacgca acgggggcaa ataatcggct
     4561 taatcgggaa ggtattactt ccggaaaggc taaatttgga aacaaagtct atgcttttga
     4621 ggagttgatt gctgaaatgg gcggtgcatt tttatgtgcc taccttggtt ttgatactgt
     4681 gcctcaaaat gcggcgtata ttgaaagttg gattcgagta ttgaaagaag ataaacgggc
     4741 gattgtccgt gcttccggaa aagctcgtga agcctgccaa tacatgttag acgcattaaa
     4801 cgtcgcacag ttggctgaca aatacgatgt atttgaagaa gctgcttaac aaatttgccg
     4861 aaaggcatat ctcaagggga gacctatccc tttgggcata gtgtttccct attttttatt
     4921 aaatggagaa aagctatgac aaaatcaact gaaatacctc gtggacatga taactgggtt
     4981 attacaggca gagacaatga tgggaaatgg cataaagaac gttttcttta ttattctcgc
     5041 cgtgaagcca tccaacagtt tcgtcgaaaa cacaactgcg taggtaaaca tagtgttatt
     5101 gaatcaataa cacctcaatt tggctggtat taaccggctt tcccgtgggg agatactctc
     5161 ccttcggagc attgtgtctc cctttttatt cacttaacta gaggacacaa tgttcaatct
     5221 aaacttattt aaacgcccta ttgagctttc aacgcttgaa tcttggtcta aattctgtga
     5281 tgatgtcggt aaagttgcat ttattgcgat acctccgatg atttatagta attatgatct
     5341 atgtatcaaa ataggaaaca taagtgcttt attggcaatt acctatggat tcttattatc
     5401 aggcaggact atccgtcaat ttattgagaa ggagaaatca agatgggatt aacaatcggc
     5461 ttatggatca ttgcttttat aggctttgca ctggtttttt gggcaaatag cttactcaaa
     5521 gagcaagatg aacgccttaa acagctaaaa aaatagctca actttacact caatacggca
     5581 catttggtgc cgtatttcat tcttatccta attaaaaatt agaattatat ttttcccatt
     5641 tttcagcccc acttatatca tcacctccag ttgcctcaaa aatttcatta gataagctga
     5701 caattaaggc ggtagggcat tccgtgtttg catcttcttg ctctgcacac cagccatagg
     5761 cttttccctg ataaatacga acataaccac gctctagcat aaaagggtga gaatccttgt
     5821 gattttgacg aaatttttga gcaatagaca aaatttgttt attgttcata attatttttc
     5881 ttattgctta tatgctgaaa attgatgatt gaatttatta ta
//
LOCUS       DANLXB010000154         5681 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLXB010000154 DANLXB010000000
VERSION     DANLXB010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5681
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(23..643)
                     /locus_tag="PXD41_002054"
     CDS             complement(23..643)
                     /locus_tag="PXD41_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL6289556.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(621..1595)
                     /locus_tag="PXD41_002055"
     CDS             complement(621..1595)
                     /locus_tag="PXD41_002055"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL6289557.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            1705..3312
                     /gene="rmuC"
                     /locus_tag="PXD41_002056"
     CDS             1705..3312
                     /gene="rmuC"
                     /locus_tag="PXD41_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL6289558.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            3375..3959
                     /locus_tag="PXD41_002057"
     CDS             3375..3959
                     /locus_tag="PXD41_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL6289559.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            4056..5138
                     /gene="prfA"
                     /locus_tag="PXD41_002058"
     CDS             4056..5138
                     /gene="prfA"
                     /locus_tag="PXD41_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL6289560.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            5250..>5681
                     /locus_tag="PXD41_002059"
     CDS             5250..>5681
                     /locus_tag="PXD41_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289561.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILS"
BASE COUNT         1804 a         1111 c         1198 g         1568 t
ORIGIN      
        1 ttatccagtt gcaagcattt ttttaggatt ttcgatcaag atcacaaaaa taaatttgcg
       61 agcaaggcaa tgcccttggt tcctcaaagg gattaagagc attaatcaac ataatttttt
      121 catattgatg caaatcttgc ttggctattt tggctaaaac gactttccct tcatcaagca
      181 atttactaag ctgagtgcct ttgagcaaat aatgttgcgg gctataccag attccttgtt
      241 ttaggaacag taaattgccg atggagcaat cactgacgta gccattattg agaataatca
      301 cctcttcatt ttgtaaaata gggagcaaat caaaccgctt gcggtcgcta aatttgaggt
      361 gataatccca attttccacc tcaaccaagc gaaaacgttc tacttttttg ggcgaataga
      421 taaaaaattt cagctcaaat tctgttgcgt tgtaatctat tcggcaacgt actttgcccc
      481 gttgagaagc ctctggcaca actaaaatat cagcaaggct aaaacgaggt tcacagccaa
      541 aatattcttg tgttgcttgc tcaaaacgtt gttgatgata ctgtaagttc tgaactttgc
      601 cgtcaataat cgaaagggtt tcaaatagcg gaaatcggca catagacttt ctctaacagt
      661 tcattatatt catcagttaa cacactttgt gaggtaatgc caccaccact atgaaacaca
      721 agcccgtttg aggtttgagc aatgtaacga attgccaccg cactttctaa gctctcgcca
      781 tcaaaataac caaaaatacc ggtgtagtaa ccccgttttc ctaattctgc ttgctgaata
      841 atcgaaaccg ttttctcttt cggtgcaccg ctaatggagc cggcaggtag taattttgcc
      901 aatatcgaac cgatattttc ttgccaattt tcacctaatt cgccacagat ctcggaactt
      961 gtctgcaaaa ttgcccctcg atgggtttct actttttcca cataacggta tttagtaact
     1021 tcaatatttt tcgccaccaa cgccaagtca tttcggatca aatccacaat ggtattatgt
     1081 tcggtaaact ctttttccga agccattaat ttctgctcgg cattctcctc atttgcatta
     1141 attgtgcctt tcatcgggta ggaaaaaatg cggttatttt caattcgcac aaagcattca
     1201 ggggaaaaac agacgaacct gccttgcaaa taacatttat attttgcttt gctggcggca
     1261 aaaatttccg ccaatgaata attggtttca atggcagtcg ggtagctcaa attcagcaag
     1321 tagctattgc cggcttgaat ttcctttttc actaattcaa acccggtttg gtattcgcta
     1381 aacggaatcg gatttgccga taattcaaaa gctttagtcg gtttttcaac cggcttttcg
     1441 agattcgatt tgcaaaaaaa ttcaaaaaaa agaccgcttg cgtgagcctg ttctagcgga
     1501 aaaataagtg gcttttgctg ctcaaaatca attaaaaaga aaaaagggcg ttttgcttgc
     1561 ccgtagtgat tggcttggtg aataaaatct tgcatagaaa acacaatggc tgaaattggc
     1621 tgaatcatca aaagctctgt tataatgcaa agcaatagat ttgaaaagca ttttttaaaa
     1681 aaggttttac cgatgaacaa caccattcat tttcaagaaa ttgggatcta catcgccctt
     1741 gccgtttgtg tgctggtagg cgtttatctc tttttcttga aatcccgtta tcagcgaaat
     1801 gcctacgaat taagccaaga tcttggcaaa atcaccgaaa attttgaaca aattcagcaa
     1861 aaatatgagg tgttggctca agaaaaaaat cagcttgagc agtgggcaat tcaacaacag
     1921 accaaatatg aagcagtgag tgaacgttta aacgagcgag atgggcaatt gcaacgattc
     1981 caacaaaaaa tcgaacttgc cgaacagcaa gaaaaccagc tggaacgcta tattaatgag
     2041 ctaaaagaac gtgtgggttc ttcccaagca aaggcagaaa gtttggaaga acagctacaa
     2101 tttagccaaa gttcactctc aactaaagag cgggaaaatc aagcgttatt tagccgttta
     2161 aacgaggtac aaaacgagct gaccgaactg cgtactacgc tttcggaaaa acaggcaaat
     2221 tttgaagcac aacaacgcaa ttttattgag gtaaaacaac agcttaatgt ggaatttcaa
     2281 catttggcac aacaaattct tgacgaaaaa agcaagcgtt ttagcgaaac caatcaaagc
     2341 tcgttagaag ctctactgaa gccgttcaaa gagcaaattg aaggctttca aaaacgggtg
     2401 aatgaggtac atagtgagtc gctcaaaggc tcggcaaatt tagaggctga aattaagcgg
     2461 gtgctacaaa ttggcgtttc aatgtcggaa gaggcacaaa atctggcaac ggcattaaaa
     2521 ggcaataata aaattgccgg caactggggt gaagtacagc ttgaaagtgc cttacaatct
     2581 gccggtttac tcgcaggcga gcattaccaa gcccaagaga gttttcgtga tgaagagggg
     2641 cgacgttttg cccccgattt tgtggtgcat ttgccggatc aaaaacatct gattattgac
     2701 agtaaagtct cgttagtagc gtacgatcaa gcggtcagat cagaagaaaa ttttgcaatt
     2761 tctcaagcct tagacgaaca ttgccgttcg ctacgcaatc atattgaggg attgtctaag
     2821 aagaactaca gtgcattatt aggcattaaa agcccggatt ttgtactgat gtttattccg
     2881 atagaaccgg cttatattga agcgatgaag cacgatccgc aactgtttaa ctttggctat
     2941 gaacgcaatg tgattttggt ttctcacacc accttaatgc cgattttacg cacggtcgcc
     3001 aatttatggc ggattgaacg aggcaacagc gaggctcgtg aaatcagcga aaaagccggc
     3061 gaaatttaca accaagtgtg tgcggttgcc gatcggttag ctaaattagg taacacgcta
     3121 aataccgcaa ataatcaata caatcaaacc gttacctcgt tagtgggacg gcaaggctta
     3181 ctgggcaaag tggaacgatt ccaacatctt tcaagcaaag caagccaaat tgtgccgcag
     3241 gttgagctga ttgaaaatga ggtggatact attaaattgg aaatggtatc gagagaatta
     3301 ttggaagaat agtcaaatct ctttattccc tacaaaaata tggggtgatt tgaaatacta
     3361 aagaaaataa taaaatgcta aaaaaactat taatcatcga caaccacgac tcttttacct
     3421 tcaacttggt ggatttactc cgtaagcttg atgtgccggc gaaagtggtg ctggttgaag
     3481 agcttgacct caatgaggtg gagcatttta gccatatttt gatttcgccc ggccctgatg
     3541 tgccgagagc ctatctacaa acctttgcga tgttggagcg ttatcatcaa accaaatcaa
     3601 ttctaggcgt ttgcttgggg catcaaacga tttgcgagtt ttttggcggc aagttgtata
     3661 acctaaacga tgttagacac gggcagcaac gcacgctcac tcaaattgag cctaacccca
     3721 tatttaaagg tttgcctaag cagttgaaag ttgggttgta tcactcttgg ggcattttgc
     3781 aaaattcgtt gcaaaataca ccgcttgtac caaccgcagt ttgcgatcaa aatgtgttaa
     3841 tggcgtttaa acaccaacat ttgccgattt ttggcgtgca gtttcacccg gaatctttta
     3901 tcactgaatt tggtcaacaa atgttggcaa attggcttga gattacacaa gatttttagc
     3961 gtgaaatccg ctataatccg tcagttattt acccttttaa aatctgtagg ggcgaaaaat
     4021 ttttcgcctt acttaatatg caagagataa tttaaatgaa agattcgatt atcaataaat
     4081 tagaaagttt aagtgaacgc cacgaagaac tacaggcgtt acttggcgat gcctcaatta
     4141 tttccgatca agacaaattc cgtgcttatt ccaaagaata ttcgcaatta gaagaagtgg
     4201 ttggcacctt taaccgctgg aaaaagctga acaatgatat tgaagaggct caattattac
     4261 tcgatgatcc tgatatgaag gatatggcag cggaagaaat tgcggaaaat aaagccgaaa
     4321 tcgagaatct tgagcaacat ttacaaattt tattattgcc gaaagatccg aatgatgaat
     4381 acaacgcctt ccttgaaatc cgtgccggaa cgggcggtga cgaggctggt atttttgccg
     4441 gtgatttata ccgtatgtac agccgttatt gcgaaagtaa acgctggcga attgaagaaa
     4501 tgtcggcaaa tgagagtgaa caaggcggat ataaagagat catcgttaaa atttcaggcg
     4561 aaggcgttta cggtcagctt aaatttgaat cgggcggaca ccgtgtacaa cgtgtaccga
     4621 aaaccgaatc acaagggcgt attcacacct ctgcttgcac ggtagcggta atgccggagt
     4681 tgccggaaag cgagatgccg gaaatcaatc catctgatct gcgaattgac acctaccgct
     4741 catcgggtgc aggcggtcag cacgttaata ccaccgactc tgcagtgcgg attactcata
     4801 tcccgaccgg gattgtggtc gagtgtcaag atgagcgttc acagcacaaa aataaagcca
     4861 aagcgctggc agtgttagcc tctcggattg tacaagttga gcaagaacgc caagccgcag
     4921 agcaagcgga tacccgccgt aacttacttg gctcaggcga ccgttcggat aaaatccgca
     4981 cctacaacta cccgcaaggg cgtgtgactg atcaccgtat taacctcacg gtttatcgtt
     5041 tagacgaagt gatgaacggc aaaattgatg aattgataca accgattatc actgaatatc
     5101 aagcggatca gttagcggcg ttgtcggagc aaaattaatt ttattgtaag ggtacactgt
     5161 gtgtgcctgc caaatataaa tttgcaaaat tttgactatt tttgatcgct tgtagtttct
     5221 aaaaagttta aaaatttgag gaaaacaaaa tgagaaagtt aggtttatta gcagtattta
     5281 ctttagtatt atcagcctgt tcaaattcaa caaaaattga acaaaccatt ctttccaagc
     5341 aggatatcgt aggctcttgg gtatgcgcta ttaaatacga tgatctaaaa gtaagcactt
     5401 tagatttttc tgaatttaaa gctaatggcg aaatgacgaa tttcggtgat atttctgatg
     5461 agaattttga gcccattaaa tttacttatg taacaggaga taaagggaag tgggacttaa
     5521 aaggaaatcg attagtgatt gattatgatc tttctgaacg taaagtaaaa agaacaacac
     5581 caaaaaaatt tttagagttc ttgaaacagg aagagcgtaa agcctcaaaa acagctaaaa
     5641 aactccttaa atatgaacaa gggattttca atattctgag t
//
LOCUS       DANLXB010000155         5567 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLXB010000155 DANLXB010000000
VERSION     DANLXB010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5567
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            12..506
                     /locus_tag="PXD41_002060"
     CDS             12..506
                     /locus_tag="PXD41_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6289562.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            complement(560..1429)
                     /gene="htpX"
                     /locus_tag="PXD41_002061"
     CDS             complement(560..1429)
                     /gene="htpX"
                     /locus_tag="PXD41_002061"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL6289563.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(1517..2599)
                     /gene="dinB"
                     /locus_tag="PXD41_002062"
     CDS             complement(1517..2599)
                     /gene="dinB"
                     /locus_tag="PXD41_002062"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL6289564.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            2722..3633
                     /locus_tag="PXD41_002063"
     CDS             2722..3633
                     /locus_tag="PXD41_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL6289565.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            3739..5505
                     /gene="aspS"
                     /locus_tag="PXD41_002064"
     CDS             3739..5505
                     /gene="aspS"
                     /locus_tag="PXD41_002064"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL6289566.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
BASE COUNT         1558 a         1215 c         1137 g         1657 t
ORIGIN      
        1 actacaattt tatgacagaa tatctcactt cctttttcag tttattcttt tccgaacaaa
       61 atcaactctt tactatgttt ctgagtggat ttctaagcgc taccctctta cccggaaatt
      121 ctgaaattat cttcactacc ttagcaagcc aacatctcat cacttatggc tctttatcct
      181 cattttcact gttcaattta ctcttggttg caaccttagg taatagttta ggtagcataa
      241 ccacttatgc gatagggcta ttactccctc gcccacagaa tactaccaat cgttattcac
      301 aatgggcatt agccaaaagt gaaaaatatg gcgtgttagt cttgcttttt agttggttac
      361 cgattgtagg cgatattttc tgtggcattg ccggctggct acggtttagc ctttggcaaa
      421 gcattctctt tattgtgatt gggaaattgt tacgttatct gtttttgctg gcaactctct
      481 attcggtgtt accgcatatt ttatagaaaa caaaagcggc tgttttgcaa aaaattttac
      541 aaaaacaacc gcttgtgctt tataagtttc ttaacgcttc aatacgtttt tctaacggag
      601 ggtggctcat aaacaactct ttaccacggc taccgttaat cataaaggca gcaagagagc
      661 cttccatttc ttgcggttcg tgaacacgtt gcaagcgttg taatgccgca atcattttct
      721 ctttaccgac taattgagca gagcctgcat ctgcacgaaa ttcacgttgg cgagagaacc
      781 acattgcaat cattgttgct aacacaccaa acaccatctg taacacaata tctactaccc
      841 agaacaccag cgtattggtg cttgaattgc cattttcgtc acgtgaactt gccgccattg
      901 tcgaaataat acgagctaag aaaatgacga aagtatttaa cacgccttgt aataaagtca
      961 ttgtaaccat atcgccattc gcaatgtgcg ccacttcgtg tgctactacc gcttcagctt
     1021 cgtctttagt cattgaattc agcaagccgg tgctgactgc aactaaagaa ttacttttcg
     1081 ttgctcctgt agcgaatgca tttacatcag ccgaatggta aatcgcaatg tccggcattg
     1141 ggatattcgc ttgctgagcc tgacgttgta cagtgttgaa taaccattgc tccgcttcgt
     1201 tacgaggctg tgtaatcacc tctgccccaa ccgaacgcaa tgccattgat ttcgacataa
     1261 atagcgaaat taaagaccca ctgaaaccga agactaacga aagcaccaaa ataccggcag
     1321 tgctttgccc ttgaatgccg gtcactttaa aaataaggtt taatacgatc cctaaaacaa
     1381 aggtaatcgc taagttagtt aataaaaata gaatgacacg ttttgccata atgttttcaa
     1441 tctccaaaaa tatagatgca atgattgcac gaataagata atgactttag ccttaatttc
     1501 aagtcattat ttacaattat tcccacaaat ttaactgttt attcactttt ttctcgggaa
     1561 agtgaacact tagaccgatt aatcgcacct ttcgttcctt tcttcgggta aaaatttgct
     1621 gtagcaactc gccaaatcgc tcatacgcaa agccatcggt ggttcgttca agcgtggttt
     1681 ggctaaaatc atcaaacttg agtttaatgc ctaacttttt aaactcagtt aatggcgtat
     1741 cgccccagtt tcgttgcaac cgaaaaacca gtttgtcgaa taaatctgcc acaatctttt
     1801 ccgcttgctc aagggttgaa atatcgtgca acagcgtatt ttccaccgcc agcgattttc
     1861 tttcacgata aggctctacc gctcgttcat caataccgtg gctaaaatcc caaagccgtt
     1921 gcccgaattt gccaaacgct cggtaaataa ccgctttttc tgcttgctga atatcaccac
     1981 aggtttcaaa gccaagctgt tttaattttt cattggttac tttccccaca cccggaattt
     2041 ttgcaagcgg tagatttttc acaaaatttt gcacatcatc aggcgtaatc acacattgtc
     2101 cgttaggttt gttttgatcg gaggtaattt ttgctaaaaa tttaagcgga gcaactcctg
     2161 ccgaggcagt taaatgcaat tcattgaaaa tatcattgcg gattgcttga gcaatccaag
     2221 tggcggagcc aaaatagcgt tcgcattcgg ttacatctaa ataggcttca tcaagcgaca
     2281 aggcttcaat cacatccgta tagcgatgaa aaatttcgtg aatttgagcg gaaaccgatt
     2341 tatacaacgc catattcacc ggcaataaaa ttaaattcgg gcatttcttc aacgcagttg
     2401 ccgttggcat tgcactgtgt aagccgaatt ttcgagcctc gtaattacag gttgtcagca
     2461 cacctcgttg attagcattg ccgcccaccg ccaccggctt accgaccaac gccgggtttt
     2521 cccgcatttc gaccgctgca taaaaacaat ccatatcaat atggataatt tttcgcttat
     2581 gtttagcttg aatcgacatt tgcaatattt tccccaaaaa cgaccgcttg caacacaaat
     2641 aactgtatat aaaaacagtt ttattttatg cccttattgt tagaatttca agtttaaaaa
     2701 tagcgataaa aaggataaaa aatgctctac ggtttagcca ttgtgctgat tccacttttt
     2761 ctcggttact taataaccct caaaaaccac cgccatatgg caatagtaaa cagagtggtc
     2821 agcctctgcc tttacttgat tttattagtg atggggattt ctctcggaca aattgataac
     2881 attctcaccg aactgccaca gattggcggt acggcgttta gtttagtggt gattttactc
     2941 ctttcaaaca ttatcggctt ggtgatttac gacaaattac aaccgatgaa aagagacaaa
     3001 gtcaatcaag atcaacttcc ctcccgcctg catttgttga ttgattcctt taaattaatc
     3061 ggcattacct tattaggcgg gatcatcggc tatttcacca aaggcgtggt ggatttccct
     3121 ctgcacgcca gcacctatgt gttagaagtg atgattttcg gggtggggat tcaactgcga
     3181 aacagcggta ttcccctgcg tgaagtgttc tttaacaagc gggggattta tacctcgatt
     3241 gtaatggtgg caagttccct gattggtggc gtgatttcgg cattcacctt agatttatcc
     3301 cttgctaaag gcttaacctt tgcctctgca ttcggttggt attccctttc aagcgtattg
     3361 gtaaacgatg cttggggccc gatttacggc agtattgcct tttttaacga catctcgcgt
     3421 gaaattttat gcctgttttt agtaccactg tttatgcgtc aatttccgtc caccgcagtc
     3481 ggcattggcg gagcgacttc attagattgt atgctcccta ttattcaaaa atcgggcggt
     3541 attcaaattg tgccgctggc aatcagcttc ggttttattg ttaatttagc cgctccattg
     3601 ttattagccg tttttattgg gctggaagga taaatcaccg cttgtttgct tttatttatc
     3661 catcttcgct gaattttccg ctataatcct taagttttcc ccgaaacttg ggatatttat
     3721 tttcaaaagg ataattttat gatgcgttct cactactgcg gtgcattaaa ccgctcacac
     3781 cttggacaaa cagttacctt aagcggttgg gttcatcgtg ttcgtaacct tggtcgtttt
     3841 atttttatgc aaattcgtga tcgtgaaggc attgtgcagg tgtttttcga tgagaaagat
     3901 gaagcacttt tcaagcaagc atcggcctta cgttctgagg cgtgcgtgca aattcaaggt
     3961 gaagtgattg cccgtgatga atcgcaaatc aataaagaga tggcaaccgg tgaaattgaa
     4021 gtgttagtaa aaaatttagt ggtgtataac aacgctgaag tattgccgtt agacttcaat
     4081 caaaacaata ccgaagaaca gcgtttaaaa taccgctatt tggatttacg ccgccctgaa
     4141 atggcagaaa agctcaaaac ccgtgctaaa atcaccagtt ttgtccgccg ttttatggac
     4201 gataacggtt tcttagacat tgaaaccccg atgctgacca aagctactcc tgaaggtgcg
     4261 agagattacc tcgtgccaag ccgtgtgcat aaaggcaaat tctatgctct gccacaatca
     4321 cctcagctat ttaaacagtt gctaatgatg tcgggcttcg accgttatta ccaaatcgtg
     4381 aaatgtttcc gtgatgaaga tttgcgtgcc gaccgccagc cggaatttac ccaaatagac
     4441 gtggaaacca gctttatgac tgccgaagaa gtgcgtgcat taatggaagc gatgatccac
     4501 ggcttatgga aagagacctt aggcgttgat ctcggtaaat tcccaatgat gacgtggaat
     4561 gaagcaatga cccgtttcgg ttcagacaaa ccggatttgc gtaacccact ggaaatggtt
     4621 gatgtggcag atattttaaa atcggttgat ttcaaagtat ttagcggtcc ggcgaatgat
     4681 ccgaaagggc gtgtagtggc acttcgtgtg ccaaacggtg cagctctaac ccgtaaaaat
     4741 attgatgact acacccaatt tgtcggcatt tatggggcaa aaggcttggc ttggttaaaa
     4801 gtgaatgata tgaacacagg tttagaaggc attcaaagcc cggttgcaaa attcttaaat
     4861 gaagaagtgc taaaagcctt agttaaacgc ttaaacttgc aaaaagacga cattgtattc
     4921 ttcggtgcgg ataactggca cgttgcgact aacgccatcg gtgcgttacg cttaaaagtg
     4981 gggaacgatt taggcttaac cgataccaca gcgtggaaac cgttatgggt gattgatttc
     5041 ccaatgtttg aacgtgatga tgaaggcaac ttatcggcaa tgcaccaccc gttcacttca
     5101 ccgaaagaat tatcgccgga agaattagtg caagatccgg aaaatgcggt ggcaaacgct
     5161 tacgatatgg taattaacgg ctacgaagtg ggcggtggct cggtacgtat tttcagccag
     5221 cagatgcaac aaaccgtgtt cagcatttta ggcattaacg aagaagagca aaaagagaaa
     5281 ttcggtttct tattagatgc gttaaaattc ggtactccgc cacacgcagg cttagccttc
     5341 ggtttagacc gcttaacgat gttgattaca ggaactgata acattcgtga tgtcatcgct
     5401 ttcccgaaaa ccaccgctgc agcgtgttta atgacagaag caccaagcta tgcgaatccg
     5461 aaagcgttgg aagagttagc aatccgtaca attccacaag agtaatcggt aggggcgaaa
     5521 catttttcgc cctttttatt taacaagcgg tcgaaaaagt gaaaaac
//
LOCUS       DANLXB010000156         5498 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLXB010000156 DANLXB010000000
VERSION     DANLXB010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..208
                     /locus_tag="PXD41_002065"
     CDS             <1..208
                     /locus_tag="PXD41_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289567.1"
                     /translation="APANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRA
                     WLFWLVVRAFGWRFYKNKEIKIEK"
     gene            369..515
                     /locus_tag="PXD41_002066"
     CDS             369..515
                     /locus_tag="PXD41_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289568.1"
                     /translation="MLAEKPKKRWRFWYAFVNGLFFDKKHCYAAYKAEVYRKQYPPEF
                     TEIT"
     gene            622..1803
                     /locus_tag="PXD41_002067"
     CDS             622..1803
                     /locus_tag="PXD41_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL6289569.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            1812..2318
                     /locus_tag="PXD41_002068"
     CDS             1812..2318
                     /locus_tag="PXD41_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6289570.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            2397..2711
                     /locus_tag="PXD41_002069"
     CDS             2397..2711
                     /locus_tag="PXD41_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6289571.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            2735..2851
                     /locus_tag="PXD41_002070"
     CDS             2735..2851
                     /locus_tag="PXD41_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6289572.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            2915..3262
                     /locus_tag="PXD41_002071"
     CDS             2915..3262
                     /locus_tag="PXD41_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289573.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            3264..3701
                     /locus_tag="PXD41_002072"
     CDS             3264..3701
                     /locus_tag="PXD41_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289574.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            3701..4939
                     /locus_tag="PXD41_002073"
     CDS             3701..4939
                     /locus_tag="PXD41_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL6289575.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(5122..>5498)
                     /locus_tag="PXD41_002074"
     CDS             complement(5122..>5498)
                     /locus_tag="PXD41_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289576.1"
                     /translation="DEAMHIIANNIIRKKTAVANAILALNEVDSRKSSGVQLCDLLLG
                     AILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFNIWYFYDPTKGPRIVR
                     TRETKLKYPLLKKKEQTFQPAR"
BASE COUNT         1655 a         1157 c         1256 g         1430 t
ORIGIN      
        1 cgcaccagcc aatatcaaca gttgctgtca tcaacatgac cgagactacg gcattcgtgg
       61 cacagtaaca cgagcagatg ctgataaacg cttacgtgag tgtatgatta aaaatggcaa
      121 tccaattagg gcttggttat tttggctagt tgtgagagct tttggttggc gtttttataa
      181 aaataaggag attaagattg agaaataaag ataatactgc aagcaagcaa gcaagcaagc
      241 aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc
      301 aagcaaagtg tagcgcaatt taaacaagct ccgctacctt ttccagcagc cgttgttacc
      361 gtggtgcaat gcttgcggaa aagccgaaaa agcgttggcg tttttggtat gcgtttgtga
      421 atggcttgtt ttttgataaa aagcattgct atgcagccta taaagcggag gtgtatcgaa
      481 aacagtatcc accggagttt accgaaatca cttaatcctg ttaaacccca tttcacagcc
      541 cgaaccgctc gcaacccgag cggttatttt ttaaagttta ccccaacatt caaccctaac
      601 ctttcccaat taaggaatac tatgtcaatt ttagatacct atctacacgg tgttgaggtg
      661 gttgaggtca atgcaggtgg tgtcaccatt tccaccgctg ctacttcggt tatcggagta
      721 gtttgcaccg gagaccaagc cgatgccgag acttttccgc tgaatacgcc cgttttaatt
      781 actaacccgt taaattacct tgaaaaagca ggtagcaccg gcacgttacg ccgcacactt
      841 aattcgattg gctcaatcgt taaaacgcca acggtgatcg tgcgagttgc cgagtcggac
      901 gatagcgaca ccttaactgc aaatattgtc ggcacgcagg aaaacggcaa atttaccggt
      961 attaaggcgt tattaaccgc tcaatcaacc gtgtttgtta agccgaaatt gctttgtgta
     1021 ccacagcacg ataatcaagc cgttgcgacc gaactattaa gcgtggctaa aaagctgaat
     1081 gcgtttgcgt ttatttcaga caacggtgca accaccaaag aacaggcata tacctatcgc
     1141 cagaatttct ctcagcgtga aggaatgatg atcttcggtg actggaaatc ttataacact
     1201 gataaaaaag cctatgatac cgattatgca gtggcccgag cttgtgcgtt gcaagcctat
     1261 atcgacaaaa ctgtcggctg gcataaaaac atctcaaacg tagagctaga cggtgtaacc
     1321 ggtatcacta aagcggtaga gtttgatatt aacgagagct caaccgaggc aaactacctg
     1381 aacgaaaaag gcattaccat ttgcttaaac cataacggtt tccgctattg gggttcccgc
     1441 actcttgcca ccgatacccg ctgggcgttt cagcagtcgg tgcggacggc tcaaatcatt
     1501 aaagagacaa tcggagcagg cttagcttgg gcggtggata tgccactcac accgttgcgt
     1561 gtgaaaacaa tgctagaggc gattaacaac aagctacgct cttgggcatc gggtgatgac
     1621 cctcgcattt taggtgctcg tgtgtgggta gctgaagaga tcaccgcaga tattatcaaa
     1681 tcaggcaaat ttgttattaa atacgattac cattggattc cgtccctcga aagcctaggc
     1741 ttagagcaac gggtcaatga tgaatatgta gtggatttag tcaatacact taaagcgtta
     1801 tagaggtaaa aatgggatta ccggcaaaac ttaagaattt taatttttcg gtggacggca
     1861 caagctattt gggcgaaacc accgaagtca cacagccgaa actggctatg caacttgaag
     1921 actaccgagc aggcggaatg attgcccctg tgggtgtcaa tatgggttta gagaaactgg
     1981 agcttgagtt caaaatcggc ggacacgaag aggatttgct caagctattt ggtggctcaa
     2041 tcagtggtaa tgcgttccgt ttcaacggtg cgtaccagca cgacgatgac gattcagtcg
     2101 atgcggtaga gttagtctgc cgtgggcgaa tcgctgaaat tgacgaaggc tcaagcaaag
     2161 ccggtgatga caccgagcat agctataaag cctcgctaac ctattacaaa aaaacggtga
     2221 acggtgtcga tattatcgaa atcgacaccc tcaaccaaat ttacattgtc gatggcaaag
     2281 accgcttagc ggaaattcgt aaggcaatgg gtttatagat tttcccctaa attttcccaa
     2341 agccccttcc ccttttttca aggggctttt aatgataaat aattaaggat taaacaatga
     2401 aaaaagtaac attaaaacaa ggcattttgc gtggtgaaaa acgtattacc gagattgagg
     2461 tgcgtaagcc attaaccaaa caactgcgtg gcacaaatct tacctcatta atgcagttaa
     2521 gcgttgatga gtggtgtatt gtactgccac gcattaccac gccaaaatta gacaaagccg
     2581 attttgccac aatgtcggca gcggatttgc taaaactctc cggcaaagcc ttagatttaa
     2641 tgagcgaaga cttcgatgag gcagacgaag aggacagcga agaacaggga aagggcgaga
     2701 ttttagccta attccacagt ttgttgatga cgctattgct gatattgcta ccgtgtttca
     2761 ttggacaccc aacacctttg atgaaatgac gattgtcgag ctagggcaat ggcgagaaaa
     2821 ggcccgctta cgaaatgggg tggaaagtta aaacaagcgg tcgtttttcg caaaaaattt
     2881 gcaaaactcg accgcttgct ataaggattt taaaatggaa attaaaacag ttacattcag
     2941 taaagtgatt acagcattca tttttcatat cattacgtta tttgttttta ctcaacttaa
     3001 tgagcaagct caagctacct ttatgttctt ttggtggttc ttcatttctc tgcgattcat
     3061 ccttgtagtt ggaataatgt gtgttggtat tgaagaactt aaaattcagg aataccgaca
     3121 aacaaaagct tatgcttgtt ttagtttcat atccaatttt gcgttatgct tgcagtttgt
     3181 ttactttgag catcttattg cggcaatttt atttttgatt tcttacatca tatatcatag
     3241 ccaaactgta acgattaaat aatatgctcc aacaattcgc aatgatgtcg ctaggctatt
     3301 ttgtgtttat gcgattgaca atcccttatc aagacaccag ccgagaaatg aactggtcgc
     3361 acgttcaaaa tgatgtggtt ggggcaatgc caaaaagcca atttaccggc aaggcagggg
     3421 agacaatgga gatttcagcc gagctacgcc ctgaaattac cgggggcaaa atgtcaatcc
     3481 ttgcccttga gatgatggca gagcaaggct cggcttatcc gttgattagt ggttcaacct
     3541 ttatggtgct aggctggttt gtgattgatc gaatcagcga gcaggaaacc accttttttg
     3601 cagacggcac gccccgggca attagctttt cgatgtcgct taaacgggtt gatgatagtc
     3661 tgctcgccaa tattattgat gaggtcgcag ggtttattta atggattttt taacagagct
     3721 aaccaatcat aaccaccgca caccggctgt ttcggtgacg gttcgcccaa agccaagcaa
     3781 agataatgag ggcgaaaaag ccaaagatat ttccaccctg atcacgcacc gcttaattca
     3841 actcacctta accgacaacc gaggctttga ggcagaccag ctggatttag agctggacga
     3901 cactgatggc ttactcgctt tgccaagtcg aggagcgatt ttatcggtcg ggttaggctg
     3961 gcaaaacagc cccctgacct acaagggcga atacacggtg gacgagctaa cccacgatgg
     4021 cccacctgat aaagtcacga ttcgggcaag aagtgctgat ttgcgaggca cgctgaccaa
     4081 tcgccacgag cggagctttc accgcaccac cattggtaaa attgtgaaac agatcgccga
     4141 agagaacaaa ctcaagccga tggtgggcaa ggagtttgaa aacgaagagg tgaaacacat
     4201 tgaccaaaca aacgaaagct ctattaatct cttgcaacgc ctcgcagaac aatttgatgc
     4261 cattgctacc gtgaaaaacg gcaatttgat tttcattaaa gccggaaacg ccacaaccgc
     4321 aagcggtaaa ctgttacccc tgtttcgcat tacccgcagt tcgggggatt cccatagctt
     4381 ttcgattgcc gaaggggata actacaaagc ggttaaagcc tattggcaca acacgcaaac
     4441 cggcaagcga ggcgaggtga cgtgggacga aaacagccaa gttaaaaaag tgactaagcc
     4501 cacaatgcgg aaaaagacta aagtaaaacg tggggcagac ggcaagccga taaaaggcaa
     4561 agacggcaag agcattaaag agaccgtctt tgtaaaaggc aaaggcaggc aagttaatgc
     4621 agtggtgcaa agtaaaccga ttgaaagtga tagcgaggca attaaaaccc taccccatac
     4681 ttacgctacc gcacaatcag cgattaatgc ttgtaaacgg aattttgaaa aactacaacg
     4741 aggtgtggca acttttagcc taactcttgc cgagggcaat gcggagctta tccccgaatt
     4801 accggttcag gtttcaggct ttaaggcgga gattgatagc aacgagtgga taatttcgca
     4861 ggttacgcac agtttaaata aaggtggtgg gtttacgaca gcgttagaga tggagttgaa
     4921 gccgaagtct gaagactaac gctattttta taaaatcact ataaaaaagc cttgcatctc
     4981 tgatcttgaa caagtaatat taatcaaagt tacagattta tttacataaa acacaaagaa
     5041 tcataggggc ggctactttg tgtgattccg cccagtgagg aaattgggcg ttgttttaca
     5101 catataagtc cttgaggaca ctcaccgtgc aggctggaag gtctgctctt tcttttttaa
     5161 tagtgggtat ttaagttttg tttctctcgt tcttactatt ctaggtcctt ttgtagggtc
     5221 gtaaaaatac caaatattaa atttcttttc ctcctgtaaa gtatcataag ttaatttatc
     5281 ccaacctagg tgcaaagcaa tccattttgt tagttctttt ttacgttccg atgtaatatc
     5341 attttgatag ctacttaata ttgctcctaa taataaatcg catagttgaa cgccagatga
     5401 tttacgagaa tctacttcgt ttaatgctag aatagcattt gctacggcag tctttttacg
     5461 aattatatta ttagcgataa tgtgcattgc ctcatcag
//
LOCUS       DANLXB010000157         5494 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLXB010000157 DANLXB010000000
VERSION     DANLXB010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(21..1160)
                     /gene="dnaJ"
                     /locus_tag="PXD41_002075"
     CDS             complement(21..1160)
                     /gene="dnaJ"
                     /locus_tag="PXD41_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL6289577.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
     gene            complement(1383..1685)
                     /locus_tag="PXD41_002076"
     CDS             complement(1383..1685)
                     /locus_tag="PXD41_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289578.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            complement(1827..3725)
                     /gene="dnaK"
                     /locus_tag="PXD41_002077"
     CDS             complement(1827..3725)
                     /gene="dnaK"
                     /locus_tag="PXD41_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL6289579.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3984..4322
                     /locus_tag="PXD41_002078"
     CDS             3984..4322
                     /locus_tag="PXD41_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6289580.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            4493..5236
                     /locus_tag="PXD41_002079"
     CDS             4493..5236
                     /locus_tag="PXD41_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289581.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
     gene            5244..5474
                     /locus_tag="PXD41_002080"
     CDS             5244..5474
                     /locus_tag="PXD41_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289582.1"
                     /translation="MALHRCPECRKRISDSLEHCIHCGFSFKEADLAIYRQKLEQRRL
                     HNQEINRKSVKLQLIWLVIFIAVIALASWITN"
BASE COUNT         1425 a         1198 c         1083 g         1788 t
ORIGIN      
        1 aatatgtact ttttatgatt ttatttgcct aagttatcaa agaatttctt cacaccatca
       61 aagaaacctt cgtgtttcgg acgatgttta ccttgtcctt ctaaactctc ttcaaattgt
      121 cgtaatagtg ctttctgttc ttcggttaaa ttcacaggcg tttcgaccac cactttgcag
      181 attaaatccc ctgcgtagcc accacgaggg cttgttaccc ctttgcctcg tacacggaat
      241 agtttaccgg tttgagtttc tgccggaatt ttgagtttta atttgccgtc taaagttggc
      301 acttcaattt caccgcctaa agctgcaagg gtaaagctaa tcggcacttc acagtataaa
      361 ttcgaaccgt cacgctcaaa aatatcgtgt tctttaacgt gaatcaccac atataaatcg
      421 cctgccggtg cgccattttc gcctgcagct ccctctctcg ataagcgaag ttgattaccg
      481 gtatccacac ctgccggaat ggtaacagag aggtttttcg ctttctgtac acgtccatcg
      541 ccgtggcaag aacggcacgg tttttcaatg cgtttacctg taccgtgaca acttggacaa
      601 actgcctcag tcacaaagaa accttgctga cggcgaactc tgccggagcc gtgacaatgc
      661 gaacaggttt ccactttgct ccctgcttcc gcccctgtac catgacaagt atcacattca
      721 gctaaggttt gaatgcgaat atctttttta cagcctttca cagcttcttc aagggtgatc
      781 tcgatgtcgt aacgtaaatc atcgccacgt accacacgtt ggcgacgtcc accgccacca
      841 aagccaccgc caaacatttc gctgaagatg tcttcaaaac caccgaaacc accgccgcca
      901 aagccaccga atccgcctgc accggcaccg ccttgttcaa aggcggcgtg accgtattgg
      961 tcgtacatcg cttttttctc gctgtcggtc agcacgtcat aggcttcggt aatctcttta
     1021 aatttctctt ccgactcttt actgccttgg tttttatccg ggtgatgctt tgccgccaaa
     1081 cgtttatatg ctcgtttgat gtctttctcg cttgcccctt tagacagtcc aaggacttcg
     1141 taataatctt tctttgccat tgttgttccg tttgtaaatt tttctgtgtt tttgaccgct
     1201 tgccctcgcc ccttgtggga gaggggtagg atggttaatt ccccctctct ctgaaaaata
     1261 tttctgaacg aaatattttt cggtctctct cccacaaggg gagagagttt tatataatta
     1321 aatgggatct agccaagatg gctcaagatg acacaagcgt ggacgcttgc gctatcaaaa
     1381 gcctaacaat gcggattcac cgcaatataa atttctactt tgccgtctgc taaatgtttt
     1441 tcaaaatctt tggtgtaagc tcgtttgagc aaaccttgtt tggaacggtt ttcaatcaca
     1501 gaccaagtgt ctgccaaaag agcttcggta gttggaattt gctcaaacca aacaaaatcg
     1561 tccattaaaa tcgcggtatt gctgttttcc gtttctgtgg caatgaccgt ttcgccactt
     1621 ttatgatcgt atattttata aaacggtggc tgtacatttt ccgttgtagg gtagagtttt
     1681 agcatttgta aaatttcctt tgaaaagcac cgcttgcaca gccccaaagg ggctgaatta
     1741 tgtgtaacct agcacggctc gtgctaggtg gtatatatct acacaaaagg ggcgaaagat
     1801 atttcgcccc tacaagttac gcaagattat ttattatctt tcacttcttc aaattccgca
     1861 tcgaccacgc cgtcatcttt ttgagattgt tgtggttgct cgccgccttg tgcttttgct
     1921 tgtgctgctt gcattaacgg ttctgaagct ttgattaacg cttcgatttt cgcttcgatc
     1981 tcggctttat cttcgccttt agctgcggtt tctaactcag aaatagccgc ttcgatcttc
     2041 gctttatcgt ctgcgtttaa cgcatcgcct gcttcggtaa tttgcttacg ggttgcgtga
     2101 gcaataccgt ctgcttggtt acgagcttga actaactctt caaatttttt gtctgcttcc
     2161 gcattcgctt ctgcatcacg caccatttgt tcaacttcag catcgcttaa gcctgaagat
     2221 gcttgaattt tgatttgttg ctctttgcca gtgtttttat cttttgcaga gacattgata
     2281 ataccgttag catcaatatc aaaggttact tcaatttgtg gcataccgcg tggagcaggg
     2341 ttaatacctt caaggttgaa ttgacctaaa gatttattat ccgctgcacg tttacgctca
     2401 ccttgtaaca cgtggatagt taccgcagat tggttatctt ccgctgttga gaacacttgt
     2461 gatttcttgg ttggaatcgt agtgtttttc tcaattaagg tagtcattac accacccatt
     2521 gtttcgatac caagtgaaag cggagtaacg tctaataaca atacgtctgt taccgaacca
     2581 cttaacacac cgccttgaac cgccgcaccg attgccacag cttcgtccgg gttaacgtct
     2641 ttacgcggtt ctttgccaaa gaagtctgcc acttttttct gtactaacgg catacgggtt
     2701 tgaccaccga ctaaaatcac atcgttgatg tcgcctactg ataaaccggc atcagctaaa
     2761 gcggttttta acggctctaa cgaacggttt actaaatctt caactaaaga ttccaatttc
     2821 gcacgggtta ctttaatgtt taagtgtttc gggccggttg catctgccgt gatgtatgga
     2881 aggttcactt cagtttcttg tgcagaagaa agttcgattt tcgctttttc cgctgcttct
     2941 ttcacacgtt gcattgccat tgggtcgttg cgtaaatcaa cgccttgttc tttttggaat
     3001 tcttccacta agtagttgat tacacggtta tcgaagtctt caccacctag gtgagtatcg
     3061 ccgttggttg cacgcacttc aaaagtttgc tcgccgtcaa agttatcaat ttcgataatc
     3121 gaaatatcga atgtaccacc acctaagtcg taaacagcaa tcgtttggtt ctctttctta
     3181 gaatctaaac cataagcaag cgctgccgct gttggttcgt tgatgatacg ttttacatct
     3241 aaacctgcaa tacgaccggc atctttagtt gcctgacgtt gtgcatcgtt aaagtatgca
     3301 ggcacagtaa taaccgcttc ggttaccggt tcgcccaaga aatcttctgc ggttttcttc
     3361 atttttttca agatttcagc agagatttgc ggcggtgcta atttatcgcc ttttacggtt
     3421 acccacgcat cgccgttatc tgctttgctg atttcaaacg gcataatttc aatatcacgt
     3481 tgcacttcag catcagtaaa acgacggccg attaaacgct tgattgcaaa taaagtattt
     3541 ttcgggttag taattgcctg acgttttgcc ggctgaccaa ctaaggtttc tttatcggtg
     3601 taagcgatga tagatggcgt tgttcttgcc ccttccgcat tttcaattac acgaggtttg
     3661 tcgccgtcca ttaccgcaac acaagaattt gttgtaccta agtcaatacc aatgatttta
     3721 cccattttta tgattcctat aataataaat tcagtttgaa taagaaacgg gattgcattt
     3781 cccgttcaga cgaaatcata aatagggacg aaaatgcact gttcaagggc aaaaataaaa
     3841 aaattgcaaa atttttggaa aaagtaaccg cttgtatgtg ggggagattt ggcagaatat
     3901 ttcacggaga aaatacctcc taccttgcat acccctcaat agctttttat acttacggca
     3961 actcaaacag agaaggatat aatatgaaac tgattactac cattatccaa ccttcaaaat
     4021 tagaccaagt gcaagatgca ctttcagaaa tcggtattca aggaatgact attaccgaag
     4081 taaaaggctt tggacgccaa tatgggcata ccgaacaaga gcttagccaa atgagccgca
     4141 ttgactttcg tcctaaaatt aaggtggaga tattggtttc taattaccaa accgatgaag
     4201 tgatcgatgc cattctcaat gcatcctatt ctgggcaagt gggtgatggc aaaatttatg
     4261 tagcgaatat tgaacaagtt atccgcaccc gtaccggcga aactgacgat gaagcagtct
     4321 agccattgct agcagagaag ctttttatta tcgtgtttta gagttatatt ttcaacctta
     4381 ctaaagcaaa ttttctaatt tggtgtgaat taaatgtttg ttttttgtgt aatacgggtt
     4441 attatagtaa tcaaaaatag ttaggtttta atggaaatag acattctttg ttatgctaaa
     4501 taaacacatt aataaaatta tcaattcttc attttctctt gcatttttta cattaactag
     4561 ttttgctacc gcttactgtt acggttgggg acaagccata tttcatggct acccttggtg
     4621 gcatgttgaa atcggcaatg ccagtatggc aagaagtttg gcttatgtat tcggtacttc
     4681 cgtcatctta ttcttgtgtt atgcactagg ttatagttta ctaaataaag tttttcagct
     4741 gcattatttc cgaaatctag gttggttaag ggtgattgtg ttggtttctg tgtttacagt
     4801 gcctgttatt cttacttttt acttatttac cgggatagtg cccatttata tctcttttat
     4861 ctatattttt gtaagtggtg tgagcgtatt cttcttccgc aagagatgga ataataccaa
     4921 gtttgatctg gactttagaa agatgctatt aggaggaagt tttgccctgt ttaacatctt
     4981 tatttttctc tatttcagtt tgctctcatt gcatattggt tatttgcgtg ccggactaag
     5041 aactacctat gattacatcg aaatagagaa tcaaaaatac tacatattat ccaccaacag
     5101 tgataacggc tacattatgg gaacaaaaat aagaggtaat caatctttct tgtttttcaa
     5161 tcgtgatact catcaatact accatgttca tattgaacaa tgtacggata gccgattatg
     5221 caaagtaata gtttgaggta attatggcat tacaccgttg tccggagtgt cgaaagcgta
     5281 ttagcgacag tttagaacat tgcatacatt gtggcttctc gtttaaagaa gccgatttag
     5341 cgatatatcg gcaaaagtta gaacagcgcc gattacacaa ccaggagatc aaccgcaaaa
     5401 gcgtaaaatt acaacttatt tggttagtta tttttattgc ggtaattgct ctcgcaagtt
     5461 ggataaccaa ttgaaataaa agcccggtat ttac
//
LOCUS       DANLXB010000158         5444 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLXB010000158 DANLXB010000000
VERSION     DANLXB010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5444
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            44..562
                     /gene="hutZ"
                     /locus_tag="PXD41_002081"
     CDS             44..562
                     /gene="hutZ"
                     /locus_tag="PXD41_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL6289583.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            712..3324
                     /gene="pepN"
                     /locus_tag="PXD41_002082"
     CDS             712..3324
                     /gene="pepN"
                     /locus_tag="PXD41_002082"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL6289584.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(3384..3656)
                     /locus_tag="PXD41_002083"
     CDS             complement(3384..3656)
                     /locus_tag="PXD41_002083"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL6289585.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(3710..5344)
                     /locus_tag="PXD41_002084"
     CDS             complement(3710..5344)
                     /locus_tag="PXD41_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL6289586.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         1583 a         1168 c         1086 g         1607 t
ORIGIN      
        1 tttatagtaa tctaaaaaaa cactatttaa attgaggtat tttatgacaa ccaaccgtca
       61 agaggtctta caaaaccgtt taggtccaga aattgaagaa ttaaaacaac aaatcaaaac
      121 tataatgctt gcaaccatag ataaagatgg tgtaccgaat gtgagctatg ccccttttgt
      181 aattaataac ggcgaatatc aagtcttaat cactactatt gcccgtcacg ctcgtaattt
      241 acaagaggtg ccaaaagtct ctttaatgct aattgaggat gaaagtaaga gccgtcaaat
      301 ttttgcccgt cgtcgcttaa cctttgacgc aacagtgcga atgattgaac gtactgatga
      361 ggaatggaat aatagcattg cagcacttaa agctcgtcac ggcgatttag ttgatgaact
      421 gtcaaatatg caagatttca agctctttag ctttaagcca acggcaggct tatttgtaaa
      481 aggatttggt aaagcctttg atgttggtgt tgatgactta attaatgtcg ttcatttaga
      541 ccaaggccac caaactgcct aattgcgaaa taaactcacg gctataaata atcctattta
      601 tagccgtttt tattgcgaca agcggtcaaa ttttttggaa aatttaccgc tattttagta
      661 caataacgac actattctat gagctaaacg caactaaaaa aaggaaatcc tatgcaacct
      721 aaagcgaaac tcagaaaaga ttatcgagct cccgatttca ctattactga tatttatctt
      781 gacttccaac ttgacccaga tcgcactttt gtcacctcaa aactaactgt cgtgcgtaaa
      841 aatcctgagg cgacaacact tcgtttagac ggtcatagtt tcgatttcct ttcgcttaaa
      901 tataacggcg agccgttttc cgcctttcaa aaagatgatg aatctttaac cttaaattta
      961 gccgatgtgc ctgccgagcg gttcgagctt gaaattgaaa ccgcattaaa tccggcacaa
     1021 aacacctcgt tacaaggttt gtataaatcg ggcgacgggt tttgcaccca gtgtgaggct
     1081 gaaggtttcc gccagattac ctatatgctc gaccgccctg atgtacttgc aaaatatacg
     1141 acaaaaatca ccgctagtaa gagcaaatac ccgtatctgc tttctaacgg caaccacatt
     1201 gcccaaggcg acttgcacga tggcagacac tgggtggaat ggcaagatcc gttctttaaa
     1261 ccaagctatt tatttgcctt ggttgcgggg gattttgact tactccaaga taaattcatc
     1321 accaaaagcg gacgtgaagt cacgcttgaa atttatgtcg atcgtggaaa tttagaccgt
     1381 gcaccttggg cgatggagag cttaaaacgt tcaatgaaat gggatgaaga gcgtttcggt
     1441 ttggaatacg atttagatat ttatatgatt gttgccgttg atttcttcaa tatgggagca
     1501 atggaaaaca aagggttaaa tattttcaat tccaaatttg tattggcaaa accggaaacc
     1561 gcaaccgata cggattattt agatattgaa gcggtgattg cccacgaata cttccataat
     1621 tggacgggca accgcattac ctgccgtgat tggttccaac taagcttaaa agagggctta
     1681 accgtcttcc gtgatcagga atttacctcc gatttatggt ctcgttcggc aaaacggatt
     1741 gaagatgtgc gtttactgcg taccgtacaa tttgccgaag atgccagccc gatggctcac
     1801 ccgattcgcc cggaaaaagt gattgaaatg aataatttct acaccgtgac tgtgtatgaa
     1861 aaaggggcgg aaattattcg tatgattcac accctgttag gcgaagaaaa attccagcaa
     1921 ggtatgcaac tttatgtggc aagacacgat ggttctgcgg caacttgtga agatttcgtt
     1981 aaagcaatgg aagatgcttc aggcgttaat cttgaacaat tccgccgttg gtatagccaa
     2041 tccggcacgc ctgagctcac catttccgat gaatatgatg aaacccgcaa ggcataccgc
     2101 ttgcatattt cacaaatgac accggcaacc cacgatcaga tggataaact caatctgcat
     2161 attccgctta aagtagcgtt atatggtgaa caggacggta aacgcattcc gttacaatat
     2221 gaattattga ccgtaagcga tgtgttagat gtaaccgcag aacaccaaac ctttgagttt
     2281 cataatgtaa cacaacgccc ggtgcctgca ttactgtgtg atttctctgc accggtacgg
     2341 ttagattaca actataccac cgagcagctt ttaaccttac tcaaacacgc tgaaaatgat
     2401 tttgtacgct gggatgcagc tcaaatgctc tataccaatg aactgcgtga aaatttaagc
     2461 cgttatcagc aacatcaacc actcagcttc tcagaagggt tggtgaatgc cctaacgttc
     2521 gtgttggata actcagcaag cctgccggaa ctaactgcat taaccctcac attgccaaaa
     2581 gaaaccgagt ttgcagaatc gttcaaaacc attgacccac aaggtattgc ggttgtgcgt
     2641 gaatttatgc agcattccat tgctcacgcc ttgcaagata agttattagc ggtatatcac
     2701 caaaaccaat gcggggaata tcaagtcgtg gctgaagata ttgctaaacg agccttgcgt
     2761 aatgcttgct taagctattt agcctttact gatttaggca acgcgttggt gcataagcat
     2821 tacaataatg ccgataatat gactgatacg cttgctgcat tacaagccgc aaccaaagcc
     2881 cagctaagtt gccgtgatgc attattagcc gattttgagc aaaaatggaa acatgatggt
     2941 ttagtgatgg ataaatggtt tatgctacaa gccacccgac cggacgacga tgtgttatcc
     3001 atcgtgcaaa atttaatgga acacccaagt tttaacttta ataacccgaa ccgtttacgt
     3061 tcattagtag gtgcattctg cggtcaaaac ccgaaagcct tccacgccat tgacggttca
     3121 ggctatcgtt tcttggtaga tacgctgatt aaacttaacg aaagtaaccc acaagttgct
     3181 gctcgactta ttgagccgtt aattaaactc tcacgctacg ataaccaacg ccaaaccttg
     3241 atgcgtcgtg gtctagaacg cctgcgtgag ctggataatt tagcacgaga tctgtttgag
     3301 aaaattgaaa aagcgttaga ttaaaccaag caatacaagc ggtgtcgttt gcaaattttt
     3361 ttacaaatga caccgcttgt tagttaatac cttacctcaa accttttaaa cctttctgag
     3421 ccaagataat cgctcacaat tacccgttcc acctttgcag caggtgagcc ttgttgtaac
     3481 caattttcca gttgagcgat tgtctgttca tccgcttcag ctaccacttc taccgagccg
     3541 tcatcacgat ttctgacata gccttttatg cctaatcgat tcgcttcctg caaggtaaaa
     3601 aaccgaaaag cgacaccttg aacccgtccg taaaccgaga ataattttgc gaccattctt
     3661 cccccataaa aataggctgc ttatttttca ataaacagcc cataatgtct tatttcacga
     3721 tgtagaggtt acgcagtaaa atatcatctt gcggatcttt accctcatag cctttcacgt
     3781 aaggtttcac caaacgtggg tttacatagt tataaatcgg aataatcgca taatctttgg
     3841 ctaactgctc ctctgctttt gcataagcag ctgcacgacc agctgcgtct gtcgctttgt
     3901 aagattctgc taccgcatca tcataagctt ggctcttata aaacgcagta ttgttgctgg
     3961 agttcgataa gaaatagttc acaaaggtgg ttgcttggtt atagtctgcc gaccaacctg
     4021 cacgagaaac atcataattt gcattgcggc gggtatctaa gaatgttttc cactcttggt
     4081 tttctaattt cacatcaaca atgccgtctg tgccttgttt ccataatgat gaaactgcaa
     4141 tcgcaatttt cttgtggttg tcgttggtat tataaagaat agtaaatttt aacgggttcg
     4201 ctttactgta accggcttct tccaataatt tcaacgcttt ggcttttcta tctgccattg
     4261 aatctttgga ataagcaggt tgctggattt tttcaccctc gtgaatataa ggcggtgtaa
     4321 atacataagt tggtgtttga ccttgtccta gcactttatc ggtaataatg gtgcgatcta
     4381 aagctaagtt taacgcctca cgcactttca cattatcaaa cggtgctcgt ttatggttaa
     4441 tttcatagta ataagtagaa agggttcttg ccgtaaacac ttcgtttgga atctcttttt
     4501 tcaaggttgc aaactgctcc ggtggaagag catagttggt catatccaaa tcaccggcac
     4561 ggtaacgtga aacatcagtt gcggcattag caatggctaa gaaagtcgct ttattaatca
     4621 cggtttcttt atcattccaa taatttttat tacgctcaaa cacgattttt tcattaataa
     4681 cgtgatcggc taaggtataa gccccgtttc caaccagatt gcctttttgc acccacgcat
     4741 cgccgtgttt ctcaacggtt gctttgtgta caggtaataa agaagagtgt gttgccagct
     4801 caactgcata cgggacaggt tggcttaact gcacctggaa agtatgatca tcaatcgctt
     4861 taactgctag ttcctccggt tttttcttgc cgtcaataat atcttgagca ttttctacat
     4921 tgagataagt taaatagctt gaataaggtg aagccgtaag tggattaacc aaacgctgcc
     4981 aagcaaatac gaaatcgtga gcagttacgg catcaccgtt tgaccattta gcgtcttggc
     5041 gtaatttgaa cgtccacgtt ttgtaatccg gtgtattttc ccaactttct gccacacccg
     5101 gctgaatatt gccgtcagaa tctttcgtta ccaatccttc aaataactga taagcaactt
     5161 gcgattccgg cacgccctca attttatgtg gatcaaaact tgatggctca aaaccattat
     5221 taatcgtaat ttcttgtttt tctgcaagcg ttgttccttc aggcactttg gctgcaaaca
     5281 catttgccga taagcctaac actaatgagg ttgttaataa ggaaagcgag aattttgact
     5341 gcatatttga tctccattga tgaatattgg cttgcaacca gccgatttgt tctaattaat
     5401 ttttttaagt ctaggcatta ttattttgat tgcaaggaat tttt
//
LOCUS       DANLXB010000159         5434 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLXB010000159 DANLXB010000000
VERSION     DANLXB010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5434
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..207
                     /gene="zapB"
                     /locus_tag="PXD41_002085"
     CDS             <1..207
                     /gene="zapB"
                     /locus_tag="PXD41_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL6289587.1"
                     /translation="VLDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLRSEY
                     EQLKVEQQNFQDRLRSLLGQIDNV"
     gene            263..844
                     /locus_tag="PXD41_002086"
     CDS             263..844
                     /locus_tag="PXD41_002086"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL6289588.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(935..2053)
                     /locus_tag="PXD41_002087"
     CDS             complement(935..2053)
                     /locus_tag="PXD41_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL6289589.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2143..3591)
                     /locus_tag="PXD41_002088"
     CDS             complement(2143..3591)
                     /locus_tag="PXD41_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6289590.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3738..>5434)
                     /locus_tag="PXD41_002089"
     CDS             complement(3738..>5434)
                     /locus_tag="PXD41_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL6289591.1"
                     /translation="LLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSATV
                     IGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYTT
                     IPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGAA
                     ITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAEG
                     VKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKAG
                     QKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFIA
                     ALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIFG
                     PLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCIV
                     WVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPLA
                     VASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
BASE COUNT         1487 a         1239 c         1244 g         1464 t
ORIGIN      
        1 gttttagacc aattagaaga aaaaattaaa caagctgttg aaactattca attacttcaa
       61 ttagaagttg aagaattaaa aggtaaaaac gatgcagcga aacaagaaaa cgacaccttg
      121 cgcagcgaat atgaacaatt aaaagtggaa caacaaaact tccaagatcg tttacgttca
      181 cttttaggtc aaatcgacaa cgtttaattc tattttcagc acaaacggct aaatttttag
      241 ccgtttttta tttgttacag ctatggcaaa actctatttt tactactcct caatgaatgc
      301 aggcaaatct actactctgc ttcaatcttc ttataattac caagaacgtg gaatgaacac
      361 tttagtttat accgccgcta ttgatgaccg tttcggtgtg gggaaagtca actctcgtat
      421 cggtatttca caagaagcca atttatttac cgctgatacc aatctatttg cggaaattaa
      481 ggcattacac tcaaacaaag cgttacactg tatcttgatt gatgaggctc agtttttaac
      541 taaaacacag gtttatcaat taagtgatgt ggtcgataaa ctcaaaattc cggtgctttg
      601 ctacgggcta cgcaccgatt tccaagctga attatttgaa ggtagcaaat atttgttggc
      661 ttgggcagat gagctggaag aactcaaaac catctgtgat tgtggcaaaa aagcccattt
      721 tgtcgttcga ttaaatgaaa aaggcgaagc cattaaagac ggtgaacaaa tacaaatcgg
      781 cggcaatgat agatatctct ctgtttgccg ttatcattac aaacaaaagt taggtaagct
      841 ataagctaca agaagcagca agcggttaaa ttttcgggaa tttttgcaaa ttttcagcga
      901 aatttaaccg cttgtttgtg ttatttacct ctctttactt tcctgcaaac cgaatttgct
      961 cactcatttg tctcatcaca ctcgaagtct cggcaaaaaa ctgttggtaa gaggggcaaa
     1021 ggtagttgtg gttttcgctg tttgcttggg ggacgatgcg gtgtttgggg cagccgccgt
     1081 ggcaaagtat gcggaatttg cagtttaggc aggcttgcga gagttttgcc tgtttattct
     1141 gcccgaattg gcgttgggcg gctgatgaga cgatctctgc cagctgctgt tggttgaggt
     1201 tgccgatgtg gtaatcggga tagacgaaat ggtcgcaact gtacacatcg ccacaggctt
     1261 ccaccaccag cgagctgcca caggtcgggc ggaatacaca gttgttggag ggatagccaa
     1321 gccattgccc gagcaggtta tcaaactcga tcacaaaaat ctgcccacgg tcaggcagcc
     1381 attcgtgaaa aacatccact aaaaattgcc cgtagccttg gggcggaacg gaaaagggtt
     1441 gtaattcccc cttgtggctt tccaccaccg gaatgaactg catataacgg ctaccgaggg
     1501 ctttgagggc ttgataggtt tctctgcccc gttgccagtt gcggtcgttc accaccgtga
     1561 gggtgttaaa ttccacgcca acctctttca ataaatcgac cgcacttttc acccgttcaa
     1621 aggtcggttt accgttggtg gaaatgcggt agcggtcgtg aatgtcgctc agtccgtcaa
     1681 tggataagcc caccagaaaa tgattctctt tgaaaaagct cgcccactgg cggtttaggg
     1741 caatgccgtt ggtttggatt gcgttggtga tctgcttgcc gtttgcaaat ttttgttgat
     1801 atttgaccgc ttgtttgtag aaatctaagc ccagcagggt cggctcgccc ccctgccaca
     1861 caaaatccac ccgttggctt tggttggctt caatgtaatg acgaatgtag ttttgcagcg
     1921 tttcatcgtt cataaactgc gatttttctg gcggaatggt ctgttccttg ctcagataaa
     1981 aacagtactc gcactgaata ttacagtgaa aactgctggg ttttgccatt aggtggaagt
     2041 aggtggtggt cattgtatct ctaaattgta ggggcggact ttatgttcgc ccattgttta
     2101 cattaatttt cgggcgggta taaaacccgc ctctacaaac aattatatct catcaataat
     2161 ccgatacacc caattttcca gtgggtcgtt gaggcgtttc atttcctgtc gcatttcttc
     2221 caacatctct tttttcacgg cttggtaggc ttcgtcataa aagaggttgt gcatctcttc
     2281 ggggtctttt ctgacatcgt agagttcgca gcggtcggtg gcgttgaaga ccaatttgta
     2341 atccttacgc cgccacattc gctgttcaaa atagacaaaa tgccctgcca gttggcacaa
     2401 caagcctttg cggtcgttgt tttggctttg tctggttatc ggcagaatac tctcgccttg
     2461 gaaagcggtc gggatcggtt gatttgccac atcatacacg gtggaagtga gatcgtgcaa
     2521 ataaacgagg ttgtcatcga cttcgttcac ccttgtagag tgcggatctt taataatcag
     2581 cggaatgttg taggtggttt caaacataaa ctcgcctttt tcgatcatct tatgcgcccc
     2641 catcgcatcg ccgtggtcgg cggtagcaac gaggaaggta ttttcataga gattgttctc
     2701 ttccaagaaa cggaacagct cgccaatggc atcgtcaatc agcgtgatgt agccccagaa
     2761 tttagaaatc acctctttcc aacgatcttc gctcgcctcc cacattcccc acatttgtga
     2821 aatggtgcgg aagtggttcg gtttgccctc aagcggtttg aagaaactct cgtccaatac
     2881 cacttggctt gggtcataca ttgaataata cggctccggc actacacacg gagtgtgcgg
     2941 cccccagaag ttgatccacg caaagaacgg ttttttctca tcaagggagg cttgaatgta
     3001 ttttttcgcc tcgtcaatga taaaccactc tattgtctgc tcgcgactgc cggaaagcaa
     3061 accacagagt tcctgcacac gcaggtgtgg attgtcgcca aaataggctc gactgacttc
     3121 gggtgcgtca tagccctttt ccgccagcca ttcacgataa cggttggagt gtgttggcgg
     3181 ctgattaaac acgaggtttt tatacacttg gctgcccggg tagccatagc cgtcaaagtt
     3241 atgaccggcg atgccataat cttcgggaac ggattttgta ccaacgtgcc atttgccgat
     3301 cacaaaggag ttatagccct ccacgccggc aatattaggg ttttgttgtg gaatttcgcc
     3361 tgtgccgcct ttttcgccgt ttttgataat cccgtggctg gacggcatta agccggtaaa
     3421 cagcgaggtg cgagccggcc cgcagaccga agccggcgta aaggcgttgt taaaccgaat
     3481 gccgtctttc gccaagcgat ccaaattcgg ggtttttacc acctgatgcc cgtaagtgcc
     3541 gagcatatct ttacgcactt gatctaacaa aatatagatg atgttattca taatgacctc
     3601 tttaaggctt gttaataacc gataaattat caagtttcgg agatctgttc ccctctttag
     3661 caaagagggg atttttgatc tcgagccttt tccgttcttg gtatttttat actaatgagg
     3721 agaaggctca cattcattta attcaccgcc tttttgcctt tacattttgc aaaaaacacg
     3781 acacaaacca ccgcttgtag cacagcatac accgccagca ccattgccgg attgccgtct
     3841 ggtgaggcta aaccgagcgg agagaggaaa gcgtatagcg tgaataagcc caacacgata
     3901 gaagccactg ccagtggggc atattcccag ctggttaagt ccacattggc gtggttgatt
     3961 ttgttgtctt cgtatggagt cgcacgtttt aggaaaattc ctaaaatcag cattaacgcc
     4021 acatcgaaca cgaacaagcc agcttgcaca tacacgaagt tgatttttac atcaaacacc
     4081 caaacgatgc agaagtagag aataacgtgt gcgagtaagg caatgcgtgc ggctttgcct
     4141 gagacggttt tgttgaataa gccgatgaca aacagtgcca caatcggaat gttcacaaaa
     4201 ccggcgaaac gtttggtcag caagaaaata ccgtctgtgc cgaacatcag taacggccca
     4261 aagatcatcg taatcaccgc cattaccgca gagacttttt tcgcataact tatcagttcc
     4321 gcatctgtga actgtttttt gctgatagac ggcagtaagt ctttacagta aatggttgcc
     4381 gctgagttta agaacgagtt gaaggtactc aaaatcgccc cgaacagtgc ggcaataaag
     4441 aagccttgta gcacggttgg gaaagtttta ttcactaatt cagggtaaga cacatcaatc
     4501 ggtttcaagc cctcacctaa aatatggaaa ctgagtaagc ccggtaagtt taagataagc
     4561 ggtagcaata ataagaacag tgccgcaatt aagatccctt tttgaccggc ttttaagtct
     4621 ctcgccccca aggcacgttg cacaatggct tggttggtcg tccagtagaa gaaatgcacc
     4681 accataatac cggtgaaaat ggtcggccaa ggcactgcat cggtggcact acccaccgca
     4741 ttccattttt caacgtgagt agtggtgatg attttcaccc cttctgccat actgccatta
     4801 cctaaataga taagtgcaaa caccggcact aataatgccc caatgactaa caagaccgca
     4861 ttccaagtgt ctgacaccgc caccgctttt aagccaccga aaatggcata aatcgcccca
     4921 acaataccaa tcgcaatcac cgtataggta atcgctgccc catagcttaa gccgaaggca
     4981 gtttcaaggt tgaagatttt attgaaggca atcgcaccgg tgtaaagtgc agtcggaatg
     5041 acgatgaaaa gatagaacac caaaaacaag cccgacataa tcaaacgggt ttggcggtcg
     5101 aaacggtttt caaagaactc cggaatggtg gtataaccgt tgcggatata tttcggcaac
     5161 agataaagtg ccaagaagca aagcggaatt accgccggca cagtccacgc aataattgag
     5221 aaattaccgg cataagagtt ggcattcacg ccgataagtt gctcggtaga aagggaggtt
     5281 aagaccatcg aacagccgat aaccgtagca ctcaagccac gccctgccaa gaaataacct
     5341 ttagatgtcg aaagatcgtc gtttctggtt tttagccaag agatataccc gactaatcca
     5401 gttacaacca gaaaggtaat tattgttaat aaca
//
LOCUS       DANLXB010000160         5413 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLXB010000160 DANLXB010000000
VERSION     DANLXB010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            67..1200
                     /gene="carA"
                     /locus_tag="PXD41_002090"
     CDS             67..1200
                     /gene="carA"
                     /locus_tag="PXD41_002090"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL6289592.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1303..4509
                     /gene="carB"
                     /locus_tag="PXD41_002091"
     CDS             1303..4509
                     /gene="carB"
                     /locus_tag="PXD41_002091"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL6289593.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4584..>5413)
                     /locus_tag="PXD41_002092"
     CDS             complement(4584..>5413)
                     /locus_tag="PXD41_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HDL6289594.1"
                     /translation="TSGHFFAKSDRLYNVEDSLQENGSARESLAYSARIEIGLKTFLD
                     NGGFKAFTDNFQNLNGIKQLPGLAVQRLMEQGYGFGGEGGWKTAALVREVKVMGYGLP
                     NGSSFMEDYTYDLDEQNQVVLGAHMLEVCPSIAKEKSTLAIRPLGIGGKADPVRLIFS
                     SKAGKAVNATVVDMGDRFRMVVADLDAIASPNPMPNLPVGHAFWKLQPNFYVGTQAWI
                     LAGGAHHSVFSLDIDADMLRMFAEYFGIEFIHINQNTELPQLKNELRWNDLAYKFTK"
BASE COUNT         1541 a         1244 c         1219 g         1409 t
ORIGIN      
        1 ttgattaaac ttagtcgcct acttctaagg ctacacagat aaaatttgat gattaggagt
       61 aaaacaatgt tcaaaccagc aattctggtt ctcactgacg gttctgtctt ttccggcaaa
      121 tccattggtg ctgacggtca cactatcggt gaagtggtat ttaacactgc gatgaccggt
      181 tatcaagaaa tccttaccga tccttcttat actaaacaaa tagtcaccct gacttacccc
      241 cacattggca ataccggcat taatttagaa gataaagaat cccccaatgt ttgtgcctcc
      301 ggcttaatta ttcgtgatct tcctcttctc catagcaact tccgtgcgtc ctcctcactt
      361 tcagattatc tcattcaaca aaacattgtc gctattgccg atattgatac ccgccgttta
      421 acccgaattt tacgcgaaaa aggggcacaa gccggttgta ttttagtagg cgatgccaca
      481 gaagagaata ttgctaacgc tttggcattt gccaacagtt tcggttctat ggctgggaaa
      541 gatttggctc aaagtgtcac ctgcaatgaa ttatataaat ggacagatgg tgaatggcaa
      601 ttaggtaaag gttatgtacc gcaacaacaa accgagttcc acgtagttgc ctatgattac
      661 ggtgtaaaac acaacatttt gcgaatgctt gccgaacgag gctgtcgctt aaccgttgtg
      721 ccggcaaaaa cctctgctga agctgtgctt gcgttaaatc cggacggtat tttcctttct
      781 aacggcccgg gggacccgga gccgtgcgat tatgccatta ccgcaatccg aaaattattg
      841 gaaacgcaaa aacccatttt cggcatttgc ttagggcatc aacttttagg tttagcggca
      901 ggcggtaaaa ccaaaaaaat ggtgtttggt catcacggag ctaatcaccc ggtacaagat
      961 ttagacagcc aaaaagtgct catcaccagc caaaaccacg gttttgaagt agatgaatcc
     1021 agcttaccat ctaatgtgcg agtgactcac cgctcactgt ttgacggcac ggtgcagggg
     1081 attgaactca ctgatagacc ggcgttttcg ttccaaggtc acccggaagc cagcccgggg
     1141 ccgaatgatg ttgcctattt atttgaccga tttgtcagtg agatgaaaaa agtgaagtaa
     1201 ggacgtacct atgtgtgtcc atcaagcggt cgaaatttgc aaaaaactta ccaaaaatga
     1261 ccgcttgtag cctgaaataa acgagataaa agagagccca aaatgccaaa aagaacagac
     1321 ataaacacta tcctaattat cggtgccggt ccgattgtga tcggtcaagc gtgtgaattt
     1381 gactactccg gagcccaagc gtgcaaagcg ttgcgtgaag aagggtataa agtggtgttg
     1441 gtgaactcca accctgcaac cattatgacc gacccgaata tggcagatgt gacttacatt
     1501 gagccgattg aatggaaaac ggttgaaaaa atcattgaaa aagaacgccc tgatgccatt
     1561 ttaccgacta tgggcgggca gacagcgttg aactgtgcct tagatctttc gaaaaacggt
     1621 gtgctgaaaa aatataatgt agagctgatc ggagctaccg aagacgcgat tgataaagcc
     1681 gaagatcgtg gtcgttttaa agaagcaatg actaaaatcg gcttgaatac gccaaaatca
     1741 ttcgtttgcc acagttttga agaggcctta gcagcacaag agcaggttgg ctttccaacc
     1801 ctgattcgcc cctctttcac gatgggaggc tccggcggtg gtattgctta taatcgagat
     1861 gaatttatcg ccatctgcga acgtggtttt gaagcctcgc ctactcacga attactgatt
     1921 gaacaatccg tactaggctg gaaagagtat gaaatggaag ttgtgcgtga ccgtgccgat
     1981 aactgcatta tcgtctgctc gattgaaaac ttcgacccga tgggtgtaca caccggcgac
     2041 tccattaccg ttgctccggc acaaacgcta accgataaag agtatcaaat tatgcgtaac
     2101 gcttcgctgg cggtattgcg tgagatcggc gtggacaccg gcggttcaaa tgtgcaattt
     2161 gcgattaacc ctgcaaacgg cgagatgatc gtcattgaaa tgaaccctcg tgtgagccgt
     2221 tcttctgcac tcgcatctaa agccaccggc ttcccgattg ccaaagttgc ggcgaaattg
     2281 gctgtaggct acacactcaa cgaattgcgt aacgacatca ccggagggct gattccggct
     2341 tcattcgagc cgactttaga ttatgttgtg accaaaattc cacgcttcgc ctttgaaaaa
     2401 tttgccaatg cagacgaccg attaaccact caaatgaaat cggtaggcga agtaatggca
     2461 atgggaagaa ccttccaaga gagtttacaa aaagccttgc gaggcttgga aaccggcatt
     2521 tgcggcttta acttgctttc cgaagagcct gaaaaaatcc gccgtgaact tgccaacccc
     2581 ggaccaaacc gtattttgta tgttgccgat gcctttggag caggcttttc attggaagaa
     2641 gttcaccact attctaaaat cgacccgtgg ttcttggtgc aaattcaaga cttagtactt
     2701 gaagaattag cgttagagaa aaaacagttt agcgatctag atgctaacga aatccgccgc
     2761 ttaaaacgca aaggcttctc agacaaacgt atcgcacagc ttaccaaagt cagcgaaaaa
     2821 atggtgcggg attaccgcca tacttacgct attctaccgg tgtataaacg ggtagatacc
     2881 tgtgcagccg agtttgcctc agatacggct tacctctatt ctacttacga ggaagagtgt
     2941 gaagccaaac cgtctgatcg caaaaaagtg atgattttag gcggcggacc aaaccgtatc
     3001 gggcagggga ttgaatttga ctactgctgc gttcacgcct cgcttgctct gcgtgaggca
     3061 ggttatgaaa ccattatggt gaactgcaac cctgaaaccg tttccaccga tttcgacacc
     3121 tccgaccgcc tctatttcga gccgctaaca ttagaagatg tactggaaat tgtgcgtgta
     3181 gaaaacccgt ggggcgtgat tgtgcattac ggcggtcaaa caccactgaa attagcgaat
     3241 gccttatctg atgccggtgt aaacattatc gggacttccg ccgacagcat tgatgccgcc
     3301 gaagaccgtg aacgtttcca acaaattcta aacactctcg gtttaaaaca gccggcaaat
     3361 cgcaccgccc gtaatgcgtt ggaagcggtg gcattggcaa atgaagtagg ctatccgctg
     3421 gtggttcgcc catcttatgt gctaggtggt cgggcaatgc aaattgtgta taacgatgaa
     3481 gagctaaacc gctatatgcg tgaagcggta tcggtttcca acgacagccc gattttactc
     3541 gaccacttcc tcaataatgc gattgaagtt gatgtggatt gcatttgtga cggcgaaaat
     3601 gtactcattg gcggcattat gcaacacgtt gagcaagccg gtattcacag tggcgatagt
     3661 gcctgctcac tacctgccta ttcgttaagc ggtcatgttt tggacgaaat tcgcaaacaa
     3721 accaacgcaa tggcgtttgc tctcggtgtg aaaggcttga tgaacgtaca atttgcagta
     3781 caaaatgagg tcgtttatgt gttggaagtt aaccctcgag ccagccgtac tgtaccgttt
     3841 gtcagcaaag ctaccggtcg cccactggca aaaatcgctg ctcgcgtgat ggctggtgaa
     3901 acccttgccg acttaaatgc attagaggaa attatcccaa gcaaattctt cgttaaagaa
     3961 gcggtattcc cattcatcaa attcccgggt gtggatacca ttctcgggcc tgaaatgcgt
     4021 tctaccggcg aagtgatggg cataggtaat acctttgctg aagcgttctt caaagcacaa
     4081 ctgggtgccg gtgaacgaat tccaaaagtc ggcaaagtgt ttatgtcggt tattgaagag
     4141 cataaacctg ctttaattta cattgccaaa cgtttccaag aacaaggcta cggtttatgt
     4201 gccaccttcg gcactgcaaa cttcctacgg caacacggaa ttgcagtcca aacggtaaac
     4261 aaagttcgtg aagggcgacc gcatattgtc gatgcgatca aaaacggcga aattgcgttg
     4321 gtaatcaaca ccgtcagcgg cgagcctgaa gtgattgccg acagccactc tatccgccgt
     4381 accgccttgc aacaacgtgt gcctatttac accacccttg caggtgctga tgctatctcc
     4441 tacggcgtaa aacatatcaa tgagtttgat gtgtattcag tgcaggaatt agaacaaaag
     4501 gctaactaaa ataaagctaa aatgacaagc ggtcagattt tgcaaatttt ttacaaattc
     4561 tgaccgcttg tgtttgtaga ggattattta gtaaatttat atgctaaatc attccagcgt
     4621 aattcatttt tgagttgtgg tagctcggta ttttggttga tatggataaa ctcaatacca
     4681 aaatattcag cgaacattcg tagcatatcg gcatcaatat ctaaactaaa tacactatga
     4741 tgagcaccgc cggctagaat ccatgcttga gtacctacat aaaaatttgg ttgaagcttc
     4801 caaaaagcat gcccaactgg taaatttggc attggatttg gtgaggcgat agcgtctaaa
     4861 tccgcaacaa ccattctaaa acggtctccc atatctacaa cggttgcatt cactgctttt
     4921 cccgccttac tactgaaaat taagcgaaca ggatctgcct taccgccaat acctagcggt
     4981 cgaatggcta atgttgattt ctctttggca atagacggac aaacttcaag catatgagcc
     5041 cccaatacca cttggttttg ttcatctaaa tcataggtgt agtcttccat aaaggaagaa
     5101 ccgtttggta agccataacc catcactttc acttcacgca caagagctgc ggttttccaa
     5161 cctccttcac caccaaatcc gtagccttgt tccattaaac gctgaacagc caagcccggt
     5221 aattgtttaa tcccatttag attttggaaa ttatcagtaa aagctttaaa tccaccatta
     5281 tctaagaatg tttttaagcc gatttcaata cgagcagaat atgcgagaga ttctcttgct
     5341 gaaccatttt cttgcaagct atcctcaaca ttatacaagc ggtcagattt tgcaaaaaaa
     5401 tgaccgcttg ttg
//
LOCUS       DANLXB010000161         5409 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLXB010000161 DANLXB010000000
VERSION     DANLXB010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5409
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            257..1261
                     /locus_tag="PXD41_002093"
     CDS             257..1261
                     /locus_tag="PXD41_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6289595.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1316..3166
                     /locus_tag="PXD41_002094"
     CDS             1316..3166
                     /locus_tag="PXD41_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6289596.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3262..3816)
                     /locus_tag="PXD41_002095"
     CDS             complement(3262..3816)
                     /locus_tag="PXD41_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL6289597.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(3883..5364)
                     /locus_tag="PXD41_002096"
     CDS             complement(3883..5364)
                     /locus_tag="PXD41_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL6289598.1"
                     /translation="MKMKNFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGN
                     AAVADNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTA
                     IVPNAYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYD
                     LGYGFVLGAGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAG
                     IAAGNTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLK
                     GDKWALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAE
                     IDGTLRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTEN
                     FNDSQRIALGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTP
                     NLSADVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         1696 a          981 c         1154 g         1578 t
ORIGIN      
        1 agctgtaata agacggaata atgtcagacc aagatagata ctttcaagta aaatcaagca
       61 taaaaatgat tttcagactt tacaaatctg aaagaatgtg taagatcagg attgtccgaa
      121 attcggatgg aaaatcccag tggatgtatt ggctggatac atcataataa ctatgtattt
      181 gtgaatgtta tttgaatgat tctacgtagt tgattcaaaa tcagcagtgc ggtatctgca
      241 tgctaatgat gaaaaaatgc cgggcgatgc aaataaaatt atctctaacg gcaccagtgc
      301 cggaggagca ttatctactt tgttaggagc ttcagctgat cattacgact atgagcctta
      361 tttgaaagag gcgggggcat tgaatgccag tgacaaaatt tttgcagttt ctgcctattg
      421 cccaattacc aaccttgaaa atgcggatat ggcgtatgaa tggcaattta atggtgtcaa
      481 tgaatatagc cgaatcgata tgagtcgatt aaatgcagca gagtttaacg accgctcaaa
      541 accaaaacca aagccgaaaa ttgaaggctc gttaaatgag gcggaaatta aagtttctaa
      601 tgaattagca gaacgctttc cgacttattt gaacagtttg catttggttg atgagaaagg
      661 caatccttta acacttgatc caaaaggcaa cggctcgttt aaagattatt tatctgaagt
      721 ggtaaaaacg gctgcaaata aagcctatag aggtttagtt caagatagcg aagagcaaaa
      781 agcctttcaa caaattagtt ggctttcatt tgagaaaggc aaagtcagca gtgtggactg
      841 gtttggttat gtgttttcag ataaacggat gaaatcacca cctgcatttg atgcgttaaa
      901 tggaagttcg ggcgagaata atttatttgg cacagacacg gaaaataacc gccattttac
      961 gctttatagt gcggaacgtt ctgccaataa agatctcaat ttagccgatc cgcaaatcgt
     1021 gaaacggatg aacccgatgc actatttgga taacccaaat gctgcggaac attggcggat
     1081 tagggtggga acggcagata gagatacctc gctggcaatt tctgcaatct tagcaataaa
     1141 actgcaaatg gcaggcaaaa atgttaatta tgaaaccccg tggaatgtac cccattcagg
     1201 tgattatgat gtaaatgaat tattcctatg ggctgatgag ctagtcaaag gcaaaaagta
     1261 aaaaatagag taaaataaag cagatctgat ggtctgcttt ttgttttgag gtcgtatgca
     1321 agttaaaaaa tttagccaaa aatatattaa ttgggtatta aagctagggc ggttaaaagc
     1381 ttctctttta ggctttttta tggtcgctct ttcggcaatt ttaattcaaa gtagcttaac
     1441 ctatcttttt attgggcgag tagtcgtggt ggatatttta cgctccatcg cttttggttt
     1501 aatttctgcg ccttttgtgc tttatttctt cacgttattg gtggaaaaac ttgaaatatc
     1561 tcgcttgaaa ttagaaaaag cagtaagaga tttggaagaa ctccgggaac aagatgccta
     1621 tcttaacgct aaattagaaa aaaacagccg tgataaaagc attttaatgg cgaccattag
     1681 tcacgaactt cgtactcccc ttaatggaat tatcggcttg agccaaattt tgttagatga
     1741 taaaaccacc gaaaaacagc aagaatatct aaaaactatc aatatgagtg ccactgcatt
     1801 ggctcatatt tttggcgata ttattgattt agaaaaaatt gatagtagcc gaattgaatt
     1861 ggtaagaaaa gaggtggaat ttgaacaact cattcacgat attgctaatt ttgggcattt
     1921 tatggcgggc aataagcaga ttaattttga agtgaagtat ccgcctgatt tgccgaagta
     1981 tatctatatc gaccacgcac gcttgagcca aattttatgg aatttgatca gcaatgcggt
     2041 gaaatttacc cctgcaagcg gtcgaatttt gctggaaatt taccaattag ataaagaaca
     2101 gtttagcttt gcggtgacgg attcaggcat cggtattccg gaaaaagatc aacgcaaaat
     2161 ttttgatatg ttctaccaag cggaaaactc taaagagaaa aaagcgcaag gtagcgggat
     2221 tggcttatcg gtctcgaaac gcattgcgaa gctaatgggc ggtgatttgg tggtggcaag
     2281 ccaagaaaat caaggctcaa cttttaccct cactgtgcag gcagaaagca cggaaaccaa
     2341 gccgatattt gctattcagc aacattccct taaggtgcta ttggtagaag acattgaaat
     2401 gaatgtggtg gttgcccgag caatgttgga gaaaatcggt tgcgtggttg atgtagcaat
     2461 gagtggtgaa gaaacgttcc aacattttgc acagaacagc tacgatctga ttttacttga
     2521 tattcaactg ccggatacca ccggttttga aattgcacag caattaagat tgcaatatga
     2581 aaacgaggaa attgactatt taccgctgtt ggttgctttg acggcaaatg tgatccaaag
     2641 ccggcaggag taccaagcac aaggtatgga cgatgtgcta cacaaaccgc tctctttaga
     2701 tgaattaatg cgttgtctca accaacattt tggagatgat tttttgcaaa aaaatgaaga
     2761 aaaacagccg cttgtagaga gaggttctga gaatttacct tatagcatta caattcttaa
     2821 tgaattgatt ggggtaatgg ggaaagagaa tgtgcttgcc aatatggatt tatttgctga
     2881 tttaatgccc acttatttgg caaatttaca gcgttattta agtgattggc aaaccacaaa
     2941 ttctgtggaa agccgtaaat taacggcgga cgaggctcat aagattaagg gagcattagc
     3001 atcagtcgga ttacatcagc tacaacaaac tgctcagctt gctcaatccg ataacggcga
     3061 gcagtgggag caaaatattg cacactgggt ggaaatgatt tgttccaaat ggcagatgga
     3121 tttgcaatta gctaaggaat atgttagaag caagggggac atttagtaaa tttgaaatgt
     3181 tacgatggtg caagcgtcca cgcttgtacc aattttaata tctgaagcac aagcgtggac
     3241 gcttgtgcta tcaaaacgta tttaccattt cttggttttc ggttttacaa attcaatgcc
     3301 tttatcttta taggtaatat cttccagctg taatagaaaa cgcttattcg gcaagccacc
     3361 accgaatccg gttaaggctt gatttttccc taatacccta tggcaaggca ctaaaatcga
     3421 aatcgggttt cgcccaactg caccgccgac ggctcgcatc gcacttggct tgcctagttg
     3481 ggtggcaatt tcgccataag tagtagtttg cccgtaaggg atttcacgca aaattttcca
     3541 aactgattgc tggaatggag tgccttgcgg ggcaagaaaa tccaactgct gaaaatccaa
     3601 tggctcgccg gcaaaatagc ggtctaaaat ttctttggtt ttgcaaaaaa tttctaaaat
     3661 ctgaccactt gcagcttgag cggaaaggaa attatcaagc gaggtggttt gttgctcttg
     3721 ccctagctca atgtaaatca agccttcttc tgtggctaaa agcaataatt gcccgatagg
     3781 gcttgggtag taatcgtagt aaatttgaga tttcatgttt ttatgccaat aaaaaaagag
     3841 gtgtaattga ttttacacct ctttaaacct taattcatca aattagaatt tgtagtttac
     3901 gtttaaaccg taaagatttg cacgagcttt gctcttgaat gtggctaaac cgtcttcaga
     3961 gaaggtcagg ttgctaccac gaagatgtga gtaacctaca tcagcagata ggtttggcgt
     4021 gaaacgcacg gttgcaccta cagaatacca agcacgatca gtgtccggaa ttgagattga
     4081 tggatgagtt acacttgcac tttcatcaaa tgctacacct gtacgcaatg ttagcatttc
     4141 attcacatca taagacaagc ctaatgcaat acgttgagag tcattaaagt tctcggtttt
     4201 gtgcaatagg cggttacctt gcatatcata agcttctagg ctttggaatt tgctccagtc
     4261 tgtgcgttta tagctgtatt gtgcagcaag tttatcggtt agtttgtggt aacctgacac
     4321 ttcccagaat gccggtaggc gtaatcttag tgtaccatca atctctgcac cgccggtaat
     4381 ggtatctacc atcttaggaa taactacagg aacggtatta gaatatttgc ctttaaattt
     4441 aagatcaatt tcagagtggt aagtaaaacc taaacggttt ctttcattga tattataaac
     4501 caagccaaca ttccaaccca atgcccattt atcgccttta agtttatgaa ttgttgaact
     4561 tgcattggta ttttgaatgc cattaaccaa acgttctaat tgagcagaat tcgtgatggt
     4621 ttggtttaaa ttttgagatt ttaataaacc gtttacttga gctaatactt gtgttttttg
     4681 agcttcaaga gcggtattac ctgctgcgat acctgcctca agagctttta aaccttgaat
     4741 tgcactttgt acttgtactt tcttgtcttc caaaaattgt ttagctggag caaaacgtgc
     4801 cgcaccggca cctaagaaac gtcctaattc tgcttttgcg tgtactgcat tcaaacctgc
     4861 ccctaataca aaaccataac ctaaatcata agccgcacta aaattaacat tcacagcact
     4921 taatgatgta cgaccaccta agaaaccagc agaatagtta gggtcaaatt cagatatcaa
     4981 accataattt acatttacgc caccaccaat agaaaggcgc tcattgatag gtgaaacgat
     5041 ataagcattt ggaacaatag cggtaggaat gacattttta tgtgaggcat ctgcacctgt
     5101 agcattgagc tttccatcaa tatttacatc agcatctacg aaaataccac cggcagaaat
     5161 ttcggtttgt ttaaataacg tcattaacgc agggttggtt gcaacaacag aagcgttatc
     5221 ggctacagcg gcattacctg cgtaagctct acctaaaccg gatgttgaaa tttcagctaa
     5281 ttggaatgcg gcagcagatg caccggctga gctgaatgct actaatgaag cgattaaagt
     5341 tttgctaaag tttttcattt tcataggaaa tctcttaaaa aatatatatt ttagaatgaa
     5401 taattcata
//
LOCUS       DANLXB010000162         5394 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLXB010000162 DANLXB010000000
VERSION     DANLXB010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            7..678
                     /locus_tag="PXD41_002097"
     CDS             7..678
                     /locus_tag="PXD41_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL6289599.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
     gene            933..1262
                     /gene="trxA"
                     /locus_tag="PXD41_002098"
     CDS             933..1262
                     /gene="trxA"
                     /locus_tag="PXD41_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018357021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL6289600.1"
                     /translation="MSNVIHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDD
                     LSVDAQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMA
                     EFIKQAL"
     gene            1433..2656
                     /gene="hflK"
                     /locus_tag="PXD41_002099"
     CDS             1433..2656
                     /gene="hflK"
                     /locus_tag="PXD41_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL6289601.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            2659..3546
                     /gene="hflC"
                     /locus_tag="PXD41_002100"
     CDS             2659..3546
                     /gene="hflC"
                     /locus_tag="PXD41_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL6289602.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            3720..5018
                     /gene="purA"
                     /locus_tag="PXD41_002101"
     CDS             3720..5018
                     /gene="purA"
                     /locus_tag="PXD41_002101"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL6289603.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(5178..5248)
                     /locus_tag="PXD41_002102"
     tRNA            complement(5178..5248)
                     /locus_tag="PXD41_002102"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5218..5220),aa:Arg,seq:tct)
BASE COUNT         1682 a          948 c         1219 g         1545 t
ORIGIN      
        1 atgaaaatga aaaaatcaac tttagcaatt attttaggtg gggcattatt aactggaact
       61 gcggtggcac atcaagcagg tgatgtgata ttccgtgccg gtgcggtaca tgttaaggca
      121 aattcaagtt cagatgcaaa atcaaaagca gcgacaggta ttgatgtaga tttagaagtg
      181 aaaaacaata ctcagttagg cttaactgca acttatatgt tagccgataa tgtgggtatt
      241 gagttattag gtgcaacccc tttctctcat aaaattaatg ccaaagccaa agttttagaa
      301 tcaggtgcag aagtagattt ggatagagtt gttatcttaa aacaattacc accgagcctt
      361 tatgcccaat actatttctt tgagctaact gcaaaagtaa aaccttacgt tggtgcaggt
      421 ttaaattaca ctcgcttcta ccacgctaaa tcagttagcc ctgctgttac tgacttaagt
      481 gtaaaaaaac attctttcgg accggtagca aacctaggtg ttgatgtaaa attaaccgat
      541 aacatctact tcaacgcggc agcttggtac acacgcatta aaacaaccgc aaaatttaaa
      601 gcagcaggtg cagatcacga agtaaaagta aaacttgatc cggttgtctt atttgccggt
      661 ttcggggtga agttctaatt atttgttggg aacgagttgg gctaatctta gtgattagtc
      721 cttttttgtt aaagttgttt gaatatagcc ctttccactt ttaattaaat aattgaagag
      781 ataataaaat ctcactatgc aaatatttat tggtgtaatt ggtaaatctt gcttgaaatt
      841 ttatagatta atctctatct tatacaaaac tgttcgcctt aacttgccag ttagggcgtt
      901 tcttttttta tttaatattt aaggataaac ttatgagcaa tgtcattcat acaacagatg
      961 ctacatttga acaagatgtt ttaaaatcag atgtaccggt attattagac ttctgggcgc
     1021 cttggtgtgg tccttgccgt atgatcggcc ccgtacttga cgatttatct gttgatgcac
     1081 aatttgatgg taaagtaaaa attgtcaaaa tgaacgtaga tgaaaatcca tctgtaccag
     1141 cacaatttgg cgtacgcagc attccatttt tactattatt caaaaatggt gaagtgattg
     1201 cccagcaagt tggtgcaatt ccgcacgccc aaatggctga atttatcaaa caagcattat
     1261 aattttaaga gcaatactag ggcgaattta tcgccctatt tttttgcaaa taaatagtga
     1321 aaaaagaccg cttgtttcag ataaacctag tcaaaagctt actaaatagg tacaatcact
     1381 aacttgcatt ctaagcttta aagtgcgatt cgattttatt ttggagatat ttatgtcgtg
     1441 gaatgaatca ggcaatcagc aagatccttg gggtaaaccg gggcagaaaa aagctgagcc
     1501 aaagcctgag caacaagaac agggttcaca acaagagccg accaataatc aaagaaatga
     1561 acaacagccc cctgatttag aagaagtatt tagcagttta ttaaaaaaaa tggggggtgg
     1621 aaaagggcct aataatagtt caaatcaacc tagtgcaagc ttagggaaat ttctacctgt
     1681 ggttttaggt cttgcagcag tagtttgggt tggctcaggt ttttacactg tgcaagaggc
     1741 tgaacgtggt gtggttactc gtttaggtaa gctgaatgat atcgtgttgc cagggttgaa
     1801 ttggaaaccg acttttattg attcggttac aagagtaaac gtagaacgtg tttcagagct
     1861 gaacaccagt ggctcaatgc tgactcaaga tgaaaatatg gtgcaggtag aaatgacggt
     1921 tcagtatcgt gtggaagacc cggctaaata tctgtttagt gtgagcaacc ctgatgacag
     1981 cttaaaacaa gcaacagaca gtgccttgcg ttatgtgatt ggtcatatga cgatggatga
     2041 aattttaacc acagggcgtg caaccgtgcg tgaaagaacg tggtcgacat tgcgtgatat
     2101 tatcaaaacc tatgatatgg gtttattggt aacagacgta aacttccaat atgcacgacc
     2161 gcctgaagag gtgaaagccg cctttgatga tgcaatcaaa gcacaagaag atgagcaacg
     2221 cttaattcgt gaagcggaag cctatgcaag aggtgaagag ccgattgcac gtggccaggc
     2281 acagcgtacg attgagcaag ctcaagctta caaagaagca gttgtgttaa atgcgaaagg
     2341 ggaagtggag cgtttgagtc aattattacc tgaatataaa gcctctccag agctgactcg
     2401 tgaacgttta tatatccaga caatggaaaa agtcatgaaa aatacgccga aagtggtgat
     2461 ggattcaagt ggtaataatt tgaatgtatt gcctttcgat aagctaatga attcttcatc
     2521 ggtaataaaa gcggagcagc ctgcggcggc acaagtagtt acaccacaag ttgttcagcc
     2581 gcaagtacag ccaagaacac aaattcagcc gcaacaagca gaacaacaag aaccaactcg
     2641 taaggggaga ttttaatcat gcgtagatta ttagtaccta tacttgctgt agttgctttt
     2701 gttgtgctac aggcaatcac cattgtaaac gagggcgagc gtggcattat gttacgtttt
     2761 aacaaagttc atcgtgatag cgatcaaaaa gtggtggtat atgaaccggg gattcacttt
     2821 aaagtaccat ttatcgatag tttaaaggta ttagatgctc gtattcaaac tctagatggg
     2881 caagaagacc gttttgtaac agtcgagaaa aaagatttat tagtggactc ctatgtaaaa
     2941 tggcgaatca gtgattttgg ccaattttat acctctactg ggggggatta ccaaaaagcg
     3001 gcggatttat tacgccgtaa ggtaggggat cgtctgcgtt ccgagattgg ttctcgaacc
     3061 attaaagata ttgtatccgg ctctcgtggt gagttaatgg caggagccca aaaagcgctg
     3121 aatgccggtg aagatggagc agagcgttta ggaattgaag tggttgatgt gcgagtgaag
     3181 caaatcaact taccaaatga agtttcttct tcaatttacc aacgtatgcg tgccgagcgt
     3241 gatgcggttg ctcgtgaaca ccgctcacaa ggtaatgaga aagcagaggt aattcgtgcc
     3301 gaagtggata aaaaagtggt gctgattttg gcaaatgcga acaaaactgc ccaagccttg
     3361 cgaggtgaag gtgacgctca agctgcaaaa ctctattcag agaaatttgg taacgagccg
     3421 gaattttaca gttttattcg tagtttaaaa gcctatgaag atagctttgc cgaaggtcaa
     3481 aataatatga tgttattaaa gccaaacagc gaattcttac gctttatgca agcaccgaca
     3541 aaataattgt atctataaaa cccgatcttg tatcgggttt ttaattttca tccctattct
     3601 gatcataaca agcggtaaat tttggctgat tttttgcaaa aaatttgaaa aaattgaccg
     3661 cttgcgatat gaagttataa tgggtttcgt tattcatcct aactaaaaga ggcatttcta
     3721 tgggtaaaag tgttgctatt cttggcgctc agtggggcga tgagggaaaa ggcaaaattg
     3781 ttgatttatt aacagatcgt gtgaaatatg tagtacgtta tcaaggtgga cataatgcag
     3841 ggcatacctt aatcattaat ggtgaaaaaa ccgttctgcg tttaattcca tcgggtattt
     3901 tgcgtgataa cgtgacttgt ttaatcggta atggtgtagt gctttctcca gaggcattaa
     3961 tgaaagagat gggggagcta gaagaacgag gcattaatgt gcgtgagcgt ttaaaaattt
     4021 ctgaagcttg cccgttaatt ctgccttatc acgttgcgat ggatcacgct cgagaagcgg
     4081 cacttggtaa aaacaaaatt ggtacaacag gacgtggtat tggcccagct tatgaagata
     4141 aagtcgctcg ccgtggttta cgtgtcagcg atttattcga caaagaacat tttgccgcaa
     4201 aattaaaaga tattttagat tactacaact tccaattagt caattattac aaagttgaag
     4261 cggtagatta tcaaaaaacc ttagatgatg tgtttgcgat tgcggatgtg attaccggaa
     4321 tggttgccga tgtgacaact ttacttcacg aagcacgtga aaacggcgac aatattttat
     4381 ttgaaggggc tcaaggcacg atgttagata tcgaccacgg tacttacccg ttcgtaacca
     4441 gctcgaatac gacagcaggc ggtgtggcaa ccggatcagg ctacggtcct cgtcatttag
     4501 attatgtatt agggattatc aaagcctact gtacccgtgt aggtagtgga ccgttcacca
     4561 ccgaactatt tgacgatgta ggtgctgaaa ttgctcgcaa aggtaatgag ttcggagcgg
     4621 taaccggtcg ccctcgccgt tgtggctggt ttgatgccgt agccgttcgc cgagcagtgc
     4681 aaatcaactc catttcaggc ttctgtatga ctaaactcga tgttttagac ggattcaaag
     4741 agctaaaaat ctgcgttgcc tacaaaatgc caaacggaaa aattgtcgaa tatgcccctc
     4801 ttgcagcaaa agactgggaa ggtgttgaac caatttatga aacaatgccg ggttggtctg
     4861 aaaatacttt ccgtgtgaca aaacgtgaag atttaccaca agccgcatta gattacatta
     4921 aacgtatcga agagctggtc ggtgtgccgg tagatattct ttctacaggt ccggatcgtg
     4981 tcgaaacgat gattttgcgt gatccttttg cagcttaata aaagataaaa taaagccatt
     5041 tagtgagata gagctagatg gcttttttgt ttgaaccagt aaactttact ttggcacaat
     5101 tttgtcacaa tacagaaaat agttctttag cgtgagtttt tgaggctgtg taagtatttg
     5161 aatttaaaag aatttaatgg cacgccctaa aggattcgaa cctttgaccc acgccttaga
     5221 agggcgatag gtattttata aaaggcgttt attttaacta ataaaaacaa agacttatag
     5281 agataacccc tctatattac ctaccattat ttcacatctt tttacattaa ataacaccat
     5341 ttacggtaca tttatggaac acgttggtga tgagctagtc ttcaaaagtt acta
//
LOCUS       DANLXB010000163         5343 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLXB010000163 DANLXB010000000
VERSION     DANLXB010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5343
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1061)
                     /locus_tag="PXD41_002103"
     CDS             complement(<1..1061)
                     /locus_tag="PXD41_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL6289604.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCS"
     gene            complement(1071..2255)
                     /gene="neuC"
                     /locus_tag="PXD41_002104"
     CDS             complement(1071..2255)
                     /gene="neuC"
                     /locus_tag="PXD41_002104"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL6289605.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2256..3515)
                     /locus_tag="PXD41_002105"
     CDS             complement(2256..3515)
                     /locus_tag="PXD41_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6289606.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(3575..4612)
                     /gene="neuB"
                     /locus_tag="PXD41_002106"
     CDS             complement(3575..4612)
                     /gene="neuB"
                     /locus_tag="PXD41_002106"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL6289607.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(4612..5256)
                     /locus_tag="PXD41_002107"
     CDS             complement(4612..5256)
                     /locus_tag="PXD41_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL6289608.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1680 a         1118 c          880 g         1665 t
ORIGIN      
        1 atcgagcaaa gcgaaattag cttatttttg ccataaaaaa acaaataatt gactaaaatg
       61 aggtaaggca caaccaacat tgtcgcaatt aaaaagagaa taatgtagta ttttgttcct
      121 acaaattggc tacccagaat ccataccact aattcttccg gaataaacca catcacaata
      181 gcaggtaatg gtacaataaa taaggcatac aacgcccatt tgtggatatg gctgacatta
      241 atttttttct gctttaaggc ttcataaaaa taaggcagtg ttgctttatt taaggcttga
      301 accacaatgg ctagaatcat cgcaatttga gcccccattg catataaacc taaatcctct
      361 tcgctaaatt tatggtaaat aaatactctg tctaactgtc cttttaagaa aatactggaa
      421 tggtgcaaaa tcaacggaat accaaagccg aataaataca ataaagcagt tttatggcgg
      481 gcaaggctaa atttcttcgt ttttgctctt ttagcataca aaaagtaagc gattagaaag
      541 actaagccat tactcatcaa aatcgctaaa atccgctttt ccactaaatc ggtcttaaaa
      601 tactccatca ttgcaacggt aataactgcc gaaaaaatcg ccgacattaa ttgaatcgtt
      661 gtataagcaa gtgcctgttt ttgacactgc cttacactaa gctgtacatt caaaaacgac
      721 tggaacatcg ccccaatcgc tacataagca ataatttcag actggaaata ccagcaaccc
      781 aacaggataa gcaaagttgc acaaagagta tataaatacc ctgtactcaa gactaaattt
      841 agtgaacgct taccataaaa atagaaatag cgagcaaccg caccgtcttg gctaagcccg
      901 ataaaaatta caaataaagc agcaaaggtt tggtagtagg aaagctcccc ataacctgcc
      961 acgccgagtt tgcgtgaaaa gtagggtaag agcaagaaag gaattgactt tgacgccaat
     1021 tccccaatta aataaatcac actgtcttta actgctttca tagttgcaaa ttattctgat
     1081 tttttgaccg cttgcgagaa agcaacatca taaaatcctt tcggttgagt atggtggctg
     1141 tctgctaaga atattttgat tgcattgtaa gccttttcca tcgcgttgtc ttgaaaatat
     1201 ggatttttca tactcggtaa acggtgttgg aaatcggctg aaatcaattt ttcgatacca
     1261 tctatgatag cctgttcatt actctctaca tcaattacgc tctcatcccg tactcgccct
     1321 tgctggcgat taccgatatt tagcgtacca acaccacaac tcggtgcttc aatcaagcct
     1381 gatgagctat taccaatcaa cccatttgaa tatttaatca acgctaaata ctcttccggt
     1441 ttgactgagg tgaaaaactt aaattgattt tcatcggtgt aagccttaaa acgtgcataa
     1501 atttgctctg aattggtgtc tgaatttgag ccgataaaga cgaattggta tttgtcttta
     1561 aactgctcaa aagcattgag taacgcctca atttgctcca acacggaaac atcggttaag
     1621 gtttccgggt ggaagaccac taaaaaataa ggcgatgccg gaatccctaa tctctcgact
     1681 aattctgctt gggtcggcaa cactaaatcc aaactattct ccgcccctag agaaccagta
     1741 ttcaccacat tttcgggcag ctcgcccatt tgaatcacac gctgtctata ttcttcagtt
     1801 gaagttaaat gcaatttcga cattttggta atacaatggc gaataaattc atcgtaatta
     1861 cctaatgttt gctcaccacc gtgcagatga atcagcggaa tattatgcat cgccgcagcc
     1921 gttgccaccg ccaacatctc gtaacgatcg cctagcacaa tcaccgcatc ataacgatgt
     1981 tgctggaaat gttcgccaaa tcgatctaaa cactctgcca ttgaatgaat aatggtctga
     2041 ttattttcac tgtttaaggt aagcggaata cgagctgcaa tctcaaagcc atcttgctca
     2101 atgaccgtca ccgtattgcc atattgcgga tccaaatgca tcgcagtaac aaccagagag
     2161 aaattcacag tcggatcttg tgctaatttt tgtaataaac gctttacaat cccgtattcg
     2221 gcacgagatc cggtaatata ggcaatattt ttcatttagt tgagctcttt ttccaaaata
     2281 gcggttaatt tttcataacc ttttgcattt aaatgtaatc cgtcatcgct atagcttaaa
     2341 tccaatttgc catatttatc gctaaatgcc tgatctaagc taatccattt caccgctaaa
     2401 ttatctttaa gatattgatt taacaagcga atatcgttgt tattacgatc gactctaaat
     2461 gcagttgggg taatttccaa gaaatagaga ttaatatctc cacgaattgc tgttaattgt
     2521 gcaattaaat gattaatatc tgctagaatt ttttcatcac tccagccagc atatacaata
     2581 tcattagtac cgaacattaa aataatgtct ttaggtaaag cagaaattaa accttcatcc
     2641 aaaatcagat cactgtattg ttttgttgaa atacctgcaa ttcctaaatt attaactgcc
     2701 ttaccgttta aatgttcaat atcccaatat tcaatgatcg aatgcccgat taaggctatc
     2761 tctttcactt ctttaaagtt ctcttttttc attaaaatcg aacgtttaat ggtttcaagt
     2821 aagatttttt ctttattgcg ttgttgcaga ataaagtaga agtactcgaa atcttggcga
     2881 tcatcaatat caatagaaac gtctttatcc ataaaatagg ctagacattt cgcaccatag
     2941 aagtgttttt gtttaagata ggcttctggc ttagctgtaa aaatagctcc attcggtgaa
     3001 tattcaggat gatgcaattg gcgtgcatag ttagaataat ccaactgaaa atgctttagg
     3061 cactcgtctt cctcaatcat acgagtcaat gtcgtaggtt tatgggcatc agaaacagat
     3121 actaagaaat caaattgttc gaaatttttc tcaaattttt cacacgattc cttaatatgc
     3181 tctcctgatc tcaacggcga agttggttga agtagcataa aatagtcaaa ctctactgat
     3241 ctatattgat ttaacacatc ttcaatcacg acaaaagaac tcgccttatc actggctaaa
     3301 tgctcggcac gtttaataaa ttcaattgga taatgtgaga acaaatcaat gtattcttgg
     3361 gaatcagtac taacgataat tttctcaaat tgccccgact caatcgcagc ttcaatagaa
     3421 taggccatta acggcttacc gttggctaat aatacatttt tattcggcaa gccttttgaa
     3481 ccggctcggg ctgtaataat tgcaattttt ttcataaatt tgaccgcttg ttaaacacaa
     3541 aatgatggag ctttcatccc atcactatat tatattacat ctgattttca aaacgagaat
     3601 cttgaattaa ttgatcttct tcaaaatcct gttgtgcttc tttacctagc acatcatacc
     3661 aaaacatcgg gctaatgcca ttaccggggc gtttagtcgt aatattttcg gttgtaaaaa
     3721 tttcgccttt tttaattgga cgtgccgcaa taattgattt tcttgccaca attttatttt
     3781 ttgcttccga attagtgact aatttctcgg aagaacccag cgatttttcc accgcacgaa
     3841 tgccttcaca cagtaatttc agctcttcag gtgtaaccga agctttatga tccggacctt
     3901 caaagttttt atctaaggta aaatgttttt caatgaaggt aatgccgtaa ggtactgccg
     3961 ccaaccctgc aaaataaccg gcagagtggt cagaaaaacc taaactatag tcgccaaact
     4021 cctgttttag ctgatggaac gcatttaaat tcacatcttc ataaggtgtc gggtactcgg
     4081 tattacaatg taaaatcgta atatcttttt tcgctacacc gttatcttcc aatactttta
     4141 atgaggcttt tgtttcttca atggttgcca taccggtaga aataacgatc gtcttgcctt
     4201 caatcggaag tcgtgcaatt ttttctaaat acggcaaatt ggttaattca ccagacggaa
     4261 ttttccacac tttttgttgt tggcttgcca agaaatcaat cgactcgaaa tcgaatggcg
     4321 tagagaatac ctctaacccc aatgaacgag cgtaagcctc taatttcaca aactcctcat
     4381 aaggtaactc taatttgcgg gtcatttcta attgggaatc agcggtgccg gtcgttactt
     4441 tttgatactc ggctttaggg gcatatttag agatcaactt atccgcttta aaggtttgga
     4501 atttcaccgc atcgacacca cactctttcg ctacatcaac cattttcttt gctaacgcag
     4561 gatcgccgtt atggttacaa ccgatttctg ccacaataaa tacatttacc attattttat
     4621 atccttaata tattttgctg gaacgcctgc tacaactgtg cgaggctcca catttctaat
     4681 taccactgca ccggagccaa ccaatgcact ttcacccact cttagctgtc cgttcacaac
     4741 agaggaacta ccaataaaag catgatcttc gacaattaca tcgccattta gtgtcgtatt
     4801 ggttgaaata ttgcaatgac tgccgataaa acaaccatgc tcaaccagcg atttagtgtt
     4861 aatgatcaca ttatcgccta cagttacgcc actgtttaca attgccattt ttccaacaaa
     4921 cactccaatg cctagagtgg aatttttgga caccaatgcg gttttatcta ccacattaat
     4981 tattctacac ttatattttt gtagcttaga gaatttttct aaacggtaac tattatttcc
     5041 aatacaaata aaatagtgat aattatctcg tttagaaaaa caatcaattg ttgaagctag
     5101 aataggataa cctaagtgca cactaccttc aggcttaaag ttatcgataa gtccacaaaa
     5161 ttcatattgt tcgtgatcaa gtgaatctaa cactgatttg gcatagccac cggcaccgat
     5221 caaaatcaat ttttctcttt tagacttttg ttgcattgct atcacccatg atgaatttca
     5281 attcatatgg agtattctaa tacttttcaa gatagaaaaa tagacaagtc ttatataatt
     5341 tag
//
LOCUS       DANLXB010000164         5342 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLXB010000164 DANLXB010000000
VERSION     DANLXB010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5342
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            10..1128
                     /gene="rnd"
                     /locus_tag="PXD41_002108"
     CDS             10..1128
                     /gene="rnd"
                     /locus_tag="PXD41_002108"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL6289609.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            1185..1667
                     /gene="lrp"
                     /locus_tag="PXD41_002109"
     CDS             1185..1667
                     /gene="lrp"
                     /locus_tag="PXD41_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL6289610.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            1678..4338
                     /locus_tag="PXD41_002110"
     CDS             1678..4338
                     /locus_tag="PXD41_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL6289611.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            4490..5329
                     /locus_tag="PXD41_002111"
     CDS             4490..5329
                     /locus_tag="PXD41_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL6289612.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNPAVCN
                     TFN"
BASE COUNT         1688 a          962 c         1209 g         1483 t
ORIGIN      
        1 gaaaagtata tggagtcttt gattcactac caatgggttg aaacaaatga gcaattagag
       61 gccgtatgtg aacaggccag aaaaacaaaa gtagttgcct tagatacaga gtttatccgt
      121 acacgtacct attatccgat attgggttta attcaactct ttgatggcca acaggttagc
      181 cttattgatc caaatacgat ttctgacttc tcgccttttg tgtcattatt agccgataaa
      241 aatatcataa aagtattaca tgcctgtagt gaggatttag aagtttttga gtatcaattt
      301 aagcaattgc cagagccgat gttggatact caggtgatgg cagcctttgc cggcattggt
      361 atttcgatgg ggtttgcaaa attggtttcc cactacttaa atattgaact agacaaaggc
      421 gcttcccgaa ccgattggct tgccagaccg ctaagcgctg aacaattaca atatgcggca
      481 gctgatgttt ggtatttatt gccagtttat gagaaattgg cacaagcatt aacaaaaagc
      541 acttggcaaa gtgctgtagc agaggagtgt gtcgctttgt tgaagaaagc gaaacagcct
      601 atcaataagg aaaaagccta taaaaatatt gccaatgctt ggcgattgaa tcgggaagag
      661 ttagccatat tacaagtatt agcgaaatgg cggattgaag aagcacaaaa gcgcaatctt
      721 gccttaaatt ttgtcgtgaa ggaggcaagt ttagttcaaa tcgcaaaaag ctgtcctaaa
      781 cacacttctt cgctgttaga atttatgcac ccaaatgaag tcagaattca cggaaaaaaa
      841 atactatggt tggttgagca aggaaaagca atagaatcga atgattatcc tgaactcatt
      901 cagcgcttgg tggatgaaaa gggttataaa tattatatgc aagcgatgtt gcaaaaatta
      961 ttagaaattc aaccgcttga tatcgtaccg gagttggttg caagtaaacg tcaattaaat
     1021 cagctattta aatggtatat tgatggaaaa ccatcagaaa aaattcctga attattaatc
     1081 ggttggcgaa aaccttttgg tgaacagctg ctatcggttt tatcttaaat ttcattcggg
     1141 ttacatagac tatgtacagt ataattgcct aaaaaggagt ttatatggaa aataaaaaac
     1201 caccaaaagc attagatgcg attgatttaa aaatcttaaa cgagctacaa cgtaacggga
     1261 aaatttctaa tattgaatta tcaaagcgag ttgggctttc tccaacgccc tgcttagaac
     1321 gggtaaaacg gctagaaaaa aataacgtaa ttatgggcta taaagcttta cttaaccctg
     1381 aattacttga tgccccttta ctggtgattg ttgaaattac tttggtgcgt ggtaagcctg
     1441 atgtatttga agaatttaat aaagcgattc aacaacttga tgaaattcaa gaatgccacc
     1501 tggtatcggg ggattttgat tatctgttaa aaacccgtgt ggcggatatg gtatcgtacc
     1561 gtaagttatt aggcacaaca ttgcttcgtt tgcccggcgt aaatgacact cgaacctatg
     1621 tggtgatgga agaagtaaaa caaaccaact atttgttgtt aaagtaagga gaattgggtg
     1681 attgaacaac ttaaaccaca cctaaaaggc aaagagaact tgatcaaact tatgcttttg
     1741 ttgaccggct ttttgggcgt ttatttgcta attgcttggg caagttatag tccattagat
     1801 aatgcttggt ctgttgcaag cagcattaca caaacaacct tgaataaaac aggtcacttt
     1861 ggtgcttgga gtattgatat gctctatgca atgtttggta aggttgcagt tttagtacct
     1921 attgcattaa ttattttctc aatttatagc ttgggaatgg gtttaagtgt cgatatgaaa
     1981 tggaaaactg tcttcattcg cctagccagt ttcttattat tgatggtcgg tcttgccggg
     2041 ttatttagcg tgcttttttc aaactcagct tattatctgt cgggtggctt tgtcggtgga
     2101 gtttgggaga caatattatc tgatactatc ggacaatttg gtgccttatt gattgcaatg
     2161 ctttttacta tagctggctt atatttttgc tctgttcaat cattattgcc aatattaacg
     2221 caattttatg agtggataat ggcaaaatca gaagagagca aaacagctga atctcttcag
     2281 catttgcaaa atactgagca aaaacaaccg cttgtaactg aaaatgaagc ggtggaagtt
     2341 gtagatgacc ataaaccgca atttaccgat atctccgcct ttaaacgccc aaacattagt
     2401 ggtttaagac actcggaaaa tgtagagata gataaccgag aaatgtatga aattgaaaga
     2461 gatcttgagc taccgactat taatatttta atacagcctg atatggttaa ccaagttgcg
     2521 gaacaagcta catcgggcta tgagttacca aacgaagaat ccaatgtatt gcaaatgccg
     2581 accattcgct taaataccgc tatcgaaaac gaggtggata caatcgaaaa cagttcatca
     2641 ttggaagacc tgaaaatagc agaatctatg ttacctcaaa ttcagcttga taatgatatt
     2701 gaagatactg aagaagctat tgacgatgtg cgtgaaatta caccggaatt tatggtaacg
     2761 ccgcccaagg cgatgaaaga tgtgtctgag cagccagcct atccaaaagg ctatggtgat
     2821 acgttaattc acccgttgtt acaacgaaaa gtgataaccg aaaaaccgac aacaccattg
     2881 ccaacgctag atttgttgga taaagcaccg attcaaagcc agcaaattac cgaacaggaa
     2941 atacgagaaa cctctgtgcg gctagaagca gaattagcaa actttggcgt aaaagctacc
     3001 gttgaagatg tattggtcgg tccggtagtg acccgttatg aaatccaacc ggctgccggg
     3061 gtaaaagcct ccaaaattac caatttagcg agcgatatag ctcgtggctt aatgtttaaa
     3121 gcgattagga ttactgaagt tatcccaaac aaaccttata tgggtattga aactccgaat
     3181 aaacaccgtg aaacagtgtg gttgcgtgat gtgctagaca gcgatgaatt ccgcaatacc
     3241 actgcaacat tgccaatggc actaggtaaa gacatcagtg gtgagcctgt ggtggtcgat
     3301 atggcgaaaa tgccacactt actggtggca gggcagaccg gtgggggtaa atcggttggg
     3361 gtgaatacga tgattttaag tctattgttc aaacttacac cagaacaagt ccgctttatt
     3421 atgattgacc ctaaagtggt ggagctttcc atttataacg atattcctca cttattaacg
     3481 ccggtagtaa ccgatatgaa aaaagccgcc aacgcactac gctgggcggt ggaggaaatg
     3541 gaacgccgtt atttgctggt aagccattta caggtgcgta atattgaagg ctataatgcg
     3601 aaaatcgacc aagcggcagc gatgaatttg ccgattccag atccaacgtg gcgaccgggc
     3661 gattcaatgg atagccttcc gcctccgcta caaaaattaa gctatattgt gctgattgtc
     3721 gatgagtttg cggatttaat gatgtctgcc ggtaaagaag tggaagagta cattatgcga
     3781 attgctcaaa aagcccgagc ggtgggaatt cacttaattc ttgctaccca acgtccgtca
     3841 accgatgtga ttaccggcgt gattaaagcc aatattccaa gccggattgc gtttacagta
     3901 gcgagccaaa ttgactcaag aactatttta gattcaggtg gagcagaggc attattaggg
     3961 cgaggcgata tgctctattc aggagctggc agcccggata ttattcggat acacggtgcg
     4021 tttatgaaag acgaagaagt gcaacgcgtg gcggataatt ggcgggcaag aggaaaacca
     4081 aactacttgg aaagcattgt ggaatcccgc tcggaagagg ctgatggcaa aaacgatggc
     4141 ggaacgggcg atttagatcc gctatttgac gaggttgttg aatatatcac ggaaaccggt
     4201 tcggtctcta tcagtaatat tcaacgccgc ttctcgcttg gttttaaccg tgcggctaga
     4261 attgtggatc aaatggaagc tcaaggcatt gtttctgagc cacttaaagg tggcaaacga
     4321 gaagtgctgg cgaggtaaaa cacatacaag cggttagatt tctgtgaaat tttgcaaatt
     4381 ttgacaaaaa tctaaccgat tgtatttatc taatgctaaa taagcatagt ataaggctag
     4441 tctttgggct aaaattaacg caatttttac atcttttaag gttgaatata tgcgattaga
     4501 tgatattaaa gaaagtaaaa atgttgaaga cagaagattc aacaatgtgg gtagaactaa
     4561 ggttggtaga gggaaaggtg gaatattaac ctttattatc gtgcttgttg gagcttatta
     4621 tggtgttgac ttaacaggtt taatgggcgg tggcgtagaa tatgaggagc agacatcagc
     4681 attaaatgaa agtgaagaaa aacagctaag aaccttatcc gctaaagtat taacgaccac
     4741 agaaaatatt tggacttcct acttccagca aaatggtcta acttataaag agccgtcttt
     4801 ggtgctttac cgtggggcaa ttcaaactgc ctgtggcacc ggtcaatctg caatgggtcc
     4861 tttctattgc cctgtcgatc aaaaggttta tttagattta tcattctatg atgatatgcg
     4921 taaaaaatta agagcatcgg gcgattttgc cttctcttac gtgattgcac acgaggttgg
     4981 ccaccacgtc caaaatttat tgggcataac aagcaaaacc caacgggctc aaatgaaagc
     5041 ctcatctaaa gccgaagcaa accaaatttc agtcaatgta gaattgcaag ctgactgttt
     5101 tgccggcgtt tggggacacc aactcgcaaa agccaaccga ttagaggaag gcgatgtgga
     5161 agaagccttt aatgctgccc aagcagttgg agatgaccga ttacagcaac aaagtcgtgg
     5221 ctatgtcgtg ccggatagct tcacccacgg ctcatctgca cagcgtttgg cttggtttag
     5281 aaaaggttta accacaggaa atcctgcagt ttgtaataca tttaattaaa aaataattaa
     5341 at
//
LOCUS       DANLXB010000165         5336 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLXB010000165 DANLXB010000000
VERSION     DANLXB010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            88..819
                     /locus_tag="PXD41_002112"
     CDS             88..819
                     /locus_tag="PXD41_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6289613.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEAQGELVAVVHSHPEPNGKPVLSTLDRKMQVQTGLDWWLVHNQKIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGDQMVVHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLAEKLDFDGILNDIAVNN"
     gene            1088..1717
                     /locus_tag="PXD41_002113"
     CDS             1088..1717
                     /locus_tag="PXD41_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6289614.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            1727..>5336
                     /locus_tag="PXD41_002114"
     CDS             1727..>5336
                     /locus_tag="PXD41_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289615.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKY
                     SSQYLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAV
                     AGISFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEI
                     YDLAPILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYD
                     LLNDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQ
                     VTYSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKRE
                     KETITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASY
                     FTYINGEATHSSKIQSVNGKEITLDSTPTGLETYGVWSLSTKQISSGLYRSISIVENA
                     DGTNTITALQHEPQKEAIVDNSAHFVETARTLYKAPQINAVEVSTGYDGKLYITGDIS
                     SGDGKLTYDIKITKDGNLYQYKKGLSDPNIELSDLPNGDYTVIIYGKNAKGQIVTEKT
                     QTFTIDRPPAPTGVVVTGGLGQITLEWDWVNEVTQTEIFAAETDNFALAKKIAKVTAR
                     TYAHTLKGNKVVRYYWLRHTRGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIV
                     NEVFDVAAPARGLELVKTVANLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAED
                     VTGKLSKSKIDTSLISQLTGADNTANLARRLAETAQSNINQEITNRQDAVTAEANNRT
                     KAIQAESANLTKKIQAEATARGAAVTQLQNVDAQQAQLISAVTAKADNALSGLEEEKT
                     ARANADKAESQAREALTARMGAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIG
                     GRNLLRDSEFNAYNKWGSPQIEFAENANRRTIKVTSTGTNGPVGIVSSNRHSTSYFQQ
                     GETYTLSLFARGSKALDYLYLMRQDGNNVRLPVINVASETEFNHYKLTFKAPFTTQQG
                     YVLIGFRQTSTEQFVEFHSVKLEKGNVATDWTPAPEDVESAVSAVSADLTSYKQTQA"
BASE COUNT         1676 a         1085 c         1213 g         1362 t
ORIGIN      
        1 tgcagccatt gcctgaacgg ttgtgaattg cgaggcaatc agcgtaattt tggtggattt
       61 gtatcggtga ataaattggg gtaatgaatg gaattggaac aacaaataat cgactacgcc
      121 ctccaacacg aaccgcacga aatgtgcggc tttgttgttt ttgacggcaa taaaaatcga
      181 tttatccctt gcgaaaacca agcggaagac aaagccaatt actttgaaat ctctgatctt
      241 gattacatca aagcagaagc acaaggcgag ctggtggcgg tagttcattc acaccctgag
      301 ccaaacggca agccggtact ctctaccctt gatcgcaaaa tgcaagtaca gaccggttta
      361 gattggtggc tggtacataa tcaaaaaatc cataaattca ggaatgtgcc gcatttaatc
      421 gggcgtgagt ttaaacacgg tacaatggat tgttacacgc tctaccgtga tgcctatatg
      481 cttgccggtt acgagatgga cgagttcgag cgacaagatg actggtggca taccgggcaa
      541 aatctctatt tggataatat tcaagggcaa ggctttgagc gagtggaaac cccacaaatc
      601 ggcgatgtga ttttaatgca agtaggtgct gatgtgccga accacgctgc catttacatt
      661 ggcgatcaga tggtagtcca tcatagcccc aaccgattat ctaagcgtga tttatacgac
      721 ggctactggt tacgccatac ccacagtatt tggcggcata aactggcgga gaagttagat
      781 tttgatggca tattgaatga tattgctgta aataactaac aaaaaatgac cgcttgtaac
      841 aaaaacaaac cccgaagcgt ttgcagcact tcggggtttt tcatatccac ttacctaact
      901 aagaggacat aaattaaatg aatgataaac gatttacatt caaatttcta ggagttctta
      961 tggaagcaat aaatattacc ccaaaagaaa tcagaaaaac aatgtggaca gccgcaataa
     1021 ttctcttttt gtttgcgttc atctggaaag cccctgaatt tatcactgct attcgttggt
     1081 ggtaactatg attacagtta aattttacgg acaccttaaa acattcggca cagattttaa
     1141 aattttagtt aaagacatcg ctgaggcaat tcgtgctctg tgttcacagc ttaaaggatt
     1201 gcgtgaagcg ttgcgagacg gtgtttataa agtccgtatc ggtaagcagt atttagaccc
     1261 atcagccctt gaaaaagggc ttttttattg cctgaagaaa gggcaaacca ttcattttac
     1321 ccctgttgtc aaaggagcga aaagcggtgg tatttttcaa gcggtgttag gtgtggcgtt
     1381 aattggggct gcatttgcgt taggtcctat cggcttagga ttggttggct ctgctacagc
     1441 aatgacagtt ggagcaatgg gggcatcaat gttactagga ggagtttccc aaatgctcac
     1501 caaaatgcca aaagccccca caatgggtaa tgaaacagaa aaagaaagct caacggcttt
     1561 ttcaaattta aataacttgg tggctcaagg caaacctgtg ccgttggctt atggtttgat
     1621 tcgtaccggc tcgctggtga tatcgcaggg agttgagacg atcaccatta aagaaaacca
     1681 accggcaagc aacaagaaaa ccggctttag aaaataaggg ataattatgc gtatttacgg
     1741 agcaaaaggt ggtggcggca gtagccatac cccgattgaa gcaccggaaa ccggtcgctc
     1801 aaaacagatt gtgaatattg tggaattgct gtgcgagggc gaaattgaag gcttggttga
     1861 tggctttaaa tcgatttacc tagacggcac gcagatccaa aacgatgacg gcacctataa
     1921 ttttaataat gtgagcggtc agctaaatgt cggtacgcaa gatcaagatg tgttggacgg
     1981 ttacgatagc tcacagaatg aagtgaatgt gggtgttgag attaagaaaa agaatggggc
     2041 tattgtccgc accgtaactg atgaacgaat taaccgcttg cgtttaacgt tgggagtaag
     2101 gtcattattc caccaaaata atcaaggcga taccaatacc accaatgttg atttaaaaat
     2161 cacgattggc acacggcaat attcgcatag ctttaacggc aaatacagct cgcaatacct
     2221 tgaatctgtg gtgtttgata acctgccgcc tgtgccattt aatatctcag ttgagcgtct
     2281 aaccgaggat agcaattcgc aacgcttaca aaacggtaca atttggagta gttacaccga
     2341 aattatcgat accgagttta cctaccctaa ttcagcggtt gccggtatca gttttgattc
     2401 ggagtatttt aataatatcc cgacccgaaa ctacctaatt aaagcgaaaa aagtcaaagt
     2461 gccaagcaat tatgatccag ttaaacgcac ttacaccggc ttttgggacg gcacatttaa
     2521 agttgcgtgg acgaacaacc ctgcttggga aatttacgat ttagctccga ttttaagcaa
     2581 aatgcttggg gttgaaatca gttttgacaa atgggcgttg tatgatgttg ctcgctattg
     2641 cgatcaactt gtgccggacg gtatgggtgg aatggagcct cgtttcacct gtaacgtatg
     2701 gctcacggaa gttaaaactg cctatgactt gttgaatgat ttctgctcgg tattccgtgc
     2761 gattccgatt tggaccggaa cagaagtatc ggtcattatc gaccgtccgc gtgatccggt
     2821 ttggacttac acaaatgcta atgtagttgg tggatttgaa cgatcctact ctgctcgcaa
     2881 atcacgccat aatgcagtgc aagttactta ttcggataaa acaaatggct atgaaagtgc
     2941 gattgaatat gtctctgatg acgaggaaat caaaaagcac ggcttaaatt taagtcaaat
     3001 tactgctttc ggttgtacct ctcgggggca agcacaccgt accggaaaat ggattttgga
     3061 aaccgaaaaa cgggaaaagg aaaccattac ttttaccgtg ggacgtgagg gcttaatgca
     3121 cttgccgggc gatattattc gtgtggcaga cagccattat gccggtacgg aaattggcgg
     3181 acgtgtactg gcgattaatg ggcgaaaagt cacgttagat cgtgaaatta gcattgataa
     3241 cgccagttat tttacctata tcaacggtga ggcaacgcac tctagcaaaa tccaatcggt
     3301 aaacggcaaa gaaattacgc tggatagtac accaaccggc ttagaaacct acggtgtttg
     3361 gtcgttatcg actaaacaaa tcagctctgg attatatcgc tcaatctcga ttgtcgaaaa
     3421 tgcggacggc acaaacacta tcacagcgtt acaacacgaa ccgcagaaag aggcaattgt
     3481 tgataactcc gctcactttg tggaaacggc tagaacactc tacaaagctc cacaaattaa
     3541 cgcagtggaa gtctcgaccg gttatgacgg taagctctac attaccggtg atattagctc
     3601 cggtgatggc aagctaacct atgatattaa aattaccaaa gatggcaatt tatatcaata
     3661 caaaaaaggc ttaagcgatc cgaacattga actaagtgat ttacctaacg gcgattatac
     3721 cgtcattatt tacggcaaaa acgccaaagg gcaaatcgtc accgaaaaaa cacaaacctt
     3781 tactattgat cgacctccag ctccgaccgg tgtagtagta acaggtggat tagggcaaat
     3841 taccctcgaa tgggattggg taaatgaggt tacgcaaacc gagattttcg cggccgaaac
     3901 cgataatttc gcccttgcaa aaaaaatcgc aaaagtgacc gctagaacct acgctcacac
     3961 actaaaaggt aacaaggttg tacgctatta ttggctacgt cataccagag gcattaatgt
     4021 cggaccgttt tatcaacaac agggggtaag aggacaaaca gcggttgatt tggatgctcg
     4081 attaaccgaa ttaaacactc agttatcacg caatattgtt aatgaggttt ttgatgttgc
     4141 tgcaccggca agaggtttag aattagtgaa aacagtcgct aatttgaccg acaaaggtac
     4201 taaactggcg tcatctcaag tttacaatca ggctgacggc aagctctata cttggaacgg
     4261 tacagcatac tcagctacag tggctgcgga agatgttacc ggcaaattat caaaatctaa
     4321 aattgatacg tcccttattt cgcaattaac aggtgcagat aacaccgcaa atttggcaag
     4381 aagattagcg gaaacagctc aaagcaacat taaccaagag attactaacc gacaagatgc
     4441 cgttactgcc gaagcaaata accgtactaa agccattcaa gccgaaagtg cgaatttaac
     4501 gaaaaaaatt caagctgaag caaccgctcg tggggctgct gttacacagt tacaaaatgt
     4561 tgatgctcaa caagcacagt tgatttctgc tgtcacagca aaagctgata atgctctttc
     4621 aggcttggaa gaagaaaaaa cagcacgagc aaacgccgat aaagcggagt ctcaagcacg
     4681 tgaagcatta acagcaagaa tgggagcagc tgaaagcaat atcgtaacta ttcaacgtac
     4741 ggtagcaaat aatgcccaaa gcattagtga agtcagtcag aatttaaatg ctaagattga
     4801 taatattaat atcggcggtc ggaatttatt aagagacagc gagttcaatg cgtacaataa
     4861 atggggtagc ccacaaattg aatttgctga aaatgcaaat cgccgaacta tcaaagtaac
     4921 ctcaacaggt actaacggtc ctgttggtat tgtttcatct aatcgccatt ccacatctta
     4981 tttccaacaa ggagaaactt atacactctc attatttgct cgaggaagta aggcactaga
     5041 ctatctctat ctaatgcgtc aagatgggaa taacgttaga ttaccagtga ttaacgttgc
     5101 ctctgaaact gagtttaatc attacaaact cacgttcaag gctcctttta ccacgcaaca
     5161 aggttatgtc ttaatcggtt ttcggcaaac cagcacagag cagtttgttg agtttcacag
     5221 cgtcaaactt gaaaaaggca acgtagccac agactggaca ccagcaccgg aggatgtgga
     5281 gagtgcggtt agtgctgttt cggctgattt aacgagttat aaacaaactc aagcgg
//
LOCUS       DANLXB010000166         5175 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLXB010000166 DANLXB010000000
VERSION     DANLXB010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5175
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..519)
                     /locus_tag="PXD41_002115"
     CDS             complement(<1..519)
                     /locus_tag="PXD41_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6289616.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEYK"
     gene            618..869
                     /locus_tag="PXD41_002116"
     CDS             618..869
                     /locus_tag="PXD41_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6289617.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1065..1265)
                     /locus_tag="PXD41_002117"
     CDS             complement(1065..1265)
                     /locus_tag="PXD41_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6289618.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1324..1836)
                     /locus_tag="PXD41_002118"
     CDS             complement(1324..1836)
                     /locus_tag="PXD41_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL6289619.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXD41_002119"
     CDS             complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXD41_002119"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL6289620.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3062..3202)
                     /locus_tag="PXD41_002120"
     CDS             complement(3062..3202)
                     /locus_tag="PXD41_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289621.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3296..3868
                     /locus_tag="PXD41_002121"
     CDS             3296..3868
                     /locus_tag="PXD41_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL6289622.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3970..4188
                     /gene="cspD"
                     /locus_tag="PXD41_002122"
     CDS             3970..4188
                     /gene="cspD"
                     /locus_tag="PXD41_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL6289623.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4278..>5175
                     /locus_tag="PXD41_002123"
     CDS             4278..>5175
                     /locus_tag="PXD41_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6289624.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVK"
BASE COUNT         1483 a         1095 c          957 g         1640 t
ORIGIN      
        1 tttatattca atatttttaa aacgctcatt tgtttcttta gctgtaatct taccaagcag
       61 atttaccaga ttattacctg cctcatcgct tgtaccggca gtgacacgag cctgttggtt
      121 tgcaattaaa agtcgctcaa agccctcaat actactcaaa ccggcttgtt ttgcagctgc
      181 catttgttga ggcaaccaac ttgccatata tgcaagctca aaactacctg cttgcccggc
      241 tgcaacagcc atatccaatg cccgcccaat atcctcttct ttgatgccaa attgttgcat
      301 agaggagatc gcaatttttg ccatatcctc cgagcttgcc cctgttgcca ccgccccttt
      361 ctgcaaagta ggtaatagac tcattgcggt ttcggctttg actgtaccgg aggcaatgag
      421 cgtatcaagc gtaactaacg catcctcttt tgtgccaccc ccaaccttat ccgccttttt
      481 atcaagtttt tggtttactt ctttgagcga gtctaaaata tcgtccagct tttccttaag
      541 agccttattc agacagccta ttaagcctag gcgtaaaagc ccataattgt ggcgtatttt
      601 gggctaatgg cacatcaatg gccccgacta tcagcgatgg tgatcaaatg ttagtggatt
      661 tcagcaaaaa agaagcccgt ggagacgata agatttatct tgtgcaaaat ggtgaaagcg
      721 tttgggtaaa acgtgtaaga aaagtgtggg actacgttga attgattagc gataatgagt
      781 cctaccgccc aatccgaatt acagcagacg aagctcaaaa cttacaaatc atcgggcagg
      841 tagtccacat cggacactct ttagtttaaa acagatttaa aatagtttta aaaccgatca
      901 aacctatgca aaaaatatcg caaaaactgc ccattttttt ctaatcctgc tcattttgtt
      961 ttttgcatag ccccaaccaa acaataacgg cgaacccttg tattcacggg gctcgccgtt
     1021 atttttccgc ccaaattttt ttctttctct ctatgcaaaa aagatcagta ccccacattt
     1081 tcaaccgctt gtagctcaca aagccaacct tgctctttgg caagcagttc aaaatcggta
     1141 aggctactct gctgattgag taaaatttcc aagctatcgc cctttttaag atcgttcatc
     1201 gctttttttg ccattaataa cggcaagggg caggcatagc cggttaaatc taaaacatat
     1261 tgcatagcga aatagggaat aaagaaaaag ggcgaatatt gaaattcgcc caatcacaaa
     1321 agattagagt ttacggcggt ctgccatcac tttgcccata gccgataatt tgtcttgagc
     1381 taaatgctct cgcccaagct caaagagtgg ctcttcaatc gcaatatgca catcataacc
     1441 tgccacaaaa cgctcaatta agtctctatc cacattttca cgtttacctg cgagcagatc
     1501 ttcaagctgt gccgacaaat agtcccaatt tttatgtaaa tgaacgtgct ggcgttccag
     1561 ttcgtctacc tctgcttgag cttgtggttg caccttaata agctcaggga agaaatcatc
     1621 ttcttcatct tcgtgatgta aaggggcaga aatgttgaag tagttcaaaa tctgctgcac
     1681 gtcattcttc actgcttggt ttaccccgtt tttctcaagg taatccggca aaatttgcaa
     1741 ctgtttacag aaacttttta ctttgctgtg gcaagcataa agcatatcaa tcggctctgc
     1801 ccagcttgca aaggtttgtg gttcaagttg ttgcatatac actccttgtt atttctgttc
     1861 ttttacttca gattgtaaag gtggcacttc tttgccaatt cgggcataaa attccactac
     1921 aaaatcatca aaacgatctt cttcgatggc ctggcgaatt tctgccatta ggcgttgata
     1981 gtagcgtaaa ttatgaatgg tgtttagtct tgcccctaaa atctcgccac atttgtctaa
     2041 gtgatataaa taggctttgg tgtagttttt gcaagtgtaa caatcacatt caggatcaag
     2101 cggtgtggtg tctgcacgat atttcgcatt acgaattttt acaatgccgt tggtcacaaa
     2161 taaatgtccg ttacgggcat tgcgggttgg cattacgcag tcaaacatat caataccacg
     2221 gcgaacccct tcgactaaat cttctggctt gcctacaccc attaaatagc gtggtttatc
     2281 tgccggaatt tgcgggcaaa cgtattctaa aatgcggtgc atatcttctt taggttcacc
     2341 taccgccaag ccaccgactg catagccatc aaagccgatt tcaactaatt tttccaccga
     2401 gactttgcga agttcttcat aaataccacc ttgaataatg ccaaataacg cattcgggtt
     2461 ttcaagttca tcaaagcgat cacgagaacg tttcgcccaa cgtagtgaca tttccatcga
     2521 tttttttgca taatcaaagg ttgccggata aggagtacat tcatcaaaaa tcattacaat
     2581 gtctgatcca agatcgtatt ggatctccat tgatttttcc ggcgaaagga aaattttctc
     2641 accgctaatc gggttttgga aagttacgcc ttcttcttta attttacgca gtttacctaa
     2701 gctaaaaact tggaaaccgc cggagtcggt taaaataggg ccgtgccatt gcataaaatc
     2761 gtgcaagtca ccgtgcatct tcatcacttc ttgccccggt cttaaccata aatggaaagt
     2821 gttgcctaat aaaatttgcg cccctgtcgc tttaacttct tcaggagtca ttccttttac
     2881 cgtgccataa gtgccaacag gcataaatgc cggtgtttca acgtgaaatt cgcctttcgg
     2941 gcggttaaaa gttaaacgcc cacgacgagc gttaccactt gttgttttta attcgtactt
     3001 cattttaatc cacaaataaa cagttcgtga aagcggtcaa aaaccaccaa aaatttacca
     3061 attagaatcg aaagtcggtg ccgaccccta agccgattcc aacgccgtta gagccaccac
     3121 cggctccaat actgccaccc acaccggttg atgagcaagc agctaacact aaaatgccaa
     3181 cgcataataa gagttttttc attttttgct gtcctaaacg aaaaagagag tctatgatag
     3241 acccaatgta ttctaacctg tttaatggat taaacctaat tttaaagggt aaattatgaa
     3301 aattttacgt aaattcgctg ctgtatgcgt tgtctcaatg gctatgctct ctgctaacgc
     3361 taatttgctc actattagcg agcaggaaat caacgactat ttagccacca aattagctga
     3421 aaaaattcct ttaaaagata aagtcggtat tcctaaatta tttgaattgg attatcgcct
     3481 gcattcactt accagccaaa ttggcagaac cgaggaaaaa aaagtagcta tttctggcgt
     3541 tgttgatgga cttttaaacg caaaaggcaa gaaatatgct gcctctatcc atttaaatat
     3601 ggataccacg ccttattatg atccacaaaa aggggcatta tttcttaaag atgtcagatt
     3661 gttaagttgg tctgcaacac cggctaaata tcaagcagag ctgcaaatgt ttttgccggt
     3721 gttggctgat ggattaagta gttttttaaa cagtacgcct gtttatactt tagatgaaaa
     3781 taaaacaaaa gaagcaatgg tgaaaaagtt cggcaaagcc attgtagtag aaaatggtaa
     3841 tatcaagcta gaaaccacta ttttttaaat aattttgtga tcttcgtcta atttttacac
     3901 tttgatagtt gagcttttac gcgttttatt tacaatccaa atatcgccat tcattatttg
     3961 gagagttcta tggatatcgg tattgttaaa tggtttaaca atgtaaaagg atttggtttt
     4021 attacatcgg atgtatgtga aggagacatt tttgctcatt tttctgaaat tcaagcagaa
     4081 ggttatcgct ctttaaaagt cggccaaaaa gtacagtttg aattagttca aggagagcga
     4141 ggtgcctcag cctcaaatat cacgcctata agcgaaaaaa cgttataatc cgtcgttaat
     4201 aaaattattg ttataaccat actttattag attttaaagc tcagctttta cagctgagcc
     4261 atttttgctt tttgaatatg ccttcctctt atcaattagt cttaattaac ctactttata
     4321 tcttcggtat tggtctaaat attgtactgc ttaggtttct cagtttgcat tttgacccat
     4381 taaataataa cggtatacgt tttcttgttg gtgggttcac cttattattt ttcattttat
     4441 ggagattccg cacatcgctg tctcagctga ttaaaactcc aaaattgatt gcgatttctc
     4501 tatttgtcgg gttaatgatg tccgcaaata tgtatttttg gctaaaaggg gtcaaaatta
     4561 caaatgctgt taccgtctct atttttgggg tattagctat gccatttggt gtgattattg
     4621 ccgccatatt ctttcaagat gaaagagaac gcattaaaag caaagctttc tggttcggct
     4681 caattttaac gatcatcggt tcactcggat ttatttggca cgggaaaaca ctctcgattg
     4741 gcgaaggatt tattcttggt tctgtgttct tatttttgtc gatcattatc cgtaatatac
     4801 aaaacctagt tgtaaaattt gctcgagaac tgaacgtatt aaccctaagt tgtgtaacat
     4861 ctttaactac ttcactctcg agtctattac ttagccaaca agcaggtaaa tttaatgagc
     4921 tttttactgc accaaactgg ctactattct ctctgatggt tgctggtatt tatgcgatta
     4981 tgatcggaat ggtattaacc tttcacatta tccaaaccca aggactgata acctaccaag
     5041 tattggaact attaatgccg gtttcaacag ccatcattgc ttatatttta ctggacgaac
     5101 gtatttccat tgttcaaatg ggctttgctt gtattgtgat tttaggctca agtatcgcct
     5161 taaagttagt aaaat
//
LOCUS       DANLXB010000167         5087 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLXB010000167 DANLXB010000000
VERSION     DANLXB010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5087
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(345..911)
                     /locus_tag="PXD41_002124"
     CDS             complement(345..911)
                     /locus_tag="PXD41_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289625.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQKKFDLVN"
     gene            complement(1444..1770)
                     /locus_tag="PXD41_002125"
     CDS             complement(1444..1770)
                     /locus_tag="PXD41_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289626.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1818..3449
                     /locus_tag="PXD41_002126"
     CDS             1818..3449
                     /locus_tag="PXD41_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL6289627.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            3364..4257
                     /locus_tag="PXD41_002127"
     CDS             3364..4257
                     /locus_tag="PXD41_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6289628.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            4250..>5087
                     /locus_tag="PXD41_002128"
     CDS             4250..>5087
                     /locus_tag="PXD41_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6289629.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLT"
BASE COUNT         1679 a          972 c          958 g         1478 t
ORIGIN      
        1 ccacaactag gctctaatat gctagatgga ttaattccca aaacccattt tgtaatataa
       61 tctgctaaat attgaggggt ataatatcct ccccttaact tttgttctgt ctgttcatct
      121 ttaaatttca ttgttaataa ctaattttcc tatatgtatt tctaccacaa tatcactttc
      181 aatatatctt tggtatataa ttaaatcact ttaataaata aaacaactat ctattaaaat
      241 gaatagttgt attctaacag tagttaccct aaatctacaa atatcaagtg taaaaaaata
      301 taaaagtcgg caataacatt attttataat aactaatgtg aattctagtt cactaaatcg
      361 aatttctttt ggtaaatctc attcctttct aatatatagc gttttacctc atcatcgtaa
      421 aaccattcaa gaaagttatc aacatcttca atgaactttt ctacctgttg ctgtgcatat
      481 gctatcgtat cggtagggaa gatttgataa tgaaacggat tgcgttcatc ataactctgc
      541 catttgtcat aatcggcttg tttacgccgc gcttctcttg cctcccagtc gattttttct
      601 tccacttgat attctggctc tggcttatta tacaaaatac ggatgagttc cttttcttca
      661 tcctcaagca gaatatcttc aaaccagatt tcagaaaata ggctgcgctt gaaaatgaaa
      721 gacttcatca tttcccctcc acacgccaat aagtttccca atgcttcccg tttcgctcta
      781 tcttttgccg aaaatatcca gtttttcgat acaaaacagt acattggcat gtcatgcaaa
      841 taggttcttc gtgaaatggc taattcagga aaatgaggaa taagctgtaa ccccattatt
      901 aagccttcca tactgcacac gatcttactt aattgtccgt aatcgcgtaa aaaagcaatg
      961 tcagttttta tcaaccacaa cgataggctg actaatatga acataaagat gagataatag
     1021 atcggtttta aggctaaggc gcgccgacaa agccacatta agagtggaat cgtaacgaga
     1081 tcaaagaaaa atgatgagtc tatgatgatt tccttatgtg agttgatgaa taatcaggca
     1141 tgaaggaaac cttaaaaagg aaaagtccct tcattaccac tttttaaaac cttttaaggc
     1201 ttaaaaatca aaagtcgtaa tgaagggact attgtccgtg ggcaaaaagg tattagttat
     1261 agggggcttt gtcaagcgaa aatttactgt gcattttctc gccaaaactg atttaagcct
     1321 tgataaaatc tcgaaagtac cttgtcaaga aaaatctttt tagtggtttg attgctagtt
     1381 ttttgagcaa aactatgctg taatgcagta aaaatacagt ttctatctgt gtttggaatc
     1441 cagttacaaa ttggagagta atacaaagca tatttgcttg agcatctcag catcttggta
     1501 gcattcttct gattttgaaa tatcccaaac aagctgccgt acacatgatg aaattctcat
     1561 taacgccaat aaatctaggc tacttggcaa tcttttccct gcaacccaat ctttaactgt
     1621 tttctcactc acatctaatg cattggcgac cattttcccc gtccaatatt gagcatgcat
     1681 ttcctttcgt aacgcaattg caaaccgctc tttcgtttca atctcattga gtgtaatttt
     1741 gggtaagatt ttaccctttg agtgcaacat atttcctccc gattccttta tattggtgta
     1801 gataaggagt cattagaatg gttacacgta caaagaatca acctaaaaat caggcggttt
     1861 cctacattcg aatgtcaacg gaacaccaag aattttcacc agaccttcaa cgttgcttta
     1921 tcgaaaatta tgctaaagaa aatgggctag aaatcattag agaatacatt gatgaaggaa
     1981 aaagtgggct aaccgcagaa caccgcccac aattcctttc aatgatacaa ctcgtacaaa
     2041 gtggacaagc cgacttcgat catattttgg tgtatgacgt gagtcgttgg ggtcggttta
     2101 tgaatattga tgaatcgggg cattatgaac tgatttgtac ctaccaaggc attaaagtcc
     2161 actattgcgc cgagccattc aaagggaatg atattgcctc tcaaatatat aaaaccatga
     2221 aacgtttgtc ggtaggagac tactgtcgtg aactcggagt gaaagtattt aacggtcaaa
     2281 aaaatctgat ccaacatgga tttagacaag gtggggtagc tggatttgga ttgcgtagga
     2341 gattgattga ctgtcaagga aaccctaaat ttgatctcca acgtggagat agaaagagcc
     2401 tacaaaccga cagagtgatt ttggttgcag gcccaaagga agagcaggaa attgtccgac
     2461 aaatttacca tgattttgtt tatcaacata aaacggaaca acaaattgct gatagcttaa
     2521 atgcacaagg cattgttact gatagaaata cagcatggac gaaaggcgta gtacatcaaa
     2581 tccttattaa cgaaaagtat gtcggccaca atgtttggaa taaacgtagt gcatcaaaaa
     2641 cacgcgaata taaaggtaaa aaccccgtag aagagtgggt gcgagctgag aatgtatttg
     2701 aagctatcgt gccacaagcc ttatttaatg cagcccaaac cattattcat caacgctccg
     2761 cccgattatc tgacgatgaa atgttagagc aactcaagct acttttgaaa gagaaaggga
     2821 agctgtctgg cttgatcatt gatgaagccg aaaattgtcc atcaagtagc gcgtacagta
     2881 gccgatttgg aagcctactt aacacatata ctttaattaa ctatgaaccc gaacgggatt
     2941 accactatgt agagatcaac cgattactcc gtcagcagca taaaaatttc gtacaacaaa
     3001 cacttgatac cattattgaa ttggggggag tggttttgag cgatgatgta accgatttag
     3061 tccacatcaa taatgaattt accgcctcaa tcgtattaag tcgttgtcgc ctaacgccat
     3121 caggaagcaa aagatggttg atccgatttg ataccagttt aaatcccgac ataacaattg
     3181 cagtgcgcat caatgagagt gccacagaaa ttcttgatta ctacctgctt cccacaactg
     3241 aaaaggtaaa tgaaaaacta cgattggctg agagtaatcc tgccgaactt gaaatctacc
     3301 gccatgataa tttagatcgc ttttttatta tggttgaacg tattttagtc aaggagttta
     3361 tctatgcaaa acgacaccat tcaaattctt cctatcgaca aaattcgggt actcaatccc
     3421 agaacgcgca atcagaaagt ctttgctgat ctggtcgaaa acattgcaac gattggtctc
     3481 aagagaccta ttaccgtaac gccatctgtc gatagtgctg aatattatga tttgttatgc
     3541 ggtcaaggtc ggcttgaggc ttgtcaggtg cttggtgagc tattcatacc ttgtcgcgtt
     3601 gtgaacgcaa atagtgaaga aagctacttg atcagccttg tggaaaatat tgccagacgt
     3661 cagcattcct atatggagct gctttcaggc atcaaaatac tcaatgatag aggttataag
     3721 cccgttgata ttgctcgcaa aatcggtttc tcaaaaagcc atgtcaacag tatcttacac
     3781 ctcatcaatg ctggggaaga gcgccttatc aatgcggtag agcaaggaat tttacccatt
     3841 accatcgcta tttcgatttc tcgttcagac gatcaggaag ttcaaaaaca actcgcggaa
     3901 ctttacacca atggtacatt gaaaagcacc gatattgcca aaatacgtaa cctgatccac
     3961 cgtagaaatc ttgctggtaa gaaagccaat acaggtattt ctggaagtat tagatcatct
     4021 atttataatc ccaaaactgt ggtgaatatc tacaaagagg aaacggaaag acagaaaatg
     4081 atgatcaagc aagcggacta tgatgaaaaa caactctcta ttatcttgtc ttgcttaaat
     4141 aaactctttg aggacaaata ctttcaactc gtccttaaat cagaacattt agacgatatg
     4201 ccaaaagatt taagccaacg aatgttaaaa caacgagagg gaaatattta tgcctaaaca
     4261 tattacttat gcctttcata atcagttaat ttcgcttcca attgatgaga ttattccatt
     4321 aaaaaagatg gataaaaatt ttgagaaaag cactaagttc caaagcattc tggcttcaat
     4381 tcgtgaaatc gggattgttg aacctgtggt cgtctatcca gaagaaaaca accaatatat
     4441 tttgttagat ggccattctc gtgtacatgc actcaaaaag ctaggtgtgg ataaggtgct
     4501 ttgtatgatt tctaccgatg atgaaggctt tacttacaac aagcaaatta accgcttaac
     4561 cgccgttcag gaaaataaaa tgctgatgaa aaccattgag cgcggggttt cggatgaact
     4621 gatcgcaaga acactcaata tcaatctaaa agcactacgg cagaaaatga atatgcttaa
     4681 tgggatcaca agagaggttg ttgatatatt ggccaataag caggtcagta aagagatatt
     4741 tcggattttg cgcaagatga agcctgaacg ccaaattgaa gtggcacaaa tgatgatcgc
     4801 cagtaataag tttacattga catacgccaa tatgatgttg ctcagttcac gcaaggagga
     4861 attagtcgaa agccacaagt ctaaaaccac gaatgatgat ttaaccgatc tttccattat
     4921 gcaaaaagag ctagagcgac ttaaagagaa ctataaaatt tccgaagaga aattggcgga
     4981 cttaaaaatg ggattggttg tggcgaaagg gtatgtcaaa aaactattga ataatgctgc
     5041 cgtggtagat ttgcttgaaa atgatcagag tgaaatctat cttactc
//
LOCUS       DANLXB010000168         5084 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLXB010000168 DANLXB010000000
VERSION     DANLXB010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5084
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            131..2767
                     /locus_tag="PXD41_002129"
     CDS             131..2767
                     /locus_tag="PXD41_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6289630.1"
                     /translation="MDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNP
                     VEKEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLE
                     KVIQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNN
                     VFAINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESK
                     KQPGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIG
                     VADEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEK
                     GVDNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLD
                     GENHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSG
                     LIANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAK
                     RGLIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQ
                     SALEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEH
                     LNQKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTAL
                     NIGLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMP
                     NQWIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSI
                     SPYIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMN
                     LDYSRVKSANLFGWKVNVGFSF"
     gene            complement(2908..3345)
                     /locus_tag="PXD41_002130"
     CDS             complement(2908..3345)
                     /locus_tag="PXD41_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL6289631.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3381..4301)
                     /locus_tag="PXD41_002131"
     CDS             complement(3381..4301)
                     /locus_tag="PXD41_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL6289632.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4317..5006)
                     /gene="ung"
                     /locus_tag="PXD41_002132"
     CDS             complement(4317..5006)
                     /gene="ung"
                     /locus_tag="PXD41_002132"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL6289633.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1683 a         1033 c          942 g         1426 t
ORIGIN      
        1 tgcaattagc atttctagtt ttttatctat tgcatacgct acagaatcaa tagagaatcc
       61 acaacctatc attcaattat ctgagagcct cagctcaaaa tatagtggca agggtgttaa
      121 actaggcgta atggatgagg gcttcatggt taaacaccct cgccatagtt cacatcttca
      181 tcctcttatt catcaattaa caacacccga aggcgaagta agaatctacg atgcaagtta
      241 ccctcaattc gaggtaaacc ccgtagaaaa agaagatgga attgatctta ttccttctct
      301 tgaaacacac ggtgcaggtg tagctggtat tattgccgct caagcagata aaactcttgg
      361 tgatggctat agtggtggta ttgcaaaggg agctgagctt tatgttgcaa cgaagtcata
      421 taaacgaact ttagaaaaag ttattcaaga tgctaagaaa gaattagaaa atgcaaaaga
      481 cgaagaggat gaaaaaacgc caagtctgga tcaaatggca aagaatgact tattagcaag
      541 caaagaaaaa gaaatggcaa ttgaacgtgc tgaatgggca tccgggctga ataaattact
      601 agataataat gtttttgcaa tcaataatag ttggaatcct ttttctatta gcgatgacat
      661 caatgttgta gataaatttt atcaatctat caagcaaaat aagcacaatc cgctacttca
      721 agctattatg agagccaaaa atagcaacac cttattagtc tttgctgctg gtaatgagag
      781 caagaaacag ccaggcgtaa tggctcttct accacgttac tttcccgagc ttgagaaaaa
      841 tttaatttct gccgttgcgg tagataaaga acaaaaaatt gcttcatact ctaaccactg
      901 cggagcaagt aaaaactggt gtgtagcagc accgggcgat ttacatgttt taattggcgt
      961 tgctgatgaa cataaaaaac cacaatatgg cttaacaaaa gagcaaggta cgtcattttc
     1021 agcacctgct ataactgctt cattagcagt attaaaagaa cgctttgatt atctgactgc
     1081 gactcaaatt cgcgatactt tattgactac cgccactgat ttaggtgaaa aaggggtcga
     1141 taatgtttat ggctggggtc tcattaacct gaaaaaagct gttaatggcc caactcaatt
     1201 cctaaatgat gaaacgatta ccgtaactcg tgatgaccat tggtcgaatc cactcgccag
     1261 ccaatttaaa attacaaaaa aaggggacaa atcactgcat ttagacggcg aaaatcattt
     1321 agatacggta gcagttgaag aaggtagatt ggccttaaac ggtaaaacta aggtgaaaac
     1381 aatcagtaac catgcaaatt tagctgtcaa tggaaccgaa gttgagcaaa attattcttc
     1441 gtctggacaa agccaattag aagtgttggg caaatctggg ctaattgcca atgctcaagc
     1501 caatatacat ttagccggct cgttaaaaat tgatgataaa ttaacagaaa aaaccgaagc
     1561 aggtgatgtt tcagcgaccg tagtacagtt gaaagataaa gcaacttatc aaggcggatt
     1621 tacacaatta gtcgaaaacg agaatttagc caaacgaggg ttaatccaag atctctattt
     1681 caaagagagc gaaattatcg caaaagtgaa taagccacta actgatgaga aagccgatac
     1741 aaacgggcaa gccggtttag cattattaaa tgcgttaaga actacaccta ttgcctatcg
     1801 ccgtagttgg tataacggtt ggctgcaatc tgcactcgaa caacgtaaat tagataatct
     1861 gcactatgct gtatctaaca atatttatgc agatagcctt gaattgctac gtagccaaaa
     1921 tgccaaaggc ttaacccaag cacagcaaca tttgtttacg gcataccata caccactgca
     1981 aacgactgtt tgggctgaac atttgaatca aaaacaatca gcctcatcga agcataccga
     2041 tgttaaacac caccaatcac aattgggagt aaaccacaaa ctggcagata aaacggtact
     2101 tagtgcaaca ctttcacagc aaaaaaaccg cttagaaaaa ccatttgcac aagctacctt
     2161 aaaacaaaca gcattaaata ttggcttacg ttatcattta gataacgctt ggtttagtga
     2221 agctacattg caatttgctc gccagaaata tcaacaaagc cgtcgatttg ctagccatca
     2281 actaggtact gcagaaacca gaggttcaac gctcggtggt gaaatgcgga tcggttatca
     2341 atttatgcca aaccaatgga taattgaacc aagccttggc gtacaatgga ttcaaaccaa
     2401 aatgaatggt ttaaatgaaa gtggcgaact tgcgactcaa acggctgcaa tgcgttatcg
     2461 tgatgtgaat attgttccaa gcgtgaaatt acagcgaact ttccaacttg agcaaggctc
     2521 tatttcccct tatatcgggc taaattactt gcatagatta aatggaaaaa taaccaaaat
     2581 taccagtaac attgcaggaa aaacactgca tagtgaagca acgacgaaac gtaatcgcca
     2641 attaaacggc gaagtcgggg tgaaactgca ttataaaaat tggtttactg cgatgaattt
     2701 agattacagt cgagtgaaat ctgcaaacct atttggttgg aaagtaaatg ttggctttag
     2761 tttctaactt attatggtgg gacacaagcg gttaatttag ggtgaaaatt tgcaaatttc
     2821 actctatttt caaccgcttg agagaaaaaa ccttgaacaa ctgttcaagg tttttgttta
     2881 gtgttctatg actaaataag aaaaaactta ttgcttacgg acaaataagg taattccctc
     2941 cactttctgg acttcaatct tatctgctac ttgtaaatta ttacctataa cacgccaagt
     3001 cgtatcacca aattttcctc gagcgatgcc attaggtaag atttcaacca caaagccttg
     3061 agctcctagc atagcatgct ctcgagagtt aagggaactg ctctgatcct ctttcttgtc
     3121 ttttccatgc tgatatttcc accaaataag actaaaaata gtcgcaatta tcgcaaataa
     3181 cgcaatttgt aacgcttgcc ctaatgtaaa aagtgcaacg atgaaagcaa gaataagcga
     3241 ggcaaatccc caccacataa taaagacacc cggtaatact aattctaatg caagtagtac
     3301 aaagcctaat atgctccagc caatccaatt aaaaaaccag tccatactcc ctccatatac
     3361 tcaattaatc cggttttagg ctatgagctt gttttattgc tttttaaaat ttcagcaata
     3421 ccagcaacag aaccaatcaa atttccagct tctaacggca taagtacaac tttactgtta
     3481 tctgaagaac ctatttcttt caaagcttcg gtgtattttt gtgcaataaa atagttaatc
     3541 gctgtagtat cgcctttagc aattgcttca gaaaccattt gagtggcttt agcttccgct
     3601 tctgcggctc gttcacgagc ttctgcctgt aagaatgctt cttgtctttc accttctgct
     3661 tttaaaatac gagattgttt ttccccttca gcccgcagaa tttcagcttg tcgaatccct
     3721 tctgcttcaa gaatatcagc acgtttatta cgctcagctt tcatttgagc gttcattgcc
     3781 gcaaccagct ctttcggtgg acgaacatcc cgaatctcaa tacgggtgac ttttactccc
     3841 caaatattag tcgcctcatc gacaatggaa agtaatctac cgttaattaa atcacgctga
     3901 gagagcatat catctagatc catagagccg agcacggtac gcatatttgt catggttaaa
     3961 ttaacaattg cttgctctaa atgattcact tcataggcag ctcggcgagc atcaactgtt
     4021 tgaacaaaac atacagcatc aatcgcaaca cttgcattat cacgtgaaat aacctcttgc
     4081 gatggaatat ctaaaacttg ctccatcata ttcatttttc gcccaatacg atcaataaaa
     4141 ggtacgacaa tgttcaaccc cgggcttagc gttttagtat aacgaccaaa acgttctact
     4201 gtccaatgat agccctgtgg cacaatttta atagtcgaac ttaatgcaac taaaacaagc
     4261 acaacaaatg caatactaac aatcggtaaa tcaaaattca tcgtttgctc cttaaactaa
     4321 tgtgttgaag aataactaac gtctactgat aattgccaat taattgggga tattccttga
     4381 gaaatcaagt agttattggc tttagaaaaa tgtttacaac caaaaaatcc acgatatgcg
     4441 gaaagtggtg atgggtgcgg agaagctaac acacaatggc gattacgatc gataaattgc
     4501 ccctttctct gagcgtggct tccccaaagt agaaagacta aattatcacg gtgttgattt
     4561 aattgtgcga tcactttatc ggtaaaaatt tcccaaccaa tttgtgaatg cgaaccggct
     4621 ctaccttgct caaccgttaa gctggtgttt aacataaata ccccttgttt tgcccagtca
     4681 attaaatagc catgcggtgg aatttgaaat ccttcaatat cttcagataa ttctttatac
     4741 atattgacca gagaaggtgg cggggcaacc ggcggtttaa ctgaaaaggc taatccgtgg
     4801 gcttgatttg ggccgtgata aggatcttgc cctaaaatta ctactttcac gtcactaaat
     4861 tcggttaagg caaaagcact aaacacctcg ttttgcggag gatagatgac tttgccggct
     4921 aatcgttcgt tatgtacata ttgtaaaatt tgttgaaaat acgctttttg tttttcttcg
     4981 cctaaagctt ctgtccaagt tttcataaaa ccaccaagtg tatatttttt acccaaccaa
     5041 ctcaatcatg tctaaaaatg gttaaatttt tatcgctttt tatc
//
LOCUS       DANLXB010000169         5076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLXB010000169 DANLXB010000000
VERSION     DANLXB010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..112
                     /locus_tag="PXD41_002133"
     CDS             <1..112
                     /locus_tag="PXD41_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HDL6289634.1"
                     /translation="KAHFELYLKECEWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(113..1000)
                     /locus_tag="PXD41_002134"
     CDS             complement(113..1000)
                     /locus_tag="PXD41_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL6289635.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(1026..1171)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(1348..2358)
                     /gene="mglC"
                     /locus_tag="PXD41_002135"
     CDS             complement(1348..2358)
                     /gene="mglC"
                     /locus_tag="PXD41_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL6289636.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(2372..3871)
                     /gene="mglA"
                     /locus_tag="PXD41_002136"
     CDS             complement(2372..3871)
                     /gene="mglA"
                     /locus_tag="PXD41_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL6289637.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(3943..4932)
                     /gene="mglB"
                     /locus_tag="PXD41_002137"
     CDS             complement(3943..4932)
                     /gene="mglB"
                     /locus_tag="PXD41_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6289638.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
BASE COUNT         1487 a         1076 c          918 g         1595 t
ORIGIN      
        1 gaaagcccat tttgagctat atttgaaaga atgcgaatgg cgttttaatc acagtgactt
       61 aaaatctcaa atattccttt taaaacaatt ggttaaaggg gggttaggtt agttatctag
      121 gacagcccct aaaagtaata taaccgatat ttaggcctga cttttcaaat aattgaatat
      181 ctttattcgc ttttaaagca gacaaatctg acgggttcgg ataaggcatc gcttggcatt
      241 cgttcttctc caatttagct aaacgtactg aggcatcggg cgtaatacta aatacaaggc
      301 gatctatctt cgcttttcct tcccaatagt gttcaaatgc tgtaaatctt accgctgcgt
      361 ccttttggta accatagaac tggaatgcac ctgtgcctat aggttctaaa tctaattttt
      421 ccggcgtacc cgctatttgc attttatttg catattccgc agaaaagatc gccataaaat
      481 ccatagctaa attagcaaga aagggggcat tcggttcaga taattcgatt tttaccgtgt
      541 aatcatctac ttttgttaca tttttgatga tgttttgcat attcattccg tagaaaaact
      601 catagttacc gccggacaat ttgtgatatg gattcgtctt atcaaactga cggttaatcg
      661 aaaaaataac atcatcagca ttaaaataac gactaggggt aaaactttta ttactctgga
      721 actgcacatt ctgacgcaag aaaaaagtat aaatttttcc gccttcactg atttcccatc
      781 gctctgccag agaaggagtg aggttagtgg tacctttttc aaaatcaatc aggcgattat
      841 agattgcttg cccgacatca agagtagctc catctgttgc aatctgagga ttcaatgctg
      901 ccggagatga ttccaaacag taagtaaaag atttaggtgc tgcgaaagca gaacctgtaa
      961 atgctaaaga aataagtgca agttgtgtca gcttgttcat tgtcatatcc ttaaatgtta
     1021 agcaataaaa aaccctttca aaagttgcct tccgaaaggg ttagaattgg gtttgcgatt
     1081 ttggattgcg tttgccattt caggttttcg gaagatatct tccgaacacg ccaaatgccc
     1141 gaaagattaa tcggtcaaat ggtagtgatg atgtttaacg caatagctca taatattctc
     1201 caaaattgaa tgtttaggaa tttacgcttt ttaaaaatca attgcaaacg ttttctttaa
     1261 aattttgtaa aaaattcaac atttttcacc gcttgtatcg tacctaggag caaatggcga
     1321 tttgctccta ggtttccaag caataggcta ttttttcttc gcatatttaa gtgagtcaat
     1381 cgctaccgcc aagataatga tgccaccttt aataatatat tgccagtaag ggtttactcc
     1441 aatataggtt aagccgtagt tgataacggt gaagattaac acccctgtta ctacaccgat
     1501 gatagtaccc acaccaccgg caaaggatac cccacctacc acacaagcgg caatggcatc
     1561 catttcatac ataaagccta agttgttggt tgcactaccg atacgacctg cttctaacat
     1621 accgccgaag gcatagaaga tgcctgaaag catataaata cccatcaggt taagcggtac
     1681 gtttacaccg gaaactcgtg ctgcttcagg gttgccgcca atagcaaata cgtttttacc
     1741 gaagcgggtt ttattccata acgtccacat aataatggta gcaatcacgg cataaatagt
     1801 gatgtaggat agcctaaagt cgccaaagcg gaagaagcct tgtgcaaagg ttgagaaatc
     1861 atcgctaaag cctgcaattg gcgatgagcc tactgcatcg tagtaaagcg agttgatacc
     1921 atacacaata atcattgttc ccatcgtggc aataaacggt gttacgttga ggtaagccac
     1981 cacaaagccg ttaaataaac caatgacagc accgatggca cacacggtta atacaaccac
     2041 aggaatcggg atttccgaga ggtttgggaa taccttgttc atattttcca ttgattggag
     2101 caaggtggcg gaaattaccg ctgccaagcc cacttggcga ccggcagata agtctgtccc
     2161 ttgtgttaca atcaagcctg caacccctaa tgcaataatc aaacgcacag aagattgcga
     2221 taaaatgtta ctgaagttac gcaagctcaa gaaacttggg tcttgcacaa taatcacaat
     2281 aagtaagatt aataatacga agtaaatcgc attttgttta aaaaaatcga gtgttctatt
     2341 ttgttgtaaa gcagacatac ttcactcctt gttataaata ttttgctgcg agttgcaaga
     2401 tttcttcttg cgaggtgtga gcggtttcga caatacctgc aactttcccg ttactcatca
     2461 ctaaaattcg gtctgtgacc ccaagcaatt ccggcatttc cgatgaaatc ataatgatgc
     2521 ctttatcttt attcgccagc tctaaaatca actggtaaat ttcaaatttt gccccgatat
     2581 cgataccacg ggtcggctcg tcaagcatca agatttcagg ctgggttaac aaccaacgcc
     2641 cgataatcac tttttgttgg ttaccgccgg aaagtgagcc aatatgcgtt tgatgcgatg
     2701 gggtttttac attcatcgaa tcaattaccc attgggtatc gcttttcatt tttttattgc
     2761 tcagtaagcc gaacttgcct agataagact tcatatttga aatcagagag ttaaactcaa
     2821 tgcttaagtt ggcataaatc cctgttgaac ggcgttcttc tgtaaccaat gcaaagccgt
     2881 tattaatcgc atcaaaagcg ttgcggttat tgatttcttt atcgtttagt cggatagtgc
     2941 cgcctgcttt ctcccgtaca ccgaaaatgg tttcaacaat atcagtccgt tttgctccaa
     3001 ctaagccggc gatgcctaaa atttcccctc tgcgtaagct aaagctgaca tcttgaatag
     3061 agggttgatt ttttgccgtt aaatgctcaa cttcaagaat cacttctttc ggcagattgg
     3121 ttttttcagg gaaacgctgg gtcagctcac gccctaccat cattgaaacc acttgatcca
     3181 ttgaggtatc tttaattgca acggtgttta cccatttacc gtcacgcaaa atggtaattt
     3241 catcacaaat tttaaaaatt tcgtccattt tgtgtgaaat atagataatg ccacagcctc
     3301 tgtctttcag tttttggata attttaaata aatgctcgac ttctttttct gaaagtgacg
     3361 aagttggttc gtccataatc acaattttgg cattgtaaga gaaagctttt gcaatctcga
     3421 tcatctgcat ttgtgaaacc gataatttgg ctactttatc acgtggatca acatcaatat
     3481 ctaattcatc aaaaatcgcc ttagtatcac gatacatttt atcgtgatct acaaaaggcc
     3541 cttttagtgg gtaacgacct agccataagt tatccattac cgtcacttgt tttactaggt
     3601 tcaactcttg gtgaaccatt gagatcccat tttctaacgc ctcttttgag gtcttaaaat
     3661 tcaccggctt gccaagaaag agaatatctc cctcatcttt agcataaatc ccaaataagc
     3721 atttcagtaa cgttgattta cctgctccat tctctcccat taaggcgtga acactatggg
     3781 atttcaccgt taagttagca ttatctaagg cttttacccc gggaaatgac ttgctaacat
     3841 ttgtcattgt gagtaaaact tcacctgtca tatctcaccc ctgattacat cgaaaaatcg
     3901 aaaaaaagca cgggtatcca tcacccgtgc taaaagcgtg aattatttta aaaattcaga
     3961 taagttgtct ttatcgacac caacgtaagg aatacgcacc acacggtttt ccaatttcca
     4021 ttgtgtacca gcaactgcat ctttaccgtc tgctaagtta gcagaaagct gaacaaccgc
     4081 tttaccttgg tttacaccat catttaatac cgtaccggct aattcacctt ttttgattaa
     4141 ttgaagtgct tctggcaatg catctacacc gaagattggt aattttctac cgtgagcttt
     4201 ggttgcttct aatgcaccta acgccatacc atcattatta gaaataatta cttcgatgtc
     4261 tttcgcttta ccacttgata accaagcatc cactttatct ttagcttggg ctgcatccca
     4321 taatgctgcg tccataaaga tttgctcact gtcgatacct tgtgctttta agctttctac
     4381 cacatattta gtacgtgctt ccgcatcagg gtgacccggc tcacctttta ataaggcaaa
     4441 ttggatttta ccgtctttat tcaagtctaa ttcaggatgg gctttccact gttttgcaat
     4501 taactcacct tgaataatgc ctgactcttt cggctcagta cctacataat aagctttcgg
     4561 atagctatca atcgcagctg cacccgggtc tttattgaag aacaccacag gcacatcttc
     4621 actttttgct ttttgaataa ttgttttata agctgatgga tccactaagt taattgctaa
     4681 tgctttaacc cctttagaaa gtaatacatc aacttggtcg ttttgaatag attgcgtatt
     4741 ttgcgagtca ttcattaata actcgacttt ttgtgtttta ccctcttttt cgatttcttt
     4801 acgcattaat gccataaagt tatcgtcata tttataaatt gttacaccaa tacggttttc
     4861 agcttgagct gtactgatcg ttgcacctaa tgcgactgcc attgccactg cacttaatac
     4921 tgctttcttc atagtagatc acctctttta tgtgtttata gggaaatgaa ttgcttacca
     4981 taagcaactt ggtgcaaagt ataactaatt ttaaaaaaac aatccgtgat cattctcaca
     5041 gaattaagac aaagtggaga aatttttaat tttaag
//
LOCUS       DANLXB010000170         5070 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLXB010000170 DANLXB010000000
VERSION     DANLXB010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(25..576)
                     /locus_tag="PXD41_002138"
     CDS             complement(25..576)
                     /locus_tag="PXD41_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289639.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            669..1520
                     /locus_tag="PXD41_002139"
     CDS             669..1520
                     /locus_tag="PXD41_002139"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL6289640.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYKYHPA
                     IQYPFSV"
     gene            complement(1574..2017)
                     /gene="lysM"
                     /locus_tag="PXD41_002140"
     CDS             complement(1574..2017)
                     /gene="lysM"
                     /locus_tag="PXD41_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL6289641.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            2256..2693
                     /locus_tag="PXD41_002141"
     CDS             2256..2693
                     /locus_tag="PXD41_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL6289642.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            2687..3130
                     /locus_tag="PXD41_002142"
     CDS             2687..3130
                     /locus_tag="PXD41_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6289643.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            3127..3869
                     /locus_tag="PXD41_002143"
                     /pseudo
     CDS             3127..3869
                     /locus_tag="PXD41_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            3871..4041
                     /locus_tag="PXD41_002144"
     CDS             3871..4041
                     /locus_tag="PXD41_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289644.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            4031..4624
                     /locus_tag="PXD41_002145"
     CDS             4031..4624
                     /locus_tag="PXD41_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289645.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
BASE COUNT         1632 a          995 c          960 g         1483 t
ORIGIN      
        1 ttttaccgct tgtcatagct taacttattt atgctttttg gttttacctt tagattgcga
       61 ttcattttca tcttcagcaa tcgtttttac acaaaggtgc aatatttgct caaccccatt
      121 tttgatatac tcatctccac gaactttgtt cttctgtaaa tctaacatcg catcgtgaat
      181 gccctgggtc atactcgctg gttgaacaag cccccaacaa ttaggatcta aatgattgaa
      241 atttgcctgc aaatctgcgg cataaatcac accactataa taagcataca cattatggtc
      301 taacattcga ttaatcgtta ttgctctaat ttgctcaatt ggcaatgtaa cctttttagt
      361 gtaccaatca tttaccccat tcataaagga attgatatca tagctttcat ttactctatc
      421 cgcataagtc tgagccgttg caccataagc aatagcataa gatttctgat caacatcatt
      481 atcatttaaa cgtgtccaac cgcttttatt cgatgaacaa gctgctaaaa aaacagcggt
      541 ggaaaaaacc agaatggatt tcattatacc tttcatatcc ataactcctt attgtgttgt
      601 gtcataaagt tttagctatt ttaccgaata aatggcaaaa ttacctaaaa ttttttatga
      661 ggtaaataat gaaacagtat ttagacttat gtaaccgcat cgttagcgaa ggcaaatggg
      721 ttgcaaatga acgtacaggc aaacactgcc tcacagtcat taatgctgac ttaacttatg
      781 acgtagaaaa aggagaattt cctttagtta ccactcgccg tagttattgg aaagctgcga
      841 ttgccgaact tttaggctat attcgaggct atagtaatgc tgctgatttc cgtcaattag
      901 gcacaaaatc gtgggacgct aatgcaaatg aaaatgcaca atggcttgct aatccctatc
      961 gaaaagggga agatgatatg ggcttggttt acggcgcagt agggcgtaat ttcccgaaac
     1021 cagacggtgg ctcagtcgat ttattgcgac aaattgtgga cgatttgaaa aaaggaattg
     1081 ataaccgtgg tgaaatttat accttctacc accccggcgc tttccatatg ggctgcttac
     1141 gtccttgttt acacagccat catttttctc tacttgatgg cacgctttac ctgaatagta
     1201 ctcagcgttc ggcagatgta ccgcttgggt taaattggaa tatgattcaa tgctatacct
     1261 ttttagcttt aatggctcaa attacagggc ataaggcagg acaagcgttc cataaaattg
     1321 tcaatgcgca tatttatgaa gatcaactag aattaatgcg tgatgttcaa cttaagcgag
     1381 aaccactcaa tgcacctaaa ttaatcatta atcctgatat aaaatcctta gaagatttag
     1441 aaacttgggt gagcttagat gatttcaaag ttgaaggtta taaataccac cctgccattc
     1501 aatatccatt ttcagtctaa caccacctac aaaaagagct aaactttcga ccagcttagc
     1561 tctttcaatt tgattataaa cctttcggga tacgaatttt ttgccctggg aagattttat
     1621 tttcgtcttt aataacttct ttatttgctt ctacaatcgc tttatatttt gcaccgttac
     1681 cataagcttt tgtggcgatt tcccacaacg tatccccttt ttggataaca taaagctcat
     1741 catcacttgc aagttgcacg tcatcaggca aggtcacttc atcaatattt acctcagtga
     1801 taccagccac attacccgcc atcaataccg ctttctcaac agctgctgcg gttgaagcaa
     1861 tgcctgaaat tttcgctacc ccgttttcaa ccgttacgtt tacattttca acgcccggat
     1921 tgtcttccgc caaatgctct gtaaccgctt ttgaagcatc ttcttcttta ttaaataatt
     1981 tacgaccaat gtcgccaaca aaatcaaata agcccatagt aagttcctta taaaatagct
     2041 aaatgaagtg ggtattctac acaatttcca actattgaaa tagtgcattg ttctcttaga
     2101 acgtctaaaa gctaattagt tcctcaaggc aacgcaacac aagtggtcat tttttctcaa
     2161 ttttttgcaa aaacaaacgc ttagatttta tattttactc attttcagct agaatattaa
     2221 gtttaaatat ctgattgaat ttctgggaac attctgtgaa acaagtacaa ttttatctat
     2281 taagccaagc cgatgcagcc gagctttccg ctgctgaaat gcaagcctgc gaacttgcgg
     2341 ctcaagcgtg gcgattaggt aaacgggtac tgattgcatg cgaaaccgag caacaagcgt
     2401 taaatattga cgaagcactt tgggcaagag atccggattc gttcgtgccg cacaatttat
     2461 cgggagaaat caccacttac ccaacgccta tcgaaatttc gtggaaaggt aaacgcaatg
     2521 ctcaacgtcg ggatttgttg atttcactcc aaacccaact ccccgaattt atcggcagtt
     2581 ttacccagat tattgatttc gtgccggtgg aagaaaccgc caaagcacag gctcgtgacc
     2641 gctataaaca ataccgccaa cttggttggc aactggaaac gatacaatgc taaaaaacct
     2701 ctcttggcgc gcaaaacgct ttgatgaact ctccacccaa gagttgtttg agatttacca
     2761 cgcacgtaca gcggtgtttg tggttgagca aaactgccct taccaagaag tcgataataa
     2821 agacctgcaa gcggtgcatt tctttacaaa aaatgcaaaa aatctgaccg cttactgccg
     2881 tttaattcca gccaatgatg gtgtgcatat aggtagagtg ttggtggtga aagaaaatcg
     2941 tggctcaggc ttagcaaggg aattggtaca aaaagcgatg gattattgtg gcgaacattt
     3001 tcctgctcaa cccattcacg cccaagccca aagttacctg caagggtttt atgaaagttt
     3061 tgggtttaaa gcggtttcag aagtgtattt ggaagatggg attgcgcatt tggatatggt
     3121 gttagaatga ataaattagc taaaatcgaa caattaaaaa cagcactttc acaacgccgt
     3181 ccattatctg aaagcgaagt tcaacgactg cgggaagagt ttattattga aagcagctat
     3241 aattccaatg caattgaagg caataccatt actttgcgtg aaacggtgct cattttaaaa
     3301 gagggaatga ccattgccga aaaaccgatt cgggagcatt tagatattat cggttttaag
     3361 gatgcattca actatattta tgaattagtc gccaataaag aaccattaag cgaacgagcg
     3421 attaaagata ttcattctct ggtattaatg ggcaatgcgg aaagccgagg ggtttatcgc
     3481 aaaattccag tacgaatttt aggggcagaa aatgcccccc cccttattta attgccgaag
     3541 aaatgcaatt attgattgaa aaatatcaac aaaaactgac cgcacttcat cccatagagg
     3601 caatcagttg gctgcattta gcctttgaaa gcattcaccc ttttattgat ggaaacgggc
     3661 tcacagggcg attactgatt aattttgaat tattaaaaca gggctattta ccgattgata
     3721 ttaaatttac caatcgagcc caatattacc aatgttttga tgatttccat aaaaatcaac
     3781 aagatattag tagtttggtt gaattgatta gtcagtatga attagctgag ttggaaaggt
     3841 atttggcgat tctgaaacag aggacataaa atgacaagtc gtgaagaatt actgaaaaaa
     3901 caacgtgaac tggatattct ctttacagca tggtttgaag aaaagaaaaa gcacgaagtg
     3961 ctgacgtatc gccgagaaaa tggggattta attcagcatt atccggacgg tacggaaaaa
     4021 gtgattgaat atgcacaata acctagcaat tttttactgt ggcacaaacg gagccggcaa
     4081 atctacttta cgttctttca atcaagataa agtcgagatt gtgattgatt ccgataatat
     4141 tgcgatgcag attaacccac tcaatccaag attggccgat attgaggcgg gcagaaaagc
     4201 aatcgaacta tttcagtttg cagtaaaaaa tcaggttgca ttttcaatgg aatcaaccct
     4261 ctcgggtaaa tctattctaa aacgaatgga aaatgccaaa gcaggatatt tcaaaactcg
     4321 attaaattat attggtgtcg atagctataa aattaacatc gcacgggtaa aagcaagagt
     4381 gaaagccggc ggacatttta ttgatgaaga aaccattaga aaacgctatc acattagccg
     4441 tgaaaattta attgaagcga tttttatcaa tgatgaaaca ctgatttatg ataattcaga
     4501 aaccaagccg aatttgattt tgcagattgc tgataagaaa gtgataaaaa tttcagacaa
     4561 aataccgaat tggtgtaatc agctttgtga tgaattagtg gaattagggt ttaaaaccac
     4621 ctagcacgag ccgtgctagg ctcgacaatc ccagctcctt tggagctgta acttagagcc
     4681 acaaagtggc tcagctatgc gtaaccccac acggcttgtg tgtgggtgac aagctgtcgg
     4741 attaaagaaa aactttgcaa aaaacttctc gaaacagacc gcttatgcct atctctgata
     4801 ggttcttaaa taaataagct ctcgtcgaag acgatcacca tcggggatat tggaacaaaa
     4861 acacaaagat gaaacagaat aggaaaaagt ctaaaaaagt tattggtact cataaaaaag
     4921 agaatggctt aaaacagttc ataaaaaata acaaaattcc tattattctt atatctgcca
     4981 tatggagtat cttcacaact gatattttag aacgcatcgc aaacatgcct attatttgga
     5041 aaaatttcga ggagaattac ctatataata
//
LOCUS       DANLXB010000171         5022 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLXB010000171 DANLXB010000000
VERSION     DANLXB010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            253..1935
                     /gene="recN"
                     /locus_tag="PXD41_002146"
     CDS             253..1935
                     /gene="recN"
                     /locus_tag="PXD41_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL6289646.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(1982..2057)
                     /locus_tag="PXD41_002147"
     tRNA            complement(1982..2057)
                     /locus_tag="PXD41_002147"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2022..2024),aa:Ala,seq:ggc)
     gene            complement(2137..3576)
                     /gene="gltX"
                     /locus_tag="PXD41_002148"
     CDS             complement(2137..3576)
                     /gene="gltX"
                     /locus_tag="PXD41_002148"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL6289647.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            3751..3826
                     /locus_tag="PXD41_002149"
     tRNA            3751..3826
                     /locus_tag="PXD41_002149"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3784..3786,aa:Val,seq:tac)
     gene            3875..3950
                     /locus_tag="PXD41_002150"
     tRNA            3875..3950
                     /locus_tag="PXD41_002150"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3908..3910,aa:Val,seq:tac)
     gene            4003..4078
                     /locus_tag="PXD41_002151"
     tRNA            4003..4078
                     /locus_tag="PXD41_002151"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4036..4038,aa:Val,seq:tac)
     gene            4127..4202
                     /locus_tag="PXD41_002152"
     tRNA            4127..4202
                     /locus_tag="PXD41_002152"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4160..4162,aa:Val,seq:tac)
     gene            complement(4356..>5022)
                     /locus_tag="PXD41_002153"
     CDS             complement(4356..>5022)
                     /locus_tag="PXD41_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL6289648.1"
                     /translation="SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNAT
                     SPTGVRGIMMLTKDTADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYS
                     LAAYNMGLGHLLDLRRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEAL
                     QYVENIRRYYGSIINYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITP
                     ASN"
BASE COUNT         1492 a         1041 c         1013 g         1476 t
ORIGIN      
        1 acgcttggga gtttgttacc tttgaagata aagcagaagt cccacaaggt taccaagtac
       61 aacaagaaat ttttatttag tctaaatggc ttaaaagacg aacagaaatg ttcgtctttt
      121 attttgcaaa ttttttctaa tatttaaccg cttgcaaccc gcctcattag cgattttttc
      181 gcccttatct atttactgtt taaaaaaaca gttgtactat atacccatac agttaatctt
      241 gtgtggtgta ttatgcttac tcaacttact attaataatt ttgcgattgt tcgccatctt
      301 attcttgaat taaatgaagg tatgtctgtt attaccggtg aaaccggtgc cgggaaatca
      361 atcgctattg atgccttagg gctatgcttg ggttatcgtt ctgaaagtgg gatgattaga
      421 aacggttcgg acaaagcaga tataagtgca acctttacta tgcagccaca tagccctgct
      481 tatttatggc tacaagagca tgaactgctt gatgaagata atcctcaaga gtgtatctta
      541 cgccgtatga ttaatattga tggacgctca aaagcctttg taaataaccg atcattacct
      601 gtttcacaac ttcgagagtt ggggcaatat cttattcatt taaatgggca acacgcacca
      661 caattactcc taaaaaacga atatcaactt gaaatagtcg atcattatgc cacgttacag
      721 cctctattga tgaagatggc aaagcaatat gggaattgga aagaactgaa taagcaggta
      781 aaaaatttcc aaaaacagtg ccaagaaaat gaagctcgca aacagctatt agaatatcaa
      841 gttgaggaat tagatgaatt tgcaattaaa gcaaacgaat ttgaagaaat ggaagagaaa
      901 tacaatatct tgtcttcttc cgaggagctt actgagcttt cagatgaaat cacacgctta
      961 ttaagtgatg atgaaatcaa tgcaaacagt ctgatttata aagcgttacg caatgcagaa
     1021 aacttggctg aggttgatag ccaatatcag ggcattttag atatgcttaa tgaggccctg
     1081 attcagattc aagaagcaag ctccgaagtg gctcaattag ccagtaaaat tgaacaagat
     1141 ccggaattac tacaggagct ggataataga attgcacaaa ctatatcgtt agcacgcaaa
     1201 caccatattc aaccgaatga attatggcaa tatcacgcga cattaaaagc agaactacag
     1261 gaattactgg attttgaaga taatgaagaa caactcattc aaaatgaaaa acaagcttac
     1321 caagagtgta taacattagc agaagaaatt taccaaaaac gtctagatgc cacacataag
     1381 ctctctgaac aagtaacaaa acaaattaaa cacttagcaa tggaaaacgg tgagttcttt
     1441 attcatatag aacataatct tgaaaaaatg tctgcaaatg gtgctgacta tgtcgagttt
     1501 aatttacgca gcaatttagg acaacaaccc caaccactgg caaaaattgc ttctggtggt
     1561 gagctatctc gcatttctct ggcagtacaa gtgcttaccg caaataaact ttctacgcca
     1621 actattattt ttgatgaagt tgatgttggg attagtggct ctgctgccac tacagtcgga
     1681 aagctactgc gtaagctagg cgaaaaatgc caagtattat gtgtaaccca tttacctcaa
     1741 gtggcaagtt acggcaacca gcagtttaat gtacaaaaat atgtagaaaa taatcaaact
     1801 gaaacgcaaa tgacattact cacagaagca gagcgtattc acgccttggc tcgactatta
     1861 ggcggaagcg aaatcaccga aacggtttta gctaatgcaa aagaaatgct aaatttagcg
     1921 aaaaataacg aatagccaaa aagaaaaatc gcatcaatga atattgatgc gattatgaat
     1981 ttggtggagg taaacgggat cgaaccgatg acctcttgca tgccatgcaa gcgctctccc
     2041 aactgagcta taccccctta atacaagcgg aataatatgc tttccgcttg aagatgtcaa
     2101 tggctttaat caagcaaggt gttgattgat taaaaactag ctattcgcct gaataaactc
     2161 aatcgctttt tgtaagcgag ctaaggttct ttctttaccg actaatttgg cggtgatatc
     2221 cattgacggc gattgcccac ttcctgttac cgctaaacgg aacggcatac cgactttgcc
     2281 cataccaatt tccagctcgg cagcggtttg gttcattgcc tcgtggatat tttccaccgt
     2341 ccagtcattg caagcggtca atttttccaa taattttgca agtggagcaa cggcttcggc
     2401 tttgaagttt ttagcagcag ctttttcgtc gtaagcctta aattcttgat agaaatagcg
     2461 gctgctttcg gcaagctctt ttaaggtttt gcaacgttcg cccagtacag ggataatttc
     2521 ttccaatttt ggaccgcttg tgaaatcaat gccttgagtt tgcatatgcc attcaagatg
     2581 ttttgccaca taacttgggg caagactgcg gatatagtgt tggttcaacc attgtaattt
     2641 ttcagtgtta aatgcacttg ccgatttact gactgaatga atgtcgaaca gctcgatcat
     2701 ttcgtcacga gagaaaatct cttggtcgcc gtgtccccag cctaaacgca caaggtagtt
     2761 aattaaggct tccggtagat agccgtcatc acgatattgc attacgctca ccgcaccgtg
     2821 gcgtttggag agtttttgcc cgtcatcgcc gttgatcatt gaaacgtggg cgtaggttgg
     2881 gattggtgct cctaatgctt tcaaaatgtt gatttggcgt ggtgtattgt tgatatggtc
     2941 ttcaccccgc acaacgtgag taatgcccat atcccagtcg tccaccacca cacagaaatt
     3001 gtaggtcggc gagccgtcag tacggcgaat aatcaagtca tctaattcgc tattggcgat
     3061 ttcaattcgc ccacgcaccg catcgtcaaa tactaccgag ccttcggtcg ggtttttgaa
     3121 acgcacaaca tgtggttggc tcgggtcgtt ttgcggattg tgtaagcagt gctgatcgta
     3181 tttcgctttc tctttatttg cttcttgctc tgcacgtact tcgtctaaac gttctttcga
     3241 gcagtagcaa cggtatgccg tgccggcttc taacatttgg tcgatcactt ggttatagcg
     3301 atcgaaacgc ttggtttgaa agtatgggcc gtgttcccac gccaaatcca gccattccat
     3361 accctctaaa atagcggcgg ttgcctcagg ggttgagcgt tcaagatcgg tatcttcaat
     3421 acgtaacaca aattcaccat cattatgctt agcatataac caagagtaga gcgcggtcct
     3481 cgccccacct acgtgcaagt agccagttgg gctaggtgca aaacgggtac ggacttttac
     3541 attcggatct aaggggaaaa gggtttcaat tttcatttta tattgcctaa ttgatgattc
     3601 ttaagaaaaa cttgtctatt ttactacgct tgagggtgaa tcatagtaaa aaattaaatt
     3661 tgcggggtaa aaaatcagca aacggggtaa aaagaacaaa aagggtttga cgaaacagca
     3721 aaaatctcta taattcactt ccacaacagc gggcgattag ctcagttggg agagcacctc
     3781 ccttacaagg agggggtcac tggttcgaga ccggtatcgc ccaccacttc aacttaagtg
     3841 tttcgttgtt gtatcacaat ctaattttga aaacgggcga ttagctcagt tgggagagca
     3901 cctcccttac aaggaggggg tcactggttc gagaccggta tcgcccacca cttcaactta
     3961 agtgtttcgt tttcaaattc cctttgattt taagtctcaa gtgggcgatt agctcagttg
     4021 ggagagcacc tcccttacaa ggagggggtc actggttcga gaccggtatc gcccaccact
     4081 taagactaaa atcataaact tcaaatggcg atttttcgta tctgaagggc gattagctca
     4141 gttgggagag cacctccctt acaaggaggg ggtcactggt tcgagaccgg tatcgcccac
     4201 catctattta gtatcaaagc ctaaaactta tatcataatc taataacccc tttaaagtca
     4261 taactaaaaa gggaaaataa attcagatgg cctgttgcat ctgcataaat gcctttctac
     4321 gtgcagaaat taatcttttt ctatctttaa tttgcttaat ttgacgcagg cgtaatttcc
     4381 ttgtcagtag ggatttcttt ttcttcaatt ttctcataag aagaattctc ctgttttatt
     4441 tgaccatctg gtaaattttc ttgttcttgc atcttttgct cttcaactcg ttgataatta
     4501 ataatactac cataataacg ccgtatattt tcaacatact gtaatgcttc atatcctcga
     4561 gcatagccgt attttagatt agcataataa cgtttttccg caagcaatgg cagattcttt
     4621 ttaacatcaa gccaattatc cggatcacca ccaagttgtt ttgttaatcg acgaagatcc
     4681 aacaagtgcc ccaatcccat attatacgct gctaggctat accaaattct atctgcttga
     4741 ggaatagttt ccggcatttg tctcattagc atatgtaaat attcagatcc cgctttgata
     4801 ctttgtgcag ggttagtcct atcagaaatt ttcattctat ctgccgtatc ttttgtcagc
     4861 atcataattc ccctcactcc ggttggagaa gttgcattag gatcccaatg agactcctga
     4921 taggcgatag ccgccagcat ttgccattct aattcacctt tatgtgcccg aaaaaggggt
     4981 tcatatttag gtaaaatagt tttaattgca ttcaaatagc tc
//
LOCUS       DANLXB010000172         5007 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLXB010000172 DANLXB010000000
VERSION     DANLXB010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5007
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(2..574)
                     /gene="pdxT"
                     /locus_tag="PXD41_002154"
     CDS             complement(2..574)
                     /gene="pdxT"
                     /locus_tag="PXD41_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL6289649.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            complement(574..1446)
                     /gene="pdxS"
                     /locus_tag="PXD41_002155"
     CDS             complement(574..1446)
                     /gene="pdxS"
                     /locus_tag="PXD41_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL6289650.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            1657..3060
                     /locus_tag="PXD41_002156"
     CDS             1657..3060
                     /locus_tag="PXD41_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL6289651.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
     gene            3444..4983
                     /locus_tag="PXD41_002157"
     rRNA            3444..4983
                     /locus_tag="PXD41_002157"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         1471 a          997 c         1122 g         1417 t
ORIGIN      
        1 tttacttatt ttttcggcac atttccacaa aatagcggtg aaaacttaaa tcattattca
       61 cttcgggatg gaaggatata cctatctgat tttggtattt tactccaaca atcttaccgc
      121 ttatcttggc taaaatttct acatcttttc cagtgctttc tatataaggc gcacgaatga
      181 atgtgagagg aattttaccg agatatttaa cttcttcttc tactaaaaac gagcctaatt
      241 gccttccgta agcattacgt ttcactgtta caggcaaagt agccaaatgt tttttatcgt
      301 cgtttaccaa attttccgca agcaaaatta aacccgcaca agttccaagc gttggcaagc
      361 catttaaaat tttttgacga agcggctcaa gcaagcctaa ttcacgtaat aatttacctt
      421 gaacagtcga ttcgccacca ggtaaaatca gaccatcaaa atcttggttt aaatcagcaa
      481 gttgacgaat ttccatactt tcaaccccta gttgctggag tttatcagta tgctcgctaa
      541 atgcaccttg cagagcaaga atagcaattt tcattagaca cctcttgctg ccattagcaa
      601 ttcaatctct tgctcattaa ttcctaccat tgcttcacct aaatcttcag aaagctccgc
      661 aagtaattta ggatcgttgt agttggtaac agcttgtaca atggcccgcg ctcgtttagc
      721 aggatcgcct gacttgaaaa tacctgagcc aacgaagact ccttctgcac ctaactgcat
      781 catcaatgca gcatcggcag gggttgcaac acctccagca gcaaaggtga caacaggcaa
      841 tttttggtac tgatgtacat attgtactaa atcaaatggt acttggagct ctttagctac
      901 gtgataaagt tcatctgtgg tatgtgaaac caagcgggca atttcttgtt tcattttgcg
      961 aagatgatgt actgcttgca ccacattgcc tgttcctggc tcgcccttac tacggatcat
     1021 agcagcgcct tcattaatac gacgtagggc ttcgcctaaa ttttttgctc cacatacaaa
     1081 tggcacttca aatttacgct tgttaatgtg gaaggtatca tctgcaggag aaagcacctc
     1141 actttcgtca atatagtcaa tttcgatcgc ttgcaggatt tgtgcttctg taacgtgtcc
     1201 aatacgtact ttcgccatta caggaatgga taccgctgct tggatactct ttatcatctt
     1261 gggatcactc atacgagaaa cgccaccagc tgcacgaata tctgcaggaa ttctctctag
     1321 tgccattact gcacaagctc cagcttcttc cgcaatgcag gcttgctcag gggtagttac
     1381 atccataatt acaccgcctt ttaacatttg agcaagttgt ctgtttaaat catagcgatt
     1441 agtcattgta ctttttcctt ctaattgttg aataattgaa cttttcgtag tttcgattag
     1501 ctcggcatta agtttatttt tatattcgct ggatgcgagt gttcatctac caatttaaat
     1561 acactcagcc aatttgagtg aggaaacagc atgtattgta atttaatctg aactgtttaa
     1621 aatgaccatt ttatgttttt cttatcatgt cagattatgc ttacctacac ttttaacaca
     1681 caagaaggca ccgctctcta tgagcaactt taccgttttc taaaaaacga cattgaaagc
     1741 aacatactta tagcagggga taaactgccg tctaaacggg cttttgcaaa gcatttaggc
     1801 atttcagtaa tgacagtgga aacagcttac caacagttag tagcagaagg ttatgtgaat
     1861 actcagccta aaaaaggctt ttttgtgaat gctttaaatt taccagaaaa aaaggaagcc
     1921 atatcagttc agctacaaaa aatcagttca gaacagtatg agaaaaataa aaaatggcag
     1981 gcagatttaa ctaatcgaca gactttagca gaaaattttc cgttttcggt ttggacaaaa
     2041 ttagtacgcg aagtgctgaa aacacaccaa agtgagctaa tggagcgtgc tgagagtggg
     2101 ggcgtatgga cattaaaatt tgcgatagcc aatcatcttc gagcctttag aggaatgatc
     2161 gttaatccaa cacagattat tattggagcg ggtacggagt atctttacgg tttgctcatt
     2221 cagcttctag gcttagataa acattatgca ctaactgagc ccagttacga taaattgcgc
     2281 agaatttatc acagttatcg cttatcaaca gccacagtat cgatgccatt ttcaatcgat
     2341 gagttaaatt caaagaatgt ggacgtgata catacctcgc catcacacca ttttccgaca
     2401 ggacacgtaa tgccgattgc caaacgttat gagttgttag cttgggttgc acaaaaagct
     2461 gaaagatata ttgtagaaga cgactacgac agcgaatttc gttttgtagg acaaccaatt
     2521 cctgcattga aatctattga tatgctcggg cgagttatct atatgaatac tttttctaaa
     2581 acgctctctt caactgtacg aattgcctat atggttttgc caccagaatt actgaatcgt
     2641 tttcagcagg aattagggtt ttatgcttct accgtttcca attttgagca atatattttg
     2701 gcagaattta ttcaacaagg ctattttgaa aagcatatca atcgaatgcg agcgtattat
     2761 caaaaaaaga gggataaatt actaaaagct ttcaagcaag gcaatttagc agaaaagatt
     2821 gcaataaaag aagaacattc aggcttgcat ttcattgtac agctaaacac aacattaaca
     2881 gaaaggcaaa ttttgcaggc agcagaagaa caaggtataa aatttgtcgc attgtctgct
     2941 tattatcaag ataaatctca aattcagcaa aatgctttta taattgggta ctctaattta
     3001 aaagatgatc agattaatta tgtagcagag agcctgaaaa aaattttaga caacgaatag
     3061 caagtatcaa aactgcttta atttttagca aattgcctta aaaacacgca agtggtaatt
     3121 attttagtga tttttgcaaa aaattaccaa attctccttg caaggcattt tgttttgcgt
     3181 ataatgcatg gcacacaacg acgcactgtt gtgaacgatt taaaattgat ttccagtgcg
     3241 tcgtttcttt ttgttcttta acaatttatc agacaatctg tgtgggcgct tgttgattga
     3301 cttgattgaa aaacattttt ttaattttga agtcttaata ggtgctaact agaaattcat
     3361 tactttcttt taacttaatt ttaattaggt ttaaatttgg aagtgcgatt ttatgtcagc
     3421 agtattgagc gattaaactt tttgaattga agagtttgat catggctcag attgaacgct
     3481 ggcggcaggc ttaacacatg caagtcgaac ggtagcacat aggagtttgc tccttgggtg
     3541 acgagtggcg gacgggtgag taatgcttgg gaatctggct tatggagggg gataactact
     3601 ggaaacggta gctaataccg cgtaatgtct taggactaaa gggtgggacc atttggccac
     3661 ctgccataag atgagcccaa gtgggattag gtagttggtg aggtaaaggc tcaccaagcc
     3721 cgcgatctct agctggtctg agaggatgac cagccacact ggaactgaga cacggtccag
     3781 actcctacgg gaggcagcag tggggaatat tgcacaatgg ggggaaccct gatgcagcca
     3841 tgccgcgtga atgaagaagg ccttcgggtt gtaaagttct ttcggtgacg aggaaggcga
     3901 ttgttttaat agaacagtcg attgacgtta atcacagaag aagcaccggc taactccgtg
     3961 ccagcagccg cggtaatacg gggggtgcga gcgttaatcg gaataactgg gcgtaaaggg
     4021 cacgcaggcg gttgtttaag tgaggtgtga aagccccggg cttaacctgg gaattgcatt
     4081 tcagactgga caactagagt actttaggga ggggtagaat tccacgtgta gcggtgaaat
     4141 gcgtagagat gtggaggaat accgaaggcg aaggcagccc cttgggaatg tactgacgct
     4201 catgtgcgaa agcgtgggga gcaaacagga ttagataccc tggtagtcca cgccgtaaac
     4261 gctgtcgatt tggggattgg ggtttaactc tggtgcccgt agctaacgtg ataaatcgac
     4321 cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg cccgcacaag
     4381 cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctact cttgacatcc
     4441 atggaatctt gtagagatat gagagtgcct tcgggaacca tgagacaggt gctgcatggc
     4501 tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc aacccttatc
     4561 ctttgttgcc agcgattagg tcgggaactc aaaggagact gccggtgata aaccggagga
     4621 aggtggggat gacgtcaagt catcatggcc cttacgagta gggctacaca cgtgctacaa
     4681 tggcgtatac agagggcggc gagccagcga tggggagcga atctcagaaa gtacgtctaa
     4741 gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta atcgcaaatc
     4801 agaatgttgc ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac accatgggag
     4861 tgggttgtac cagaagtaga tagcttaacc gaaagggggg cgtttaccac ggtatgattc
     4921 atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg gatcacctcc
     4981 ttaccaaaat cgagaacgac agcaagt
//
LOCUS       DANLXB010000173         5002 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.175, whole genome shotgun sequence.
ACCESSION   DANLXB010000173 DANLXB010000000
VERSION     DANLXB010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5002
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(99..2288)
                     /gene="yccS"
                     /locus_tag="PXD41_002158"
     CDS             complement(99..2288)
                     /gene="yccS"
                     /locus_tag="PXD41_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL6289652.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2332..2790)
                     /locus_tag="PXD41_002159"
     CDS             complement(2332..2790)
                     /locus_tag="PXD41_002159"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL6289653.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            2916..4190
                     /gene="thrC"
                     /locus_tag="PXD41_002160"
     CDS             2916..4190
                     /gene="thrC"
                     /locus_tag="PXD41_002160"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL6289654.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4269..4988)
                     /locus_tag="PXD41_002161"
     CDS             complement(4269..4988)
                     /locus_tag="PXD41_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL6289655.1"
                     /translation="MTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLPGAFTP
                     TCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPDGNGEF
                     TEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTMIKYLS
                     PNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITGKTSVP
                     QVFIGGKYIGGSDELAAYFAK"
BASE COUNT         1484 a         1138 c         1001 g         1379 t
ORIGIN      
        1 tcaaaaaaaa caaaacatca acaaaaaatt aacaaaacca taatattttt attgattttg
       61 tgaagcatgt cacattttat gatttaatta taggctcact accttacact cttgagctgt
      121 aatatactat ttaactgcgg taataactgc acgatcagtc tgagttgttg tatcaacact
      181 aaggcgaggt cattttgctt ttgctgattt tcttgctcaa attgggtgag gtcttggtcg
      241 atagcggtca atttttccga taattttgca aatgaacggc tctctgaggc aatttgcccg
      301 atgatgtttg ccacctctct ggcgtgtgag aagaacattg cggaaaaatc cacttgttga
      361 ttaatctctc ggctagcaat acggtaagcc cctaaggtgg aaatataacc cagcaaggtg
      421 taagcaatac ctaacaattt tggggcgaag gttaaatcgt tcgcatattt ttgtggttcg
      481 ctgtacatat tggtaatcgc attactcagt gccgataaat ggttatgcac atcacggcgg
      541 gcaatacggt aaggcagttg ctcgttataa ccaaactgca actgggcgat aatatggcgt
      601 aaatattgcc cactggcttt caagccgtta tgtaagttac gttgtaaatt taaatacttc
      661 caatccggcc ataagaatgc cactgccagc cacgcaatcg ctgtacctag taaggtatca
      721 agcattcgca ttaagatgcc gctttcaagg ctcacgcctg caatatcaag gcttatcatt
      781 accaacacag tgatataaaa ggttgaaaag ccataatgta ccaagcggaa aaaggtataa
      841 agcgaaccgg tcagtacgat tagcccaagc tgggcttcga ggctgagcgc cacgttaaac
      901 agttcaaaag agccaccaac cagcacgccg aaaattgtgc cgatcacacg ctgaatcagt
      961 cgggtcttag tagcagtgta attcggttgg cagacaaaaa tggctgtgag taaaatccag
     1021 tagcctttgc tatcaaagcc taaaatcggc acaatcgcac tgcacaacag caccactatc
     1081 gacaaccgaa cggcgtgtcg aaacagttgg gattcaaagg ttaaatgggc tttaattgct
     1141 tggctgatat tgcttaagcc ggtaatattt tcggcgatca agcggtgaga ttttgtgaaa
     1201 tttttactta acggttcaat atgctcacca ctgcttgagc cttgttcaat ctgggctagt
     1261 tgccgctcaa tattgcctaa attttctgca atagcacgcc agcgataagc acttttcaag
     1321 ccccgttctt gatgataatt caatgaatta agcaagccct gcaaggcttt ttcgccacga
     1381 acgccgtgtt catatacttc tctatggcgt aacgacattg caattttttg acacgccgca
     1441 gcctgtaatt ccagcacccg ttgaaagcgg aacattaaat cactgttact taattgttgg
     1501 aacagttcgt gatattgata atggctggaa cttgcccgct ctaaaatatc ttgagcggtg
     1561 aaatagtaac gcaacattcg ctgtgtccgt tgctgcttgt gctggcggct taggcggtag
     1621 aatagggcaa ctctggtttt atcaaaggca gccatcacct cactattggc tttcgccaag
     1681 gctagttgtt tggcagctaa atcgtcatca tcagggtcaa aataggcaga tttcgccagt
     1741 aaataatggc tcaacgcaag gtaggcggac gctaaattct cctgcacggt tcgattcggg
     1801 aaaatcaggt acaccaaaat accgaccaaa ccatagagta aggtgccaag taagatcatc
     1861 accacattgt gataccacaa tacttcgggc gtataagcca ggctgttata aaccgccaca
     1921 atcagcgtgc caaaagcaat ggtactatag cgttgcccga ttgcccctaa cattaccagc
     1981 aaaaaggtgc aaaccaccgc caccggcaca aacagccagc ccaaatggag cgacacactc
     2041 gccccaatcg aggaaagcga gaacgccact aggctgataa tcagattttt cgctcgtccg
     2101 attaggctgt tgtctaaatc caccaaaccg ccggcgataa tgcctaacat caacggcatc
     2161 gcaaaatcag aaataccgag ctgccaaatg ctgaccgccg caatgtttag cgaaataaac
     2221 atcggcaggg ttttaattac attttccgaa agccaactgt gttgtagata tcttaaaaat
     2281 ttattcatat ttgctcattt cgggcaggca caggacctgc ccctacctac actaccccaa
     2341 acgttctgcc aaatagccat cataatccgg cacattcacg ctgattgctt gattgaacaa
     2401 atccgcattt aacagaaaat tagcggtggt ttcgttaatc gccaccggaa tattccaaac
     2461 ggtcgcaatc cgcatcaggg ctttcacatc aggatcgtgc ggagcggcat tcatcggatc
     2521 ccaaaagaac accagcagat caattttctt ttctgcgatc agcccgccta attgctgatc
     2581 gccccccatc gggccgctta acaatgaagt aatttcaagc cctgtttctc tggcgagcaa
     2641 atgcccggta gtgccggtgg catatagctt atgcgaggca agttgggctt gatgagtttg
     2701 tgtccaacga attaaatctt gtttacagct atcgtgagcc actaaggcaa tctgtttttg
     2761 ttttgcgatg gttctgacgg tggttttcat ttttagctcc tttgcaaaat ttttcacaaa
     2821 tcataccgct tatttttcgc ttttgcattg actaatcacg gcttatggct aaaatcaggt
     2881 aaaaattcgc attttaaaac aaaggattaa ccgcaatgaa cttatacaac atcaaacacc
     2941 ctgaagaaca agtcaatttc gcccaagcgg tacgccaagg cttaggcaaa aatcaagggc
     3001 tatttttccc tgaagtgtta cctaaattag atagcattga tgaattattg gatttacctt
     3061 tggttaaacg cagccaaaaa attctttcag ccttaatcgg cgaagagtta ccgcaagaaa
     3121 ccttaaatgc aatggtaaaa aatgcgttca ctttcccggc accgcttgcc aaagtcaatg
     3181 atgatattta tgcgttagaa ttatttcacg gtccgacttt agccttcaaa gattttggtg
     3241 ggcgctttat ggctcaagcc ttagccaatg tacgaggaga cggcaaaatt actattttaa
     3301 ccgctacctc aggtgacacc ggtgcggcgg tggctcatgc tttctatggt ttggaaaata
     3361 tcaacgtggt cattctttac ccgaaaggca aaatcagccc attacaagaa aaattattct
     3421 gtaccttagg cggtaatatt cgcactgttg cgattgaatc cgactttgat gcttgccaag
     3481 ccttagtgaa acaagccttt gatgatgccg agctacgcca agcgattggt ttaaattccg
     3541 caaattccat caacattagc cgtttactgg ctcaaatttg ctactacttt gaagcagttg
     3601 ctcagttacc aaaagaaaaa cgagataacg tagtggtttc agtaccaagc ggtaatttcg
     3661 gtaacttaac cgccggctta attgccaaaa cattaggttt accgattaaa cgttttattg
     3721 cctcaaccaa tgccaatgac accgtgccac gctatttaca atcaggcaaa tgggaaccaa
     3781 acgcaaccgt tgcaaccctt tctaatgcaa tggacgtaag ccgcccgaac aactggccac
     3841 gagttgaaga attatttaaa cgcaatggct ggagtttgtc tgaattgggt tctgccgcat
     3901 taaacgatgc cgaaaccgaa gcggctttga aagctcaata tgcagaaggt tatctgtgtg
     3961 agcctcacgg tgctattgct taccaaagct tgaaagatca gctacaacaa ggcgaaaccg
     4021 gtattttctt atgcaccgct cacccggcaa aattcaaaga gtcggtggaa cacattttag
     4081 cgattgaatt gccgttaccg gaagcattag ataagcacaa caaactgcca ctgttatccg
     4141 atgaaatggc agcagatttt gcaacattgc gtgcatattt gttgaaataa atattcaata
     4201 atagaaaagg gattaagtat taaacttaat ccctcttttt atgcattaca agcggttata
     4261 tttgcctatt attttgcaaa ataagcagct aactcatcac taccgccaat atatttaccg
     4321 ccgataaata cttgtggcac agaggtttta cctgtaattg ctcgtacaga aattgtgctt
     4381 gcatcacgac ctaacacaat ctcctcaaaa gtatagcctt gctcttttaa taatgctttt
     4441 gcttttgcac agaacaggca acccggttta gtgataatcg aaacagactc tttagctgtc
     4501 caatttggac ttaaatattt aatcattgta tcggcatctg atactttaaa cggatcgccc
     4561 ggttcttgtg gctcaataaa cattttttcc acaataccgt ttttcaccag catcgaataa
     4621 cgccaagaac gtttaccaaa cccaaggtca tttttatcaa ctaatagccc cataccttct
     4681 gtgaactcac cattaccatc aggaataaca gtaatatttt cagattcttg atctgctttc
     4741 caagcgttca ttacaaaggt atcattaact gacatacaga tgatatcatc tacccctaat
     4801 gccttaaatt cacaagctaa ttcattatag cgaggcaaat gtgttgatga acaagtcggt
     4861 gtaaatgctc cgggtaatga aaacacaacc accgttttgt tattaaataa ctcatcggtt
     4921 gtgacatcaa cccaagcatc gttttgacgt gtacgaaatg ttacactggg tactttctga
     4981 cccgtcatat ctttaaaaga ca
//
LOCUS       DANLXB010000174         4993 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLXB010000174 DANLXB010000000
VERSION     DANLXB010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4993
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(86..649)
                     /locus_tag="PXD41_002162"
     CDS             complement(86..649)
                     /locus_tag="PXD41_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL6289656.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            799..3396
                     /gene="mutS"
                     /locus_tag="PXD41_002163"
     CDS             799..3396
                     /gene="mutS"
                     /locus_tag="PXD41_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL6289657.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            complement(3444..4898)
                     /locus_tag="PXD41_002164"
     CDS             complement(3444..4898)
                     /locus_tag="PXD41_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6289658.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
BASE COUNT         1308 a         1054 c         1199 g         1432 t
ORIGIN      
        1 tttaagactg aggctttaga taaaagttca atcggtaggt ataaatggct cggttgtggt
       61 taaaacaacc gagtattgag gctcactaga gaagtaacat actgccccat ttgataatat
      121 cgaagaagaa tttattatca ttggtggcaa ctttatcgcc tgatttccct tcttggctat
      181 tggtttcttc gatcataccg ctttgatact gcccttttac cactgccaaa tcattttttg
      241 cattggtgcg taaggtcgca cattgttttt tcggtaacgc ttcaaccgct tcgttatttt
      301 tcagtttttt gaataaatat tgagcgtaac ccattgattt ttcatcattt tgaatgattt
      361 ttacatactg ctccccgata atctcttcaa gcggatagaa aaatacatat tgtgagaaaa
      421 tataagaatc ttctttggaa aaatgctctt gctgaatacg ggttaaattg gggtagatac
      481 actgttttgc ctgttcgctg gcaattaccc atttttgagc attttcttcc gaaagcacat
      541 aatcggcatt ggcaaattcg cccgggaatg cttccggttg ttgcggttca ttgctgctac
      601 aagccgccaa taataagcct gtagaaagta gcactatttt tcttaacatt ctgacctctg
      661 ttttaaaaat ttggtgcatt gtaacaaaaa aacagcggct gaccattgca aattttcagc
      721 gaaaaatgac cgcttgtttt tatcccttgg ctgaatctgt taaactatca gcaatgattt
      781 ctcacaataa atagactgat gacacaagat ttctccaccc atacgccaat gatgcaacaa
      841 tatttgcaac tcaaagctca aaatccggac atactattgt tttaccgaat gggggatttt
      901 tatgagctgt tttatgatga tgcgaaacga gcggcagcat tgttggatat ttcgctcacc
      961 aagcgagggc aatctgccgg tgagccgatt ccgatggcgg gtgtgcctta tcacgcagtg
     1021 gaggggtatt tggcgaaatt ggtggcgttg ggggaatcgg tagcaatttg tgaacagatt
     1081 ggcgacccag caacctcaaa agggccggta gaacgcaaag tggtacggat tgttacgccg
     1141 ggaacagtta gcgatgaggc attgttaccc gaacgccaag ataacttggt ggcggcagtt
     1201 tacgaagaaa aaggcacatt tgcgattgct acgctagata tgacctccgg gcggttttta
     1261 atcagtgaac ttgctagcaa agaggctcta tccgccgagt tacaacgtgt acaaccggca
     1321 gaaattctgt atgcggaaga tttttccgct gcctcaattt taacgaatta caaagggtta
     1381 cgccgccgtc cggtgtggga atttgagctg gtaacggcga ttcagctgct aaatcgccaa
     1441 ttcggcacgc aaacacttgc cggatttggg gtggaaaaag cggtggtggc actttgtgct
     1501 gccggctgtg tcttgcatta tgcccaagaa acgcaacgca ccgctttacc gcacattaac
     1561 gcaattcatt tggcacaaca tagcgatact attttgctcg atgcagctac tcgtcgcaat
     1621 ttagagctga cccaaaactt agcgggtggc acggaaaaca cgctggcggc ggtgttagat
     1681 aaatgtgtga ccccaatggg gagccgtctg ctcaagcgtt ggattcatca gccgattcga
     1741 gattgtggta aattacaagc ccgacaaaag gcgataacag cattgataca atatgagcga
     1801 atgtcggatt tacagccgtt attacaacaa gtcggcgata tggagcggat tctcgcccga
     1861 gtggcgttgc gtacggctcg ccctcgtgac ctcacccgac tacgcactgc attggctcag
     1921 ttaccggaaa ttgcaaaaaa ttcacaaaat ctgaccgcta gtatcgatca gcttttggct
     1981 caactggcgg atttcagccc gttacacgat ttgctggagc gggcgattat cgaaaaccca
     2041 ccacaactca ttcgtgatgg tggggtgatt gcagaaggtt ataatgccga gcttgacgaa
     2101 tggcggcaac tttcggacgg ggcaacgcaa tatctggaaa atttggagat cagagaacgt
     2161 gaaagcaccg gcattgattc gctgaaaatc ggctttaatg cggttcacgg ctattacatt
     2221 cagatcagcc aagggcaagc acacaaagcc ccgattcact atgttcgccg ccaaacgctc
     2281 aaaaatgcgg agcggtatat tatccctgag ctgaaaactt acgaagacaa agtgctgaaa
     2341 gcaaaagggg catcgcttgc ccttgaaaaa cagctttatg atgaactgtt tgatgtgtta
     2401 atgcctcgct taggcgaatt gcaattagcg gcgatgatgc tgtctgaact tgatgtctta
     2461 accaaccttg ccgagcgagc tgatagttta ggctatgttt gcccgagctt tagcccgatg
     2521 cgaatggtga atattaaagg cggcagacac ccggtggtgg agcaggtttt aaccgagccg
     2581 tttattgcca atccggtgtt tttaaattcc caacggcatt tattgattgt gaccggcccg
     2641 aatatgggcg gtaaaagcac ctatatgcgg caaattgccc tcattacatt gatggcgtat
     2701 atcggcagtt ttgtgccggc agaaagtgcg gaaatcggcc cgattgaccg tattttcacc
     2761 cgaattgggg caagcgatga tttagcttca gggcgttcaa cctttatggt ggaaatgacc
     2821 gaaatggcga atattctgca tcaagccacc gaaaacagcc ttgtgctgat tgatgaaatc
     2881 gggcgaggca cttctaccta tgacggctta tcactggcgt gggcgtgtgc cgaatggctg
     2941 gcgaagaaaa cccagtcact cactttgttt gcaacccact attttgaact taccggcttg
     3001 ccgaatcagc tcaaaggggt ggcaaatgtg catttagacg cgcgtgaaca tcaagacagt
     3061 attgtgttta tgcactcggt gcaagagggg gccgccagca aaagttacgg cttggcggtg
     3121 gcagccttgg cgggtgtgcc aaagcaagtg attcaactgg caaagcagcg tttggcacat
     3181 ttggaggaaa tttcccacca aaccaaacaa gcaaacgaac atccacaggc ggatttgttg
     3241 ttttccgatg gttttgattt gcaaaaaaat gaagcaattc aaccgcttgt agtagaaaat
     3301 gaagttgaaa aagccctgaa agcccttcag cctgatgaac ttaccccaag acaggctttg
     3361 gacgagttgt atcgcttgaa aaaattgttg gggtaaattg aaaaaataac taagaaatcg
     3421 ccccgtttaa ggggcgtttt tgtttagaac gtatgtgaaa actcaatata gacacggttt
     3481 ttgtcataac tatagaagct atgattgctt tttaccttgt tatattgcca cgttaagcga
     3541 ggggtaatac ccttaaaatg caaggctctg tgccagatgc tggcttgcac accatattca
     3601 ctgttacgtt gtgtaatttg gaaaatcggc attggggctc ggtattgttt gcgggcgtag
     3661 ctggcactta attgggttga aagcccgttt ttccactctt gtccccaacc aatagaaaca
     3721 cctcggcgaa taaagctatc atctaaatca cgggggctgg tgcggttaaa attcgccccc
     3781 acaaaccaat attgccggct gttagggtaa aaatagaggc tcggggcaat aaaatgataa
     3841 ttgccgtcta aatgttggcg gcgagtgtaa cgctgttccg catattcgta gctgattgca
     3901 gattgccact gtggagtaat ccaatattgc cagcgggcat tcacaccgcc tgcgttggag
     3961 tagcgtttgg tgctttcggt ttggcttgag ccaccggcat accacatctg ctcaaaaaac
     4021 ggcaacaagg tgattttttg ttttgcattt tgataaccca agccgaggct ttctctgagc
     4081 gaatattcgt tatatttttt gttattccag taatatttgc cgtttccgtt taaacgaaac
     4141 tcgtggaaga aaccattgcc ccaagaccac tttttatccg cctcaaagtg aaagccgacc
     4201 ccttgggcgg attctttttt cggtgcagtc cagttgccat aggtcgtgcc tgcatttgga
     4261 gcattgttga tattcgggtc attcaaatag gttaagccgc cttgaaaact ccattgatct
     4321 tgcttgccaa tcgcctccaa atagctattg accgcatttg caatttcttg cggtaatttg
     4381 tccgcttgta acttataaaa ttgagcctct gcggcttcat tttcccgatt ttcaaacaat
     4441 gcaaccgcta attgcatacg gattggctga ttttcagggt attttgccag tagctgacgg
     4501 tagcctttta ttgcctctga ataattttgt tttgctttgg cattaactgc ctccgcccat
     4561 tgtacaactt cgctgttttg tttactggcg ggtaattgtt gataaatagg cagtaagaat
     4621 tgaacattct cagtgtggtt agtgaccaac gcagttagca ttgccgagtt gagcaactca
     4681 ggctgttgaa gcagctgttg gcttgaaata gagatcgatt gccggtgagc ctgtgcatta
     4741 accgcttgtg gtttggcttg aggttcaggc ttttctaatg tatgtaggtt tttctgcatt
     4801 cgctggttat ccattttttc ttgaagttga gccggtgtgg tttccgcaaa tgccaggttt
     4861 gaggtaagga ttaaaagcgt tgagactatt tttttcataa agctatcttt tatttgaata
     4921 gaaaaggcta tttttcaata gcctttagtg aagagttttg aggttgtttt gctatatttt
     4981 tcattaagtt aaa
//
LOCUS       DANLXB010000175         4955 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLXB010000175 DANLXB010000000
VERSION     DANLXB010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4955
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(73..783)
                     /locus_tag="PXD41_002165"
     CDS             complement(73..783)
                     /locus_tag="PXD41_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL6289659.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
     gene            complement(752..898)
                     /locus_tag="PXD41_002166"
     CDS             complement(752..898)
                     /locus_tag="PXD41_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289660.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            complement(1016..2233)
                     /gene="fabB"
                     /locus_tag="PXD41_002167"
     CDS             complement(1016..2233)
                     /gene="fabB"
                     /locus_tag="PXD41_002167"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL6289661.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            2494..>4955
                     /locus_tag="PXD41_002168"
     CDS             2494..>4955
                     /locus_tag="PXD41_002168"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL6289662.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLIS"
BASE COUNT         1615 a         1002 c          809 g         1529 t
ORIGIN      
        1 caaagttttc actaaaaatg accgcttgca ggcaataaaa aagtgcgttt ccgcactttt
       61 tactaaaatg atttaattac tcaaccaatg ctcaccgttg ccattagctg gtggattaat
      121 cggttggtta ttattcttac ctggaataat aatttgaggc tgatcgtaca tacatttgtt
      181 gttcgacaat atatcacagg gaatagcaca tacggcaggg gcagaaagaa gacaacttga
      241 accacctttt tgattacaat tctctaatgc attttcttca gcaagactac taacgatacc
      301 atacccaaaa tcctcgaagc cttgaccatc tttataacct tgtgcaaaag caaggcacat
      361 attactaaac gataagatca tttggcaatt acgaccaccg ttcttttcac actgtttaaa
      421 cgcatcttgc ttcgcatttt ctaaattttt agacgtatta tcagtcaccc acatcatatt
      481 ttgttcaggt gacatataaa ttgatgacca taaacgaggc tgtgttttac gctttgctaa
      541 gtcctcttta ctggcaatgg ttaccgcttc tttatattca ccacatttaa actctttttc
      601 gacatcacca aaaccattca tttcacgaac agaagtgatt ttattatcag cgtcagcaaa
      661 aagatatgtc caagtcgatc cacctgtata aaccttatct gttgtcataa atatagtggt
      721 tgcattacga ccaacttcat aagtttgcaa attatacaaa gctagttgaa taaccataaa
      781 catagcttaa ttcattatct tttacgcatt gaaccgctgt atcaggtaaa cgtttacgtg
      841 caaaaaattc agatacatct ttaccacgcc aataaacact atctagtggc ttaatcattg
      901 tagaacaagc ggtcaaaaat aatgacaaaa taacaaatag caaagaactt attttgaaat
      961 ttataataat tacctcaaaa gaaaaaagag caagctttca cttgctcttt ttatgttact
     1021 tagaatagcg ttggaacact aaacacgcat tagtaccacc aaagccgaag ctgtttgaca
     1081 tcacggttgt taatgctttg tcttggcgtt cagtcacaat attcatacct tgtgcttgtt
     1141 catcaagggt ttcaatatta atgcttggtg caataaaatt attatctaac attaataatg
     1201 aataaattgc ctcgtgcgca cctgctgcac ctaatgagtg tccggtcatt gatttggttg
     1261 atgaaattgc tggcgtttta tcaccaaaga cattacggat cgcccctaac tcttttacat
     1321 cacccactgg agtagaagtg ccgtgtacgt taatatactc gatttcacca tttacagttg
     1381 ccatcgcctg tctcatacaa cgctcagcac cttcaccact tggcgcgacc atatcgtaac
     1441 cgtctgaggt tgccccatag cccacaattt cagcatagat tttggcacca cgagcaagag
     1501 cgtgttctaa ctcttccacc acaaccactg caccaccacc ggcaatcaca aaaccgtcac
     1561 gattagcatc ataagcacgg ctagcttttg ttggtgtttc attatattta gttgaaacag
     1621 cacccattgc atcaaactcg gttgcacatt cccaagaaag ttcttctgca ccacctgcaa
     1681 acaccacatc ttgtttacct aattggatta actccatcgc gtgtccaata cagtgtgctg
     1741 aagtcgcaca agctgagctg attgaatagt ttacaccacg aattttataa ggtgttgcca
     1801 agcatgctga cacacttgat gccattgttt tggttactgc gtaaggccca acggctttca
     1861 caccacgtgg gccacgtact gcatcacaag ctacaagttg actgtgcgcc gagcctgtac
     1921 cagctccgat caccaaaccg gtacgatcgt ttgaaacttg ttcttcggtt aagcctgagt
     1981 cttcgattgc ttctttcatt gaaagataag cgtaagccgc agcatctccc ataaaacgat
     2041 agattttacg gtcaattaac tcagccggat ttaatttaat cgtacctgcc acttggctac
     2101 gcatacccac ttcagcaaac tcaggcacaa attcaatgcc tgatttacct gcttttagtg
     2161 attccaacac ttcttctttg ttgttaccga tactggaaat tacacctaat cctgtaataa
     2221 cgactctttt cattttgttt ccttcatcat tttgatctga aaaatacttg attcagctta
     2281 cacttgttca ctcaaataag ctactaaaac ttgattattt tacacaattt cattactggt
     2341 ctgaactctt tctatcaaga tagcggttga atttcagaca ttttttgcaa aatagggaat
     2401 gaaatttaat ttcccgattt tttaccctat tacataataa tcacttttcc gctaaaatgc
     2461 taaacagttc acactttagt aaggaaagct gacgtgaaaa cattaaccct gacagccaac
     2521 aaaataacag ccgtagaagg cgctgccatt ggggcgaacc aggggagctt cgcccaaaaa
     2581 ttaaactcta ctaaagcacg aattgatcaa cttaatgcat accgaataga acgagctatc
     2641 aatgctaata atcatcattt tatgcatgtt ttctctctca ttccattgct tattcatctt
     2701 aatcaccctg tgttaccggc ttatgttgaa aatgcaccac aagggatttg gcattttcaa
     2761 ctctctgatt atcaaaaaca atttctggtt tcttaccgtt ttgatgaagc aatctctgcc
     2821 gatcatttgg gcccccatcc cagctttgat gctctttatt cgatgggtag caccggtact
     2881 attacccaaa caagctgttc tgatttagat ttatggctat gctatccgaa ccattttaca
     2941 attgaacaat ataagttaat ggagctcaaa attaataaat tgcaagaatg ggcaaagaca
     3001 ttccaaatcg acatcaatat ttatttaatg aacccagaac aatttaagag ccaaacttat
     3061 aacagtagcg taaccgatga acacagtggt tcagcacagc atttttttct attagatgaa
     3121 ttttatcgtt cagctatttt acttgccggt aagcgtttac tctggttgca tttacataaa
     3181 aatgaatacc aaaatgttca caataaccct gaaattgact taacggaatg gattgatttc
     3241 ggcgattttt ccagcctttc aaccagtgaa ttttttggtg caagcttatg gcagctctac
     3301 aaaggaatta ataaccctta taaatcggca attaaaattt tattgctcga atgctacgct
     3361 cacacttatc ctaaaacaaa gctcatctcc aaagaattta agaaaaaact actaagtgac
     3421 aatgctttgg aatatcactt tgatccctac ttagccatgc ttgaattggt aacagaacac
     3481 ttaagatcac gcaaagagtg ggtgaaatta gaccgcttgc gagtctgttt ttatgcaaaa
     3541 gcggttgagg gagaaataaa taacaactgg agaagtcgtg atttagacga gctggttaac
     3601 caatggtctt ggtcagaaaa acaaattcaa ttacttcaaa accgtcaaca ttggaaaatt
     3661 aagcaagtga tgaatcatga gaatatgctg attgatcatt tactacaaag ttatcgaaat
     3721 ttaattcatt ttgctcgaaa atttcatatt aatccgagca ttatgacaaa tgatactgat
     3781 attttaatgc gaaaacttta ttctgtattt gaagcacttc caggaaaaat atctttaatt
     3841 aatcataaaa tatcgtccaa tttagcagaa aaagcaatta catttattga agctaaagtt
     3901 ggatctgcgt tacaacccgg ttggtattta gttaatcagg cacctaaaag tcgttatgac
     3961 tctgaaaatc gttatgtcca ttataataaa agcccgatta agcttattgc ttgggggtat
     4021 tttaacggca ttattaacgc agcaactaat ttacatactg ttagccctaa tttagatatc
     4081 gagaaattgc gacaatttat caccgacttg cgcttatctt tcccaattca agcgccggaa
     4141 gtgaccaatg atgacatgca tcaccctaat gaaattcgca atttggttat agcgcttaat
     4201 ttagtacaag atccaaccga acatatcgat gaactaccaa aaaaagttta tccaagcgat
     4261 ctgtttaatt ttggtaaggc acaaaaaacg ttagttggta gtgtgagcat tatttatcga
     4321 aatgtatgga atgaaattcg aactcaacat tttgacggtg aagatgctat tttaaaagca
     4381 ctaaaattgg tatccaatcg aatttatcaa ggaaattctt cacctcaatc agttaatgtt
     4441 ttttgctata gtaaatatct acgtagtgag ttacgtgatt ttgtggcaga tttagttcat
     4501 aaatgtatta caattcagac tggttgttta ctgcaagaga atgaatttag cactttaaaa
     4561 gtagcaggaa aaacctggca gtttcttttt cataaaaaaa catttagcat taaacaaatt
     4621 gatgaacaac aagcggttga aaatttaaat tcttttgcaa aaaccaagca aaatgctaaa
     4681 agcgaaaatg aaaagaaaaa agaatttccg cagcaaatta gtgaatttgc cagtgaaggc
     4741 tttttacagt ttttctttga agacaatgtc gataatagtt ttaatgtata tgttgtagat
     4801 gaacgtaata atgtcgaaag ttactataac tgtttcggca ataaagaaga gaaaatcagg
     4861 aaaatcaata aattacaaaa tgaaaaacaa ttaaaaacag aaacaccagc atcatttgga
     4921 agctttaatc atccacaatt ttatcaactt atttc
//
LOCUS       DANLXB010000176         4938 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLXB010000176 DANLXB010000000
VERSION     DANLXB010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4938
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..583
                     /locus_tag="PXD41_002169"
     CDS             <1..583
                     /locus_tag="PXD41_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL6289663.1"
                     /translation="YTTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGK
                     KDFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGV
                     RMAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVI
                     IAVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            667..1437
                     /locus_tag="PXD41_002170"
     CDS             667..1437
                     /locus_tag="PXD41_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL6289664.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXD41_002171"
     CDS             complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXD41_002171"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6289665.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2675..4930)
                     /gene="nrdA"
                     /locus_tag="PXD41_002172"
     CDS             complement(2675..4930)
                     /gene="nrdA"
                     /locus_tag="PXD41_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005587493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6289666.1"
                     /translation="MVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQF
                     YEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHLYEHVK
                     KLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEI
                     YESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFS
                     SCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPF
                     YKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQI
                     NKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRKVKAVE
                     LFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDE
                     QGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRAL
                     GVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQT
                     TYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQIS
                     NATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLVGIMQK
                     FVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQDDL
                     DEGCAGGACKI"
BASE COUNT         1526 a         1039 c          916 g         1457 t
ORIGIN      
        1 ttataccact attatgcaac gcatttcagg tgcaaaacag atagattcac tcacggttaa
       61 aattaaagat gatattgaaa gccaaactgc cgaaaaaagc attgccgaat tgttagtagc
      121 taaacacggc aaaaaagatt tctttattat gaatagtgat acgatcaaac aaaccattac
      181 cagtaccacc aatacaatga ctttgctgat ctcctctatc gcccttattt cgctgattgt
      241 cggtggtatc ggggtaatga atattatgct cgtttccgtc accgaacgca cccgagaaat
      301 tggtgtccga atggcgattg gcgcaaaaca acgcaatatt ttgcaacaat ttttaattga
      361 ggcggtggtt atttgcctaa taggtggtgt gattggcatt ttactggcaa gcgctattat
      421 ttgggcattt aataccttag gtacgaattt taaaatgatg ctttcaccgg aatcggtgat
      481 tattgccgtg ctctgctcta cacttatcgg tgtggtattt ggctacattc cggcaagaaa
      541 cgccgcccaa ttaaacccaa ttactgctct ggcacaagag taaatgcgat aactatctgc
      601 tacactgtag gggcaaaaaa ttttttgccc ctacatccat tattatgcca agtttaagga
      661 gataaaatga caataaccaa tactgaacta gaacaaattc tgaacaccaa actcaacagc
      721 tccgccatta acgactatgc cccaaatggc ttgcaagttg aagggaaaag agagatcaaa
      781 aaaattatta ccggtgtgac agctacactt cccctgattg aaaaagcgat tgagaaaaac
      841 gccgatgcaa ttttagtcca ccacggttat ttttggaaaa gtgaaaaccc gtgcattcga
      901 ggaatgaaag gtaaacgcat taaacagctt ttagtgaatg acatcaatct ctttggttat
      961 cacctaccac tggatattca ctccgaacta ggtaacaacg cccagcttgc taagcattta
     1021 ggagtaaaaa atctacaagg tttagaagac agacctaatt caattccaat gtacggtgaa
     1081 ttagaaaatc cgatttccgc caatgaactg aaacaaaaac ttgaaaaaac gttacaacgc
     1141 accgttattt tatgtgatga atttgttcat agcccacaaa aaatgattaa aacaataggg
     1201 atttgctccg gcggaggaca aggctatatt gatttagcct ttgaaaaagg ctgtgatgcc
     1261 tttattagtg gcgaaatttc cgaacagacc actcactctg cccgtgaaca aggaatctat
     1321 tattttgctt gcggtcatca cgccacggaa cgagatggcg taaaagcctt aggtgaatgg
     1381 ttagccgttg aatatggttt agatgttgaa tttattgata ttgataaccc tgcataaaaa
     1441 atacaagcgg ttgaatttcc tgaaaatttt gcaatttgca aaaaatcact aaaaatcaac
     1501 cgcttgtata tcatagtcta aagttcaaaa tcgccaaaat cacggctatc tactttagca
     1561 tcaatctggc caaccaaata agaactgact tccacttctt gtggtgctac ctgtacatta
     1621 tcggaaacca accacgcatt gatccacgga atggggttgg aacgtgcctt aaatggtaat
     1681 ggtagtccaa cagcctgcat ccgaatatta gtgatatatt caatatattg caccaaaata
     1741 tcccgattta gccctatcat cgaaccgtct ttaaacaggt attccgccca cgctttttct
     1801 tgttcagctg cacttaaaaa aagctcgtag gcctcttggc gacattcacg tgcaatttct
     1861 gccatttcag gatcatcatt gccataggcc ataatattca atatatgctg agtgccggta
     1921 agatgtaatg cttcatcacg tgcaataaat ttgatgattt tggcatttcc ttccataagc
     1981 tgccgttccg caaaggcaaa tgagcaagca aaagagacat aaaaacgaat tgcttcaagc
     2041 gcattcacac tcatcataca gagataaagt tgtcttttta gactacgcaa actgacctca
     2101 caggtttttc catcaacctg ataactgcct tcaccataca aactatagag ttggctgtca
     2161 cgaatcaaat catcataata ggcggaaata tctttggcac gcttaataat ttcttcgttt
     2221 gtgacaatat catcaaatac tattgatgga tcattgacaa tattacggat gatatgtgtg
     2281 taagaacgac tgtgaattgt ttcgctaaat gtccaagttt caatccaggt ttcaagctcg
     2341 gggatagaca ctaatggcaa aagcgccaca ttcgggctac gcccttgaat ggaatccaac
     2401 aaggtttggt attttaaatt gctgataaaa atgtgctttt catgttcagg cagttgggca
     2461 tagtcaatgc ggtcttgtga cacatccact tcttccggtc gccagaaaaa tgagagttgt
     2521 ttttcaatca gtttttcaaa aatttcgtat ttttgttgat cataacgcgc cacattcaca
     2581 ttttgtccaa aaaacatggg ttcttttagt tgatcatttt tatgttgtga aaacgtagta
     2641 tatgccatgt tattctcctt tatttctgtt cttattaaat tttacaagca ccaccagcac
     2701 agccttcatc taagtcgtct tgcacatctt ctgctccatc acgggtattt tgatagtaaa
     2761 gggtttttaa cccgtattta tacgccgtta atagatcttt taataatact ttcatcggta
     2821 ctttagcttc tgcaaagcgg tttgggtcgt aatttgtatt cgccgaaatc gcttggtcaa
     2881 caaatttctg cataatccca accaaatgca aatatccgtc catattagga atatcccaaa
     2941 gcagttcata gtatgctttt aaacgttcat actccggcac aacctgcttt aaaataccgt
     3001 cttttgatgc tttaacacta atatagccac gcggaggttc aattccattg gtggcattcg
     3061 aaatttgcga cgaagtctcc gatggcatta aggcagttaa agtggaattg cgcaagccaa
     3121 attgcagaat atcctgacgt agttgttccc aatcataatg aagcggttct tgagttaatt
     3181 catcaatttc ttttttataa gtatcgatag ggagtaaccc tttggcataa gtggtttgat
     3241 caaaataagc acacgcccct tgttctttgg ctaaattcat cgatgctttt aataaataat
     3301 actgaatcgc ttcaaaggta cggtgagtta aattattagc actgccatcg gaataacgca
     3361 cttggttttt agctaaatag taagcatagt taatcacgcc tacacctaat gcgcgacgat
     3421 ttaatgagct gttacgtgca gctaataccg gataatcttg ataatctaat agggcatcta
     3481 gcgcacgaac cactaaatca gccaattctt ctaactcatc taaattgctg agtgtgccta
     3541 aattaaatgc cgataatgta cataatgcga tttccccttg ttcatcataa aaatgtgcca
     3601 gtggcttagt tggcaaagca atttctaagc agaggttcga ttggcgtatc ggtgcgacac
     3661 gaggattaaa tgggctatga gtattacaat gatcgacatt ctgaatataa attcgccctg
     3721 ttgaagcccg ctcttgcatc agtaatgaaa acaattctac agctttaact ttacgttgcc
     3781 gaatgctcgg atcttgctca tattgcaaat aaagttgctc aaatttagct tgatcagcaa
     3841 aaaacgcttc atataacccc ggcacatctg atggactaaa taaactaatc tcaccgcctt
     3901 taattaaacg ttgatacatc attttattaa tctgtacccc gtaatccata tggcgagcac
     3961 ggttttcttc cacaccacgg ttatttttta ataccattaa gctttctgct tccaaatgcc
     4021 aaatcggaaa atacacggta gccgctccac cgcgaacacc accttgagag caagacttta
     4081 ctgcagtttg aaaatgttta taaaagggaa tacagccggt atgaaatgct tctccaccac
     4141 gaatggggct acctaatgcc cgaattgcgc cggcattaat accgatccca gcacgctgtg
     4201 aaacatattt aacgattgca gccgaggttg cattgatgga atctaagcta tcatcacact
     4261 caattaacac acaggaacta aattgacgag taggtgtacg cactcctgcc ataatcggtg
     4321 ttggcaaaga aattttgaaa gtggaagtcg catcataaaa acggcgaata taatctaagc
     4381 ggcttgctgt tggatactta gaaaataaac aggcagctac gagtaaatac aaaaattgag
     4441 ccgattcata aatctctccg ctaacacgat tctgcactaa atattttcct tccaactgct
     4501 ttactgctgc ataggaaaac gtcatatccc gccagtgatc aataaatcca ttcattgtct
     4561 cccattcttc gggcgtatag tcgctcagca agtctgcatc atatttacct agcgcaacta
     4621 attttttaac gtgctcatat aaatgcggtg gctcaaattg tccataagct tttttgcgta
     4681 agtggaaaat cgccaagcgt gcggctaaat attgataatc tggcgtatcc ttagtgatta
     4741 gatcagctgc agccttgata atagtttcat gaatatctga agtgcgaata ccttcataaa
     4801 attgaatgtg agaacggagt tctacttgtg aaacagaaac attctctaac ccttctgccg
     4861 cccaagtaat cacacgatga attttatcta gattgagttg ctcgcgcgtg ccattacgct
     4921 ttgttaccat taaacttt
//
LOCUS       DANLXB010000177         4893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLXB010000177 DANLXB010000000
VERSION     DANLXB010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            5..1087
                     /gene="serC"
                     /locus_tag="PXD41_002173"
     CDS             5..1087
                     /gene="serC"
                     /locus_tag="PXD41_002173"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL6289667.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1144..2121)
                     /locus_tag="PXD41_002174"
     CDS             complement(1144..2121)
                     /locus_tag="PXD41_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL6289668.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2233..4800
                     /gene="glnD"
                     /locus_tag="PXD41_002175"
     CDS             2233..4800
                     /gene="glnD"
                     /locus_tag="PXD41_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL6289669.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
BASE COUNT         1585 a          960 c         1014 g         1334 t
ORIGIN      
        1 aaaaatgaca gagatatata acttcagtgc cggcccggca atgatgccga aaaaagtact
       61 cgaaaaagcg caacaagaat tattaaattg gctagaccaa ggcacatcag tgatggaagt
      121 cagccaccgt ggaaagctat ttatggagct ggcggcacaa tctgaagcag atttacgcaa
      181 gctgtataat gtgccggaca attatcgtat tctatttctt caaggtggtg caagggggca
      241 atttgcagcc attccaatga atttaatcgg taaaaaaggc aaagcgcttt accttaattc
      301 agggcattgg tcggcaacag cagcaaaaga agcacgtaac tttgcggaaa ttgatgaaat
      361 caatatttta gagactgaac cgcaacttaa agtgagtcgt ttagatttca gcgatattgc
      421 agagcaatat gattatatcc attattgcac caatgaaacc atcagtgggg tagaaatttt
      481 cgatattccg aatgtcggaa ataccccgtt agtggcagat atgtcgtcta atatcttagc
      541 ccgagggatt gatatcaaca aatttggagt aatttatgcc ggagcgcaaa aaaatctagg
      601 gcctgctggc attacgattg tgattattcg tgatgattta attggcaatg cacgcaaaga
      661 taccccatct atttggaatt atgcaactca gcgagatgct gattcgatga ttaatacccc
      721 gccaactttt gcttggtatt tatgttcttt agtgttccaa catttactgg cagagggtgg
      781 tttgaaagct actgaagaac gtaatcttgc taaagctaca ttgctttatg agtatttgga
      841 tagttcaaca ttctattaca atacggtagc acacgaaaac cgttccttaa tgaatgtaac
      901 ctttaccacg ggtaatgacg agctaaatgc aaaatttgtg gcagaagcga ccgcttgtgg
      961 tttacaggca ttgaaaggcc ataaagtatt aggtggaatg cgtgcctcaa tttataacgc
     1021 aatgccgatt gatggggtaa aagcactcat tgaatttatg aaggtatttg aacaacgtaa
     1081 tgcttaattc aagcttaaga atataaatta aagagccacg tttgtggctc tttgaatttg
     1141 gcactagccc gcagttttaa acaaatagaa attatagcct acataagcgg caaagagtaa
     1201 taagccctct aaccgattaa ttctgccacc ttctgtccga cgatagaggt tgatcccgaa
     1261 aatgaataat aagaaggtga gagccgacat catcaagaca tcgcgagaaa acacttccgc
     1321 tgaaacttgc attggttcta tagcaccggc aatccccacc acggctaacg tattaaataa
     1381 gttagaaccg ataatgttac ctaaagctaa atccacttct cctttacgag cagctgcaat
     1441 agaagaggct aattcaggta gtgaggtgcc taccgccaca atagtaagcc cgattaccaa
     1501 atcactcaca ccaaaaaatt tagccacttc aactgctccc cagactaaga attgggaact
     1561 aattactagc gatactaaac caataattag ccaaagaatg gattttccta atcccatctt
     1621 agcactattg gttaattctg catcaacatc taagcttaat gcatcatttt tacttttcat
     1681 tgcggtaata attgtccacg ccatatatac aaaaaacaca gcaagtaaaa taatcgcatc
     1741 aagttgagtg acgtttgcat cataaaccaa ataagcagaa agcagggtga cagccagtaa
     1801 aatcggcaac tcttttttta acacatcgga attaactgat agtggtttaa ttattgcggt
     1861 taaacctaaa atcagcgcaa tattggtaat gttagaaccg taggcattac cgagagcgat
     1921 acccggcgat ccgcttaatg cagaagatgc agatacgagc atctccggtg cagatgtacc
     1981 aaaaccaatg accacaatac cgattaacaa tggtgtcata ccaaaatggc gagccgtaga
     2041 ggctgcccct tccacaaaac gatccgcact ccaaactaat ataattaagc caccgataat
     2101 agcggcaaca gcaagtgtca taaactatcc ttttagatga aaaacataaa ggcattataa
     2161 gcattttagc caaaataaat ataggcaaac gaaaataaat gacctattat tttgccagtt
     2221 taggaagaga ttatgatgaa aaacagcaac gaattaaaaa cgcttttatc agcatttacg
     2281 gagcaacagc ggcaagcatt tcaatccgaa aatgtactca gcttacttgc acaacgtagc
     2341 caattttatg accaactact gcaagcactt tggcaagatt ttggactcgc tcaatatgaa
     2401 catattaccc tattagcggt aggggggtac ggacgtgagg agatgtttcc gctttcggat
     2461 ctggatatct tagtgttaac tgaaaaaccg ctagaagagg ctattcagca gcgtttaaac
     2521 gaactatttg ccttgctttg ggacagcaaa ctgcaacttg gcaccagtgt gcgtacgctc
     2581 gaagaatgta ttcagattgg gaaagcagaa atttcggttg ccactaatat gttggaaggg
     2641 cgatttttat tgggtaataa atcgctttgg ctaagattaa aagaagcact ttatcagccg
     2701 gatttctggg atattaaagc gttttttaga gcgaaaatgg cggaaaaaaa tgagcgttat
     2761 gcacgttatc ataatactag ctataacctt gagccagatc tcaaacatag cccgggagga
     2821 ttgcgagatc tgcatttaat ctcttggatt atgctacggc attatggtgt atcttctttt
     2881 gtcgatctcc tcaataaagg gctactttac ccggaagaat ataaggagct gatcgcagca
     2941 caagcggtac tttttcggat gcgttttgca cttcatttgc aactgaaacg ttacgataat
     3001 cgccttcggt ttgacagaca attacaactg agtgaaatat taggctacca aggcgaagca
     3061 aatcaagcgg tggaattaat gatgcgagat tattttcaag ccacaaaatc tatttcgcaa
     3121 ctgagccaat tattgttaaa cagttttgaa caagcctatg taaacgagtt gcaaaaaaat
     3181 gcacaaaaac aaccgcttga tcagtatttt tatcggcaag aacagcaatt gtttgtggtc
     3241 gaacgcaaaa tatttaaaac ccaacccaca acaatgttgg atctcttttt tcatcttact
     3301 aatgacccta cgttaatagc gaatgccgac accttacgtc agttgagact gtgtttacag
     3361 caacaacacg agcctatgtg ctttttgcct gaaatgcgag agaaattcgt acagcttttt
     3421 gctcaaccga aagtcataag ccgagcaata gttccaatgc accaactggg ttttttaagt
     3481 gcttatctac cgcaatggaa ggggatcgaa gggctaatgc aattcgacct attccatatt
     3541 tatacagtcg atgagcatac ggtcagagtc atgttaaatt tagaaaattt tagcgaagat
     3601 ccaagtcggg cgtttttccc actatgtcat cagctatttg caacgctttc tgagaaaccg
     3661 ttgctctatc ttgcggctct tttccacgat attggcaagg gtagagaggg cgaacacgct
     3721 caagttggtg cgctggatat gcgagaattt gcggaactac acggtttttc tcaagcacaa
     3781 atcaatgata tggtttggct ggtggcagag catttgacaa tgtcgatcac cgcacaaaga
     3841 cgagatatcc acgatccgca aatcatcagc gaatttgcaa aaaaagtgca aaatcagacc
     3901 gctttatctt cactactttg tttaacggtt gcagatattt gtgcaaccag tgagagcctc
     3961 tggaatgatt ggaaagcctc gctgtttacc caattatatc aatttacgct acagcaactg
     4021 gctcaaaatt tgaattatca agcagtggca caagagcatc gcttgcaagc attagaactg
     4081 atgaagttcg tgctttcagc tgatgagcga atagcattaa acgcattttg gcaaccttgc
     4141 ccggagcgtt attttcttca ccatacaccg actcagttgg tatggcacgc tctgcattat
     4201 gtaaaaactc gccggttgcc gatggtttta atcagtaatg aatatgcccg tggtggtaca
     4261 gaaatttttg tatgttgcca agatcaacct caactgtttg ctcgaatcgc ccaattactc
     4321 agccaaaaac gcattagcat tcacgatgca caaattatta ctactgaaaa tggtgtagtg
     4381 ttagacagct ttattgtaag tgagcgtgat ggtgatgatg atttaaccga tgagagatgt
     4441 atgcaaattc agcaggcgat gatgaaaatg ttaagcttaa ctgaaacagg cataaaattt
     4501 accaaaaaac cggtgaaaca tttgtcattt aagcgtaaaa ctcggctgcg ttttcttcct
     4561 ccgtcatcaa agcaacaaac cgaatttgaa ctttttacct tggatagaga agggttgttg
     4621 gcacaaatag gctatatttt taaccggctc cgattaaatt taattaatgc gaaaattacg
     4681 actattggtg aaagggtaga ggatttcttt gtggtcagta atgatcaagg aaaagcttta
     4741 tcggaacaag aacagttaga actaaaagcc attctaatta ccgaactaga tagtgaatga
     4801 aaacaaccgc ttggagtgaa gactgcaagc ggtaaatttt tcaacgtttt aggtaaatta
     4861 aatcacgagt taagagaggt tgagaattca aga
//
LOCUS       DANLXB010000178         4876 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLXB010000178 DANLXB010000000
VERSION     DANLXB010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1118)
                     /locus_tag="PXD41_002176"
     CDS             complement(<1..1118)
                     /locus_tag="PXD41_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6289670.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWV"
     gene            complement(1249..2277)
                     /locus_tag="PXD41_002177"
     CDS             complement(1249..2277)
                     /locus_tag="PXD41_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289671.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2289..3833)
                     /locus_tag="PXD41_002178"
     CDS             complement(2289..3833)
                     /locus_tag="PXD41_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6289672.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(3884..4822)
                     /locus_tag="PXD41_002179"
     CDS             complement(3884..4822)
                     /locus_tag="PXD41_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL6289673.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
BASE COUNT         1273 a         1175 c         1038 g         1390 t
ORIGIN      
        1 tccacccacc ttttctcctc cgccgatttt gctatcgctt ccaatactct ggagatttta
       61 tagccttctt caaaatcggg atacatcggg tcatcagcgg cgatgccgtt gatgaggtca
      121 cggatttcca ccgctttttg gtcgttaaaa ccgatgccgt gaccggcact cacacaaaaa
      181 gcagcgtagt cgggatgttc cgggccgact aaaatggttt tgaatccttg gcgggattta
      241 tcgtcatcgt gcaaatagag tttgagttct gccattcgtt cttgggtata gctgagcgtg
      301 cctttagtac ctgtaacgac ataggtcagc cccattttac gcccgcagga aatgcgggag
      361 ctttcgagcg tgcccattac cccattagca aatcgtatga gactacttgc ctgatcttcg
      421 ttttctactt tgattttttc tgctggattg tgcggactag ggcgttcttc aatcactgtt
      481 tgcatatcgc cgataacacg ctcaatgtct gaaccaacca aatagtgtgc gatactgaca
      541 atatgtgcgg ctaaatctcc caacgtacca agcccggctt tggctttgta gcagtgccaa
      601 tcaatcgggg tattagggtt ggcgagataa tcttcgttat gcgtgccgta gaaatgcacc
      661 acctcaccaa tttcgccgtt ttgaataatt tggcgagcca gttgggtggt tggatttttg
      721 atatagttga aaccgaccaa ggttttaact cccgcttgtt gagcggcaat caccatttct
      781 ttggcatctt gggcggtgag tgcaagcggt ttttctgaat agacgtgttt gccgtgttta
      841 atcgcttcta aggcaatttc tttgtgcaga aaatttggtg tacaaatgtc caccacatcg
      901 acattcggat cggtaaccaa ttttcgccaa tcgtcagtag cacgctgaaa gccaaattct
      961 cgggcttttt gatcggctaa tgcttggttg atttcggcaa ggtattccag ttggattttg
     1021 cctttaagtg gaaacagggt tggggcttga gcgtaggcaa tggcgtggca gcgaccgata
     1081 tagccggtgc caactaagcc gattttgatg gttttcataa tactatccca gtagggtgcg
     1141 tttgctaacg caccattaga attttcagtg cattggcaaa cgcaccctat aagaaagcgg
     1201 tctggttttg caaaattttt acaaaatcag accgcttgtg ttagctatct ataatgctcc
     1261 tcgtctgctc ttcgcatagg tgtcgaaggc aacggcaagg atgatgatta agcccataat
     1321 gatttgttgg tagtaagcgg aaacgtccat tagtactaaa ccgttaatca atacacccat
     1381 aataatggag ccgatgatgg tgcctgtgac tcgtccgtat ccccccatta gggaagttcc
     1441 gccgataacc actgaggcaa ttacacgtag ctcaaaagaa acgccggcaa cggattcggc
     1501 actgcctaaa cgggcggaga gaatgaaacc ggcaagtcct gccaatgctc cgatcaccac
     1561 ataaacactg actaaggtac ggttaatatt cacaccggct aaacgggctg cttccggatt
     1621 gccacctacc gagtacacat agcgtcccca gcgggtttta tgcaatgcga agtaaccgat
     1681 aatggcgact acggcaaaaa tcactaccgg caccggtacg cctaaaatat cgccacgtcc
     1741 ccaccagcgg taaccttcgt caaatccggc aattggcgag ccgttattta acacaagtgt
     1801 taaaccacgc caaattgtca taccgccaag cgtgataata aacggtggca gtttgagttt
     1861 agtgacgcct aagccgtgta accaaccaat gaaagtgcct aaacctaaac agatactcaa
     1921 acctatcagc cagctcattc cgccccaagc accggcttct agcgttaccg tattatcgcc
     1981 tttgataata taggccgcga acattgcggt aacagcaagg attgagccga cagagagatc
     2041 gatccctgca gttaagatga cgaaagtcat tcctaccgcc ataatgccga aaatcgacac
     2101 ttcggttaaa acgttataga tgttgcgttg cgataaaaat gccccgtttt gtgaagtgaa
     2161 gaaaataatc agtaagatca agaaaatcag tacgccgaaa cgttcaaaga aggcgataaa
     2221 atcgattttt cctttgtcat cgaccatacc catatttttt agaaattgcg ttgtcataca
     2281 aacctctctt atgctgccgc tttacgctga acgccaacag ccatcattga cattaatttt
     2341 tcttcggtgg catcatcgcc gtgaatttcg ccagttaccc gaccttcgga aagagtgata
     2401 atgcggtcgg aaatcgccat aatttccggt aaatcggagg aaatcactaa taccgcaaca
     2461 ccttgttttg ccatatcaaa cagcacttgg tgaacctcag attttgcccc aacatcaata
     2521 cctcgtgtcg gctcatcaac aattagtact ttcgggttga gtgccataca acgggctaaa
     2581 atcacttttt gctgattacc acccgataat ttgcgggctt caagttcgct acttgccatt
     2641 ttgatgcgta acgcttggcg gtaggtttcg attaaatcat cttctttttg attatcgaca
     2701 aacaagttac ccttcaataa tttgcttaaa atcggcaggg tcatattggt tttaatcggt
     2761 aaaccgagaa ctaagccctc ttttttgcga tcttccggca caagggcaac ccctttttcc
     2821 aaagcatcta acggcgaggt ggcagcataa ggcttaccgt ctaggctgat ttcatcagcc
     2881 gtataatttt ctaccccaaa caagcaacgg gcaatttcag ttcgccctgc gccaactaag
     2941 ccggcgatcc ctaatacttc accctcgtga atgttaaaag agacaccgtg gagagcaatg
     3001 ccgtgtggat cgaatgccgg tttttcccga tgcagatttt tcacagctaa acgtattggt
     3061 cggtgggtat ggtgagtctc ttctggtgga cggcgagtaa aggcaacttc acgtcctacc
     3121 atcattttaa taatttgatc gacattcaca tttttgactt caccctcacc agaatagcgc
     3181 ccgtcttgga aaacggtgaa acggtcgcat agggcaaaca cttcgtttaa gcggtgggtc
     3241 acataaatca cgctaatgcc acggcttttt aaatcacgca cgatttggtg tagtgtttcc
     3301 acttctttat cacttaaggc agcggacggt tcgtccataa taatcaactt agcgtttaag
     3361 gtcattgcac gggcaatctc gaccatctgc tgttgtgcca cacttaaacg ggaaacttgg
     3421 gtgtcaggtt tgatatttaa gccgagatta tccagcacta attgtgcttc ctcattcacc
     3481 gctttttcat tgacgaataa acctttcacc ggctctctgc ccaaaaagaa attttcagca
     3541 accgtcatat tcggtaacaa gttaaattct tgataaatcg ttacgatgcc tttgagttgg
     3601 cgatcaaacg gggaatcgct caaacttaag gtttcaccgt taaagataat ttcgccactt
     3661 gtttgtggct gagcgcctga aagtgctttt aataaggtcg attttcctgc accgttttca
     3721 cccaacaatg cgtgaacttc gccttttccc acagtcagtt tcacgccatt gagtgccata
     3781 acaccagaga aactttttgt cagatctttc acttcaagta agggagtaga catacaacct
     3841 ccgtaaaaaa acgccctccg gcctcagccg gaaggcagat aaattattcg ctgatttctg
     3901 caaaacgttc tgcttcttgc agattatctt tcaggataat ttttggcgga tagtccgcac
     3961 cgctcacttc tttgctctca cggatattgc caaccacttg ctctaatgcg gtgcttaccg
     4021 caaaacttgg gcgttggtca gcggtgagat acaaccagcc atctttcaca cgtgcaagag
     4081 cctcaggggt tgagtcaaag ccggttacta aaatatcgcc ggctttcaaa ccttggctac
     4141 gcaatgcttc aatcgcacca agtgccatat cgtcattcgc tgaaataatc acttctggtt
     4201 tctcttttaa ggttggtaac acactttcaa taatgcgtaa tccctcagaa cggagccagt
     4261 taccggtttg atcaaccacg attttatatt tgtcaccacc ggcagctaat tcatcacgaa
     4321 tacctttggt acgttcaatg ttagaggttg aacccggctg gccggttaaa agaataattt
     4381 ttgccccatt cgggtatttg gctttcactg cttttgcgac ttcttgaccg cctgtgtagt
     4441 tatttgcccc aaagtgtgga accggcttac tgctttcaac ttttcggtct aatgtcgcag
     4501 caggaatttt ttctttgata atttcttcca ctgcacctga aatcgcattc acatcattcg
     4561 gggaaatgat aatgccttta gcaccacggg taattgcatt ttctaagtca gaagcctgct
     4621 tagtagaaga actttgcccg tctaatactt gcaatttgat ctccaacttt ttactggttt
     4681 ctaccgctac tttttgtagt tgaacttcaa acgggctgga taggttcggt aagctaaata
     4741 ccacaagctc atctttcgca aagctgttca ttgctaagcc taacgttaaa gcactcaata
     4801 caaatttaat acgctttttc attacaaaat cctcttttta agatgggaat tgacggcgaa
     4861 tattgccaat gttact
//
LOCUS       DANLXB010000179         4857 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLXB010000179 DANLXB010000000
VERSION     DANLXB010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4857
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(345..2015)
                     /gene="glnS"
                     /locus_tag="PXD41_002180"
     CDS             complement(345..2015)
                     /gene="glnS"
                     /locus_tag="PXD41_002180"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL6289674.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2176..2619)
                     /locus_tag="PXD41_002181"
     CDS             complement(2176..2619)
                     /locus_tag="PXD41_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6289675.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2670..3245)
                     /locus_tag="PXD41_002182"
     CDS             complement(2670..3245)
                     /locus_tag="PXD41_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL6289676.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3352..4242
                     /locus_tag="PXD41_002183"
     CDS             3352..4242
                     /locus_tag="PXD41_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6289677.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4309..4830)
                     /gene="efp"
                     /locus_tag="PXD41_002184"
     CDS             complement(4309..4830)
                     /gene="efp"
                     /locus_tag="PXD41_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL6289678.1"
                     /translation="MQDGEPCVIVENEFVKPGKGQAFTRTKIRKLISGKVLEINFKSG
                     TSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGDNVKWLVDNAECIVTL
                     WNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGAVVNVPLFVQIGEVIR
                     VDTRSGEYVSRVK"
BASE COUNT         1329 a         1066 c         1023 g         1439 t
ORIGIN      
        1 atcataaaag agcatcactt ttggtttcca aagattatag aaagctcaaa taatacacta
       61 cctcataatt taaaatgaaa cgtttcaatt ggaaaaagtg gattttgtga ctgagatcac
      121 aaatttaaac attggtctgt atttttgaga gattttgttt gaaactgccg gcaaattcgc
      181 ttaaccttaa ggtaacaaga ataagtgttg tacctagcaa cctaacacat aaatttgctt
      241 tccgagtggc cccaagaatt ggggcttttt ttatgcttga tgagtcgttt tgagagtaaa
      301 aaaataccag catatttgct ggtatttgaa tgaagagagt tagattagaa cgctacgctt
      361 tcttttaagc tgacagttaa gttaaataca aggttgtctg ccgaaccatc tttgctgtct
      421 aagcagtagt aaccttcacg ctcgaattgg tagtcttgtt ccggtttggc gtgagctaaa
      481 cttgactcaa caaaaccatg cttaaccact aatgattcag gatttagcac cgcattgatg
      541 tcttcttccg cccccgggtt tggtactgta aataggcggt cgtaaatgcg gaactctgcc
      601 ggtttgttat cttcagcaga tacccaatga atcacgcctt ttactttgcg accatcagcc
      661 ggatttttgc ccaatgtatc cgggtcgtat gtgcaaaaaa tagttgaaat tcgaccgctt
      721 gcatcttttt ccacacgctc agctttaatc acataggcat tgcgtaaacg aacttctttg
      781 cctaagacta aacgtttata ttgcttattg gcttcttcac ggaagtcggc ttcatcaata
      841 taaatctcac gggtgaacgg taaatcacgc tcgccaagct ctggacgatt tgggtgatta
      901 ggggctttta atatttcctt ttcaccgaag ttttcaatca ccactcgaac cgggttaatc
      961 accgccatcg cgcgtggtgc gttttcattt aagtcttcac gaatgcacgc ttcaagggca
     1021 gagtattcca ccacgttatc ttgcttggtt accccaatac ggcgacaaaa ttcacgtaaa
     1081 gacgctgggg tataaccacg gcggcgtaag ccggaaatgg ttggcatacg agggtcattc
     1141 caaccatcaa caatgccgtc tgtgactaat tttaataatt tacgcttaga ggttaaagta
     1201 ccttctaaat ttaaacgtga aaattcgtat tggtgcggta acggtctttc aatcgaaata
     1261 ttgtccagca cccaatcata taagcggcgg ttatcttgga actctagcgt acatagcgag
     1321 tgagtgattc gctcaatcgc atcggaaatg cagtgggtaa aatcgtacat cgggtagatg
     1381 caccatttat caccggtttg atgatggtga gcaaatttca cacggtaaag caccggatct
     1441 cgcatcacaa taaacgggga cgccatatca atttttgctc tcaagcaggc tttcccttcc
     1501 gcaaactctc cgtttttcat tttttcgaat aacgctaagt tttcttccac gctacgatca
     1561 cggtaagggc tgtttttgcc cggctcggtt aaagtaccac ggtattcacg catttcatca
     1621 ggcgataatt catcaacata ggctaatcct ttgttgatta actcaatcgc atagccataa
     1681 agctggtcaa aatagtctga ggcataacga ggctcaccct cccatttaaa acctagccac
     1741 tccacatctt gcttaattga atctacatat tccacgtctt ctttaaccgg gttggtatca
     1801 tcaaaacgca agttacataa accgttataa tcttgagcga taccaaaatt taaacagata
     1861 gatttagcgt gtccgatatg caaataaccg tttggttcag gtggaaaacg agtgtaaaca
     1921 ttgttgtgct ttccgcttgc taaatcttca tcaataatat gggtaataaa attggctcga
     1981 gtgccagttt ctgccgttaa aatttcttcg ctcatagttc tctctaaatg tatcaataaa
     2041 aataacggat tattctacac ttaattgaaa cagacttaaa gactaaagca aaattcctcg
     2101 gtttcctcca aagaattttg ctgttttagt aagatgcaat ggaattgcaa atttttagct
     2161 aaatttaacc gcttgttatt gcctgatttc acggctttcg ctgatcataa aattcgcaat
     2221 ccgtttggca atccgccatt taccctcttg tttaacatag gtatcggcat aacgcacgct
     2281 gtgatcgtgc aagatctctt tgccctcttt ggtttctacc agtttcaccg cacaatagtt
     2341 gatcgctgtg gcgttatttt catcaataaa aggcacggta tgctgaccgt ttaaatgata
     2401 aacgctgtga aacggggtta aaaaggtggt aaacacctgt tcgatttctg ccacgccgtg
     2461 catttcaaac accaattttc cgccgatgta ggtgtttacg acggcatctt gcgtgaaaag
     2521 cggcatctgc tcggcaacct ttttttcatc ggcaaggtta gagaatgtat ctactaaatc
     2581 ttttagtgct aaacgatctt ggatttgttg taagttcatt gtgttttcct tctgattttt
     2641 gcaaattttc tttggttttt caccgcttgt taggctgcaa taccaacact ttcacggatt
     2701 tcgctgtttt cacgcaaaat gcgagccaca aaatcggcaa tggatttgcg ggaaacgctg
     2761 tgtcctttga acggttcgcc tttgtgagtc agctgatatt gcacttccga accgttggta
     2821 aaccagcccg ggcggacaac ggtataatcc aactcgctgg cttcaatcac ggctgccgat
     2881 tggcggtaag gctctaaaat tgccccgtga tcttcgccgg tttcgccata aatccccatt
     2941 gagctaatcc aaaccaagcg ttttacctga gcttcattca ttgcgttcac cacatttccc
     3001 gccatcgctt ttaagtcgcc ggcaagtcca gcgtaaacgg catcaacgcc ttgcattgct
     3061 tgggttaatg cgtggaaatc caacacatcg ccttgcacaa ttttgacgcg ttcagtttca
     3121 aatttcgcta ctgattgcgg acgacgggca aaaagggtta attgcacatt attgtctttt
     3181 agcagttcag gaatcacgac attcgctagg ctaccgcttg ctcctaaaat taagatctgt
     3241 ttcattgctg ttctccattg aatgaagtca gtatagcggt gtagattgca tttgattagt
     3301 agggtaaaat cgcttgaagt aatgagaaaa attcattaat aaggtggtta aatgaaagaa
     3361 aacctcaacg atttaagagc ttttttgttg gtagcacaaa cgagcagttt taccaaagca
     3421 gcagcacaga tgggcgtgtc gcagtcggcg ttgtcgcaca gcattcgggg gattgaagaa
     3481 cggttgcaaa tcaagctgtt tcatcgcacc actcgtagca tttcaaccac cgaggcaggg
     3541 gagaggctgt atcaacggct gttaccgctg tttgatgaaa tcgaccaaga agtaaatggg
     3601 ctgagtgagt ttcgcaatgc gttaaaaggc gggctgagaa ttaacggtaa tgaacacgtt
     3661 ttccgtgatg tgctggcaga taaattcgct gagtttgtca aacgttaccc tgaagtagca
     3721 ttggagctag tggcggaaga tcgctttgta gatattgtcg ccgagcgttt tgatgccggt
     3781 attcggcttg gggcagatgt ggcgaaagat atgattgcac tacgcatttc gcccgatgtg
     3841 aaaatgaccg cagctgccag ccccaactat ttggcacagc acggcacgcc gaaaacgccc
     3901 tttgatttaa ccgaacatca ttgtctcaaa catcgtcttg cgacattggg cggcattctg
     3961 gcgtgggaat ttcgggatcc catcaccaag aaaatcgtta aatttcaacc gcagggcaat
     4021 cttactgcca ataacggctt cttgctgcaa cactatgcca aacaaggttt aggcattctt
     4081 tggagtccgc aagacagcat tcaaaccgag ctggataacg gcagcctcgt gccgatttta
     4141 accgactggg caatgcagta tgagggctat catctctatt accccaaccg tcgccaaaat
     4201 tcgcctttgc tgaaagcgtt aattgatgtg ctgagaggat aggtaaaaat gagcggtcgt
     4261 ttttagcaaa aaattgacca aaaaacgacc acttgtagag aagctaaatt atttcacacg
     4321 agaaacatat tcgcctgaac gggtatccac acggataact tcaccgattt gaacgaataa
     4381 aggcacgttt accacagcac cggtgcttaa tgttgccggt ttaccgcctg tacctgcagt
     4441 atcgcctttt aagcccgggt cggtttcgac gatttctaac tcaacgaagt ttggtggtgt
     4501 gactgcaatt gctgaaccgt tccataaagt cacgatacat tctgcattat caactaacca
     4561 ttttacgttg tcgcctaacg ctttttcatc taccgagatt tgttcaaagg tttcagggtg
     4621 cataaagtac cagaaatcac catcgctgta agagtagttg tagttagaat ctactacatc
     4681 tgctgcttca accgaagtgc ctgatttgaa gttgatctct aatactttgc cagagattaa
     4741 tttacggatt ttagtacggg taaatgcttg acctttaccc ggttttacga attcgttttc
     4801 aacaattaca caaggttcgc catcttgaat aaattttaaa ccttttttaa agtcgtt
//
LOCUS       DANLXB010000180         4855 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.182, whole genome shotgun sequence.
ACCESSION   DANLXB010000180 DANLXB010000000
VERSION     DANLXB010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            123..350
                     /locus_tag="PXD41_002185"
                     /pseudo
     CDS             123..350
                     /locus_tag="PXD41_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            375..770
                     /locus_tag="PXD41_002186"
     CDS             375..770
                     /locus_tag="PXD41_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289679.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            802..1443
                     /locus_tag="PXD41_002187"
     CDS             802..1443
                     /locus_tag="PXD41_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289680.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1526..1927
                     /locus_tag="PXD41_002188"
     CDS             1526..1927
                     /locus_tag="PXD41_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289681.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            1972..2202
                     /locus_tag="PXD41_002189"
     CDS             1972..2202
                     /locus_tag="PXD41_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL6289682.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            2270..2536
                     /locus_tag="PXD41_002190"
     CDS             2270..2536
                     /locus_tag="PXD41_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6289683.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            2540..2809
                     /locus_tag="PXD41_002191"
     CDS             2540..2809
                     /locus_tag="PXD41_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6289684.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            2884..3147
                     /locus_tag="PXD41_002192"
     CDS             2884..3147
                     /locus_tag="PXD41_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289685.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            3207..3917
                     /locus_tag="PXD41_002193"
     CDS             3207..3917
                     /locus_tag="PXD41_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL6289686.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            3895..4185
                     /locus_tag="PXD41_002194"
                     /pseudo
     CDS             3895..4185
                     /locus_tag="PXD41_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            4175..>4855
                     /locus_tag="PXD41_002195"
     CDS             4175..>4855
                     /locus_tag="PXD41_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6289687.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSV"
BASE COUNT         1657 a          900 c          964 g         1334 t
ORIGIN      
        1 gaacaagttc tacaagcggt tgtcaagtgt tcatttgttc aatgaacagt tcattgtgaa
       61 taacaaaacc gcttgaatta caagcggtct attttgttgc gtaaatttac tgttagcgtt
      121 gagccataac cgactacgac cgctggcccg aagatattga cggcgagggg gacggcttct
      181 cgcttgcctc caaacggacg accactttta tgtcagccgg aatgacttta gtggagagtt
      241 cgcctggtaa agatattgtc gatctcaaac atatcccgaa aagtagccac gaagccccac
      301 cgactaccgg tattttaagc ctctacaatc gaggcgaccg cagacgcttt agcgaaacag
      361 ttgataggta agctatgaaa atccataccc aaatccgaaa agaaatcctt tcattattag
      421 aggcaaaatt aacggacatc gagcattttt ataacgggca accgaatttc attgatattg
      481 acgaacagca acttgccatc tctgtttatc ttgatgagat taaccgtcag gagcttacct
      541 tatgcgatga acagtggaca gctcaactta acatcacgat ttatctaaaa tcagttgatg
      601 aggcagaaga tgaattagat gagtgggccg aaaaaatccg tgaagtggtt gaaacatatt
      661 ctgcgtttga acatttagag ggcatcagcc tttctcaata tcaatacgaa caagatcaaa
      721 atcaaagaac ttggcactca gccacattga tttttgatgt tgaatactaa caagcaaata
      781 atccttatag gagaatctac aatggcaaaa acaacaaaag tccaaggcac aaaatttaga
      841 attggcattg gacgtgaagc ccaaaaggca attacggcta tcactttagc tacagcaacg
      901 cttactattg ccacatcagg ctataaaaaa ggcgatgcaa tcgaaattac cggttgtggt
      961 cagttagacg gcatttatcc tgtattatct gtaacaggcg atcaagtcaa attgtgcgaa
     1021 gaagtaaact ggacgggtaa agatttaccg gctaattaca ccaaagccaa agcagcttta
     1081 gtacaatact cagaccaatt ctgtgcggta aaaaacattg aaaaatctga tgatacgtta
     1141 agtaccgaag atgttacaac ggtctgctcg gaaggtacag aaaccgaacc cggagaaatt
     1201 gaatttggct caattaaact gagctttttt cacaagccaa gtacggaaat gcaaactcgc
     1261 ttacgcaaat tgttttatga caaatccacc tttgcgtaca aattagaatt acctgataac
     1321 cacggcacaa cctatggcga aggtttcatt gaggcgggta acggctttag tggcgaagtt
     1381 aaaggcaaat atgaaggctc ggtatcaatt aaaccaagca aacgtgatta tttgctagtg
     1441 taattacaaa atattgctcc aaatcgaccg cttgtaatat tgcaagcggt cttttttatc
     1501 ctaaatttta caaaaggaat cgacaatgac actccgtgaa aaactcctcg ccaacaaacc
     1561 aaaattacaa tctatcgaaa tcaacggtga gacctactac ctgcgtgaag ccactgttgg
     1621 cgatatgaat aagcagattt ttgaaacccg aagctggctc attcaacaag ctgaacaaga
     1681 aaatgttgaa ttaccggcag aagatgatga aacctttgac gaagctctca accgttttgg
     1741 cgaaaaatac cgccttgctc aatcggttgc ctaccgttta tgtgacgaaa acggtgcatt
     1801 actgtttaac ccacttaaca ttgacgatct caatgcgatt gccgaattag acagtaaagt
     1861 gattatcgac tttaaccaag ccgtgtccgc cccaaaagac tcagcgagcg aagaaagttc
     1921 caaataaccc tttcgctcgc actgggtaaa acccttgaag aaatcgaaca aatgcctgaa
     1981 cgccactttg ccgaatatca gcttttttat caagagcaac cttttgggct ttggcgtgag
     2041 gactatcgtg ctgctcaact tgcccactta accgcaatga tcaaccgtga cccaaaaggc
     2101 aaagcccctg aactctcgga atttatgccg ttttttaatc gggctgatga agtagaagca
     2161 aatgaagatg atggcgttgc ggattatttg gcgaaaaggt aaatctcttg tatttcattg
     2221 taattctgtc tataattggt gtaatacata gaaatacagg agagataaaa tggcgactat
     2281 caatgatgct ttcagtttta gaacaaatac cgaaataaaa aataccgcat ttgatgtaat
     2341 taaaaactat ggaatgacac cctctcaggt gtttaatatg tttttaaccg agattgcaaa
     2401 aacgaaaact attccgttaa gtttgaatta tcaacccaat cttgaaacaa aattggcaat
     2461 gcaagaagca aaatcaggta aaaatgaagt ttatgcctca cttgaagcat ttcataaagc
     2521 aatgttagcg gagtaaataa tgctacaaat ttcgccgaca aacgcatata aaagagactt
     2581 taaaaagatt gcagccgaat tagtcggtag ttcggaatat gtggaagtaa tgtattgcct
     2641 aataaaccaa ttaccattgg cggaaaaata tagagatcac ccactacaag gtgaatggca
     2701 aggctttaga gattgccata ttaagcctga tttagtgttg atttacgctg ttgaagataa
     2761 tctgctccgc cttgttcgtt taggatcgca cgctgaatta tttggataat ttctgtaaaa
     2821 actaaccgct tgcgattttg tgctgtgggc ggtatagttg gaatattaac aaaggaggga
     2881 aaaatgaaaa atgtacttct atttatcgta cactttttct taatcgcaat gctctcaatt
     2941 atcccaatat taattattct tggagcaatc gaaagagatc cttactatac tgcgtggatt
     3001 ttccttagcg tatttttagg cattggagca ttgttatatt ttgcaaccat tgtttctaag
     3061 ttaattaaca agggaaaaac acaaacatta gaagaaaaac gatatgcaga atattggaat
     3121 aatgtaaaag tcaatattcc caaatagtct aactgataaa tgaccaaaag ctcgctttat
     3181 gcgggctttt ttattggaga aaaacaatga gtggcttagg aaaattaacc gttaccttag
     3241 agcttgaaaa tgcaaaattt cagtccgcaa tgacgaaatc tgattatgag gcacaaaaat
     3301 ttgccaagaa ctttatccaa aatatggata gagctagaaa tcacgccaaa gaatttgccg
     3361 atcgctcaac ccaatattta aaaaacattg agcaagcggc aaagaacctc aataaaaatt
     3421 ctgaattttc atttttatcg actattggtg gacattatca atcaatgtct agtggcatat
     3481 tgagtgcggc aaaagcctat actgatattc aaaataaaat gaaattagta agcggtagtt
     3541 cagcagaggc agctaaacga ttaactgatg tgtttgatat tgcgactaaa acaagccaaa
     3601 gtacagaggc tgtttcaggt gtctatcaaa catttgctca aaatgcccaa tctctcggac
     3661 tggctcaaaa agatgtagca gaattaacta aaacggtctc tcaagccgtt gctgcaagcg
     3721 gcgcaagcag ttctgcagca agtaatgccc taacccaatt tggtcaatca cttttaatgg
     3781 gcaaaatgaa agcccaagaa tttaactcgc tcattactca aaccccaacc attattcaag
     3841 caatggcaaa aggtttggga atgacaatgg cagaatttaa agcagcggta taccgggcaa
     3901 aatctttact tggataacat tcaagggcaa ggttttgaga gagtggatac accccaaatc
     3961 ggcgatgtga ttttaataca ggtcggttct gatgtgccga atcacgcagc gatttatatt
     4021 ggtgaacaaa tggtaatcca ccatagcccg aaccgattat ctaagcgtga tttatatgac
     4081 ggttattggt tacgccatac ccacagtatt tggcggcata aactggcgga tagattggat
     4141 tttgacggca tatttaatga tataggagaa caatatgaaa tttagtaaat atcaattatt
     4201 agttaataag atctgcttta tttgtggtaa aaaagattgt ccacaaatga aaaagagtaa
     4261 agactacaaa gactttttgg atgctttaga aaaaggggat gttgataaag cagataaaat
     4321 atacaatacg aagttttcac agttttctaa atcttttggt catgaaatgg aaaagaattt
     4381 agagaaaaat cgtatacctc ctatttatca gggagttcca tttgattctt ttgacttata
     4441 tcagcattat tcttatggta atggagaggc attaaatctt tcatccgttg gattaagtaa
     4501 taaaattcgt cctctagtga ataaagataa agcatttggt aaatccaatg gaagtataga
     4561 aagccgattt atttcgcaat ataaaaatga aggacgcaca tctttctcca atgcttatga
     4621 ttttacaaaa gaagcatcgg gtattgcaga tccgttatgg gcgttaggaa cagctaccat
     4681 tagtggagaa ttgaaagata tacaaatttt tcccggtggt attgctaggg gaaatatcca
     4741 ttatagtatc agggacagat tcactgaccc atttgataca ttcaatttta ctaaaggaga
     4801 atggaaccca aatggaacac cttatattat tcaagatagc tggataaaat cggta
//
LOCUS       DANLXB010000181         4839 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLXB010000181 DANLXB010000000
VERSION     DANLXB010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4839
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            2..460
                     /locus_tag="PXD41_002196"
     CDS             2..460
                     /locus_tag="PXD41_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL6289688.1"
                     /translation="MLLSVTVNAAPVELHQFDSPKQESDYRALIQELRCPQCQNNNIA
                     DSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPATIMLWLLPLI
                     LIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEEK"
     gene            457..1368
                     /gene="ccmI"
                     /locus_tag="PXD41_002197"
     CDS             457..1368
                     /gene="ccmI"
                     /locus_tag="PXD41_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL6289689.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1365..1970
                     /gene="mog"
                     /locus_tag="PXD41_002198"
     CDS             1365..1970
                     /gene="mog"
                     /locus_tag="PXD41_002198"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL6289690.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            1980..2318
                     /gene="glnB"
                     /locus_tag="PXD41_002199"
     CDS             1980..2318
                     /gene="glnB"
                     /locus_tag="PXD41_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL6289691.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2399..2878
                     /gene="lspA"
                     /locus_tag="PXD41_002200"
     CDS             2399..2878
                     /gene="lspA"
                     /locus_tag="PXD41_002200"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL6289692.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2889..3833
                     /gene="ispH"
                     /locus_tag="PXD41_002201"
                     /gene_synonym="lytB"
     CDS             2889..3833
                     /gene="ispH"
                     /locus_tag="PXD41_002201"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL6289693.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3833..4081
                     /locus_tag="PXD41_002202"
     CDS             3833..4081
                     /locus_tag="PXD41_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL6289694.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4288..>4839)
                     /locus_tag="PXD41_002203"
     CDS             complement(4288..>4839)
                     /locus_tag="PXD41_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6289695.1"
                     /translation="SNHSNHSNHSNQSANQYIFNSDWFTHNVPSLASIFEYVKPRRIL
                     EIGSFEGRSSVFFIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRFIHNVTLA
                     QQKFQNVVLYKHRGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDALLAHRLVR
                     KGGVISFDDYLWSPDETGKQRHY"
BASE COUNT         1517 a          972 c         1057 g         1293 t
ORIGIN      
        1 aatgcttcta agtgtaacag ttaatgctgc tccggtagaa ctgcaccaat tcgacagccc
       61 gaaacaagag tcggactatc gtgccttaat tcaagaactg cgttgcccgc agtgtcaaaa
      121 taataatatc gccgattcca atgcgactat tgccaccgat atgcgggcaa aaaccttaga
      181 attgctcaaa caaggcaaaa gcaaagacga agtggtggat tatatgattg aacgctacgg
      241 caatttcgtc acttacgacc cgcctctcac accggcaacc attatgttat ggctgttgcc
      301 gttaatttta attgccttag ggctgggggt ggtgttgcgt agaaagaaaa acaaaccaca
      361 agcggtcaat tttgagcaaa atactgcaaa accgaccact catctcgctc aagatgagca
      421 agaacgtctt aaccaaattc tcaataagga agaaaaatga atttctggct ggcaattatt
      481 ttcgttacac tgattgtatg tggcgtggcg ttttatccgt tacttaaaaa gaacaagcaa
      541 atcgataaca ccaagcgaga cagcttaaac aaagccttct attttgaccg cttaaaagaa
      601 gtggaaaacg aagcgaatga aggggtgatt gatgaccctg aacaaaccaa attagagcta
      661 caaaaaaact tgcttgatga tattccacac agcacacaaa gtgccacaag tgaaaaatta
      721 acgctcggca agtcgtggtt tgtggcattg attttatttg tcggcggtat cagctttgcg
      781 atttacagca atgtcggttc ttggttctcc aactcaatgt tagacaccac tcaccaaaaa
      841 ttagacagct tctatgagcg tttaaaaacc gaagagacca atccgctctc acaagaggaa
      901 atgaaccaat ttgcgatggc attacgggta gatttacaaa gtaatccgaa tgacgacaaa
      961 aaatggtata tgctcggtca aatcgggatg gcgttagatg atggtcagct tgcacacgat
     1021 gcctttagca aagcggctca actcaagccg gataacttag attacaaact cagccacgcc
     1081 caactgctgc tcttttccga agcacaggaa gacaaaaaac agggtgaaac cttgttaaaa
     1141 gagattatcc gccaagacca cacaaacttt aatgcgttaa gtttattggc gttccactcc
     1201 tttgaaaaag aagatttcaa aatggcggca atgacgtggg gaatgatgtt aaaactactg
     1261 cctgatgaag atcctagcaa agtaacggta gaacgcagtt ttaatatggc gttatccaat
     1321 ttaagtgagg cggaaaaaca agaattgcaa aaaggtgaga aaaaatgacc gcttgtaaac
     1381 cacttagcaa agagaagttg aaaatcggct tggtgtcggt ttcagaccga gcctcgcagg
     1441 gggtttattc agaccaaggc attcccgaat taagggcgtg gcttgaatct gccttaaccg
     1501 agccgtttga gctggaaacc cgcttaattc ccgatgagca agccattatt gagcaaacct
     1561 taatcgagtt agtcgatgct cacgcttgcc atttggtatt aaccaccggc ggcaccggcc
     1621 cggcaaaacg tgatgtcacc ccagatgcca cccttgctgt cgcccaccga gaaatgcccg
     1681 gctttggcga acagatgcga caagtgagcc ttcacttcgt gccaaccgcc attctctctc
     1741 gccaagtggg agtaattcgc cacgacagtc tgattttaaa tctgccgggg caaccgaaag
     1801 caattaaaga aacgctggaa ggtgtgaaag atgaacaggg caaagtattg gttaaaggta
     1861 tttttagtgc cgtgccatac tgtttacaac ttttaagcga aatttatgtc gaaacccacg
     1921 cagctatttg cgaaagtttc agacccaaat cggcaagacg agaaaattaa ggctaaaaaa
     1981 tgaaaaaaat agaagcaatt attaaacctt ttaaattaga cgatgtgcgt gaagccttaa
     2041 ccgatgtggg tgtcagcgga atgagtatta ccgaaatcaa agggtttggc agacaaaaag
     2101 gacataccga gctttatcgt ggggcggaat atgcgattga ttttctaccg aaagtgaaag
     2161 tcgaaatcgt gattcccgac gagttggaag aacagtgcat tgaagcaatt atggaaaccg
     2221 cccaaaccgg caaaatcggc gatggcaaga tttttgtgta tgatgtcggg cgggtgatcc
     2281 gcattcgtac cggcgaagaa aatgaagaag cgatttagtt ttgcaaaaaa tccggcaaaa
     2341 acgaccgctt gcagggggat ttccatctac tctttttaca ttaaattttg gatattaaat
     2401 gaaaacaggc ttaaaatttc tttgggtgag tttaattgta atcatcattg acctttggtc
     2461 aaaatacatt gtagtgcaac attttgaatt tggtgaaagc attaatattt tgccgatttt
     2521 taacttcact tacgcccgaa actacggggc tgcctttagt ttccttgccg accattccgg
     2581 ctggcaaaaa tatttctttt tagggctggc ggtagtgatt tccagtgctt tagtggtggc
     2641 tctttggaag aatcaagcgg tcaaaaaatt agaaaatatt gcgtatgcct taattattgg
     2701 tggagcgatt gggaatgcca ttgaccgtgc ttacaacggc tatgtagttg atttccttca
     2761 tttttattgg gatatttatc actaccctgt gtttaatatt gccgatattg cgatttgtgt
     2821 gggtgcaggc ttactgattt tagaagcctt tataaccaaa aaagaaccga aaaaataaga
     2881 gtgattaaat gaaaatttta ttagcaaacc cacgcggttt ttgtgccggc gtggatcgag
     2941 ccatttcgat tgttgaatta gccttagaaa ttcacggtgc acctatctat gttcgccacg
     3001 aagtggtaca taacaaattt gtggtggatg gcttgaaagc caaaggggct atttttgttg
     3061 aggagctaca cgaagtgccg gacgatgcta tcgtgatctt ctcagcccac ggggtgtcgc
     3121 aagtagttcg ccaagaagcc aaaaatcgtg gcttaaaagt gtttgatgcc acttgcccac
     3181 tcgtgaccaa agtgcatatg caggttgccc gagccagtaa aaaagggaca aaagcaattt
     3241 taatcggtca cgaaggtcac cctgaagtta tcggcacaat gggacaatac aataaccaag
     3301 aaggtggcat ttatttggta gaatcggtgg aagatattgc caacttgccg gtttccaaca
     3361 acgatgaatt aacttttatg acgcaaacca cactttccat tgacgatacc attggcgtga
     3421 ttgaggcgtt aaaagagaaa tatccggcaa ttcaaggccc tcgcaaaaat gatatttgtt
     3481 atgctaccac caatcgccaa cacgcagtgc gggaactggc agaacaatca caattagtgt
     3541 tagtggtagg ttcaaaaaac tcctcgaact caaatcgttt ggcggaactc gcctctcgaa
     3601 tgggtgtgat gtcaaaactg attgatggtc cgcaagatat tgatccaact tggttggagg
     3661 gtattgaaac tatcggtatt accgccggtg cttccgctcc tgaagtgttg gtgcaatcag
     3721 taatttcgca tttaaaaacc cttggcgtaa ccgaagttga aaccttagtc ggcaacgaag
     3781 aagacgtggt gtttgaagtc ccgaaagagt tacgcatcaa agaggtaaaa taatgacaga
     3841 aatcaaccgc tttaaattag aatgggcgtg ccgacgtggt atgcgtgagt tagacaaaat
     3901 gattatgccg ttttaccaaa atcattttaa tgaactcaat gaaacccaac agcaagcttt
     3961 cgttgaaatg ctcaattaca gcgacccgga actgtttcgc tgggtaatgc tgcaagcacc
     4021 tgccccaacc gaagaaatcg ctgaattgat taggttaatg cgagataaaa ttgagaccta
     4081 gagctaatag attaacctct tctttggggt aaatatatag ctacttaccc caaagaagac
     4141 taaattcatt caacttttac aaaataaccc taaactagaa aagttaatct tccaatttaa
     4201 taatatgttg ctgataagct attaaacctt gtattacatg cactttctgc tgataggtat
     4261 tgacatagtg atcaacagcg ggttttacta ataatgacgc tgtttacctg tctcatctgg
     4321 tgaccaaagg taatcatcaa aactaataac gcctcctttt ctcactaaac gatgtgcaag
     4381 taaagcatcg aacaacacat ctggcgcttc gtgagatcca tctatgtaaa tatagtcaaa
     4441 ataatttata tatccatttg cgagaagttc aatcattttt tggtgagaat agccacggtg
     4501 cttatataac acaacatttt ggaatttctg ttgcgcaaga gtgacattat ggataaatcg
     4561 ttgttctatt tctcccatgt cccaaactcc ttgatgctct gctccccctt cccaactatc
     4621 aatacaatga atttcaactt gtgattgata tttcaatgct tcttcaatga aaaagacaga
     4681 tgatctacct tcaaatgatc caatttctaa aatcctccga ggttttacat attcaaaaat
     4741 agaagctaat gaaggaacat tatgagtaaa ccaatcagag ttaaaaatat attggttggc
     4801 tgactggttg gaatggttgg aatggttgga atggttgga
//
LOCUS       DANLXB010000182         4717 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLXB010000182 DANLXB010000000
VERSION     DANLXB010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4717
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            74..2221
                     /locus_tag="PXD41_002204"
     CDS             74..2221
                     /locus_tag="PXD41_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6289696.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2234..3352
                     /locus_tag="PXD41_002205"
     CDS             2234..3352
                     /locus_tag="PXD41_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6289697.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3413..4675)
                     /gene="rho"
                     /locus_tag="PXD41_002206"
     CDS             complement(3413..4675)
                     /gene="rho"
                     /locus_tag="PXD41_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL6289698.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
BASE COUNT         1414 a          881 c         1063 g         1359 t
ORIGIN      
        1 tccttaatca actttgttgg ttagatgtaa aaagttataa atacttcttc acccaatata
       61 aggagaaatc ataatgaaac gcttgcgtta ttcttatctt gctttgatat taggttcagc
      121 cttaccttta tcggcttatg ctgacggtta tttaagtaac gataatattc ggcaatttga
      181 tgcccgtttt aattttttcc tcgcaaatcc actacctgcg cctattgcaa aagcagatgg
      241 gcgtggtgaa gcgattgaga atttggtggt gaaatatgca tcagattatc ttaatgatat
      301 ctatcttaaa gaggatgtta ttcgttttcg ccgttggcag tggcaagatc tctatacgtc
      361 attggattta aaaacgaaac aaaagcccga ttatttaaat acttaccgat tacaggcgga
      421 agcgtacttt atcaataagc aataccaaga agcattatct caactggatc aaattctgcg
      481 gcgtaaccct aatgatgttc atgcaatggc aatgagtgtg gttgcaagtc gggtattgga
      541 aaatcctaat actgaagccg agcgtttatt agcgctttat caaatctctc caagtattgc
      601 gcaaaaggtg cagcaatatc tacattttac agacactatg cttgctgcca gctatggtag
      661 tgagcctcaa acaacaatga tccccgacac catagcggta tttgggcaat cgcctaaccc
      721 agacggtact ccaagcaagg gattattgca acgtcttgag aaaaccaaag aaatggcaga
      781 gaaatttccg aatgcaaaaa ttattttaag tggtggacct gttcgttata tctatgcaga
      841 agcggatgta atgaaaaaat ggttgataga gaatggcgtt gatgaaagca gactgttgct
      901 tgatgatgtg gcacgagata ctccgggaaa tgctgtcggt atcattgatt ttatgaagga
      961 atatggaggt agaaaagtat tggggatcgg tacgatctta catttaccga gagcaatgtc
     1021 tgtattgaaa agctatgcgg attccattgg atatgaattg gaaattgatt ctgccggagg
     1081 cggttctcct cctaatgaaa aaaataaaaa aggtgaagct ctttatacat ttgttaatgt
     1141 tgctcgtgca atggggttat ttaccttggg cgattttgag aatttgcttg ccaaagaaca
     1201 agctgaaaaa gaacaaagag aagcgttgga aaaagcacag cagaattatt tagaaaaatt
     1261 ggtagctgag cgagatcaag cagtaaaaaa tgcagaaaat tctgcaaatg agctggaagt
     1321 agccagacag gcgttagaaa cagcaaaaca ggctcatcag caagctgaag aggaattgaa
     1381 taaagaactt agtaaaacgc aagagcagtt aaaacagagt acggaagccc ttagtcgttt
     1441 aataataaag cagaacaatc ctttttccga gcattatgtt gtacagctta atttgatgga
     1501 acaagcaact tatgatctgt accgtaggtt agcagaaata gaacatacac aagattggaa
     1561 tttatggctt tcggatagtc tatccaaata tcgtttaaaa aatcgttcaa ccgaagacta
     1621 tcacttatta catatcgggc tagatcatca ggtttcccat aattggtcta ttggtggagt
     1681 atttggtatc agtcaggggc aaattgagaa taggacgcat aaagtgaaag ggacatctgc
     1741 tggtatttat gctggttatc gtcctacaag tggtctgttt tggacaaatt tttttaatta
     1801 cagtcatttt actaatcaat ctggtgtaac aaaacgagat aataatgcat acagtctgag
     1861 tagtgaaatt ggaagaaata tcgtgatgag tcatcaatgg caaattacgc caaagctgca
     1921 attaggctgg gcaaaagctg gatcagcacg aatgttttgg gctgggacag ggctacgttt
     1981 aggaaaagtg attgaactca atgcaatcaa acttaaacct tatgctgata ttagctatcg
     2041 ttttcgaaat cgtcatattg ataccttaga tagtttatct gatcgtcatc ggaatgtaat
     2101 cagtattggg atacaagcag ttggaaatcg ccattatttt gcaatcgaag gatcaatgtt
     2161 acacggggat gcattgaagc gttcatacgg attacacgca aattatcact atcaatggta
     2221 aataggagcc tctatgaaaa aaatcaaaac aaccctttct gcccttgctt taagcctttc
     2281 tttgataagt gtaaatagct gggcgatacc agctgattat ttgagccaag acaatatcag
     2341 tcaatatgat aaggcgttta actttgtatt agcaaaagta ctgcctgcac caaaaggtaa
     2401 agaagatggt cgaggagcgc cgattgagca tttagttatt caatatgcgc cagactatgt
     2461 tgatgaccct tatctaaaag aggatgtgct gaatttccgc cgttggtatt ggcaagcgat
     2521 gtatgcttcg cttgatcaga aagttaaaga gaagccgacc taccttaaca cttaccgttt
     2581 acaagcagag gcgtatttcg tcaataaaga gtatcgggaa gcactttctc agctcgacca
     2641 aattttgcgc caaaaccccc gtgatattca cgctcttgcg atgacagtat tagcttcaag
     2701 ggtgctagaa gatactgaac aagaaacggc tcgtctttct gcactgaaac agcttgctcc
     2761 cgaagtcgca caacgaatga cagacttttt tgcctttacc gaacaaacgc tggcggcaag
     2821 ctacggtaat gaaccacaga cagcaatgat ccctgatacg attgccgttt ttggttctac
     2881 gccaaacaaa gacggcacac cttcgccgct gttgttagat cgattacaga aaaccaaaga
     2941 gatggcacaa aaatttccgc aagcaaaaat tatcgtcagt ggcggtgctg tgaaaacgga
     3001 atttgctgag gctgatgtga tggcaaaatg gcttagcgaa aatggtattg aaaaagaccg
     3061 tttgctactt gatcctgttg ccagagatac cccgggaaat gcggttggga ttatcaagct
     3121 gatgcaaact tataatggca agaaagtatt aggtatcggt acgttacaac atatccctcg
     3181 tgcaacagcg gttctcaaag gttatgcaca gcacattggt tatccgattg agatggattc
     3241 cgttggtggt ggcaagccgg caacaccggg aaaagccaaa atcgaggcac tttatactta
     3301 tgtaaatgtg gcgagatcaa tggggttgtt tgagttgggg gattttaagt agttacttta
     3361 ttgacagctg ctattgataa aaatcccgcg ttaagcggga tttttttatg ttctacgaac
     3421 gtttcataat ctcgaaaaac tcttcgttag tttttgccat cattaatttg tcgattagcc
     3481 attcgatagc atctacttcg tccattgggt tgaggacttt gcgtaacatc caagtttttt
     3541 ggagttcgtc tgctgccatt aagaggtcat ctttacgagt acctgagcgg ttgaagtcaa
     3601 tagccgggaa gatacggcgt tcagcaatac ggcgtgagag gtgtaattcc atattacccg
     3661 tacctttgaa ctcctcgaaa atcacttcgt ccatttttga tccggtatcc acaagtgcgg
     3721 ttgcgataat ggttaagctg ccaccttctt ccacattacg ggctgcaccg aagaaacgtt
     3781 ttggacgatg taaggcgtta gcgtccacac caccggaaag gattttgccg gaaaccgggg
     3841 taacggtgtt gtaggcacgg gctaaacgag tgatggagtc taataaaatc accacatctt
     3901 ttttatgctc taccgagcgt tttgctttct cgattaccat ctccgcaact tgaacgtggc
     3961 gggttgccgg ttcatcaaag gttgaggcaa ttacttcacc acgtacggtg cgttgcatct
     4021 ctgttacttc ttccggacgc tcatcaatta ataatacgat aagctcacat tcaggatgat
     4081 tatgggtgat gctttgtgca atattttgca gtaacacggt tttaccagct tttggcgggg
     4141 caacaattaa cgctcgctga cctttaccga ttggggcggc taaatctaaa atacgagcgg
     4201 ttaaatcttc ttttgatcca ttgccacgct ccatttttaa gcgagaattg gcgtgcagag
     4261 gggttaagtt ttcaaagaga attttactgc gagaggcttc cggtttgtca tcattaactg
     4321 aatcaacttt cagtagggca aaatagcgtt ctccctcttt tggtgggcga attttacctt
     4381 ctattttatc gccagtttgt aagttaaaac ggcggatttg gcttggagaa acataaatat
     4441 catcagggcc ggctaaatat gagctatctg atgagcggag gaaaccgaag ccgtccggta
     4501 gaatttcaag cacgccttgc ccgaaaatgt cttcaccgct ttttgcgtgt tgtttaagaa
     4561 tagcaaatac gatgtcttgt ttacgtaaac gagccagatt ttctaagccc atttgatttt
     4621 cacccatttc cacaagcttt gaaacagggg tgtttttaag ttgagtaaga tgcataattt
     4681 gaatgtaaaa ttgtgattaa ttaagattgg atttgtt
//
LOCUS       DANLXB010000183         4592 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLXB010000183 DANLXB010000000
VERSION     DANLXB010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4592
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            55..189
                     /locus_tag="PXD41_002207"
     CDS             55..189
                     /locus_tag="PXD41_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL6289699.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            193..1356
                     /gene="torC"
                     /locus_tag="PXD41_002208"
     CDS             193..1356
                     /gene="torC"
                     /locus_tag="PXD41_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL6289700.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1456..3921
                     /gene="torA"
                     /locus_tag="PXD41_002209"
     CDS             1456..3921
                     /gene="torA"
                     /locus_tag="PXD41_002209"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6289701.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3921..4511
                     /gene="torD"
                     /locus_tag="PXD41_002210"
     CDS             3921..4511
                     /gene="torD"
                     /locus_tag="PXD41_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL6289702.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
BASE COUNT         1322 a         1049 c         1141 g         1080 t
ORIGIN      
        1 tgtttctgaa gataaaataa ttaacactta ttagttaata aaaaaggagt tgaaatgcgt
       61 tcagaactat taaaaacgct tttgctatca gggctgattt taccgctatt gatggcgttt
      121 gccgtaggag cttacggctt tattgtgtgg atgttacaac tgtttgttat tggtttaccg
      181 ggagcgtaga aaatgttagg ttcaatcaaa gcattattta ctcggcctgc aaccaaaatc
      241 gggttgggag tgttagttgg tatcggtttt attgccggag caattagctg gcatcaattt
      301 aataaagcga tggatcatac cagcactgaa gagttttgcg tgagttgcca ctcaatgcag
      361 cagccgttag aggagcttaa aaaaaccgcc cactggtcga ataaaagcgg ggtaacggca
      421 acctgttcaa gctgccactt accgcacgat tataccgaaa aatatgcccg caaagtgcag
      481 gcaagccgtg aggcgtgggc agaattatcc ggcaaatata aagaagaagg ctcatttgaa
      541 aaacaccgct tagaaatggc agagcgtgag tgggcaagat ttgccgccaa tggttcaaaa
      601 gagtgtaagg cttgccacag ctatgagcga atgaattttg ataaaatggg cgaagcagct
      661 cgtaaggcaa tgaaaccggc tgcggagaaa gatcaaagtt gtatggattg ccacaaaggc
      721 attgctcacc acttaccgaa agccgatgaa aatgcactga aatcgaagtt tgatcagttt
      781 gtgaataaat ccccaaacca aggcaaatct tactacacca aagggaatgc cgaattattt
      841 ctagacgaag gtttaagcca agctatcggg caattagaaa ccgccgtgcc ggtggcattt
      901 gtgcaagcgg gcaaaaatgc ggatttggtt gagctgacaa tgtggcgtaa agagaaaggt
      961 ttcggtcgca tttggtatca cgatttcggg aaaaacatta ccgatgcggt tctaaccaaa
     1021 gagtttatgg caaatcagcc gaaatttgag gtgttggaaa ccaaagaaga tccgattacc
     1081 ggcttgaatt ggcaaaaagt gaaactacaa gcgtggattg gcaaagctca attattagac
     1141 gatgttaccc caatctgggc gaatgcagaa aaccaataca aaacccaatg tagcacttgc
     1201 cacagacagc ctgatgtcgc ccacttcgat tccaacagct ggatcggctt attcaacgga
     1261 atggtcggct ttaccaatat ggataaacag accggcaaag aggtgctacg ttatttacaa
     1321 atgcacgcct ccgatagtga agaagcgaag cattaataat attactcccc tctttactaa
     1381 agaggggaat taatcgagcg ttgaataaca ttctctgtac tagctcacgt ttttacaaat
     1441 aaagaaggac aagatatgca acaatctcgc cgtcaatttt taaaaaatat gtctgtgatg
     1501 gctgccgctg tcacaatgcc gaatttcctc gtgcctcgca atgtgtttgc gagtgaagac
     1561 ctcagtcaat ggaaagtttc cggctctcac tggggggcaa tgcgtgccaa aattgagaac
     1621 ggacgagtgg cagaaatcaa accgttcgag tttgataaac acccgaccga aatgctcaac
     1681 ggcattaaag gcttaattta cagcgattcc cgtatccgct acccgatggt gcgtttagat
     1741 tggctcaaaa accgccataa cagcaacacc gcacagcgtg gcgataaccg ctttgtgcgg
     1801 gtaacgtggg acgaagccct cgacctgttc taccaagagt tagaacgggt acaaaaagag
     1861 tacggcccgt gggcgttaca caccgccaat gtgggctggc gttcaaccgg tcaattccac
     1921 agttgcggta accatatgat ccgagcgatt gcgatgcacg gtaacagtgt cggcacggca
     1981 ggcgactatt ctaccggtgc agggcagacc attctgccgt atgtgctggg ttcaaccgaa
     2041 gtctattcgc agggcacgtc ttgggaaatc atcttaaaag agagcgaaaa catcattttc
     2101 tgggcaagcg acccggtgaa gaacctgcaa gtgggttgga actgcgaaac ccacgaagcc
     2161 tatgcctact tggaaaaact gaaagagaaa gtggcagcaa aaggcgtgaa tgtgatctgt
     2221 gttgatccgg tgaaaagcaa aacccagaat ttcttaggtt gcgaacagca gtacatcaat
     2281 ccacaaaccg atgtgccgtt tatgttggca cttgcccaca cgctctacac cgagaacctg
     2341 tacgacaaaa aattcttgga tatgtacacg gtcggctttg aaaaattcct gccgtatctg
     2401 ttaggcgaaa ccgaagacaa agtggcgaaa accccggaat gggcggctga aatttgtggt
     2461 atttccgccg acaaaatccg tgaatttgcc cgaatgcttg ccggcaaacg cacccaattt
     2521 attttcggct gggcaattca acgccaacaa cacggcgaac aaccgtactg gatgggagcg
     2581 gtgctagcct caatgttagg gcaaatcggc ttggaaggcg gcggcatcag ctatgctcac
     2641 cattacagct ctatcggtat tcctgaatcc ggtgcggcaa tgccgggggc gttcccgctc
     2701 aatattgatg aggggcaaac cccgaaatac gacaacaaag attacaaagg ctacagcgac
     2761 accattccgg tggctcgtat gaccgacagc ttgctccacg ccggcgaaac cattgattac
     2821 aacggcaaaa aagtgactta cgctccgttc aaaatggcga ttttcaccgg ctgtaaccaa
     2881 tggcaccgcc attccgagcg gaacaaaatg aaacaggcgt tccaaaaact ggaaaccatt
     2941 gtttcgatca actacagttg gacggcaacc tgccgcttct ccgacatcgt gctgccggcc
     3001 tgtaccccat ttgaacgcaa cgatattgac gcctacggct catacagcaa ccgtggcgtg
     3061 attgcaatgc acaagctggt tgatccactc tacgactctc gctccgactt tgagattttc
     3121 cgagatctct gccgccgttt cggtaaagag aaagagtaca gccgtggaat ggacgaaatg
     3181 cagtgggtag aaaaactcta caaagattgt cgccgtgaaa acagaggtaa atttgaaatg
     3241 ccggagtttg ctgaattttg gcaaaaaggc tatgtgctgt tcccagaggg caaaccttgg
     3301 gttcgccacg ccgatttccg tgaagatccg gaattgcacg cacttggcac accgtccggc
     3361 tttatcgaaa tttacagcaa caaaatcgcc tctttcggct atgacgattg caaaggtcac
     3421 ccaatgtggt ttgagaaagc cgaacgttca cacggcggta aaaattccga caaattcccg
     3481 tactggttgc aatcagttca cccggacaaa cgcttacact ctcaactttg tgaatcgaaa
     3541 gaactgcgtg aaacttacag cgtgcaaggg cgtgaaccgc tttacattaa cccacaagat
     3601 gccgccaaac acggcattca agacggagat ttagtgcgag tgtttaacga ccgtgggcaa
     3661 gcgattgtgg gggcggtgct ttccgacaac ttcccgaccg gcgtagtgcg tttacaagaa
     3721 ggggcttggt attcacccct tgacgaaagc gtgggggcga ttgacaccta tggcgacccg
     3781 aacacaatga ccctcgacat cggcacgtcc aagttggcac aagcggtttc cgccaacact
     3841 tgcttggtga acatcgagaa atttatcggc aatgccccgg ctccgaatgg ctttaacggt
     3901 gcgattgagg taacggctta atgacgttgg caatcagtcg tgaagaacgg caatttatct
     3961 atggctggtt taacgcaatg ctcgcccgag aactttcgga cgagcagtta aatgccttac
     4021 aagcgggcga atttgacgat ttttttgcat acctcagcga attgggtttt gccgaacagg
     4081 ttgcaaaatt tcaagcagaa gtgaccgctt gtaggcagct ggaatttcct cgtctagaac
     4141 tggcggctga ctttgcccaa ctgtttttat tggaaggcaa tctcagtgcc attccttacg
     4201 cctccgccta tttaagcggc gaagcgttag cgaaaaattt ggcggaaatg gacagactgc
     4261 tgggcgaatt tgggctgcaa gttaatcgag aaaccaaaga gccgagcgat cacctttgcg
     4321 tttatctcac cctttttgac cgcttgcttg ctgaaaaacc gttggaaacg caacagcaat
     4381 ttctgcaaaa ccaactgatg agctggctcc ctgcgtggtt cgccaaagcc aaaaccgtca
     4441 aaactaacac cggcgtttat ccggcgttgc taaggttgtt tgaacaggtg ttgctgaagg
     4501 aacaaagata aagttattta tttgagaatg atttgtattg agcgaattga gaaaggaagt
     4561 taaaatttca acttcctttt ttattggctg ga
//
LOCUS       DANLXB010000184         4521 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLXB010000184 DANLXB010000000
VERSION     DANLXB010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4521
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            119..550
                     /locus_tag="PXD41_002211"
     CDS             119..550
                     /locus_tag="PXD41_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6289703.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            537..1004
                     /locus_tag="PXD41_002212"
     CDS             537..1004
                     /locus_tag="PXD41_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6289704.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            1007..1774
                     /locus_tag="PXD41_002213"
     CDS             1007..1774
                     /locus_tag="PXD41_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6289705.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            1771..2577
                     /locus_tag="PXD41_002214"
     CDS             1771..2577
                     /locus_tag="PXD41_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL6289706.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            2577..3614
                     /locus_tag="PXD41_002215"
     CDS             2577..3614
                     /locus_tag="PXD41_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL6289707.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            3647..4521
                     /locus_tag="PXD41_002216"
                     /pseudo
     CDS             3647..4521
                     /locus_tag="PXD41_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251836.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine-type phosphatase"
BASE COUNT         1319 a          862 c         1043 g         1297 t
ORIGIN      
        1 taatctgttg tcactttata tttcttctta tgtgtacgat atatcgtgca ataacttccc
       61 ttgtttatct gtataacatt ttatttaata gaatgactta taaatcaagg agtgacttat
      121 gtctaatcaa attgcgttat tgttgatgag ccacggcagt tttgcgaggg cggcgttggc
      181 gagtgccgag ctgattgtcg ggcagcagga aaatgtggca gctatcggcg tagtagcagt
      241 ggataatgta gcggacatta aacggcagat ggagcaaacc attgctgagt taaacaccga
      301 caaaggcttg attattctca ccgatattgt tggtggtacg ccgatgaatc ttgcctcttc
      361 tcaattaacc caccctaatg tttttgcctg ttcgggtttg aatttacctt tattgctaga
      421 agtgctgatg agccgtgacg gcaatttgca agaaattcgg gaaaatctac cgcttgcata
      481 ccaaaacgga tttagcctac gcacacaaca agattttgtt tcacaggagg acgatgatga
      541 tctgctttag ccgtattgat gaccgtttaa ttcacggtca agtagtcacc acttgggtta
      601 atttacaccg tattgaacaa attattgtgt taaatgatgc ggtggcagcg gatccaaccc
      661 aaaaacagat tttaacgatg gcagcaccgc agggaattaa agtggtcgcg tttggcattg
      721 aaaaatttgg tgaagtgttg cagaagacac aaattacccg ccgtactatg ttgttgttta
      781 ccaatagcat tgatgtgtta cgcactgtag aactaggtgt atcgattgac aaattgaatg
      841 tcggcggaat gcgttatcaa gctaggcgtg agcagttaag taaagcggtt tcagttacgc
      901 cagaagagcg tcaagcattt aaaaccttat tggaaaaggg tgttgaagta acggtacaga
      961 tggtaccgaa tgatgaaaaa cttaacttac aggagattat ctagctatgc tgactgcact
     1021 acttgttgcc tgctgggcag gtatttgtgc cttagatgat attggcacac agatgatccg
     1081 ccgtccgttg ttaatcgcac cggtggtcgg attgattatg ggggatttgg aaacggcgtt
     1141 gattattggt gctacgcttg aagtgatgtg gatggggatc ggcaatgttg gtgcatattc
     1201 tgcaccggat atgatttccg gaaccgctat tggcaccgca cttggtattg ctgctggtga
     1261 agcttctact gcggttgcac tcgcagtacc gacctcactc ttggcacagc agttactcat
     1321 tctttaccgc tccggcgtat gtgcattgaa cccaattgct gaacgctggg cggcaagcgg
     1381 tgattttgac aagattttcc gcattcacta tatcccaatg ttaattgcct tttctattcg
     1441 tgctattcca acgttcttag ccgtctatta cggggcggac attattgccc aagcggtctc
     1501 tgctctgccg gcaaaagtga ttaccggatt aaatgttgca ggcaaaatta ttcctgccat
     1561 cggtatcggt ttgctgatgt taatgatgat taagaaagcc gaactttgga cgttcttaat
     1621 tgctggcttt acgttggcgg tttatctcaa attatcagta ttgccgatta ccttaattgc
     1681 actaccgctt gcgttgattt acgacttagc agtaagcaaa aaagctgaag ctgcaccaac
     1741 caaaaccgca gatgaagagg attatgacct atgagcaata aaattaccaa acaagattta
     1801 aacaaagtgt tttggcggat gcaggtgctg aacgtcacaa acaacttcca atcgatgcag
     1861 gcgattggat ttttaagtag ctttattccg gtattaaaac gactttataa agatcgtcca
     1921 caggaagaac gagcggaagc aatgaaacgc cacttaaaat tttttaacag ccacgttaat
     1981 tctgatgcat tgattttagg aattgccgct gcggtagaag agactaccaa agaggatgaa
     2041 aaagagacag taaccgcgat taaaaccggt ttaatggggc cgttagcagg gctgggagac
     2101 agcttgttga aattcacctg gttaccgatt tgcggtagta tcggggcggc attggcacta
     2161 agtggcaatg tgttaggccc gattttaatg ttcttgttgt ataacagtgt aaacattgcg
     2221 acgaagtatt acggtatcca tctaggttac agcaaagggg ttgatttaat tcacggtgcg
     2281 ggtaataaca ttttgcaacg actcggcaat atggcaaatg tggttggttt aatggtgatt
     2341 ggcgcattaa ttgcctccgt tgtgaaagtc aaagtagttt cacaaattgc cgctggtgat
     2401 aatgtgatta aattccaaga gatgttagat aaagtgatgc cgggactact cagcttactt
     2461 ttaactgtcg tgatctactg gattttgaag aaaactaacg gcaaatatgc tgcaacgatg
     2521 atccttgcta cgatggggat ctgtatcggc ttagtctatg caggaatact cggctaatgg
     2581 acagtgtgta tgacattatt cggttggaac agggcagata cctgttccgc caacagccgg
     2641 ctcaatcggt acagattttc tttctggaca accctgacag taaggatagc aaatggctgg
     2701 cggagactga tttggcagag tttgagctga aattgagcgc ttgtgaagcc cgtccgttct
     2761 tcctcattca atcagcaaac ggagaacaga ttgttgctga acgcacctta cctgttgccg
     2821 gaatgaataa ttttcgggat atggggggct atgtcgctca tcagggcaag cgagtgaaat
     2881 ggggcaagtt ataccgctcc gatcatctgc ataatttaag agacgaaggc gtggcttatc
     2941 ttgataaatt gggaattcag actgttattg actatcgcag cccgaatgaa gtcgccaaat
     3001 acccaaatcc cccaattaat ggcagagagc aaacttttcg gcttgatccg aatgcacata
     3061 ctgccgagct tgctgcccaa tttagtgcag acaagcacga tgaagatcgt aatttggtca
     3121 ataaaatcat tgctcaaaaa gctgaaggta atcttatcaa tcgctacgac attgtaatgg
     3181 cacaatatcg taattttgtc gaaaaagcag aatgccaaac cgcctttgct gaaatgttaa
     3241 ggttggcgac agaccctgaa aatgcaccat tggttcaaca ctgccgtgga gggaaagatc
     3301 gcactggttt cggtgcaatg ttactgcttg gtattttagg cgtgagtaaa gctgatatta
     3361 ttgctgatta tatgcttact cattataacc gccttgctcg taacgaagag aaaatggcga
     3421 tttaccgtac cttcactcaa gatcaagatg tgttggacta cctattgtct ttaatcgata
     3481 ctcaacccga atttatcgaa caatcgctta atactattga aacccaatat ggtactattg
     3541 agcaatatgc ccaaagggta ttaggtatta ctgcgaagga aattgaagca ttacgggcaa
     3601 attatttggc gtagaacggt agggtgtaat attgaacaca ctacaaatgg agaaatttca
     3661 tatgcgttat tttgcaaaac attggtataa aactaccgct tgtctgacaa caattttcac
     3721 agcatttcct ctttttgctc aaccaattga aaatatacca acttcccact acgaattaga
     3781 aaaaatcatt atatttagcc gacacgggtt acgttcccct cttacagaaa aaggcagtga
     3841 tttagaaaaa tcaacccctt ataaatgggc aaattggagt gtaccgaccg gtcatttaac
     3901 ccataaaggg acgctgttgg aaacctattt tgggcagtat cttggtcaat ggctcacaca
     3961 taatgggtta ttggacaagg caagctgtga aagtgggaag cagattgagg tttatgctaa
     4021 tagcctgcaa cgtacaattg gcactgcaca agctttggtt gccggtgggt tttcaggttg
     4081 taatgtacaa gttaaacacc accagcagat tggaaagatg gatccggtgt ttaatccaat
     4141 tattcgctcc gatgaccaga catttgtgca aacagcatta agcaaaattg acctcaataa
     4201 aacccatcag tatttagcgc catcctatca tttattaagc gaaataatcg attatgctca
     4261 ttcagaaaaa tgtttgcagg aaaaacagtg tgaatttttt aatgatgttg gtaaattaag
     4321 gattaaaaag gataaataac caggtgtttc cggtacgatg cgattaagta aaaatattgt
     4381 cgatgcctta ttgctgcaat attatgaagg ttttccttta aaagagattg caaataacca
     4441 gcttgatagt gatcagaaat ggcaaacact caataaaatt aaaaacgatt accaatttat
     4501 gctacgagga gatccattta t
//
LOCUS       DANLXB010000185         4413 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLXB010000185 DANLXB010000000
VERSION     DANLXB010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4413
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            127..1161
                     /locus_tag="PXD41_002217"
     CDS             127..1161
                     /locus_tag="PXD41_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6289708.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            1229..3159
                     /locus_tag="PXD41_002218"
                     /pseudo
     CDS             1229..3159
                     /locus_tag="PXD41_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
     gene            3257..4306
                     /gene="fbpC"
                     /locus_tag="PXD41_002219"
     CDS             3257..4306
                     /gene="fbpC"
                     /locus_tag="PXD41_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL6289709.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         1180 a          962 c          982 g         1289 t
ORIGIN      
        1 gaattgcaaa ttttttcaca atttaggccg cttgttgatt gaactgtgag cttgctcaca
       61 gaattttatg gtatttcttg ctatattgta tagcaatcta tgcgataact cattaaggaa
      121 ataaaaatga aattaaaaaa attatcttta gcactctcga ctttattact cggttcagcc
      181 tttgccaact ctgctttagc ggaaggtcgt ttaaccgttt attgtagtgc cactaatgaa
      241 ctttgtgagc aagaagtgca agcattcggc aaaaaatata atgttaaagt agcatttgtg
      301 cgtaatggtt caggcagtac attggcgaaa attgaagcgg agaaaaacaa tcctcaagct
      361 gatgtatggt atggcggtac tttagatcca cattcacaag ctgcagaaat gggtttactc
      421 gagccgtata aatcaccgaa tctcgaacaa attatcgaaa aattccgtga tccggcaaaa
      481 ttaaaaggca actactcttc ggctgtgtat atggggattt taggttatgg tgtgaattta
      541 gaccgaatca aaaaactcgg cattgaaaaa gtgcctagca cttgggaaga cttgctcgac
      601 ccacgcctag ccggtgaaat ccaaattgcc gacccacaaa gctccggcac ggcttatact
      661 gcgattgcga ccttcgtaca acttttagga gaagaaaaag ccttcgacta tttccgcaaa
      721 ttacacaaaa acatttcaca atataccaaa tccggcatca caccggcacg caataccgcc
      781 cgtggtgaaa ccgctatcgg tatcggtttc ttacacgact atgcgattga gaagaaaaac
      841 ggggctaaca ttgaaatgac cgcaccaaca gacggcacag gctacgaatt aggtggtgtg
      901 agtatcctca aaggtgcaag aaatcttgat aatgcaaaac tgttcgtgga ttggtcgctt
      961 tctaaagaag ctcaagaact ctcttggcaa aaaggcaatg cgttccaagt attaaccaac
     1021 accaccgcag aatcttcccc ttatgctcta gatccgaaaa acttaaactt aatcaactat
     1081 gatttcgaga aatacggctc gagcgaagag cgtaaacgct tgattgataa gtgggtaaat
     1141 gaagtaaaat tagcgaaata gtgttaatct ttccactgag gggataagca attatcccct
     1201 ctctaattat aagaatctgt gaggtgttat gcagaatttt tccttttccc gaccgcttgt
     1261 ttgggtgctt atcgggttac tcggttttct cttgttaccg tctaaagcct tagattatgg
     1321 gctgtttgac tcaacctctg atgaactgct cgccgcaatg ggctgggcgt gctgttcgcc
     1381 tttattttcc tgtcagcgat tgtgctgaaa atcagcctcg gttatgcggt gttgccgttg
     1441 attattgcca ttatggggct tgcgacccca aatttagcaa cgctcaaagt aatgcagggt
     1501 gaccgcttta ttatcggctc gttactgagc attattctgc tgattttctt ttttattgtg
     1561 tatccgacca tcgccatttt tgtgtcgatg ttctacaacg gctcggaatt tgtgccaagc
     1621 caagtgctga caattttgca acaaccttat gtcgttcgag tcatcggtaa ctcgctctcg
     1681 gttgccggca cggtgggcgt tctctccacc ctattcggct tagcctttgc tctctacacc
     1741 actcggattg ctaaacgctc ggcgtttatc gggcggattt tctcgatttt acctatcgtc
     1801 accccgccgt ttgtggtcgg tttaggcgta accctgatgc ttgggcgttc cggctatgtt
     1861 actgaatttt tagtggatta ctttggcttt gccaacaatt ggctgtacgg tttcaccggt
     1921 attgtgatag cccataccct cgcgctcacg ccaatgtcgt ttatgatttt ggaaggggca
     1981 ttgaaatcca ttcacccatc ggtggaagaa gcagcttaca ccctgcgttc caaccgctat
     2041 caagcctttt ttaacattat tttcccattg ttaaaaccgg cattggcaaa ctccttttta
     2101 gtggtggcaa ttcaatccct cgccgatttc agtacgccgt tagtattggg cggtagcttt
     2161 gatgtgattg caacccaaat ctacttctac attgccggtt ctcaactgga ttatgcctct
     2221 gctagcacgc ttggggcaat tttgttggtg ttctccttag ccattttcgt gatccaatac
     2281 ctctggatcg gcaatcgctc ttatgtgacg gtgtccggca aatcctatcg gggtgatgtc
     2341 caagacttac caagcggtat gaaatggctg attatttgca ccttattgtt ctggggaacc
     2401 ttcaacttag tgctgtacgg cagtattttc tacggcagtt tcaccgtgaa ctggggtgtg
     2461 gattatacct taacccttga taactacatc aagctattcg ggcaagggtt tagcgatggc
     2521 ggtttccctt cgttaattca aaccgtgatt ttcgctgccg ctgccgcccc gattactgca
     2581 ctattcggct tgctgatcgc ctatgtgaca gttcggcgtg atttcaaagg caagaaaacc
     2641 ctggaatttt taaccctgct ctgctttgcc gtaccgggaa cggtggcagg tgtttcttac
     2701 attctcgcct ttaacgatgc cccgatttac ctaaccggca ccggtatgat catcattctc
     2761 tcaatggtaa tgcggaatat gcctgtgggt atgcgagcgg caattgccgg cttagggcag
     2821 ttggataaat cgctggacga agcctcgctc tcgctgaaag ccggttcgtt caaaacgatg
     2881 ctgtttgtgg tgttaccgct actcaaaccg gcactgctct ccgccctcgt caccagcttt
     2941 gtgcgggcaa tgacgactgt cagtgcgatt gtattcttag tcaccgccga cactcgtgtg
     3001 gcaacctcct acattctcaa ccgtgtggaa gacggtgaat acggcattgc gattgcctac
     3061 ggctcaattt taattgtggt gatgatggcg attatcctga tttttgactg gattgtcggc
     3121 gacacccgta tcgcccgttc taaggcgaaa aaaatgtaaa aagacatcta ctctctccct
     3181 ttatgggaga gagacagaaa aatacttcgt tcagaagtat ttttcagaga gagggatata
     3241 attaaaagga caatatatga acaacgattt cttagtatta aaaaacgtca ccaaatcttt
     3301 cggcaaggtg acggtcattg ataatctcaa cctcagtatt ccgcaaggta aaatggtgac
     3361 attactcggg ccgtccggct gtggtaaaac caccgtactg cgtttagtgg cagggctgga
     3421 aaacccgact tcggggcaaa tttttattga tggcgaagat gttacccaaa gttcgatcca
     3481 acaccgtgat atttgcattg tgttccaatc ttatgcgtta tttccgcata tgtcgattgg
     3541 cgataatgtc ggctacggct tgaaaatgca gggcgtaccg aaagaagaac ggctgcaacg
     3601 agtgaaagag gcgttggaat tggtggattt aggcggcttt gaagatcgct ttgtcgatca
     3661 aatctctggc ggacaacaac aacgtgtcgc cctcgcccgt gccttaattc tgaaaccgaa
     3721 agtgctactg ttcgatgaac cgctgagtaa ccttgacgct aacttacgcc gttcaatgcg
     3781 ggagaaaatc cgtgaattac agcaacgttt aaacattact tccctttatg tgactcacga
     3841 tcagtccgaa gcctttgcgg tttcagatga agtaattgtg atgaacaagg gaaaaattat
     3901 gcaaaaagct ccagccaaag agttatacct tcgccctaat tctttattct tagcaaattt
     3961 tatgggtgaa agcagcattt ttgaaggcac gatagctggc aaccaaatta atataaatgg
     4021 atatcaattt acgttagcaa atgctgaaca atttgagtta cccgatgggg aatacttagt
     4081 tggcattcgt ccagaagcta ttcatttagc tgaacaagga aatataagtc aactctgtaa
     4141 aattaaaaat gcagtttata tgggaaatca ttgggaaatt atagctgaat gggaagggaa
     4201 agatttatta gtcaatacta aacctgaaaa tttttaccct catatcaaac aggcctatgt
     4261 acattttatc gaacaaggtg tttttctttt aaagaaagag ctataacgaa tttatactaa
     4321 attaagagga aggtagttat aactatttag caattttgag aaaaataggc cgcatgcaaa
     4381 atctcttgat gacaagcggt cttttctcgc cga
//
LOCUS       DANLXB010000186         4412 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLXB010000186 DANLXB010000000
VERSION     DANLXB010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4412
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1145
                     /locus_tag="PXD41_002220"
     CDS             <1..1145
                     /locus_tag="PXD41_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL6289710.1"
                     /translation="KIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDDFVYHKN
                     SIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATDNYALVE
                     AAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGDQFHSDN
                     WVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGIDNEELI
                     QYLSRVSLSSVTQGTSQIGYHAVKLLYRKLNNLPVSTKPILIPPVKVEERRSTDYRSL
                     QDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVIHEEKLA
                     RATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            1238..2237
                     /gene="gntR"
                     /locus_tag="PXD41_002221"
                     /pseudo
     CDS             1238..2237
                     /gene="gntR"
                     /locus_tag="PXD41_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
     gene            complement(2291..2806)
                     /locus_tag="PXD41_002222"
     CDS             complement(2291..2806)
                     /locus_tag="PXD41_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL6289711.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            2993..4342
                     /locus_tag="PXD41_002223"
     CDS             2993..4342
                     /locus_tag="PXD41_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6289712.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
BASE COUNT         1157 a         1019 c          989 g         1247 t
ORIGIN      
        1 ataaaattgc cttacttttt aatgctaaca aaatttatga cagaggagta atgcagggca
       61 ttgggcagtt tattcaagca tcacaatgta cttgggatat ttttgtggaa gatgattttg
      121 tctatcataa aaatagtatc gaaagcctgt cgattgacgg cattattgcc gattttgacg
      181 atttggaaac agttgagcta cttaaagata ttgacgtccc cattgtagca gtaggcggtt
      241 cttaccaaaa ccctgactat taccctgacc ttccttatgt tgctaccgac aattacgcct
      301 tagttgaggc agcattttta cacctaaaac aaaaaggaat caaccaattt gcgttttacg
      361 gctatcctgc agaaacggaa aaacattggg cgatagagcg aaaaaatgcc tttattcagt
      421 tgatggaaaa atatgaacat cacccaaatt gttatattgg tgatcaattt cattcagata
      481 attgggttga attacaagcc aaattaggcg agtggttaca aaccttacca gcccacacgg
      541 gcattattgc cgttactgac gcaagggcaa gacacctgct tcaaacctgt gagcatttaa
      601 aaatcgctgt acctgaacaa ctttgcgtga tcggcattga taacgaagag ttgattcaat
      661 acctctctcg ggtttctctt tcttcagtca cacaaggaac atcacaaatc ggctatcacg
      721 ctgtgaagtt attatatcga aaattaaata atctaccggt ttcaaccaag ccgattttaa
      781 tcccgccggt aaaagtggaa gaacgccgtt cgaccgatta tcgttctttg caagacccaa
      841 tggtaatcca agctatgcac tttattcgtc accgagcttg ccaaggcatt aaagtagagc
      901 aagtactgga tcatcttaaa atttcccgct ctaaccttga acagcgtttt aagcaggaaa
      961 tgaataagac aattcaccag gtgattcacg aggaaaaatt agcaagagca acatatatgc
     1021 tcaaatttac cgagatttcg acccaagaaa ttgccaatgt gtgcggttat ccctctttac
     1081 aatatttcta tgccgtgttt aaaaaagagt ttggtaaaac cccgaaagag ttcaggcaag
     1141 agtagtaaca agcggtcaat ttcaccgaat attttgcaat tattgcctta tcttcagtta
     1201 taatcagcga aattaaattt tttcgttatc tattccaatg agaaaaccga aacgcccaac
     1261 tttgcaagac atcgctaccc atctcggcat taccaaaatg acggtcagtc gctttttgcg
     1321 ggatccaaac accgttgcca aggagaccgg cgagcggatt gcacaagcga ttgagctgtt
     1381 tggctatatc ccaaaccgtg caccggatat tctctcgaat gccaaaagcc gtgcaattgg
     1441 cgtgctggtt ccttcgctta ccaatcaagt gtttgccgat gtgattaaag gcattgagca
     1501 gattaccgac caagccagct atcaaaccat gctcgcccac tatggttaca gcgaacaaaa
     1561 ggaagagcag cggattgagt cgctgctttc gtacaatatt gacggcatta tcttatcgga
     1621 aaatcaccac tcgccccgca ccttgaaaat gctggaagtg gcgaatattc cggtgattga
     1681 gataatggaa agcggcgaat gtggcattca acaagcggtc ggatattgac aatatttctg
     1741 cggctcaagc aatggtcgag acaatgattc atcgaggctg ccgacaggtg gtgtatttcg
     1801 gggcgagaat ggataaacgc tctcagctga aaatgcaggg ctacgaacag gcaatgctca
     1861 aacacggctt aagcccacac agcattacta ctgcagagca ttcttctttc acgcttggcg
     1921 caagccagct aaaacaagcc ctgcaacaca ttccgcagct agacggcatt ttttgcacca
     1981 atgacgattt ggcaatcggg gcattatttg agtgccaacg gttaggcatt catgtgccgc
     2041 agcagattaa aatcgccggc tttcacggac acgatgtcgg gcaatccctc acgccacagc
     2101 ttgccagcgt catcacacct cgccttgaaa taggcagagt tgccgcccaa gagctgctca
     2161 accgtattca cggcgtacca caacaaagct ccataattaa cttgggctat cagatccatt
     2221 tgggggaaag tgtgtagccc ggacaagcgg ttaaatttgc aaaaaaatcc gcaaaatcca
     2281 ccacttgtga ttaaagcaac ggctcaactg ctttcacgca acgctccacc acctcgtcaa
     2341 aactgccgtc aatatcaata aatatcacat ctggttcgtc tgcctgcgga atttccagcg
     2401 tattaaattg gctttgaagc atttccggtt tcataaaatg ccctttgcgt tgttgcattc
     2461 gagccagcac cagttcaaac gagccgtgca agaatagaaa agtcacatcg gcattgcctt
     2521 gtcggatctg gtctcggtac tttttcttca atgctgagca gacgataatc cctttttcgc
     2581 ttttttgttc aaaactgaac actgcatcgt taatccgctc caaccacggt gtgcgatctg
     2641 catcattgag tggcgtgcca cttgccattt tcagtatatt ggcacgaggg tgtaagtcgt
     2701 ccccatcaat caattttatt cccaaccgct gtgcgactgc cgttcccacg ctggttttgc
     2761 cggtgctgga cacgcccatc aaaataaatg ctttgccgtt tgccattgaa tttccttgtg
     2821 ttactggtaa cgttaactta gccgttaatg taacaggtta tgctgaaaaa tcatctgcta
     2881 tttccagaaa acttgaagta gatcacattt ttaaaataaa agccctgcaa ccgtttactc
     2941 taaactgctt tttggttatg ttaccgataa caattcaacc ttaggagatc ctatgttact
     3001 gttcattatg tttgctgcca tcattttatt gctggtgctg attatgaaat ttaaagtcca
     3061 cgcttttgtg gcattgatta ttgtgagcct gctcactgca ttagctgccg gtattccggt
     3121 agataaaatc ctgccaacat tgttgaatgg ttttggtagt acgctggcat cagtggcgtt
     3181 actggtgggg cttggggcga tgattggtcg cttgcttgaa atcaccggcg gggcgaaagt
     3241 gcttgcggat acgcttatca ataaattcgg caaagaacgt gcgccttttg cgttgggcgt
     3301 tgcctcgctg ttattcggct tcccgatttt ctttgatgcc ggcttggtgg tgatgttacc
     3361 gattattttt agcgtggcaa aacagttcgg cggttcggtg ttgcgctatg cgtttccgtc
     3421 tgccggtgcg tttgcggtaa tgcacgcctt tctacctccg caccccggcc cggttgcctc
     3481 cggcgatctg cttggtgtga atatggggct gttagtcttg gtgggcttgg tttgtgcaat
     3541 cccaacgtgg tatatcggca cttacctgtt cagccaattt atcagcaaac gcattcacgt
     3601 tgatttgccg aaagcgtttt taaacggctt atcggcaaac gaaatggcag tacaaaaccc
     3661 gccaagtttt ggcaaggtac tcacggtgtt ggtgctgccg attatcctga ttttgtttga
     3721 taccggcttg aataccctct ccgttgctaa agtgattgat ggcagtgaaa tgtgggtgca
     3781 gagccttcgc ttaatcggca aaacccctgt tgctttactg attaccttaa ttgtggcgat
     3841 tatgctgttg cgggataatc gcagtttcga ccaaatcgaa aaaatctgta acaatgccct
     3901 tggcccaatc tgctcgattg tcttagtaac cggtgcaggc ggaatgtttg gtggcgtgtt
     3961 gcgtgccagc gggattggcg atgtattatc ggaaatgatg aaagacaccg gaatgccgat
     4021 tgtggttgcc gcctttatta ttgctacggt attccgtgtc gcacaaggct cggcaaccgt
     4081 tgctttaacc accacagcag cgttgattgc gccaactgtg gcggcagcga ctgatttaag
     4141 ccagttcgac ctctgtttta tcgtgattgc tatcgcctcc ggtgcgacgg tgctttccca
     4201 cgtcaatgac tccggtttct ggctgatgag ccgtttcctt gaaatggacg aaaaaactac
     4261 cctcaaaacg tggacaatgc ttgaaactgc catcggttta accggttttg cctgtgcatt
     4321 gattggcagc tggttactct aattccaacc ctgacaagcg gtctgttttc ttctaaaatt
     4381 tgcaaaattt ggcagagaat cgaccgcttt tt
//
LOCUS       DANLXB010000187         4390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLXB010000187 DANLXB010000000
VERSION     DANLXB010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1081)
                     /locus_tag="PXD41_002224"
     CDS             complement(<1..1081)
                     /locus_tag="PXD41_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6289713.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQL"
     gene            complement(1146..1577)
                     /locus_tag="PXD41_002225"
     CDS             complement(1146..1577)
                     /locus_tag="PXD41_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289714.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1581..3683)
                     /locus_tag="PXD41_002226"
     CDS             complement(1581..3683)
                     /locus_tag="PXD41_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6289715.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
BASE COUNT         1223 a          872 c          834 g         1461 t
ORIGIN      
        1 tcagttgtat aattcgttct gctaatgatt gaaattcttg gtcaaaattt tctttacttt
       61 catccattgt attcaaagca tgtccaaatt gacctgagtt tttaatttgc tcttttgtta
      121 aggaaaatac gggaactcgt agctcttggc taatagcaat caacgaatta aagtcggcta
      181 tgtgagccaa atcaaatggc tctaagtcag aattcgttga tttaagagca gcataaatag
      241 ctgtatcatc aatagcacaa tcaatagttt ttaataccgg cacaaaattc gtaatgactt
      301 catttctaat tcgctcaatc catttttcaa atgatttggc cggttgccct tttcttggtc
      361 gataacgttg ctgaatagta cctaaaaatt gtggcttatt tttaattgca taagatgatt
      421 ggttaaaacc attaagttct ttaaatgctt ttaactcatt atgccatttg cgaatatttt
      481 tagcgagcga accaactgct tgccagcaga aaaaatcagg tgatgtaggt acaataaagt
      541 aatcactaga cattaggata acttcattta atccacccac atttggacta agatcataga
      601 gtatgtaatc aatattgttt tgttcagcta ctttcttaat taaagtcgga agattgccgg
      661 gtatatttct tgttgctgga acaccggcag caatttttaa tgatacacta atttgcgaat
      721 caagctcgga aacattaagg tgaccaggta acaagaacag atttggattc agggtttgag
      781 tgatttggcc aacatttcca ctaaggtagt tatcagggct ttgtccgttt atcagtgctt
      841 caacaatacc ttccatagtc aaatgatgtc tattattgta aaaaagcgct aaatcactat
      901 cttctttgca ttgatcgtag ccaagtacca gaccggttag gttacattgt gaatccaaat
      961 cgactaacaa tacttgatag ccttgatttg ctaaactcca accaacatta aatgcagttg
     1021 tagttttagc aatacctcct ttatgattaa aaatactgat agacttactc ataataccca
     1081 taattctatg aaataattaa cccaccgaac tcatttgaga atggtgggtt aatgctttgc
     1141 tttagctagg ctgcaaatcc agattttctc atcagtttgc gatcaaagtt gtggcgaata
     1201 ggcttatcgg aacgacattc aaatgatgta atatcatttc ctgttttaat atcctgaatc
     1261 tgaacacttg cttcaaaagg tgatttaggg tctgcttcta tatgacctac aatataagat
     1321 tttcctgcat ttcttaattc gagcgagatt gttgtgaatt gtgaaccacc tgcaatctcc
     1381 gatgccggat ttttgagagc ttcttttaca ggatttttga atgtggtatt accgtgagag
     1441 tacacatagt ttcccccctc tttggtaact tttaacgttt ggttatctgt agttgtgcaa
     1501 gaatacacta cattgttatt tgcaaaagca ttcattgaga aaaatgctga taaagctaca
     1561 attgccattt ttttcatagg ttagtttcct tttggtgcgt tgataatgta atcggcttcc
     1621 tggttacgtc ttcgagcatt aacaccatta ttatgccctt gtaaatttcg gattgagtta
     1681 gctaaagccg tcatatcacc tgattgtgcg gagacggcag ccgctttttg aacactttct
     1741 agtttagata atgacccata gttgtatgat accgacgtta atgctgcttg tgcttgagga
     1801 gtcaatttag cccaaacgtc ggcaccaaca ttaccccttg caacattcat aaattgaggc
     1861 attcttcgtg ctaaatcacg ttcagcatct tcccggctta cataagtgcc tttttgaacc
     1921 cgatgaacca taccatctgc agtagtatag gtgtcagagc catatccggc acggttagca
     1981 tttacatccc atttcccgtg gcttaaatat ccttcaaact gtttgataag agccgttgct
     2041 tgttcattcg cattgccgtt catttgggca atttgggtat agctccctac attcacgtta
     2101 ctgacaatgt ttgttgggga ggctttatat gctccataaa aatcactcat gcctgagccg
     2161 tctgatttgg ggatagcaat atatctatcg ccaacggcat tttgtgcaga attagcaatg
     2221 ccactggtgt tgagattatt tgctccggct tgattgctta aattggcaaa gcgacggttt
     2281 ccatcaccca tcgcattatc atcaatagca agagcttgtt cgttcatctg ttgagtaatt
     2341 gcagctaatg ctgtattacc gttgattgaa cgttgcagtt ccatttcgag tttaacttgc
     2401 tcaatttctc tgtcaagtaa tttgaggttt ctttctgctt cttctactaa ggaagatttt
     2461 ataacatttg gctcacgcat accggctaac attgctcggc gaatcagtag caatttttcc
     2521 atttctttag aaatagctaa ttcttgcgat aaccttgcac ccagcaaggc tgcatccggc
     2581 gaagcagcaa tggcttctaa tacgcctttt gttacactga ccgttgatgt actcagtgaa
     2641 ttgagttgtt ccggcgttaa actatctaag tgattcagtg ccgcttctag ctttgtggct
     2701 ttttcaatag ttgtttgttc aataaaatgg gcgattcctt tcccggcttt agctccactt
     2761 gaactttgtt cacaagtttc acaggcatca aggaatgttt caccaatcac ttcacttgca
     2821 taggcagcag cctcgcttgg atttttccat tccgtacaaa gcataccatc acagcttgca
     2881 ataggtatat ctcctttttc taatggtcct cgtcctaaag cgaggttata tccggctcca
     2941 acaatgtcag caacgatagc cattggtttt tgatttttac caccacgttg ttcgccacct
     3001 acccaaggga tgcctttttc agcatctttt ttatccattt tcttcttggc tgccattgca
     3061 tcaggctctg tttcagcaat ttcagcggct cggtgtaatc cggccatctt tgctaattta
     3121 ctgtccattg ctaaatcagc aagttggtta gacatggctt cgcaactggt tttgaagttg
     3181 ttgaagtcaa gttttccttg atatagacca ttagaaagaa tgtcatacag ttgaggattt
     3241 gctcgttgga taatcatcgc cgggaggctg gcaactgcac cggttgctga ctcaataata
     3301 ttgccataaa gatctttaaa accttcagta ataccattaa gctggttttt aatggaaagt
     3361 ttaatatcaa agttgccaca agttaaattc gatttccagc caatgccaat cccatattga
     3421 tttggtctgc cacgggaagc tggtgcggaa atggcactac ctcctccaat ggagtagtgc
     3481 atataatcag aaaggacagg gtagtattcc gtgagagcgt tattaccaga aacgcctaga
     3541 ttaccagtcc tatagcctgt tgtattttca ataaaattac taatgctatt gccaacatta
     3601 acggtattac tatttgcgta tccgctcatg gttgtgagca ttatacaagc ggttagaaat
     3661 ttgagacttt ttgctttttt catttattta tcctaatagt gctgataatt taatgagtat
     3721 gtgtactttt ccagtccaca tgacctaaaa aaacttgccc ttgtttttta cagcaagaat
     3781 agggcctcca taatgcccag ctgtaattct cagtattgga gaaactatct gaatgggtag
     3841 cccaatcacc actgtgcgga aagactttag ggtaggattc ggaagtaaat accttaactg
     3901 ttacatctga gggtttatta gcaggactag cacttgccat agctgaaagc agtagtagtg
     3961 gtaaatagta aaatgtctta gcttgcataa atgctccaca aatagagtaa ttcacgttta
     4021 ccttaaaaga tgatttggtt agaagaaatc ggaaattgtt ttttggtttt ggagagtttt
     4081 tgttagtata taagttaatg taacaaggga gagtggatgt atgagcaata gaatacctaa
     4141 agcctgttat gcttacccaa aatcgccgaa caacccgttt aatagattgt cggttatcaa
     4201 tctataccag ccgaaatgtc tcccagcatt ctgaaaggga actctgtaaa attacaggaa
     4261 tgccacctaa acaataaatg gataatgcca gccactttat ccgttgtatt ttgtcacatg
     4321 cgtgattgca atgtcataat attacccgac ttggggatat tatgacattg caatcattgc
     4381 tcacttttct
//
LOCUS       DANLXB010000188         4373 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLXB010000188 DANLXB010000000
VERSION     DANLXB010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            99..1517
                     /gene="leuC"
                     /locus_tag="PXD41_002227"
     CDS             99..1517
                     /gene="leuC"
                     /locus_tag="PXD41_002227"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL6289716.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1530..2132
                     /gene="leuD"
                     /locus_tag="PXD41_002228"
     CDS             1530..2132
                     /gene="leuD"
                     /locus_tag="PXD41_002228"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL6289717.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2204..2668)
                     /locus_tag="PXD41_002229"
     CDS             complement(2204..2668)
                     /locus_tag="PXD41_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289718.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2692..3198)
                     /locus_tag="PXD41_002230"
     CDS             complement(2692..3198)
                     /locus_tag="PXD41_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289719.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3221..4198)
                     /gene="dusA"
                     /locus_tag="PXD41_002231"
     CDS             complement(3221..4198)
                     /gene="dusA"
                     /locus_tag="PXD41_002231"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL6289720.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
BASE COUNT         1357 a          964 c          903 g         1149 t
ORIGIN      
        1 ttatattcac tccatatcag caagcggtca tttttgcaaa attttttgca aatttaaccg
       61 cttgtattaa aagttaccct tttgagttgg aacattttat gcaacaagcc aaaaccctat
      121 atcaaaaact attcgactca cacgttgtgt atgaagccga aggcgaaacg ccgattattt
      181 atattaaccg ccacttaatt cacgaagtta ccagcccgca agcgtttgac ggcttgcgtg
      241 ttgccggtcg ccaagttcgc caagtcagta aaaccttcgg cacaatggac cacagtattt
      301 caacccaagt gcgtgatgta cagcaacttg aagggcaagc gaaaattcaa gtattagaat
      361 tagaaaaaaa ctgcgaagaa accggtatcc cactgtttga catcactaaa aaacaacaag
      421 gtatcgttca cgtaatgggg ccggagcaag gcttaacttt acccggtatg accattgtat
      481 gtggtgactc gcacaccgcc actcacgggg cctttggtgc gttagccttc ggtatcggta
      541 cttccgaagt ggaacacgtt ttagccaccc aaaccttaaa acaggcccgt gcaaaaagta
      601 tgaaagtgga agtccgtggc aaagtaaacc cgggcattac cgcaaaagat attgtgcttg
      661 cgatcatcgg taaaacaact atggctggcg gtacaggcta tgtagtggaa ttttgtggcg
      721 aagcaattcg tgatctttca atggaagggc gaatgacagt gtgtaatatg gcgattgagt
      781 ttggtgcgaa agccggtatt gttgccccgg atgaaaccac gttcgcttac ttgaaagacc
      841 gcccaaatgc accaaaaggt caagattggg aagatgccat tgaatattgg aaaaccctca
      901 aagccgatga gggtgcagtt tacgatgcgg aagtgatctt agaagcaaaa gacattgctc
      961 cacaagtgac ttggggaacc aacccggggc aggtgatcgg tattgatgat gtaattccaa
     1021 atccggaaga tatggccgat cctgttactc gtgcctctgc ggaaaaagcc ttagcttaca
     1081 tcggcttaga agcccataca gatatgaaag atgtaccggt tgatcaagtc tttattggtt
     1141 cttgtactaa tgctcgtatt gaagatttgc gtgctgcggc agcagtaatg aaagggcgta
     1201 aaaaagccga caatgtaaaa cgtattctcg ttgtgccagg ttcaggtttg gtaaaagagc
     1261 aagcagaaaa agagggcttg gataaaatct tcattgaagc cggtgcagaa tggcgtaacc
     1321 cgggttgctc aatgtgtttg ggaatgaacg atgaccgctt gggcgaatgg gaacgttgtg
     1381 cctctacgtc taaccgtaac tttgagggca gacaaggacg taacggtcgt acccacttag
     1441 tcagcccggc aatggcggct gcggcggcgg tgttcggtaa atttatggat attcgcaaag
     1501 tgtcattaaa cgcataatag gaggaaaaaa tggcaggtat taaacaacat tcaggcttgg
     1561 tcgttcctct tgatgcagcg aacgtagaca ccgatgcaat cattccaaaa caatttttgc
     1621 aagccattac tcgagtcggc tttggtaagc accttttcca cgaatggcgt tatttagatg
     1681 cggaagagac tcaaatcaac cccgatttcg tactgaactt cccacaatat caaggtgcaa
     1741 ccattttact cgcccgtaaa aatttaggct gtggctcttc tcgtgagcac gccccttggg
     1801 cattggcaga ttacggtttt aaagtaatga tcgccccaag ttttgcggat attttctaca
     1861 ataacagctt aaataaccat atgttgccga ttaaattaac cgaagaggaa gtcgaagaga
     1921 tcttccaatg ggtgtgggca aatgaaggaa aacagatcca cgttgattta gaagcgatga
     1981 ctgtgactgt tggcgagaaa gtttatacct ttgagttaga cgaattccgc cgccactgct
     2041 tattaaacgg tttggataat atcggcttaa ccctacaaca cgaagctgcg attgctgctt
     2101 atgagaaaaa cattccggca tttttacgct aattaaaata caaaaaaacg gctaacatct
     2161 ttaaggcgtt agtcgttttc tttttagcca ttttctttgg caattagcct tctcggcact
     2221 ctaaccaagg cacattattt ttgtaataag ttgaagtaaa ctctcgtgcc actaactcta
     2281 caaaactgcc ttcaatcggc tgataagaac gataacgcac ttcaaatttt gttgctcttg
     2341 cattcaaact gatgttggca agatggtcga acggataaac ctttccgcca tcaagttgaa
     2401 aatagatacc aaaattctct tgcttacggc tttcagacca aagtggaaaa taggttgcca
     2461 aatatgaact gctgcctgtt gcaaaattct tacaataata gctataacgc ttaaaatctt
     2521 tcggattatt caattccgct tggctgatat tctgtttcaa atatccaacc tgtgcttgtt
     2581 gcttagttga gtttgattgt ggtgagggcg tacaagcaaa taagccaatt gccactgttg
     2641 ccattaaagc aattttgaat ttattcataa aaatcccgat aaaatattaa attaaatctg
     2701 atatttgctt ttatcgccaa tatcaaaatg cagcggcatt cgccattttt gaatactcag
     2761 cacaagaagc aacaagccac agacaaggct taaaatttgc accaataaag accattctag
     2821 tgcaaaagca atccacaata ccgccactaa aagcggttgg aaatttaagc cgaatactct
     2881 aaaacagaaa tattctttat agcttaatcc gccgatcacc agtagcattg ccccgaacgc
     2941 aagcaaaggg aaattaaaca cagcaccaag taagccaatc caaacagaaa attggaaaat
     3001 caggcgaaac gatttggcat aaagatgcaa agaagatgcc aacattgtgc cagatactaa
     3061 taaaccatat tgtgccgttt gcggataata aggcaataaa agcaacatca atgtagctaa
     3121 cacaaaaccg ctgcggtaaa tgatgacggt taaataatcc caaaaatcca ttggcgattg
     3181 aatatgtgga tctgccataa ctgcctcctt aaacaataaa ttagccaata aacgcaaggg
     3241 cttgttccac tacttctaca ccggctcccg acttagtggc attttcactt aaatgacgac
     3301 gccactgcct cgctcctttg caatgttgaa acgcaccaag catatggcga acgatatgat
     3361 ttaaatagac acctttggca agctcacgtt caatataagg gaacatcttt tccaccgctt
     3421 cttttgccgt tacaagcggt cgattttcat taaaaatttg cgaatcgatc tcgcctagca
     3481 ttgacgggtt ttgataggcc tcacgcccta ccattacccc atcaacaaac tgcaaatgct
     3541 gtttaatttc ctcaatggtt ttaatgccgc cattgatgct aatctttaaa tgcggaaaat
     3601 ctcgcttgag ctgataaacc cgatcataat ctaaaggcgg aatttcacgg ttttccttcg
     3661 ggcttaaccc tgtcagccac gccttgcggg cgtgtacgat aaaatcattg ctataaggtt
     3721 gcactttttc gataaaatca cacaaaaatt catagctgtc taaatcatca atcccaatac
     3781 gatgtttaac cgtgaccgga atttccaccg catcttgcat tgctttaata caatccgcca
     3841 ctaaatctgc ttttgccatc aaacaagccc caaacatacc gttttgcact cggtctgacg
     3901 ggcaaccgac atttagatta atctcggcat agcctcgctc tgccaccaat ttggcacaat
     3961 gagccaactg tgccgggtcg cttccaccca gttgcaaagc caccggattc tcgctcggat
     4021 catattccaa caaatcatat ttggcgtgaa taatcgccgg ggcggtgatc atttcggtat
     4081 aaagcaaggc ttgacgacta aattggcgat gaaaatagcg gcagtgacgg gttgtccaat
     4141 ctaacattgg agcaaccgaa aaacgtccac ggtaaaaagg ttgaatttcg ttagtcataa
     4201 aaatatcaaa ataaagcggt aaaaaatcag taaaaaataa ccgcttgtaa gcgattcaaa
     4261 acaagcagcc atcatactcg aaaaagccag ataaacatag tttcctcaag gcttccccat
     4321 ctatctgcgc acttttaaaa caaccttaaa acacaatata tagtgtttca aca
//
LOCUS       DANLXB010000189         4344 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLXB010000189 DANLXB010000000
VERSION     DANLXB010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4344
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(14..631)
                     /locus_tag="PXD41_002232"
     CDS             complement(14..631)
                     /locus_tag="PXD41_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL6289721.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(644..835)
                     /locus_tag="PXD41_002233"
     CDS             complement(644..835)
                     /locus_tag="PXD41_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289722.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(838..1158)
                     /locus_tag="PXD41_002234"
     CDS             complement(838..1158)
                     /locus_tag="PXD41_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289723.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(1169..2050)
                     /locus_tag="PXD41_002235"
     CDS             complement(1169..2050)
                     /locus_tag="PXD41_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6289724.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(2054..3991)
                     /locus_tag="PXD41_002236"
     CDS             complement(2054..3991)
                     /locus_tag="PXD41_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6289725.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(4006..4233)
                     /locus_tag="PXD41_002237"
     CDS             complement(4006..4233)
                     /locus_tag="PXD41_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289726.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
BASE COUNT         1007 a         1162 c          805 g         1370 t
ORIGIN      
        1 agtaataaac attctaaacc cccgccatat ctaaactaat cggctgatac tttccgtttt
       61 catcacgttt ataaaaacgg atataacctt tactaccgat cacttgtacg ctatctgaaa
      121 tcgctgtcat tgcttgattc catcttgcat catcaatctc aacacggcgg agagagagaa
      181 tttttgctgt agataaatta ccttccttat ccacctcaaa cgcattatca attaaggcct
      241 taagctccgg ttttgcccct tccgaccaat cgtgcaagca ttcatcaatc aaggcttttg
      301 ctgcgtgaat acgctcatca aagcgaatat tctcttgcac tgctaactgc aacttatatt
      361 caccgtcata agtaaatagt gtgatattgc cttttgcacc gccaattttt actccatatt
      421 tgtcagccga taggctgaca aaagccccca cgtcatcaaa tacggattgt ttaaaatcac
      481 ctaacgcttt gcttaacgct tgtgctttgc ttacaaattg gcgaactaat tcatcacgtt
      541 ctttgtcgat ttcttttact aatgcctccg gctttaaatt gccatcagca tctttccagt
      601 aaatttcatt accgattgtt actttactca taatacttcc tctctattcc aacccgactt
      661 tcacggtgcg gattgcttta ccgttatatt tcactctttt gttgtgagca ggggacgaca
      721 taaaccgcac tgttttcgcc tccaccccca accgttctgc taactcttcc gccgtaccgt
      781 cagccacatt ctcttcgcca acatacaggg cataaatcat tcgccgtttt ttcatttcta
      841 caccttcgta acacgttcag actcccacac gcatttcacc ccccgcacct gcatttgata
      901 gctgtcatac cgtctgccgc ctttggtttt cattccaaac aggcttgcca agccgttctt
      961 gactaaatcc tgtgttttgc agttatcccg taagaccaag cggggtgggc ttttcgcttc
     1021 aaactccact cgttcaactt ccaactccat cgcctcacat tccaaagtgg caatttctaa
     1081 cttcacaagg ctgtcgtgga taaacgcatt taaggggttc atcatttcgc ctgctttttc
     1141 gctgtaaacc ttttgcataa cttgctcctt agctaatcaa catcttgcta tattgctcaa
     1201 ccaaatcttt actaattggt gtttggttaa tctcgctaga ccgcaccacg ccacgcatta
     1261 acttacttaa tcggcgggca ttgccgtgac aagctttaat tagcggggca ttaaattcat
     1321 ttgtacctaa cgcactttcg gctaatagcc ccaaatcttc ctcgctcaag gcatttccca
     1381 aatcacaagc aaaacctact cggctataaa gctgtgccag ctcattattt ttacctttaa
     1441 gattaaccaa caatctcggc ataccggcta acaccacgcc cacgctggtt aaatcgtgga
     1501 ttcggcggat aaactccagc gagcgggtcg aaagtaattc agcttcatca atcattagca
     1561 acctttcaga gccttttaac ttgttcacaa tgctttctaa tagttcgtta tttacccctc
     1621 tggcatttgc ccccaccgcc tcggcaatct tgcggagcaa gactttaggt gtgcaactcg
     1681 gatcaacctc aattaatgtt gcagagctgt ttctgcgttc gtattctttg agcatttggg
     1741 ttttacctaa gccggctgcc ccaaaaatca cattaatttc gccttcaata tgggcaaact
     1801 gcattacctc cattcctctg cgtgccgcca aagttggcac aaaagcagcg ttatatttcg
     1861 cttccaccac ttttgcctta tcacgctcaa tcagctcgtc tactttgcga tccatttcag
     1921 ccacattgcc gttataatcg cctttgagat acagactgac tgtggcaacg gatacaccta
     1981 aaagctgtgc cacttgtttt tgttgatagc ctttgctatc cattaaggct ctaagttctt
     2041 ggtttttcat cgtttagcct cccactgcta actttttttc gtaatcctct ttttctgctc
     2101 gggtcaaaaa aatcggttct acttcttttt tcggttttct tgccgttgcc agcaagctaa
     2161 aatcgttttt ctgctcaatg gttaaaaccg ggtttaattc cgcattaatc tcatcaagct
     2221 gttgctgttt aaggttggct cggcgtttat ggcgttcttt acgctgctgt tctaccatcg
     2281 ccaccgggaa tgcctctcgg gtgttaccgt tccaaattgc ctcgcaaata aacctgccgt
     2341 ctttggtacg cacctgcacg ctctcggcat tgtgaatatc aatcccgatc accacttctt
     2401 cacggtcaaa atccagtaat ttcaagttaa aatagtggtt gttattccaa cttacccaac
     2461 ctcgatccgg cttacggata aattccggtc ggctcatatc ccgcaactca atagggctta
     2521 acatcaccac atcttctgcg tgcaacatct gctgatattt gcgtgccggc gtggtacgga
     2581 tttccgagtg aatatgctcg ttgttgtacc agtcaatcac cgattggatt acttcaatca
     2641 actgttgcca cgttggcaat ttgccttggg ctttacgttg tagtggggtt aattcccctt
     2701 tggcatttgc cagtgagttc accgcataca gggttttgcg aacggtttcc ggatctgcac
     2761 cggttgcata gccggtttca aactgtcggg caatcgtcat accgatggtt ttatttaagc
     2821 gttcaataat gcctcgcccc tgcggattgc ccgcaatccc tgtttcgtgt cggataccga
     2881 ggcggggcaa catccccgtg atttccgcat ccaaaaattt attcttttca ccaccaccgt
     2941 tatccgagta gtagattgcc ggcacaccgt gtaggctaat ggcgtggcgt agtgcatcag
     3001 ccaccgcaaa ggcgttctca ctgagtgcca gcgaccagcc caccactttt ctaccagcac
     3061 catcgacaat cattgtcagc tcaggggtaa acggcttacc gtgtatcggg tgggctactt
     3121 tgagcttcag tgagtgaccg tcaccaatcc atacatcatt tgctcgaagt accgaccaat
     3181 cccgcttcac atagctcagt aactgcttgt aatgcgagcc ggtgcgtctg ccgtactctt
     3241 tcacatacaa cggcaactta ttcatcgctc gctgtacttg gcttaggctg gggcattgtg
     3301 ccaacagtag cgggttgtct gcatactgat acgcccattc cacctcaaat tctcggtagg
     3361 cttcggtgag gcaaataccg tttttctgcc gatatacgcc taaaaaagca cttagccacc
     3421 aaatttcttc cggcttggtc tcctgccgta cctgtggggc aagcagtttc aaccgttgct
     3481 cggcgttctc tgccttgcag taatccacca cccagccgtt taaggttcgc accgagagtg
     3541 tgcgttttgc cgtcttttta gcatttgcta cggcaaccag ctccgccaag tgcggtggca
     3601 tttcgccttg tttggcaagg ttgcaaaggt aggttatcgc tttaatccgg ctcattgagc
     3661 cttccaactc caacacatac gccaccagtg ccattcgtgc atcagcaatt tctcgctgtt
     3721 tggtggtcag gtttcccaca tccacctctg cacgcactac cggtaacttt ttcggcttgg
     3781 cttccaccac cgccgacata aagcgggagc ggatttcggt ttgaacttcg gtgggtaaag
     3841 agttaatgtg atattcaaaa ccacctcctt taaccccttt caatggacga gttgcccatt
     3901 gttctttttt ggcttgtcta gttacatttg ttgggtattt tgataagcca ctaatacctg
     3961 ctaattcttt tgcactaaac caatctttca taacagctat ccttgttatg caacatcagg
     4021 gtaacgacta ggccatattt cggctggcgt ttttcctaat gcttttgcga taatttcttc
     4081 accgttttta taaggtttat caagagcatt tcttactgtt gttttggaaa gcccattctc
     4141 aatccctaac tgagaaaatg ttattccttt cttcatcaat tcagctcgaa tatcagctct
     4201 atgcatatct tgagctcttt tctttttatt cattttgtga gatcctccac atttagttta
     4261 tttgctacgc tttagcgtac ttgattaact acaggactaa atataatact tattcttttc
     4321 taaatcaata gtgatttaat aaat
//
LOCUS       DANLXB010000190         4337 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLXB010000190 DANLXB010000000
VERSION     DANLXB010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            334..975
                     /gene="sodA"
                     /locus_tag="PXD41_002238"
     CDS             334..975
                     /gene="sodA"
                     /locus_tag="PXD41_002238"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL6289727.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(1038..2162)
                     /gene="alr"
                     /locus_tag="PXD41_002239"
     CDS             complement(1038..2162)
                     /gene="alr"
                     /locus_tag="PXD41_002239"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL6289728.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            2292..4253
                     /gene="recD"
                     /locus_tag="PXD41_002240"
     CDS             2292..4253
                     /gene="recD"
                     /locus_tag="PXD41_002240"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL6289729.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1357 a          820 c          922 g         1238 t
ORIGIN      
        1 gtgacataat ggtggtaata atcgttgtca tcatattaaa acaattcatt ggcggaatct
       61 cggtcaagag agtgaataat ggttcaagaa tgcgtgaaaa taatgccttt gtcaatgggc
      121 ttaacgctgt ttttcaccac atttttttaa atttctttgt ctttctatat aaaacaatta
      181 aaagcaagaa tttgattagg aacctttcta aattagatag tgaaataatt ttgttctaga
      241 tcaaaaaaat gtgcattttt tgtgtgtttc ttgataaaat gtactcggag tttaactctg
      301 attaacctat ttactatttg agaggaatta actatggcat atacattacc agaattaggc
      361 tacgcttatg atgcgttaga gccacatttc gatgctaaaa caatggaaat ccaccattct
      421 aaacatcacc aagcttacat caacaatgca aatgcagcat tagaagctca ccctgaatta
      481 ttagaaaaat gtccgggtgc attaatcaaa gatttgagcc aagtgcctgc agaaaaacgt
      541 attgcagtgc gtaacaacgt aggtggtcat gtaaaccaca ctttattctg gaaaggttta
      601 aaaacaggca ctaccttaca aggtgcatta aaagaagcga ttgagcgtga tttcggttca
      661 gttgaagctt tccaatcaga atttgaaaaa gcagcgacta ctcgtgttgg ttcaggctgg
      721 gcgtggttag tattagaaga gggtaaatta gccgttgttt caaccgctaa ccaggacaac
      781 ccactaatgg gtaaagaagt ggcaggcgtt tcaggctatc cgattttagt cttagacgtt
      841 tgggaacacg cttactactt aaactaccaa aaccgccgtc cggatttcat taaagcattc
      901 tggaacgttg taaactggga cgaagccgct cgccgttttg aagaaaaagt agcaacctgc
      961 ggttgtgcga aataatattt tcgatcttga ataagataca agcggtaaaa tttgttgaaa
     1021 attttaccgc ttgttgtcta tttatattca aaaatcacac gaggagtgag tttagtaatc
     1081 agctcatagc taatcacgcc aatgtgtttc gccacatctt caattaatag ttgctctccc
     1141 caaaaaatgg ctttatcgcc cactttatct tggctctctg cacctaaatc gaccgtcagc
     1201 atatccatcg aaactcgacc gacaatcggc actattctac cgttaatcaa cacaggggta
     1261 ccttcaggag cattgcgagg gtagccatcg ccgtagccca ttgcagtcac gccgagtttg
     1321 gtatctttag ggcttaccca agcaccacca tagcctacag gctcgccggc tttatgggta
     1381 cgcacagcga tcagggaaga ggagagcgtc attaccggct taaaacctaa atcggtaatc
     1441 ggcgtatagt ggggagaaat gccgtgcata ataatacccg ggcgaaccca atcataatga
     1501 gcctgtttcc aataaagaat accgcttgag gcggaaatac tgcggtcgtg atcctgatat
     1561 ttttgcgtag cttgctcaaa caccgcaatt tgtttttcgg tatagccaca atcgagttca
     1621 tcggcacggc taaaatgact cacaaagctg attgaattga ccaaggcaca atttttcaaa
     1681 cgttcaacaa agtgatcgac ttgctccggg tgaatgccta agcggtgcat tccggtgtcg
     1741 atttttagcc aaatgttaat cgggaagtag attttcgctt tacgagtcca aaagcctttt
     1801 tgttgctctg cctgccattc ttttgctact tgctcgagta attccagttg ttcgaggtta
     1861 tgaatgacgg tatcaaactt gcgggaaagg gttttgagta gctcttctcg gtcaaaaaaa
     1921 ccttcaacta acacaatttt gcctgtgtat ccggtttctt gaatttctaa ggcttcacgc
     1981 aaacgggcaa ctccaaagcc atcaaccata tctgctaatg tgccggcagc cggcaataag
     2041 ccttgcccgt aagcattggc tttgatcatc gccaataatt tttgctgtgg agcgaaagat
     2101 ttgatcaggc gaatattatg gcggagggct tgactatcaa tggttgctgt tgctggtttc
     2161 atacttatct acatagttaa aatcacaaga aaggctaaat tatacgccta aaataaaaaa
     2221 tcccttagaa aataatgcaa aaaagattag tattatcact taatgttagg tggtcgattt
     2281 aaggtttgat tatgctgaat ttattattgg aacttaaaca agaaaaggcg atttctgact
     2341 taaattatca atttgcccgt tttattgata ataagcagaa accctatggg tattcgcctt
     2401 tggagcaaga tttagctgtg ttagccgctg cgttggtttc ttaccaagtg ggacttgggc
     2461 atacggcatt acgtttggaa aatctcagtc tttcttctct ttttgaatta aatagcaagc
     2521 cacaaactta tcatttgctc gaacaaattt tgcaaaaaat tgagcaaatt ccaccgcttg
     2581 aatggcagag tgtgctgaaa aatcatatcg cttttagcta ttctcccgaa acaattaaac
     2641 cgatgttatt ccaaaacagc ttgctctatt tttatcgcta ctggcaagcg gagcatcgca
     2701 ttgccggtta tttacaacaa gcggttgatt tttcggaaaa atttgcaaat accgaattaa
     2761 accaaagcat tctcaaccaa ctattcactg ggaaagctca aactatcgac tggcaaaaga
     2821 ttgccgttgc aacagcatta gaaaagcagt ttagcttaat ttcaggtggg ccgggaaccg
     2881 gaaaaacaac tacggtagta aaattattac tcgggctgca attaaaacag caagcactac
     2941 agaaaccata tttgcaaatc gctctggctg caccaaccgg aaaagcagca gcaagaatga
     3001 aagagtcgct ggaaagcaag ttggcggaag aaaaggggtt atctgaggag ttaaaacgct
     3061 ctattccaac tgaagcagtg actattcatc gcttgcttgg tgcgagacca ttaactgaga
     3121 aaaccaaata tcataccaaa aatccgtggc actatgattt ggtcgtatta gatgaggctt
     3181 caatgattga tttatcaatg atggagaaag ttgttcaagc gctcaaacca aactctcgct
     3241 tgataatgct gggagataaa gatcagcttg cttctgtgga agctggttca attatggggg
     3301 aacttggctc ttttattgat aatggttata gccaatccca ttgcgattac ttaaaagccg
     3361 ttaccgacta ccaaattgaa gccggtaatg cgttgccgat tggtgattgt ttatctcact
     3421 taaaacatag ctatcgattt ggcgaaaaag cctggattgg agagcttgca aatgcagtaa
     3481 atgatcaaaa aattaacctt tcgtgggaga ttttcgacaa atataaaaac agtgataagt
     3541 tagaaaattt ctgttatccg gaaacgaaag agacaacgga taaatcaagc tggattgaaa
     3601 aaagtgtgca aatggtggtg gataaagcgg ttgaacttta tcgtgattat ttacaagcgg
     3661 ttcaaaaacg ggagaaaaat ccagattcag tgagtgtgaa agcgattttt gagaaatttc
     3721 aaaaagtccg aattttatca gccttaaggg taagtgaact gggggttgaa cgtcttaata
     3781 tggcgattgc ggaaggcttg cggaaagcta gcttagtgaa atttaatcat agccgagacc
     3841 gctatatcgg aaaaccgatt ttaatgacag aaaatatgcc gataaatagc atagccagcg
     3901 gtgatgtcgg catcattttg ccggacgaaa atggagaaag ccgagtttat tttgattcct
     3961 tacaggaaaa tagagaacac catagtttgc ctctaggtag ggtttcaaat tatgaagcag
     4021 cttatattat gactgtgcat aaatcgcaag gttctgaatt tgaacatacg gtattggtgt
     4081 tgccccattc gatttccccg gtgctgacga aagagttgat ttacaccgca atcacaaggg
     4141 caaaagataa atttacctta tttggtagcg aaaaagtttg gaaatacagt gttggtgcca
     4201 aaaccgaaag acaaagtggg ctaaaagaac aaataagagg caagtttagc taaattaata
     4261 ctcgttttgc cgtaaaaata cgcaagcggt catttttttc aaatttttta caaaaaccgc
     4321 ttgcgttgtt tttgttt
//
LOCUS       DANLXB010000191         4252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLXB010000191 DANLXB010000000
VERSION     DANLXB010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            78..3677
                     /gene="putA"
                     /locus_tag="PXD41_002241"
     CDS             78..3677
                     /gene="putA"
                     /locus_tag="PXD41_002241"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL6289730.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            3786..>4252
                     /locus_tag="PXD41_002242"
     CDS             3786..>4252
                     /locus_tag="PXD41_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL6289731.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAEN"
BASE COUNT         1213 a          958 c         1037 g         1044 t
ORIGIN      
        1 ataacaagcg gtcggtttta tcttaaaatt tgcaagttta tacataaatt tgatcgcttg
       61 ctgtatagaa aggaaaaatg atgtcatacc aacttttacc taacaccact atccgtcctg
      121 aattgagccg tcattaccgc tttgatgagc aaaccctggt gcaaaatctg atagaacaag
      181 cacattgtga tgaacaggct gataacatta aaaagctcac tacccaatta gtcggtaaag
      241 tccgaactgc acgccagaaa gcaagcgggg ttgatgcgtt aatgcacgaa ttttcactct
      301 ccagccaaga gggggtggcg ttgatgtgcc ttgccgaagc attactacgc attcctgaca
      361 ccgccactgc ggataaatta attcgagaca aaattgccaa aggggattgg cgttcacaca
      421 ccggcaacag cccctctctg tttgtgaatg cagcggcgtg gggcttggtg attaccggca
      481 aattggtttc aacccacagc gaaagctcac tctcatcagc actttcacgc ctgatcgcca
      541 aaggcggaga accgctgatc cgcaaaggtg tggacgtagc aatgcgtatg ctcggcaaga
      601 aatttgtaac gggcgaaacc attcaacagg cgattaaaaa cggcgaaaaa cgcttcgcaa
      661 tgggttatcg ttacagctac gatatgctgg gcgaagcggc actcaccgcc gaagatgcca
      721 aacgctatta caacgactat gttgcctcta ttcacgctgt gggtgccacc tcgaaaggct
      781 tgggcgtgta taaatcctcg ggtgtgtcgg tcaaactctc cgccattcac cctcgttatt
      841 ccctttccca acaccaacgt gtgatggacg aactctatcc acgtctgaaa gaactgttct
      901 tgctggcgaa aaagtatgac atcggcttga acattgatgc cgaagaagcc gaccgcctcg
      961 aattgtcgct tgatttgatg gacagactgc ttgccgaccc tgatttggca gggtttaacg
     1021 gcattggttt tgtggtgcag gcgtaccaaa aacgttgccc gtatgtgatc gagcatttaa
     1081 ttgagaccgc ccgtaaacat aatcgccagc taatgattcg cttggtaaaa ggcgcatatt
     1141 gggacactga aatcaagcgg gcgcaaatgg acggtgcaga gggctatccg gtcttctccc
     1201 gtaaggtgca taccgatttg aactacatcg tttgtgccaa aaaattgctg gcggcgcaag
     1261 atgtgatcta tccgcaattt gccacccaca acgctcaaac tctcgccacc atttaccact
     1321 tggcacaggg caaacgtttt gagtttcaat gcttgcacgg tatgggagag agcttgtacg
     1381 accaagtggt tggcagcgat aatcttaacg tgcaatgtcg catttatgcc cctgtcggta
     1441 cttatcaaac cctgcttgcc tatttagtac gtcgcttgtt ggaaaacgga gcgaacagct
     1501 catttgttag ccaaattgtg gatgaaaatc tcagtgtaga tgatctggct caagcccctg
     1561 ttcaaaaagc agaactgacc aatggcacta tgcacccgaa aattccattg ccagtcgatt
     1621 tatttgacga caatcgtgtt aattccaaag gctatgattt aactgatgca gtaagcctac
     1681 aaaatttaga aaatgccctc aatgaactta ccaaacagca ttaccgtgct gaaccacagc
     1741 tggcaaatga taatacaagc ggtcaagaaa gccgaaaaat ttacaatcca gcgaaccaag
     1801 ctgaattagt cggcgaagtg attgatgcca ccgaaaacga tatggaacag gcgtttgaaa
     1861 gtgcggcggc gttccaaagt gaatgggcga atacttcccc tgcggtgcgt gccgagtgct
     1921 tagaaaaaat ggcggacttg atggaagcca atatgccaca actgttcgat ttggcggtgc
     1981 gtgaggcagg caaaacgctc aacaatgcaa ttgctgaagt gcgtgaagcc gtcgatttct
     2041 gtcgttatta tgccaaagag gtacgcaaca acattgaagc atacaaaaat ccgcgtggca
     2101 ttgtagtagc aattagcccg tggaactttc cgttagcgat ttttgtgggt gaagtttcat
     2161 ctgcgttggt ggcaggcaat gtggtactag caaaaccagc tgaacaaact tcgttaatgg
     2221 cacattatgc tgtcagcctt ttctaccaag caggtgtgcc gaaagcggcg ttgcaatgct
     2281 taccgggtag aggaaaaacg gttggggtgg cgttggtggc agatcatcgt gtgaacggcg
     2341 tgatttttac tggttcaaca gagacagcta aaaacattaa ccgcaatttg cacaaaaacg
     2401 agaaaattat accgcttatt gccgaaactg gcggacaaaa tgcaatgatt gttgatagct
     2461 cggcactggg cgagcaggtt gtgatagatg ttttaaactc cgcatttgac tcagcagggc
     2521 aacgttgttc ggcattgcgt gtgctgtatc tgcaacgtga tgttgccgat cacattctca
     2581 caatgctcaa aggagcaatg gcggagttga aagttggtct tccacaacac ttaactaccg
     2641 atgtcggacc agtaatcgat aaagtcgcac aacaacgctt gctcgatcat attgaaaatc
     2701 tcaaaaaatc ggcgaaaagt tactatcagg tggctatctc ctctgaaatt gccgaaaatg
     2761 gtattttcgt accgccaacg ctgttagaaa tagatcatat cagccagctt aaacacgaag
     2821 tattcggacc ggtgctacac gttatccgtt ttgatgcgga taaactcgac caagtgattg
     2881 ccgacataaa ctccacaggt ttcggtctaa ccagcggttt gcatagccga attgatgaaa
     2941 cggtggattt atggttgaaa tctgtccacg ctggaaatct gtatgtaaac cgtaacacgg
     3001 taggggctgt ggtcggcgta cagccattcg gtggaatggg gttatcagga actgggccga
     3061 aagctggcgg gccgctctat ctacaacgtt tagtaaaccg ccaagaatgg acattgaacg
     3121 gtttacaggg caatgcacaa gcggtcgatt ttgacttaaa ttttgcaatc cgcaaggttc
     3181 taagtggagc tgagcagcaa acggcgttag atctggccaa aagccttgca cgccgctcgc
     3241 cactcggaaa aacctaccca atgcagggta ttaccggcga gaaaaacgag atgattttcg
     3301 tggctcgccc acagattggg attagcaaag gtaatttggc ttcacaggtg caagccttga
     3361 ttgccattgt aacggtcggc agccaagcgg tggcagaaaa atcaagcgag ctggcaaaac
     3421 acgcctctgc ctttggtaag aaattacagg tggtggatga tttcaacagt ctcgatcacc
     3481 tcagcacact cattgtgctt gacctgcttt ctagtgagga aaaattgcat catgccgaac
     3541 gcaaaggggc gattttgacc tacatcgaag ggctggattt agcgctctca ctgctgccgt
     3601 tggtacacga gaaagcaatc agcatcaaca ccgctgccgc agggggaaat gccagcttaa
     3661 tgagtgaaat ggattaagca acaaacaaaa gagtataaga gggcagatca caatgatctg
     3721 cctttttatt ttaaggggct gtcctagata acgactaaaa cttccattta ggttaagata
     3781 accctatgag aaaaagtcgt ctaagtcagt acaaacaaca taaactcata gagctgtttg
     3841 tagcaggcgt aatcgctcga acagccgcag agttagtgaa tgtaaataaa accaccgcag
     3901 cctattattt tcaccgtttg cgattgctca tctatcaaca tagccctcat ttggaaatgt
     3961 ttgagggaga aattgagatt gatgagagct atttcggcgg tcatcgcaag ggtaaacgag
     4021 gtcgtggtgc agcaggcaaa accgccgtat tcgggctttt aaagcgtgac ggcaaggttt
     4081 ataccgtagt agtgccgaac acacaatctg ctacactttt gccgattatt cgggaaaagg
     4141 tgaagcccga tagccttgtt tacaccgatt tttatcgaag ctatgatgtg cttgatgtga
     4201 gtgaatttaa ccattttcgt atcaatcaca gcacacactt cgcagaaaat ca
//
LOCUS       DANLXB010000192         4236 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLXB010000192 DANLXB010000000
VERSION     DANLXB010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4236
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(3..1409)
                     /locus_tag="PXD41_002243"
     CDS             complement(3..1409)
                     /locus_tag="PXD41_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL6289732.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELTED
                     ELQMALFMIVMGAGSLGQ"
     gene            complement(1459..2265)
                     /gene="trpA"
                     /locus_tag="PXD41_002244"
     CDS             complement(1459..2265)
                     /gene="trpA"
                     /locus_tag="PXD41_002244"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL6289733.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            complement(2267..3457)
                     /gene="trpB"
                     /locus_tag="PXD41_002245"
     CDS             complement(2267..3457)
                     /gene="trpB"
                     /locus_tag="PXD41_002245"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL6289734.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            complement(3469..4221)
                     /locus_tag="PXD41_002246"
     CDS             complement(3469..4221)
                     /locus_tag="PXD41_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6289735.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
BASE COUNT         1165 a          990 c          754 g         1327 t
ORIGIN      
        1 gattattgcc cgagtgagcc tgctcccatc acaatcataa acagagccat ttgaagttca
       61 tcttcggtca gttcacgtcc gtttaaattc acttttccgt tatctatagt taattcaatc
      121 ttcacattgt tgtcatctac ttttcttaat ccgtactgtt caactcccgc attgagaaaa
      181 acagcatcaa cttgttgctt ggcaaatgct ttcgcctctt cttcgcctaa tttttctgta
      241 actattgaga cttggcgaat aatatcttcc gcatattgac ggttgatatt tgaagtgaat
      301 ttacttgttg aaagggcttg caataccgct tgcatattac caagattttg tgggtcaaat
      361 tgagccatat tcagtaataa agccaaatca actttgcctt tgctgttttc aagtgagaaa
      421 ttattaatat ggaatttaaa tgattttgct aatagttgta ataataactc gcctgttttt
      481 tcattttcta atgtttgagg attagataat aaaggcgtaa tatcattggt taatttagca
      541 tctaaatcgt atgccatatc catttttaat ttacccattt caacaccctc aatgttgaaa
      601 gtggctgcct ctaaatctcc ggtagaaatt aaacgatcgc cttttaatag attatcgccc
      661 ttcaccacaa catctttaat ttgagataat ttgccatctt tagacttaaa ctcaatagcg
      721 ttaatttttc cactaccttt gcctaaagtt aaattaggat aactttcatt attttctgtt
      781 tgaacatcat aaactatacc ttgaatttga aaatcaaatt cttctgcttt tatcttaaga
      841 ctttctagct caacagtgct atcaacccct tttaattttt ggtcgtagct atattgcact
      901 ttgattggcg tggtttcaat atgacctgtt tcatcactat gtttaatcgg ggaaatatca
      961 aaatgccctt ccacatcgcc cgaatagctg atattagaaa aaccggtgcc aatatgttca
     1021 cccatcaatt ttttaagggc ttcaggagct tgtaatttgc tttccgcact catcattaca
     1081 ggagctaaat taagtttcgc taaacgatta agcggtagcg gaccgtgatg aagtttatca
     1141 ttaccaacaa agtccaattt cttaccatta cccaaatcca cttctaaacg atatttcgca
     1201 ttagagataa agaaatggcg atcgatctgc acatctttaa gctcaatatt cgcaccaaat
     1261 tcgccactca gttgtttaag ttggttatta gcttgaacaa ccaattcttg atatttttct
     1321 tcaacctgct tacctgtgta ccaacttccg ccaactgcaa cagcaccaat taccgctaca
     1381 actgaaagaa caatttttgt taatttcatt ctgtttcctt ttattttcaa aaaaatttaa
     1441 aaaatgaccg cttgtagttt acttcgtagc cgctttcatc acttgtacaa attcggcaag
     1501 ttctttgagc aaattagctt ggtcagctaa attacgttca ataattttca caatcgctga
     1561 gcctgaaatc gccccgtctg ccccaagcct taacgcctct tttacctgtt caggtttggc
     1621 tatgccaaaa ccttgtaaga taggggcagc tccggcttgt tttaaacttt ccactaaatt
     1681 atccaaatta cttgcgtgag cttggttttc agcactagtt acaccggcac gggaaactaa
     1741 ataagtgtag ccttgggtta attgagcaat ccgttcaatg gtgttttgat cagcattcgg
     1801 cgggcaaata aacaccggct gaattccata tttttcagcg gttggcacaa actcttgagc
     1861 agcgaaaaca ggcaaatcag caatcaacac cgcatcaact ccactttgtt ggcaacgttg
     1921 gaaaaatact tctgcggttg gcacaaaaat taaattggca cacagtagta aaccgatagg
     1981 aatgtctgga tatttagctc gaattttggc aatcagctca aaacagctat cagtgctata
     2041 gccaccatct aaagctcgtt tattcgctgc ttgaatcacc ggcccgtcta agagggggtc
     2101 agaaaacgga aagcctagct ctaaagcatc agccccgttt ttaatcatcg tgtcgataat
     2161 ctcaaaactg cgttcaaaac caggatcgca taatgtcaca aacggcacaa aagccccttc
     2221 gttttttgct tttaatgcag taaatagcgt atcaaagcgg ctcattttac tctcctccat
     2281 ttaaaatttt atccacggtg aaaatgtctt tatcgcctcg acccgataaa ttcaccacta
     2341 ataactgctc tttttcaggg ttctgcttaa tcatttttaa cgcataggct aaggcgtggg
     2401 aagattctaa cgccggaata atcccctcat ttttggctaa tgcttggaat gcctctaaag
     2461 cctctgcatc ggtaatcgat acatattcag ctcgccctgt cgcatttaaa taagcgtgtt
     2521 gcggcccgac agaagggaaa tctaagccgg ctgaaatgga gtaagactct tcaatttgcc
     2581 cgtctttatc ctgcataatc ggcgatttca taccgaaata gatccccgtt gtgccgtgtt
     2641 tgagcggtgc accgtgttca ccggtttcaa ttccttttcc tgccggctca acaccgatca
     2701 atttgacgga ttgctcttcg ataaaatctg caaacatacc gatagcattt gagccaccgc
     2761 ctacggcagc aatcaccgca tcaggcaagc ggtcttcttt tgctaaaatt tgacgtttga
     2821 tctcttcgcc aatcattttc tgaaattcac gcaccattgt cgggaacggg tgcgggccgg
     2881 ctgcagtgcc gattaggtaa tgggtagtat cataatttgc cgcccaatcc cgcattgcct
     2941 cgcaacaggc atctttgagc gagcaagagc ctttttgtac cggaatcacc tccgctccca
     3001 ttaaacgcat acggaataca tttggcgatt ggcgttctac atcttttgcg cccatataca
     3061 ccacgcaagg cattcctaac atcgcacacg ctaatgcggt tgccacaccg tgctgtcctg
     3121 ctcctgtttc ggcaataatg cgggttttac ccattcgttt agcgagtaag atttgcccta
     3181 gcacttggtt ggttttatgt gccccaccgt gtaaaagatc ttcacgtttt aaatagagtt
     3241 tggttttact gcctttggtt aaattacgac aaagggttaa agcagtcggg cgaccggcat
     3301 agtttttgag taaatcggca aattcagctt ggaatgttgg gtcttgctga gcatctacaa
     3361 aggcttgttc taattctttt agcaccggca ctaaaatttc cggcacatac ataccaccaa
     3421 attcaccaaa ataaggatta agaagtgtgt ctgacataat atttcctttt aaatatttct
     3481 cgctacattt aaggcagaag aagtttgagc caccggcatc acttcaaccc gattaatatt
     3541 aacgtgttca ggttgctgat tcagccaaag cacaatattt gccacatctt ccgggcgcac
     3601 aaactgcacg ttttcataaa ctttagccgc tttttcatca tcgcctttaa agcgtacatt
     3661 tgaaaattcc gtaccgccac atagccccgg ctcaacattg gaaacacgca ctttagtgcc
     3721 ggctaaatct gcccgcaaat ttaggctaaa ctgtttcacg aaggctttag taccaccata
     3781 tacattaccg cccgggtaag ggtaagtgcc ggcaatcgag ccgatattaa taatatgccc
     3841 acttttccgc tccaccattt caggcaaaac taagcgtgtc atcgttacca atcctttaat
     3901 attggtatcg atcatttgat accaatcgtt caaatctgct ttctgtgccg gttctaagcc
     3961 gagtgcaagg cctgcattgt ttactaataa atcaatttgt tgccacgctt tagggcggct
     4021 attcagtgct ttttccacct catcgggctg ttgaatatca aatgcaagcg gtagaaattt
     4081 atcgccaaat tgtaaatgca gttcttctaa acgctctgcc cgtctgcccg tgccaattac
     4141 tttataaccc gattgaagca ataatttaca aattgccaac ccaaatccag cagttactcc
     4201 tgtgactaat gctattttca tcttttcacc ctcaaa
//
LOCUS       DANLXB010000193         4234 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLXB010000193 DANLXB010000000
VERSION     DANLXB010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(60..1505)
                     /locus_tag="PXD41_002247"
     CDS             complement(60..1505)
                     /locus_tag="PXD41_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289736.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRENGDSYAEYGVFTQSGK
                     EAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNESKLNG
                     KIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQLEEAV
                     GVVELENKAETFSENEVIKYNAVFGVSKAAK"
     gene            1690..4038
                     /locus_tag="PXD41_002248"
     CDS             1690..4038
                     /locus_tag="PXD41_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6289737.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
BASE COUNT         1185 a          839 c          900 g         1310 t
ORIGIN      
        1 tatccttaaa ataataaaaa taaaagggct taacagccct ttgtaagata caaaaaatac
       61 tatttcgccg ctttgcttac gccaaatacc gcattgtatt taatgacttc attttcagag
      121 aatgtctcgg ctttgttttc taattcaaca acgcctaccg cctcttcaag ctgaggcccg
      181 gtaaaatcga cagcgtaatc acccacaaga ttctctttat tctcaactat gacttcttct
      241 ccaaaaccaa tatttgagcg gagtgcggta gggttagcta tttcactttc tttaagtgta
      301 attaccccaa cactttggct atcaattttg ccgtttagtt tactttcatt ccattctttg
      361 gaaaggtgta aatttaatgt aacatcacca tcaaattgag gaatacctgc gacttgttcc
      421 ccatttacct gacgaataac gcgagcaata gcttgacctt tgtaagtggc atcaccaatc
      481 aggttatcat tccatttagc ttcttttcct gattgtgtga atacaccata ttcggcataa
      541 ctatctccat tttctctacc agcggtcaga cgaacgttga ataaatggct gtctttttgg
      601 tccgtaaata aagcaccata gctcgaataa ggttgattta catagagata gttaattttt
      661 ttagtattac cttctaaatt cgcatcttca tacacgccac tatgaatacc taaatgttta
      721 tccccttttt gatttaagtt cttaaaataa gaatctttat ctccggcacc aagcccaaaa
      781 acaagtgtat tattgtattc tttttcagta tcgctactga caaatggtga attttcaaca
      841 gattcatccg taaaagagtc gaaatctact ttttgcatag cacttgcatt tactacgctt
      901 tttctcggat ttaggtttat tactcggtac gggctacctt tactatctgt atctataggc
      961 tttgccccgt caaaattaat gttaggagta ttattgcttg agtcctcttt attctccttt
     1021 ttacttttct cagcttcttt atctttattt actgtttctg ttggggcatt tggtttattg
     1081 ccttcagtga ctttgtcatt attatcgcta tcgctttctt tggggttagg tttattactg
     1141 tcgttttcct tattctcgat aggattaggc accattttat ccggctgtac tgatgagtta
     1201 tcgatttttt cagtagcagg tggtgtatat tctttatctt ttttacttgg tttatttgtc
     1261 tccgcatcag gttttactgg gtcttttgcg ttagcaggtt tatccggttg aggatcggat
     1321 ttatttggtt gcgcagactt tttctctttg ttatcggttt tctctttatc gttgccatca
     1381 gtagctgtta tttccttagg tggagggctg tctgcaacaa tagatggacc ttggctagat
     1441 ttacagccac ttaaaacaat agaaacagct aaagctgcaa gagtaagttt gaatgtagaa
     1501 cgcatatttt gtctccgtca gattaaatcc ataaaatttt aatggatata tttcctgttt
     1561 ggcaataggg aaaatttaaa aaatataatt tttttatggt tattattgta aagactcata
     1621 ttttgcagta ccttattatc cttaattttt ttaaggagaa agattgtgtt taagaaaaca
     1681 ggattggcat tgctgatttc ggctcaattt agcccgcttg tttgggcgga aaataacgat
     1741 gtagcggtgt tagatgaagt ttcggtcgtt ggcagcactc caagtatatc gcaggggagt
     1801 gaagttacct tgctaaaagt cagtgataaa attattgcag gtaaggaatt taaaaagcgt
     1861 tcggcaacgc tgggtaatgc gttggcgtca gaattaggcg tgcatagtaa cccgtttggt
     1921 ggcggagcga gtaagccgat tattcgtggg caggaagggg cgagaattcg cattttgcaa
     1981 aacggttcag acgtgattga tatgtcgaac ctatctcctg atcacgccgt tgttgctgat
     2041 tcactgcttg ccgatcaggt tgaaatcttg cgtggttcca gcaccttgct ttatgccagc
     2101 agttcgccgg taggaattgt aaatgtggtg gataaacgta ttccgaccgc tattcctgaa
     2161 aagggatatg aggttgaact caatagccgt tttgataccg ccgccaaaga gaaagtcggc
     2221 gcattagggg caacctttgg catcggtaac cacattgcgg tgcgagtcga agggctgagt
     2281 cgtcatagtg ataactaccg tgtgccgggg atcaacttag gcgagcgctt aaactatgtg
     2341 ccggacactt acaataaatc caaagtcggc acgttgggct tatcctttgt cggtgaacga
     2401 ggctatattg gtgcctcata cagcaaacgg cgggataatt atggcttgcc ggggcataac
     2461 cataaatttg atttctgtac cggtcatatc tacggtaata agcgggataa atacgcttat
     2521 acctatctct atccgcattt gattggtgag gaaaatattg ggagcaatcc gcacttccac
     2581 tgtggaacca accacgccga ggacggcaca cacagccacg ataacccgtt cggacacgcc
     2641 cacgatcaca ctcacaaagg cccgtgggtg gatttagaat caaaacggat tgatgtgaaa
     2701 gccgagctac gccagccgtt taagggcgta gataaaatta aggcaagcta tgctgatgcc
     2761 gattattacc acgatgaaaa agatgcaggc gtgcttgcca cccgttacca taaacagctg
     2821 aaaaaagatc aggattacgg caagccggtg aatattttca aaaatcgggg caaaaatacc
     2881 cgcttggagg tctatcacgc accgctaggt ggcttaaccg gtgtatgggg tgttcagtat
     2941 caaacgcaaa aaagcagtat gaatgcgccg aaagatcgcg aagtgaaatt cccgctggtt
     3001 gaaaatacca ataaacagtt cagcctgttt ggggttgagc agtatatgtg ggatagcgtt
     3061 gctgttgagc ttgccggacg aatggaaaag cagaagattg agattgagta tgatcgcaat
     3121 gaaatcaaac ggttacaaga acactaccgt atcagtggcg gcaaacaggt tgagccagat
     3181 ctttcaccct atgatgaaac ggcttatgcc tattccggca cgcttaactg gttcttccac
     3241 cctgactatc agctttcgtt tactgcctcg cacaatgaac gcttgccaac gccaatggag
     3301 ctgtattatc acgggcagca tattgctact aattcgtttg aatacggcaa taaagacttg
     3361 aaaaaagagc agtcaaataa tgtggagttg ggcttgggct atcaagctga acgtattggc
     3421 tataaagtga gtgtttatta caatcacttt aaaaactaca tctacaatga aaatcttttc
     3481 cgtgaaaatc agctatttat gcgccgttat aatcaggcaa aagcccgttt ttacggggta
     3541 gaagcagagg caagctaccg ctttaacgac caataccaag ccacgatttt cggcgatatg
     3601 gtacgaggct ggctaacaaa tttaccacca ttgaagataa atagcgatta tagtgtgttc
     3661 aaagattatc tgccggaaaa tgtggaaaaa gggaaagatt atcttctata tcgggctgac
     3721 caaaacaccc ctcgtacacc gccaatgcgt ttaggttttc gctttaatgc ggaatttacc
     3781 ccaaattggt cgggggattt agagctgatc cgcaccttta cccaacgccg tacgagccag
     3841 ttggaatata ttaccgaagg taatacgatg ttgaatgtcg ggttgtcgta tagcaataag
     3901 tggaaagagc tggattacaa aatcagtcta aacggcacaa acttactgaa tcagccggtg
     3961 tatatccaca cttcgtatca ccaatttgta ccacaaatgg gacgaaattt tatgttggga
     4021 atggagatga aattttaagt tctcgacata acaagacaag cggttatttt ttcttcaaat
     4081 tttgcaaaaa aacggctaaa aataaccgct tgtttaaaac tcaggtattg gtaatttgga
     4141 taaaatagtg ctgtttttcc tttcttgtta ttttcggagc ttaccaaaat ttcctgtttg
     4201 ttgttaaata agacaattaa ctttatccct ttat
//
LOCUS       DANLXB010000194         4225 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLXB010000194 DANLXB010000000
VERSION     DANLXB010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            57..2147
                     /locus_tag="PXD41_002249"
     CDS             57..2147
                     /locus_tag="PXD41_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL6289738.1"
                     /translation="MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQ
                     IIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDT
                     TCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YTDRVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDD
                     RNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLN
                     QRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGK
                     ADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQIL
                     LSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            2170..3402
                     /locus_tag="PXD41_002250"
     CDS             2170..3402
                     /locus_tag="PXD41_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6289739.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3483..>4225
                     /locus_tag="PXD41_002251"
     CDS             3483..>4225
                     /locus_tag="PXD41_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6289740.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKA"
BASE COUNT         1353 a          666 c          854 g         1352 t
ORIGIN      
        1 tatcatgtta tctgctatgg tacaatacat aaatacgaat atgagattaa ttttttatgc
       61 ttagctattt agtgtttttt agtaaaatta taaaaatccc taatttaaaa ggttttttac
      121 ctcattgtga aattaggcga agacctcttg tgggaaaaac ctttattgct caaaaaagac
      181 cgaaccaaat catcggctgg gggcttcgtc cttcagcggt gggatcaaga gcttatgcac
      241 aaaaacatca acttccctat attgcattag aagacggctt tttacgctca ctagggctgg
      301 gtgtaaaagg ctatccgcca ttttctttag tttatgatga tataggtatt tattacgata
      361 ccacctgtcc ttctcgttta gaaaagttat tgcttgaaaa acctttacag gatcaagagc
      421 aaatcaagct tgcagagaga gcattatctc aaatcttaac ttacggactt tctaaatata
      481 atcacgcact agattttagt gaaatcccct ctgccaaaga aaaaatcgtg ttagttattg
      541 accaaacctt tggtgatatg gcggtgaaat atggtcaagc gagtgaagtg gatttcaata
      601 aaatgttgga aacggcaatc agtgagaatc cagaggctca aatttgggta aaaactcacc
      661 ccgatgtatt aagtggcaag aagaaaggct atttgaccga tttacctcaa tatactgata
      721 gggtcagaat tattactgaa gatgtgaatc cggcaagttt gattaaattg tgtgagaaag
      781 tctattgcgt aacttcgcaa atggggtttg aggcattatt attaggtaaa aaagtggtta
      841 cctttggtgt accgtggttt gccggttggg gggtaacaga tgatcgtaac gaagcggttc
      901 aactattagt tcaacaaaat agacggaaag atcgttcatt actgcaactt ttttatgctg
      961 cgtattttga ttacagccgt tatattaatc cgaataccgg tgagaaaggc tctatttttg
     1021 atgtcatcga ttatctatat aaagccaaaa gattaaatca gcgcttaagt gggaatctat
     1081 actgtattgg tatgtcgcta tggaaacagg cggtaattaa gccgtttttt aatttgccac
     1141 aatgtcgatt acattttgtt cgttcgctaa attctttaaa aaaacgaccg cttgcagata
     1201 atgcaaaaat tttagtttgg agcaatggca aagcggatgt cttgcaattt gcacagcaga
     1261 ataatattcc attgttaaga atggaagatg gattcattcg ctctgtcgga ctaggcgcta
     1321 atttagttgc accgctttct ttagtagtcg atgatttagg catttatttt aatgcagaga
     1381 acacttcacg attagaacaa attttattga gtgcagagca tttttctgaa actgatttgt
     1441 cttatgctga aacattaagg cagaaattgg tggctagcca tattggaaaa tataatgtgg
     1501 gcggtggcga tgtaaaattt aatgctcaag gtaaaaaaat aattcttgta ccggggcagg
     1561 tagaagatga cgcttcgatc aaatcaggtt ctccacaaat taaaagaaat ctggatttac
     1621 tgaaaaaagt gagggaatta aaccctagtg cctatattat ttataagcct caccctgatg
     1681 tggtaagtgg taatcgagtc ggtcagattc ctacggcaga aacacgcagg tttgcggatc
     1741 agatggtgga taatgccaat attttagatt gtattttaat tgcagatgaa gtgcatacaa
     1801 tgacatcttt agccggtttc gaagcattat taagaggtaa aaaagtgcat tgctacggat
     1861 taccttttta tgctggttgg ggattgacgg aagatagatt gaagtcggca cgcagaggta
     1921 aatctttgac attatctcag ttaattgccg caacattgat atattaccct ctgtatgttg
     1981 atcctataag caggcagttt attgatgcca atcaagcgat tcatatattg tcacaacaga
     2041 aacgaaacct aaccaatcaa aggattaaac gttcttgggt gagtaaacaa tatggaaaat
     2101 tacagcatct ttatcgtgcg tttaaatatg cttcccacac taaataagcg tagagggtag
     2161 gaaattaaga tggaacatta tttagatgag ctaatcatca atagccagag aattttattg
     2221 ttacaaggcc cgataggctc ttttttcact gagtttgccc gttggttaga aagtgagcaa
     2281 aaagaggtct tcaagttaaa ttttaatggc ggagatgaat atttctatcc aaataatagc
     2341 ccgaatactt ttccttacta tgatagctta gataattttg aagcctattt aattcagttt
     2401 tgccaaactc atcaaataga taatatctta tgttttggcg ataatcgtta ttatcataaa
     2461 gtggctaaaa acgtttgctt gaagttaaag ttggtctttt gggcgtttga agaagggtac
     2521 tttaggccag aatatattac gttggaaaaa tggggtgtaa atgctttttc tccaatccct
     2581 aaaaatcaca ctttcttttt gccttatgcc gagttaccag tagtcagtga accagaaaaa
     2641 gtatctaaag gctttagatg tatggcggga aaagcaatcc cgtactattg gaatgcctat
     2701 aaaaaacgta aagcatacgc aaaatatcag catcatcgtt ttctgaatct caaatactac
     2761 cttaatttat ggacaaggtc gggaattaag cgaatatgtt attggttaca tgataaaggc
     2821 tttgccaagc gggtagaaaa aggagagttt ggtgaatttt tcattgtgcc tctacaagtt
     2881 tatgatgaca ctcaagtgag gattcatagt gaacaaaaaa gtgtagagcg ttttttaagg
     2941 gaagttctga attcctttgc caaatttgca ccggcacatc tcaatttaat tattaagcat
     3001 cacccgatgg atagaggatt tatagattat aaaatggtga tttatgaatt cttagagcaa
     3061 tatccccaat taaacggtag agttttttat attcacgatg tgccgttacc tgtcttttta
     3121 cgttatggga aaggaatggt gactttaaat tcaaccagtg ggctttctgc attgctccat
     3181 aatatgccgg tcaaaacctt aggtagagcc aattatgatt ttgagggatt aaccgataaa
     3241 cagccattag atactttttg ggctaatcct cagccaccta attcggaagt atttaaaggc
     3301 tacagacaat ttcatttaca taaaacgcat attaacggta atttttacca taaatcgatt
     3361 ttgcgttatc cttataattg ggaaaatgaa gcacacaggt gatggaaaat attaaaataa
     3421 gtaatatctt atagctaaat tattgtgtta ttattacacc tattgttaaa agagggggca
     3481 ttatggctat ttatgcaata tggaataata aaggtggggt tggtaaaagt tatttaactt
     3541 ttcaaatcgc ttgtgagtat gcaaaacaat acccagcaaa aaaagttctc gttgttgatt
     3601 tatgtcctca agcaaattca tcatctatgc tattaggcgg cattgaaaaa ggtgagcaag
     3661 agttagcaaa aattcattct caagtaaaca agaatactat ttcaggatat atttcagaaa
     3721 gattagtaag tccttaccgt tctattaata gtgcaacgaa atatgtaact caagttagca
     3781 ctataaatga atatgtacca aaaaatgttt atcttgttgt tggtgatgag gaattagaaa
     3841 tccaatcatc tggtatttta catgcttccc aagctgttca tgttcctgat tcttggcggc
     3901 tagtgcatct ttgggtgcgt gatttagttt ctgatataca gaacgcttgg gataatgatg
     3961 ataacgttgt atttattgat tgcaatccaa gtttcactat ttatactgaa ttagcgttgg
     4021 ctgcttcaga tagattgatc atcccttttt ccgctgatgg ttcatcaaaa cgagctgtta
     4081 agtctgtatt atctctagta tatggggtta aaaggcactc tggggatgtc agctctcatt
     4141 tttatacaga atctcaaaag agtaagttag cattacctca aatttatatg tatgtaggta
     4201 atagattaac gataaatgcc aaagc
//
LOCUS       DANLXB010000195         4209 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLXB010000195 DANLXB010000000
VERSION     DANLXB010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4209
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..420
                     /locus_tag="PXD41_002252"
     CDS             <1..420
                     /locus_tag="PXD41_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289741.1"
                     /translation="RQLISAKHPETKKRISLHLKILDFDKGRNTYLAPADLFILDEHL
                     NEFILGNGGDEIEKISKNNKTQFSSTIRENQINFIRALLYMDYGIETPQEVKNAINSG
                     ELGRKIEKFRRENPNIENDKNFKFPTSVTLSNWYSKA"
     gene            498..749
                     /locus_tag="PXD41_002253"
     CDS             498..749
                     /locus_tag="PXD41_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6289742.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            749..1129
                     /locus_tag="PXD41_002254"
     CDS             749..1129
                     /locus_tag="PXD41_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6289743.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1440..2501
                     /locus_tag="PXD41_002255"
     CDS             1440..2501
                     /locus_tag="PXD41_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL6289744.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2494..2658
                     /locus_tag="PXD41_002256"
     CDS             2494..2658
                     /locus_tag="PXD41_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289745.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2651..3286
                     /locus_tag="PXD41_002257"
     CDS             2651..3286
                     /locus_tag="PXD41_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289746.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3280..3498
                     /locus_tag="PXD41_002258"
     CDS             3280..3498
                     /locus_tag="PXD41_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289747.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3640..4125
                     /locus_tag="PXD41_002259"
     CDS             3640..4125
                     /locus_tag="PXD41_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289748.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1540 a          869 c          795 g         1005 t
ORIGIN      
        1 agacaattaa tatcagcaaa gcacccagaa acaaaaaaaa gaataagttt acatctaaaa
       61 atactggatt ttgacaaagg cagaaatact tatttagcac ctgcagattt atttattctt
      121 gatgaacatc taaatgagtt catattaggt aacggcggag atgaaataga aaaaatatca
      181 aagaataaca aaactcaatt cagctcaaca atacgagaaa accaaatcaa ttttattaga
      241 gccttgcttt atatggatta tgggatagaa acgcctcaag aagtaaaaaa cgccattaat
      301 tcaggggaac taggcagaaa aatagagaaa tttaggagag aaaaccccaa tatagagaac
      361 gataaaaatt tcaaattccc tacaagtgta acccttagca actggtattc aaaagcctaa
      421 aatattggaa atttccgaat ctactttgga aatttccaaa cttctaaaac ctactcacct
      481 cacaatctcc cccaacaatg caactacaaa agacaataag cacattcacg caaccaaacc
      541 acagggggat ttatgtaatg acctattcag aacaaagcta tttaaacgtg aaagatgtat
      601 gcgaaatgct acaactcaac cgctcaacta tttatcgaca aattaagcaa gggattttcc
      661 ctaagccaac taagatcgga aaatcaagcc ggtggaaatt tgccgacatc aaagcatttt
      721 tagagccaaa accacaggag gcgaactaat ggcagggctt tctattattt gcccgttttg
      781 tggcaatacc gcacgaatta gaggcagttc tcgccctagc cttttaagtt atcaagcaca
      841 gctaacttgt tcaaattgcg gacaattaaa agccgacttt gtagggcagc taatcaacat
      901 caaacgggcc gtatttattg agtgtgatga agcaaatcaa tgggataaac ccgaaaatga
      961 actaatcaag gagggaaaaa ttcaaggcaa agacaatgct caacgcctca aagaactaag
     1021 aggctcacag caagatttat ttgcaaaggt gccggggcaa ctaccgcccg agaagatcac
     1081 tccggcggag aaaatcgcca agcgggcaaa cctttcaaaa acgcattaaa cagggggata
     1141 aatggcaaca aaaaagcccc gcaaggcaaa ccatacggag ctattaaaat cgcataatgc
     1201 gaaagatatg caaagaaatt aaagcaggct tgacgatttc tgaaggtgtt agattctttc
     1261 taaagtcttt agggataggt ttatttctag cattgttttt ttattttttg ccgtatttag
     1321 cagaatttat aatcgccgta aaaaaacaac tagcaaaaaa atcggcttac tttcaatgat
     1381 aaaagcaagc cgaaatgaca atccaaattt ttaactttaa ataaagagta caagaagaaa
     1441 tgaaagattt atctccaaat cagaaacaat atacgccatt ttcggctata atgcaaaaaa
     1501 atttaatgga tttattgaca aaatccgccc gttcgcctta ttctttctct accgttgcaa
     1561 aatcaacggc agggcgtgag aaccctgaac tacataatac ggcgaacagt agcacgcctt
     1621 taacccgtgc tatttttatt cgtagcttac acacacctaa agaacgccga aataaggcgt
     1681 gttcgtctat ggtagcgtgt agcgggcaag gttcgccctt ggctgttttt ggttcgccgt
     1741 ttgtagcagt tttctcaccc cgttacacgc tatcgccctg caccgtgaga agtgtagccg
     1801 atagtccttt aaaattaaca aacggactac aaaaaatgaa ccctagccaa attacaggca
     1861 aaaaccgcct aaactctttt ctatttaaca ataatcaaaa tgattattcg ctattattta
     1921 ctaatgcaaa acaatcaacc ccgatttctg ctaaaataag caaaaatcaa gatttatgct
     1981 tgacaaccct caatcgttcg ccttatgcta gccgtgcttt tgcaaaatca aaagccgagt
     2041 gtggaaactc gaaagaacat caggcgaaca atagcacgcc tttaactcgt gctttttttg
     2101 ttcgtagctc acgcacaccc aaagaatgcc aaaataaggc gtgttcgtct atggtagcgt
     2161 gtagcgggca aggtttcgcc cttgactgct tacctgatgt tgcagttttc caccccgtta
     2221 cacgctatcg ccctacattg tggaaaatgt tagcgatagc ccctaaaaat caacatcagg
     2281 agctatcaaa aatgaaagca ttcgcttatt cattcctttg tgctattcgc acacccgaaa
     2341 cagatactta tcaagaaacc gtagtacgca ttatttcaga cagcgaacaa aacgcccgtt
     2401 ttcagcttac agccgattat cgcttactac tcccccgccc tgttgcaaaa atccgcctaa
     2461 attctaccgc ttacacggtg aaagggggga tttatgctta attattccga tattgaacaa
     2521 atccgctatt ttatggatca agccgaagag gctttagaca ataatgaaga gttcaaagcc
     2581 gtagcagaac ttaacacagc acaacaattt attctggctt tattaatgaa ctacgaacaa
     2641 gggggtgaaa atgaataata caacaggaca agctacgcaa agaaactggc aagaaattat
     2701 cgctaatttg cagagactca gcgaatccgg ggaaagcaca atcgaaatcg ctaaacgcta
     2761 tgaggcattt tctaaaaccg ccgagcaaat ccaagcccta gtgaataaca acggcagcga
     2821 agccgaaaaa gaggcgtttt ttgcccctgt tgagcgtttt tatcttggct tactagaaac
     2881 cgaaacacgc ttaaaagatg ccatagccaa agacgaagaa aacgcccaaa aattgaaaga
     2941 gcaaaaagca gctagagagg cagagcaaaa aagatgggac aacctacctt tctacgccaa
     3001 agacaaattc agtgatttaa tttgcattga aagccgagaa acgcttgaag ataaattctt
     3061 tgcgatctct tgtatgttcg atgccctaaa agccgtacct aatctattag aaataggctt
     3121 gcgtgaagaa ggcaaagaca gtgttataga ccgattagcc gaaatgagca aactctattt
     3181 actgtttgta gatgagcaat tttcactact ggcaaacgaa attcaaagcg gtaaatatgg
     3241 caagttagac ctaaacggct cacagaataa gggggattta tgctaacgca ccgcattaca
     3301 ctccctgacg gcacagaaat tgaatttttt gcagaaaccg acaaagaaac atttgcagaa
     3361 attcaaaggg acttagaggg cttgaaattg ccaacctttg ccgagtttgt tgcccaagag
     3421 cggaaaaaac accgagcaaa acaagcggtc aaaaaagccc gaaaaattgc aaaattagca
     3481 agacggaaaa accgctagca cctatcaaaa agacttatta ttgcagaaaa tcacgcttta
     3541 ataaaaacga cctataaagc aatccgcaag aaatggttaa gtttaactga aaatatgagc
     3601 ggacaggttc agcgggtagc gtgcgataga ttcgcaataa tggaaaccgc cttgcagtta
     3661 gcccaacatt taacaggctg gacagaggaa gagaacagcc aagcgatttt aaaaaacttc
     3721 ctagactgga aagaaacttt cggcgaaaaa acaagagaag aaactaaaat agtagaaacc
     3781 ttgctagatt ggataaatga aaatgaggcg agttttatcg agtacccatt caaccaagag
     3841 caaagaacac cgcctaaagt tgccggctat agaatacttg cgaataacag cactaaaaca
     3901 aatgagtact ttttcattta ccctaagcaa tttaaagaaa cgctggcaga atttccgcta
     3961 ttgatggctt gcaccaagtt acacgaggca gggattttac ataagccacc acgcccagaa
     4021 aaaggctatg aatttcagta cacaatagcc cctaaaataa caggagggag caaaaaaaga
     4081 gcttataaaa tcgtaccgat agcattggaa gaagaaaacg agtaattaca gcaaaagcaa
     4141 gagtttcaat tcttgctttt tttatacttc aaacaaaata aaaataaata caaattaaaa
     4201 atttatagg
//
LOCUS       DANLXB010000196         4180 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLXB010000196 DANLXB010000000
VERSION     DANLXB010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4180
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            3..1211
                     /locus_tag="PXD41_002260"
     CDS             3..1211
                     /locus_tag="PXD41_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL6289749.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1264..3399
                     /gene="pta"
                     /locus_tag="PXD41_002261"
     CDS             1264..3399
                     /gene="pta"
                     /locus_tag="PXD41_002261"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL6289750.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3513..>4180
                     /gene="can"
                     /locus_tag="PXD41_002262"
     CDS             3513..>4180
                     /gene="can"
                     /locus_tag="PXD41_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL6289751.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVL"
BASE COUNT         1302 a          781 c          859 g         1238 t
ORIGIN      
        1 ccatgtctaa aaacttaatc ttaatcctta actgcggtag ttcatctctt aaatttgcta
       61 ttttagatcc taaaacaggt gatgaaaaat tatctggact tgctgaagct tttcatttag
      121 aagatgcacg tatcaagtgg aagttaaacg gggagaaagg taatgctgat ttaggtgcag
      181 gtgccgcaca tagtgaagca cttaccttta ttgctgaaaa attgttatct gacgaattaa
      241 aagcaggtat cggcgcgatt ggtcatcgta ttgttcatgg cggtgaaaaa ttcacctcat
      301 cagttgtaat taccgatgaa gtgattaaag gtattgaaga tgcaacgcaa tttgcaccat
      361 tacacaaccc tgcgcattta attggtatta aagaagcatt ccgcattttc cctgaattaa
      421 aagacaaaaa cgtagctgta tttgacactg cattccatca gacaatgccg gaacacgcat
      481 tcttatatgc acttccatat acattctata aagaaaatgg tattcgtcgc tacggtttcc
      541 atggcacaag ccacttctat atcacctcac aagttgcaga attagcaggt aagtctgttg
      601 agcaaaccaa tgccattatt tgccacttag gtaacggtgg ttctgtttct gttgtacgca
      661 atggtaaatg tattgatacc tcaatgggtt taactccatt agaaggttta gtaatgggta
      721 ctcgctctgg tgacttagac cctgcgatta tctctttctt atacaataac ttaggtatgt
      781 caatggacga aattgatact actctagtaa aaaaatctgg tcttttaggt ttaactggcg
      841 taactagtga ctgtcgttat gcggaagata attacaatga cgtatcaaaa ccggaagcaa
      901 aacgtgcttt agatgtatat agctatcgtt tagctaaata tattggttca tatatggcaa
      961 ttttaggcga tgaccactta gatgctatcg catttacagg tggtatcggt gaaaattcag
     1021 gcttagtacg tgaattaacc ttaaatcact taaaattatt tggcattaag ttagatcaag
     1081 agcgtaacct tgctgcccgt tttggtaaag atggagtcat tacagcggac gagtcaacat
     1141 ttaaagctgt tgttatccca actaatgaag aactcgtgat tgcacaagat accgctaaat
     1201 tagcattata atcatagggg gcagatattc tgccctttca ctttctttta atttggaaat
     1261 attatgtcta gaacgatcat tcttatccct atttcaactg gtgttggttt aaccagtgtt
     1321 agcttaggtt tagtacatgc tttggagcaa aaaggttcta aagtaggatt tttaaaaccg
     1381 atttctcaac ctatcagcgg tgaagatacg ttagaccgct caacaacgat tatcagagca
     1441 gaacaaacaa cagaggttgg tgagccgttt atgttaagcg aagctgaaac attaatcggt
     1501 caaaaccaaa cggatgtatt gttagaaaaa gtggtggaac gccaccaaaa attatcaaaa
     1561 aataatgaaa ttgtcattgt tgaaggttta attccaacgc gtaaaaactc atacgctaac
     1621 agcattaact atgaaatggc tcaagccctt gatgctgaaa ttgtattagt tgcagcaccg
     1681 gcctcagata caccagctca attaaaagag cgagttgaag ctgccgcttc acaatttggt
     1741 ggacgtaaca acccaaattt actgggcgtt attatcaata aattcaatgc accagtagat
     1801 gattcaggta gaacccgtcc agatttgact gaaatttttg attcatttca acactcaaat
     1861 aataatgttt cagaagtcga gcatcttttt gctaaaagtc caattaagct gttaggctgt
     1921 attagctgga aagcagaact tattgctaca cgagcaattg atgttgcaaa acatttaggc
     1981 gcttcaatta ttaatgaagg cgaaataaag gctcgtcgga ttcgcggtgt gacattctgt
     2041 gcacgtaact taccaaatat ggtcgatcat tttaaagccg gtagtttatt agttacctct
     2101 gcggatcgtc ctgaagtgtt agttgctgca tcgttggcgg taatgaatgg catcgaaatt
     2161 ggtgctattt tactaaccgg tggttataaa attgatagct caattgcaaa actttgccaa
     2221 caagcatttg aaaccggtgt gcctgtattc cgtattgaag gtaacacttg gcaaaccgca
     2281 ttaagcctac aaagcttcag cttagaagtg cctgtagatg ataaagagcg tattgctgca
     2341 attaaagaat atatggcaag caaatttaat gtaggtttca ttgatgaggt ttctaaagcc
     2401 gctactcgtg caagacgttt atcacctgca gcattccgtt accaattaac cgaatatgcc
     2461 cgtcaagcga aaaaacgcat tgttttacct gaaggagatg agcctcgtac tgtgaaagcg
     2521 gctgcattat gtgctgagcg tggcattgca gaatgtgtgt tattagctaa cccaacagac
     2581 gtacaacgtg ttgctgaagc acaaggcgtg gtattaggta aaggcgtaac gattattgac
     2641 cctgcgagca ttcgtgaaaa ttatgttgat cgcttagttg aattgcgtaa agcaaaagga
     2701 atgactgaag ttgttgctcg tgagcaactt ttagatacag ttgtattggg tacaatgatg
     2761 cttgaagcta atgaagtgga cggtttagtc tcaggcgcag ttcacacaac cgctaacact
     2821 attcgcccac caatgcagat cattaaaact gcaccgggaa gctctattgt atcttctatc
     2881 ttctttatgc tactacctga tcaagtattg gtatatggtg actgtgcggt aaaccctgac
     2941 ccaactgcag aacagctagc ggaaattgcg attcaatcag cagaatctgc caaagccttt
     3001 ggtattgacc ctcgtgttgc aatgatctcc tactctaccg gtacatcagg ttcaggtgcg
     3061 gatgtagaaa aagtgaaaga agcaactcgt attgcccaag aaaaacgtcc agatttaatc
     3121 attgatggcc cattacaata tgatgcggcg attatggaag atgttgcccg ctcaaaagca
     3181 ccaaattcac ctgtagcagg taaagcaact gtatttgtct tcccggattt aaatactggt
     3241 aataccacct ataaagcggt acaacgttcg gcagatttag tctctatcgg cccaatgtta
     3301 caaggtatgc gtaaacctgt aaatgacttg tcccgtgggg ctttagttga cgacatcgtt
     3361 tatactattg cgttaactgc gattcaagca acgcaataat tccctcccaa atgaaaccaa
     3421 atgcccttaa aactaagggc atttttattt tttacctacc cgacttttca atttaatcat
     3481 ataatcaaga ttagtgttaa aaaggagaat ttatggaaaa aattgaacgc ttatttgcca
     3541 ataaccacgc ctgggcaact aagatgaaag atgaacaatc ggattatttt aaagaattag
     3601 cggaacatca aaagccaacc tatttatgga ttggctgttc cgatagtcgt gtgcctgctg
     3661 aaaaactcac agggttaggc cccggagaat tatttgttca tcgaaatgta gcaaatatgg
     3721 tgattcacac tgatcttaat tgtctgtcgg ttgttcaata tgcggtagat gtattagaaa
     3781 ttgagcatat tattatctgt ggtcacacta attgtggtgg tatcaatgcg gcaattgcac
     3841 aaaaagaact tggtttaatt aataactggt tgttacatat tcgtgatatc tggtttaaac
     3901 acagccattt actaggcaaa cttccctatg aagagcgatc aaatgtcttg acccgattaa
     3961 atgttgcaga acaagtttat aatttaggtc agtcctctat tattaaaacc gcttgggaac
     4021 agggtaaatc cctctcgcta cacggttggg tatacgatgt tacagatggt ttcttgattg
     4081 accaaggtgt tatggctact agccgagaaa cattagaaat tacctatcgt aatgcaatag
     4141 ctaaaataac aaccgaagca aacgaaaaaa tagttttaaa
//
LOCUS       DANLXB010000197         4167 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLXB010000197 DANLXB010000000
VERSION     DANLXB010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            2..1870
                     /locus_tag="PXD41_002263"
     CDS             2..1870
                     /locus_tag="PXD41_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL6289752.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(2030..2926)
                     /gene="malM"
                     /locus_tag="PXD41_002264"
     CDS             complement(2030..2926)
                     /gene="malM"
                     /locus_tag="PXD41_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL6289753.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3007..>4167)
                     /locus_tag="PXD41_002265"
     CDS             complement(3007..>4167)
                     /locus_tag="PXD41_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL6289754.1"
                     /translation="FTVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAY
                     GGTLHNNDWTPTSPALRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDIS
                     GPGAGVENIDLGFGKLSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADV
                     YNDIFDVRLAGIELWKDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFF
                     GGFNKFTAQYATDSMTSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYE
                     KTKLDNKQGKTWYSAGIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQW
                     QAGNSIWARPAIRVFGTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
BASE COUNT         1132 a          853 c          850 g         1332 t
ORIGIN      
        1 tatgtcagga ttagttagtc cggaattaat taaaacagtc gcattacttg caaccagcgt
       61 cactattgta ccgctattta aacgccttgg tttaggaagc gtattgggtt atttagtcgc
      121 aggatgttta atcgggccat cgggcattgg attgttccaa gaccctgccg ctgttgtgca
      181 tatggcagaa cttggcgtgg ttatgttttt gtttattatt ggtttggaaa tgcacccgga
      241 actgctttgg gcgatgcgta aagccatctt cgggcgaggt ttcttacaag ttgcgatttg
      301 cggtacttta ttaaccttag ccggcattta cttattaggt ttttccaaag aagtggcatt
      361 tattgccggt atgggtttta cgctatcttc tactgccatt gtaatgcaag tgctggaaga
      421 taaagggata agttccacgc caaaagggca acgtattgtt gcaactttac tatttgaaga
      481 tttagcgatt gtgccattat tagcctcggt tgcctttctt gctcctaacc aagtagatgc
      541 tgaatccagt actaattggt ctgctattgg tcttagccta gttgccgttc ttattttggt
      601 tgcgagtgga aaatggctga tgaaccctat tttccgtgtt atttctaaag ccaaagtacg
      661 agaaatgatg actgccgctg ccttacttgt ggtattaggc tccgctcttt taatggaaat
      721 cagtgggctt tcaatggcaa tgggggcatt ccttgccgga gtaatgcttt cggagtcttc
      781 tttccgccat caactagaag ctgatattga acccttccgt ggtttacttt taggcttatt
      841 ctttatgggc gtaggaatgt cattagacct cagcctcgtc ctcaataatt ggctatggtt
      901 attggtgatt gtagcagttt atgttatcgg taaaggcctt ggaatcttca ttgctgcctc
      961 tatcacccga ttaacactga atgaatctat tgtgcgaact accattatgg ctcacggtgg
     1021 tgaatttgcc tttgtgctat tctcagccgc cgcaaccgct gggattttaa ccccagatac
     1081 tcacgctacc ttaaccgctg cggtaattgt ctcaatgttg ctttccccac ttctcatttt
     1141 aatcaagcaa ggagtgagaa agaaaaaagc gaaaaatgaa tccactaata tgacaggggt
     1201 tgaattaccg gaagatttag aagccaatgt attagtcatc ggttttggac gctttaacca
     1261 aatagtctgc caagccttat tagccaaagg actaagtgta tcggttattg attcaaatac
     1321 tgatcatatt cgtgctgctg ctcgttttgg ttttaaactt tactatggtg atggagcgag
     1381 actagatgta cttagggcat ctggcatcgc caatgcaaac tgcgtaattg ttggcgtagg
     1441 caatccggaa agaacggaga aaatcgtaga gctgattaaa tctgaatacc ccttagtacc
     1501 tgtatttgcg agaacctatg atagacaaag tgcggttgat ttagtcaaaa agcaccacgt
     1561 tgattatcac attcgagaaa cctttgaatc agccctcgca ttaagccaag ccgccattga
     1621 acgcttaggt tctagcgagg aagaggcaaa acaaattatc agctatgttc gccgattaga
     1681 tgcagaacgc tttaatgagg aattattaca cggtttctcc gcagaagtta tccgcaaata
     1741 ttgggtacca acaccttggg taaatccaca acacgaaggt agtgcactta atgaagaaac
     1801 ggctgatatt ttagaagagc ttggtgagac agtagaagtt ataaaagtgg atatcactga
     1861 taaaaattaa agaatttata ctttgaatcc ttattcaagt ataagccttc ctatacatat
     1921 cgcataatca ctcgtaaaaa agcaccctat cggcataatc tgatagggtg ttaatggtaa
     1981 taaaccatcg cacgatgaca aggagaatat ctatgaaaaa aacaataaat caatttgaac
     2041 ttacattttt taagaaaatt tggcgtggag aagtcagccc taatttttct gcctcgttaa
     2101 ccaaattcat cgctttatta atatcttttg ctttaatcgc tttcattacc gcctgattaa
     2161 aataggcttc cgtatcttta tctactgctg tttttactgc aactggattt tcttttatcg
     2221 gcaacggtat agccgtttta gctgccggcg ttgctgcttt gtttgagctg aaaatttcag
     2281 tcggtaatcc aataaattta gtgccgttcg agccggtaac gttgatgtga atttgccctt
     2341 ttaaactgtg tgctacttca atatcgttaa ttgctggtgg ttgtttaccg gttgcttttg
     2401 cataggtttt tgccggatgc ggcatcatcg tggttttggc taaatcttgc tgcgtggtat
     2461 aaatgagcaa gtaaatataa tcttggttca ttgccggcgt taaattaagt tctgccccta
     2521 aacggctacc tttgagtcct cgctcttcca ataatttaaa ctcagaagag gggtaagttg
     2581 atgccacatt aaattgacta tccaacacga ctgccgtggg tacaaaaaca tttttgtcca
     2641 tcaccgggct ttcgatttca atttccaatg tgccttgatt tgccggaata cgataagctg
     2701 caaccgggct ggcaataccg gcaaacgctg tggtaaatgc ttgtttgtgt tgctcgctta
     2761 gatctgtttt tacggtttgt gaaaatggca catcttgcca ttgaatttga gctaattcag
     2821 ccgagttaat atgaatagac ttacctgccg agccatttgc tatactcgga gacaccacca
     2881 aaagatgggc gaagaatatt gctgtcgaaa gaagcgtttt tttcatatta acccctaaaa
     2941 atcgtgaaat aggataaagt gctgaaatag tgggtaggta atcctaccca cacaaaggtt
     3001 tgatgattac caccaagctt caaattgaac accggtgata aactcgccgt ctttggcttt
     3061 atagccggca tcggtacgag ctttcgtgtt gaatttatca ttccaacgtg cataagtacc
     3121 aaacacacgg attgcagggc gagcccaaat gctattacca gcctgccatt gttgtgcaac
     3181 ggtgtatttt accaagtcat ttttcttgcc tgttgcttga tctttaatgc gatcataacc
     3241 aacttctaat aatgtactca ttgtatcatt ccatttgtac attgggcgaa tacctgctga
     3301 gtaccaagtt ttaccttgtt tattatctag ttttgttttt tcgtagatta aggcatacat
     3361 tacttcaact ttatcactcg cttgcactac cccttggttg attaaacgaa gcatattacc
     3421 tttattatct gctttcgaac cctgtgcgtg cccattattc caagaagtca tagagtcggt
     3481 tgcatattgt gcagtaaatt tattgaaacc accaaagaag ttaccttgag tgtattccgc
     3541 tgttaccata taaccgtttt tggttgctcc tttttcaagg gctgcacctt tcttagcatg
     3601 tgcattaccg taatcaaagc ctaactctaa cgaaccatct ttccaaagct caataccggc
     3661 taaccgaaca tcaaaaatat cgttgtaaac atcggcttta ttacgctgct tatctaattt
     3721 aattttacct gtgctaggat ctaatttata aactgtagta tatccaaaag tattcgcccc
     3781 tccacgctct gtatcacgag taaccgctaa agagagtttt ccgaagccta aatcaatatt
     3841 ttcaacccct gcacccggac ctgaaatatc ccagtaatag aagtcattca tatgtacatc
     3901 atggcgttgg taaaaacgtt taccagccca taaggtggca cctggtaaac tatctgcaaa
     3961 gtttttgaac tgtacattta attcacgtag tgctggactt gttggtgtcc aatcattatt
     4021 gtgaagcgta ccgccgtaag caaggtttgt atcaaagtag atagatttct caccactttt
     4081 gaataattcc tgacctaatt tcaattctgc ataggtatca gattcgttac ctaaacggta
     4141 ttttgaacca ccaccattta ccgtgaa
//
LOCUS       DANLXB010000198         4160 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLXB010000198 DANLXB010000000
VERSION     DANLXB010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            73..2007
                     /gene="iolD"
                     /locus_tag="PXD41_002266"
     CDS             73..2007
                     /gene="iolD"
                     /locus_tag="PXD41_002266"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL6289755.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            2134..3030
                     /gene="iolE"
                     /locus_tag="PXD41_002267"
     CDS             2134..3030
                     /gene="iolE"
                     /locus_tag="PXD41_002267"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL6289756.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            3032..4042
                     /gene="iolG"
                     /locus_tag="PXD41_002268"
     CDS             3032..4042
                     /gene="iolG"
                     /locus_tag="PXD41_002268"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL6289757.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
BASE COUNT         1216 a          909 c         1024 g         1011 t
ORIGIN      
        1 taaatttttc atttgtaaaa atcagtagaa aaccgaccgc ttgcaaaagc gatgtaagcc
       61 agaggaggct ttatgcagac tactcgttta acggttgcac aggcgttagt gcaatttttg
      121 gataatcaat atttagacgt ggacggcaaa gagattaaat tcgttcacgg tgttgccgct
      181 attttcggcc acggcaatgt gctgggaata ggtcaggcgc ttgctcaaaa tgccggtggt
      241 ttaacgctct accaaggcag aaatgagcaa ggtatggcac atttggcgat gggctttgct
      301 aagcaaaatc tgcgtcaaag aattattgcc tgtacttcct cggtcgggcc gggggcggca
      361 aatatggtta cggctgcggc aacggcaaca gcgaaccgta ttcctcttct tttattaccg
      421 ggcgatgtgt ttgcgacccg ccagccggat ccggtactgc aacaaatcga acaaccttac
      481 gatttaagca ttagcactaa cgatgcgttc cgtgccgtca gtaaatattg ggatagagtg
      541 caacgccctg agcagttaat gagtgcttgt atcaatgcgt ttcgtgtgct gaccgaccct
      601 gctgaaaccg gtgctgtcac cattgctctg ccgcaagatg tacaagcgga gagttttgat
      661 ttcccgaaca gcttcctgca aaaacgagtg catcgcttag agcgtacacc gccgacaaca
      721 gcgatgatta agcaagcggt aacattaatt caaaccaaga aaaaaccgct gattgtctgc
      781 ggtggcggtg ttcgctactc gcaagcgggt caaattctgc aaaaatttgc taaacagttc
      841 ggcattccat ttgctgaaac ccaagcgggt aaaagtgcgg tggtgtccga tcacgcattg
      901 aatgtaggcg gagtgggaga aaccggttgt ttagcggcaa accgtctggc aaaagaagcg
      961 gatttagtga ttggcattgg tacacgctac accgacttca cgacttcttc caaatggatt
     1021 ttccaaaacc caaacgtgca gtttttgaac attaatgtgg cacgttttga tgcgtacaaa
     1081 ttagacggcg tgcaactggt tgccgatgca aaaactgcat tagaggcgtt aagccaagcc
     1141 attcctactg attatcaagc tcaatgggag aatgaaattt cacaggcgaa agcggatttt
     1201 gctgatgaaa ttcaacgcct gcgcgctgtg caatatcacc ctgatttcac ccctgaaatt
     1261 aacgataatc ttgatcataa agcggttcac aatgaattta ttcagctcac cggttcccag
     1321 ctcacccaaa cccaagtgct gggtattgtg aatgaaacca ttgataacaa tgcgattatt
     1381 gttgccgccg ccggaagttt gccgggtgat ttacaacgca cttggttaag taaaggtgaa
     1441 gagacttacc accttgaata tggctactcc tgtatgggct atgaagtgag tgcggcagtc
     1501 ggcgtgaaaa ttgcccgccc cgaacaagag gtctatgcct tgctggggga cggctcttac
     1561 ttaatggcac acaccgaatt agtgacctca attcaagagg gcaaaaaaat caacgtggtg
     1621 ctgttcgaca atatggcaaa cggctgtatc aacaacctgc aaatcggcaa cggtatggac
     1681 agtttcggta cggaattccg cttccgcaat ggcgaaacta accaactcaa cggcggttta
     1741 gtgccgattg attttgccaa aaacgccgaa gcatacggct gcaaaaccta tcgggtaact
     1801 aacgaagccg aattgcgtgc cgcccttgat gatgcgaaaa aacagaccgt ttctacctta
     1861 atcgatatta aagtgttgcc gaaaacaatg gctcacggct atggctgctg gtggcacgtt
     1921 ggtgtcgcgg aagtgtcaga gagcgagcgt attcaacaag cccgccaacg ctccgaagag
     1981 cagttagcta aggctcggaa gtattagtta aaaaaacaac tccccacttt gagctacgag
     2041 gggagaatat caagcggtca aatttgcaaa atttttgata aaaataaccg cttgcatcca
     2101 aatttatctc tataaatcaa acgaggtttc tctatgaaag ctgaaaacat tcaattaggc
     2161 attgccccaa tcggttggac gaacgatgac ctgccggaac tgggagcgga aaacactttc
     2221 gagcagtgtg tgagtgagat ggcacttgcc ggctacacgg gctgtgaagt gggtaataaa
     2281 tatccgcgtg atgttgccgt gttaaaacac aaactggacg tgcgtggcat tcaaatctgt
     2341 aatgcgtggt tcagcacctt ctttgtggac ggtaaacggg aagagaccat tgccgagttc
     2401 atcaaacatc gtgatttctt gcatgcaatg ggggcaaaag tgatcggctg ttccgaacag
     2461 agccgtagta ttcaaggcac aaccaaatct gtgttcaaag aaaaaccgat tttcaacgat
     2521 gaagattgga aacgtatggc agaaggctat aacgaattgg cgaaacttgc cgccgaaaaa
     2581 ggaatgaaag tctgcctgca tcaccatatg ggaaccggta ttcaaacacc cgaagaggtc
     2641 gatcgctata tggcagaagt gaatgacgat gtctatctgt tgttcgattc agggcatttg
     2701 tactattccg aaggctgcca aaaagcgatg ctcggcgtac tggaaaaata tatcgaccgt
     2761 attatccacg ttcacttaaa agatgtgcgt gatgaagtca tggcggaagt aaaagcaaaa
     2821 gatttaagct ttttagaagg cgtgaaaaaa ggcaccttta ctgtaccggg cgatggtgtc
     2881 attgatttcc gtccgatttt cgatatttta gaaaaacacg actacaaagg ctggatggtt
     2941 gtagaagccg aacaagatcc ggcacttgcc aacccgtttg aatacgccct caaaggcaga
     3001 aaatatatcc gtgaaaccgc aggagtttaa tatgttaaaa gtaggtatta ttggtgcagg
     3061 ccgtattgga cgtgtgcatt ctgaaagtat tagcaaatat gtcaaaggtg ctgaaatcaa
     3121 agcaatctct gatgtaaaaa ttaccgaaga attgaccgct tgggcaaaat cgatgggtat
     3181 tccggaagtt tatgatgact ataaaaaaat cctgcaagat ccggaaattg atgctgtatt
     3241 ggtctgctct tccaccaaca ctcacgctcc gatttcgatt gaggcagcac aggctggcaa
     3301 acacgttttc tgtgaaaaac cggtagatgc agacccagct aaaatccgtg aagtattgag
     3361 tgcagtcgaa aaagccggtg taaaattcca agtgggcttt aaccgccgct tcgaccacaa
     3421 cttcaaggcg attaaagacc gtgtggcggc aggcgacatc ggcgaaccgc acgttatccg
     3481 agtaacctct cgtgatccgg aagccccgcc aatcgaatat gtgaaagtct ccggcggaat
     3541 gttctttgat atgaccattc acgacttcga tatgattcgt tatttatccg gcagcgaagt
     3601 ggaagaagtg tttgcagtcg gcaccgtatt agtaaaccct gaaatcggca aagcgggcga
     3661 tattgatact gccgttatca cgttgaaact gaaaaacgga gcaatcggcg taatcgacaa
     3721 cagtcgcaaa gctgcctacg gctacgacca acgtgcggaa gtgttcggct cgaaaggggc
     3781 aatccatatc actaatgata ccggctcaac tgccgtattc tcaggtgaaa acggcgtggt
     3841 ggcggaaaaa ccaaaatact tcttcttaga acgttatatg caatctttcg ccgatgaaat
     3901 cagctgtttc gtagattctg tggtaaacga caaaccaacg ttagtaaacg gcaatgacgg
     3961 cttacaaccg gtacttattg ccttagctgc gaaaaaatca ctggaagaaa accgaccagt
     4021 gaaattgagt gaagtggcgt aattgatcat aaatacaagc ggtcggtttt actcgctaca
     4081 ctcgcacttc gtgccatcgg catagccgat gttcaaacgc aagcattttg cagaaaaatt
     4141 tgtaaaactg accgtttgag
//
LOCUS       DANLXB010000199         4144 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLXB010000199 DANLXB010000000
VERSION     DANLXB010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4144
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            54..1229
                     /locus_tag="PXD41_002269"
     CDS             54..1229
                     /locus_tag="PXD41_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL6289758.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLATELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            1326..2402
                     /gene="fbaA"
                     /locus_tag="PXD41_002270"
     CDS             1326..2402
                     /gene="fbaA"
                     /locus_tag="PXD41_002270"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL6289759.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            2503..3297
                     /locus_tag="PXD41_002271"
     CDS             2503..3297
                     /locus_tag="PXD41_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289760.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            3439..4077
                     /locus_tag="PXD41_002272"
     CDS             3439..4077
                     /locus_tag="PXD41_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6289761.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
BASE COUNT         1294 a          732 c          886 g         1232 t
ORIGIN      
        1 gatataatcc gaccgttatc acttttaaat tttaatctaa agaggaacaa actatgtctg
       61 ttattaaaat gactgacctt gatttagcgg gtaaacgttt atttattcgt gctgacctta
      121 acgtaccggt aaaagatggc aaagtaacat cagatgcccg tattgttgct accattccaa
      181 ccttaaaatt agcgttacaa aaaggtgcta aagtaatggt aacttcgcat ttaggtcgtc
      241 cgacagaagg cgtatttgaa gaggaaaact ctttacaacc tgtagttgat tacttaaatg
      301 catcagattt aggtgttcct gttcgtttag tgcgtgatta cttagacggt gttgaagtaa
      361 acgagaatga aatcgtggtg cttgaaaacg tgcgtattaa caaaggtgag aagaaaaacg
      421 accctgagtt agcaaaaaaa tatgcatcac tttgtgatgt gtttgtaatg gacgcattcg
      481 gtacagctca ccgtgcggaa ggttcaactt acggtgtggc agaatatgcc cctgttgcgt
      541 gtgcaggtcc gttattagcc actgaattag atgcattagg caaagcatta aaagagccac
      601 aacgtccaat gttagcgatt gtgggtggtt ctaaagtatc tactaaatta actgtgcttg
      661 attcgctttc aaaaattgcc gaccaattaa tcgtgggcgg tggtattgcc aataccttta
      721 ttgccgcaga aggtcacgct gtgggtaaat cattatacga agaagattta atccctgaag
      781 caaaacgttt agcacaagta accaatattc ctgttccggt tgatgtgcgt gtaggtactg
      841 aattctctga aactgcaccg gcaacggaaa aagcggtgag tgaagtacga gctgatgaat
      901 caattttcga tattggtgaa aaatcgtcag agcaattagc tgaaattatc cgtaattcaa
      961 aaaccatcct ttggaatggt ccggtcggcg tgtttgagtt ccctaacttc cgtaaaggaa
     1021 cagaagtgat ttcaaatgcg attgcagaag caacggcaaa cggtgcattc tcaattgccg
     1081 gtggtggcga taccttagct gcgattgatt tattcggtat caaagacaaa atttcttaca
     1141 tttcaaccgg tggcggtgcg ttcttagaat tcgtggaagg taaagtatta ccggcagtgg
     1201 aaatcttaga aaaacgagct aacggctaac agttacaagc ggtcaaattt tgtgaaaatt
     1261 ttgcaagatt tggccgtata ttttaacaat gtgcttttgc acatttcata caaaggaaga
     1321 aaaaaatgtc attattaaac atcgtaaaac cgggtgtagt aacaggcgac gacgtacaaa
     1381 aagttttcgc ttatgctaaa gaacacaact tcgctattcc ggcagtaaac tgcgtgggtt
     1441 cagattcagt taatgccgta ttagaaacag ccgctcgtgt aaaatcaccg gtaatcgtgc
     1501 aattctcaaa tggtggtgcg cagttctatg cgggtaaagg cattaagccg gcttcaggcg
     1561 ctcgtgcaga tgtattaggg gcgattgcgg gtgcaaaaca cgttcatcaa ttagcagaag
     1621 aatatggtgt gcctgtgatt cttcacaccg accacgctgc gaaaaactta ttaccttgga
     1681 tcgatggctt acttgaagca ggcgaaaaac acttcgcaga aaccggtcgt ccgttattct
     1741 cttcacatat gatcgattta tctgaagagc caatcgaaga aaatatggaa atctgccgtg
     1801 aatatttagc ccgtatggac aaaatcggta tgacccttga aatcgaaatc ggcgtaaccg
     1861 gtggtgaaga agatggcgta gataattctg atgtagatga atctaaactt tacacccaac
     1921 cttctgaagt tttatatgtt tacgaccaat taagcccaat cagcccacgt ttcacgattg
     1981 cggcagcatt tggtaacgta cacggtgttt acaagccggg taatgtaaaa ttaaaaccat
     2041 caatcttagg tgcttcacaa gagtatgtat ctaaagagcg tggtttaccg gcaaagtcat
     2101 tagacttcgt tttccacggc ggttctggtt cttcacgtga agagattcgt gaagcaatca
     2161 gctacggtgc aatcaaaatg aacattgaca ctgacaccca atgggctgcg tgggacggta
     2221 ttcttcaatt ctacaaagca aacgaagcat atttacaagg tcaattaggt aacccgacag
     2281 gccctgatgc accaaacaaa aaatactacg atccacgtgt ttggttacgt aaaatggaag
     2341 agtctatgtc taaacgctta gagcaatctt tcgaagactt aaactgtgtg aacgttttat
     2401 aatttgcaaa aaattccata aatcaggccg cttgtataag cggtcttttt ttatttattt
     2461 tttgcggtaa actatcactt tatttccaag caccaattta ttatggcatt acttgaagtt
     2521 aatcatctga ataagcgttt tgttgaacgt agtagcctat ttcataaaca agatttttat
     2581 gcggtaaaag aagtttcttt taccctaaat cgcaaggaaa ctttagcgat tattggtgaa
     2641 aacggagctg ggaaatctac cttggctaaa atggttgctg gtatggttgg gccaacatct
     2701 ggagaactga tttttagagg aacaccgctt tcatttggcg attataaata ccgagctaag
     2761 catattcgta tgatgtttca ggaccctaac gatgcctttg atcctaatta taatatagga
     2821 caaattttag atgctccgct ccgcttggcg acagatttaa atgaagagga aagaaatgag
     2881 cgtattttta atacgctaaa attggtagga atgtatcctg agcaagcgct cgttcctatt
     2941 tcagaggctt ccagtgggca aaagcagcgt attgcgtttg ctcgtgcttt aattttagaa
     3001 ccggaaatta ttattgcgga tgatacgatt aattcactgg atttttcagt caaaacacaa
     3061 ttaattaatt taatgttaag tgtccagcag cgacaaggga ttgcttatat ttatgtgggg
     3121 caaaatttag gtctgatcaa acatattgcc gataaaataa tggtgatgca aagtggcgaa
     3181 gtagtagagt atggcttgac gaaagaggtt ttactgaatc cgcaacatca aattacgaaa
     3241 cgtttaattg aaagtcattt tggaaagcac cttagttcct atgcttgggc aagctaaatc
     3301 tttactcctg ctctaatatg attacttgat aattttgacc tatttcaata aatatgcaga
     3361 ataactcttt tcaattatta cattcctaat ctttaaatta tagactatct caattgtttg
     3421 agagatagga gaaaagagat ggaattgaaa catacgattg aacagcgtaa aactatcaaa
     3481 gcttttaatt caacaattaa gattagtaga actgaattag aagaaatggt cgctttatcc
     3541 cagcttgctc cctcaaaagc aaatctgcaa ccttggcgtt ttgtcattat tgatgttgaa
     3601 attcttaaag cagcattatc aaaaaatgtt gcctttaatg gcccaccttg tgaaacagcg
     3661 tctgctattg tggtgatatt ggcagatttg caatatgaaa aattattagg cgcaattgtt
     3721 gatcaatcgg tagaaactgg gtgtttgcat aaagagtttc gtgaacgtaa atttgatttt
     3781 ttactaaatc ttcataacca agcaactcaa gcagaaatta gagatcaggt attaattgat
     3841 actagtttgg cggcaatgca attaatgcta attgccaaag ataagggcta tgatactcat
     3901 gcgataggcg tgtttgagcg ccctgctgta ttaaaattat tgaatataga tgcagaacgt
     3961 tatttgcctg ttatgctact agctatcggt aaagcagcaa acccagcgtt gccaagttgc
     4021 cgtttacctc tagaatatac ggtttcttgg aacgatggac aaggttttaa aatataaggt
     4081 gcaagcggtt aaatatctta attttttggc aaaaaattgt taaaatttga gcgttgtaat
     4141 ttat
//
LOCUS       DANLXB010000200         4127 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLXB010000200 DANLXB010000000
VERSION     DANLXB010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXD41_002273"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXD41_002273"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL6289762.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXD41_002274"
     CDS             complement(1903..2151)
                     /locus_tag="PXD41_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL6289763.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2275..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2323..2991
                     /gene="queC"
                     /locus_tag="PXD41_002275"
     CDS             2323..2991
                     /gene="queC"
                     /locus_tag="PXD41_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL6289764.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2984..3406
                     /gene="queD"
                     /locus_tag="PXD41_002276"
     CDS             2984..3406
                     /gene="queD"
                     /locus_tag="PXD41_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL6289765.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3406..4032
                     /locus_tag="PXD41_002277"
     CDS             3406..4032
                     /locus_tag="PXD41_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL6289766.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1253 a          757 c          875 g         1242 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggcgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccccacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggttttttcg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc ccaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaag accgcttgta ttttttattt
     2281 gtggttcgta aacctcccac acaaaaaaac taaggacaca aaatgactca tcaaaaacca
     2341 aaagccgttg tgattttttc cggcggtcaa gactctacca cttgtttatt ccaagctatt
     2401 gctgaatttg gcaaagaaaa tgtggaagtc gttacctttc aatatgggca acgccattcg
     2461 attgaacttg aaaaagcacg ctggatttct aacgatttag gcgtcaaaca aacgctgatt
     2521 gatacttcgg tgattaaagc gattactacc aatgcgttaa tggataataa tgctgaaatt
     2581 caacaacaag gcagcacacc caataccttt gtggatgggc gtaatgcctt atttctgctt
     2641 tataccgcca tttatgccaa agggcagggc attcaaacta tttttaccgg cgtgtgtgag
     2701 accgatttta gtggttaccc tgattgccga gatgtatttg taaaatcaat gaatgtaacg
     2761 ctaaatttag cgatggacta taatttcaac attcgcacgc cattgatgta tttaactaaa
     2821 aaagaaactt gggcattagc agataagctg ggtgcttttg attatattcg agaccatacc
     2881 cacacctgtt atttaggcgt tgaaggtggt tgccacgact gcccgagttg cgtattgcga
     2941 gaaaaaggct tgaatgaata tttagcagaa agggaggtaa gcaatgttta aaattgctaa
     3001 agaatttagt tttgatatgg ctcatatgct agatggacac gatggcaaat gccaaaactt
     3061 acacggacac acctacaaat tgcaagttga ggtggcaggt gagctatttc aagagggagc
     3121 taaaagagga atggtaatgg actattcgga tctaaaagca gtggtaaaac aacatatttt
     3181 agagccgatg gatcacgctt ttatttacga cttacagagt gagcgtgaaa gccaagtagc
     3241 acaattatta attgatttaa actccaaggt ttatggtatc ccaactcgta ccacagccga
     3301 agaaatggcg aaatatatgt ttgaaaaatt agagaaagtg ggcttaccgg ttagcctaat
     3361 tcgcttgtgg gaaacgccta cttcttattg tgagtacagc aaataatggc ggagttaatt
     3421 tcaaaccctc gttttccgat tgttgagatc tttgaaagct tacaagggga aggctttaat
     3481 accggaatgc cggctatttt tgtacgtttt ggcaaatgca acctcacttg cccgtggtgc
     3541 gataccaatt acaatcaatt tgagcaatgg acgttaagcg atattcttgc caaagtaaga
     3601 agctattctg cgaaaaatgt gattattacc ggaggcgagc caacgattca gcctaattta
     3661 tcgttattat tagaacaatt taaaaaagag ggatattttt tagcgatcga aaccaacggc
     3721 ttaaaagagg ttccggcaca aattgattat attgcgacca gcccaaagcg aatgtaccaa
     3781 gaaaagtatc aacgccgttg cattgaattt gcgaatgaag tccgtatcgt cgttgatgga
     3841 gaagtacagg gtttctgtga gcaaatagaa agccaaatta aagctgagca ttactatctt
     3901 tcaccttgtg aggtagaggg aaaaatgaac ttgctggaaa ccatcaccca gattgggtta
     3961 ttaaatcagc gtccaaataa gcctaaatgg cagctaagta tccaaacgca taaaattgtg
     4021 gggattgaat aagtagaagt tagaagatga tttgtaaaag atcagacttg atctgacaat
     4081 tcactctaaa aagtgagagt ttcccgttta gaatatgagt gtccaaa
//
LOCUS       DANLXB010000201         4116 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLXB010000201 DANLXB010000000
VERSION     DANLXB010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(319..1620)
                     /locus_tag="PXD41_002278"
     CDS             complement(319..1620)
                     /locus_tag="PXD41_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6289767.1"
                     /translation="MWVRLGDICLKITDGTHHSPPNIDKSDFLYITAKNIKKDGLDLS
                     KISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNEPFSMLSSVALIKTSQ
                     EIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVPVPPLLEQQRIVQKIE
                     ELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQDPNDELASCLIERIK
                     AEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIKAGQERCIADEVPFEIPQNWTWVRLGE
                     VGDWSSGATPNRHNPEYYNGTIPWLKTGDLNNGIISSIPEFITDKALQECSVRLNPVG
                     SVLIAMYGATIGKLGILKIAATTNQACCACIPFNGIYNKFLFYYLMSQKAEFQKKSEG
                     SGQPNISKEKIINYLFPLPPIHEQHRIVQKIEQLFAEIEKL"
     gene            1798..4074
                     /gene="gshAB"
                     /locus_tag="PXD41_002279"
     CDS             1798..4074
                     /gene="gshAB"
                     /locus_tag="PXD41_002279"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL6289768.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKRKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
BASE COUNT         1232 a          805 c          823 g         1256 t
ORIGIN      
        1 tttaataaat tccagataat aatttatggc tcttagcctt aaattaacag tctgaggctt
       61 atagttttca attaagaata ccttatatcg ctgtaaattg attttagata actgatcaaa
      121 ttttttgtga tattgtttta ccgcaaaaag ataagctgat tgggtatttt cagcaagatt
      181 agattgatta aggtgctttt caaatagatg gatcatatag gtttcctttt aggttggttg
      241 aaaaccgata tgataaaaga tcaataattt agtgactgta gggcgtatcc aacacgccca
      301 agaaagcgat gatgactcct acaatttttc aatctctgca aataattgtt caattttttg
      361 aacaatgcga tgttgttcgt ggattggtgg taaaggaaat aaataattga taattttttc
      421 ctttgatata tttggttgcc cacttccctc actttttttc tgaaattctg ctttctgcga
      481 catcaaataa taaaataaga atttattata aattccatta aaaggaatac acgcacagca
      541 agcctgattt gttgttgctg ctatttttaa tatcccaagc ttaccaattg tcgctccata
      601 cattgctatc aaaactgaac caacaggatt taatcttaca gaacattcct gcaatgcttt
      661 atctgtaata aattcaggta tagatgaaat tattccgttg tttaagtctc ctgtttttag
      721 ccacgggatc gtaccattat agtattcagg attgtgtcgg tttggagttg cacctgaact
      781 ccaatcacct acttccccca acctcaccca agtccaattt tgaggaatct caaatggcac
      841 ttcatcggcg atacaccgtt cctgacctgc tttgatctca taaggtaaat tatcacgcat
      901 tacaatctct gaaacacttt ttggtttttt gagttttttc tcggcaataa gacgattttt
      961 ctccgctttt atccgctcaa tcaggcaaga tgccagttca tcattcggat cttgctcggt
     1021 taatttaccc tgaatagctg cgtgtaacac cgattttttc agctgttcgg ggaatgtatt
     1081 gttgagttta gtgagttgct gttcggtttg ctcgtagcgt tcaacaagcg gtaataattc
     1141 ctcgattttt tgcacaatgc gctgttgttc taggagtggc ggaactggga ctaaataaga
     1201 ttctaattta gttaatgtta ttcttggaat acctgttcca gacatacttc caatagaaat
     1261 gttataaaaa taatgactat tcattacata atttaagtac tcattatcta tttcttgtga
     1321 ggtcttaatt aaggcaacac tggataacat actaaatggc tcattaagag tatttataat
     1381 acttactcca gttgtggctc catctttaat atatagaata tctccctttt caggattaca
     1441 acggctgaaa atttcattat gaatttcttt tgttacatag ctaatttttg ataaatctaa
     1501 tccatctttc tttatatttt tagctgtaat ataaagaaaa tcactcttat cgatatttgg
     1561 gggagaatga tgagttccat ctgtaatttt taggcatata tcccccaacc tcacccacac
     1621 ccaactctca ggaatctcaa aaggtggttc aatggtataa ggggctttat ccgaagcagt
     1681 atttctgtta taaccaaatc atctacttca ttccaataaa ctaaaaccca ctatttcact
     1741 aagtctttca tttgtgttat tgtgccgata catttttttg actacaaagg atagatgatg
     1801 aaactacaaa aacttatccg agaaaatcat ttagcattgc tgtttcaaca agggaatttt
     1861 gggcttgaga aagagagcca acgggttgat cgcaacggca atatcgttac tactccccac
     1921 cctgccgtat tcggtaatcg ctcttaccac ccttatattc aaaccgattt tgccgaaagt
     1981 cagctagagt taatcactcc cccgaatgct aaattagaag acagttttcg ttggctctct
     2041 gctattcacg aagtggtatt gcgttcgttg ccagaggagg aatatatctt ccctctcagt
     2101 atgccggcag gcttgccgcc ggaagagcaa attcaagaag cacaatttga caaccctgaa
     2161 gatgtgcaat atcgccaaca cctttccaaa aactatggga aatataagca aatggtaagc
     2221 ggcgtgcatt ataattttca actttcaacg gaatttgtcg aaaaagcctt tgctttacaa
     2281 acggaatata gcgagctgaa agccttccaa aacgcacttt atatgaagtt agctaataac
     2341 tttttgcgtt atcaatggat tttgctctat ttattggctg ccacgcctac ggtggaatcg
     2401 caatattttt atgaaaaatc accgcttgcg agagggcaac ttgtccgcag cttgcgttca
     2461 agcccttatg gttatgtgaa ttcggaaaaa gtggtggtta atcacgacag cttagaaagc
     2521 tatgttgaaa gccttgaagc caatgttgcc aacggattat taattgccga aaaagaattc
     2581 tattccaatg tgcgtttacg agggggcaaa aaagcccgtg agctattgga aaacggtgtg
     2641 aaatacgccg aattccgttt atttgattta aaccctttcg ccccttacgg cattgagctg
     2701 aatgatgcca aatttatcca ttatttctta ctcggtatgc tttggctgga ggaaacaagc
     2761 ggtcaaaaag aggtcgaaat cggcaaacgg aaactttacc aagtcgcact tgaagatcca
     2821 agaacagaaa ccgctttccg tgccgaaggt gaagccattt taaatcaact tttagcgatg
     2881 cttgaagaat tatctgccgg tcaggaaagc ctagatttgg tgcgggaaaa attagctcaa
     2941 tttgctgatc caagcaaaac cctgaacgga cgtttaattg ccgcaataga ggaagtcggc
     3001 agttataaag cattgggggc taaattggct caaacctata aggcacaagc ctttgagcgt
     3061 ttttatgcgt tatcggcatt tgataatatg gaactttcca ctcaagccct gttttttgat
     3121 ttgatccaac aagggattga ggtggaagta ctggacgaaa acgatcaatt cctcgcccta
     3181 aaatttggcg atcatttgga atatgtgaaa aacggcaata tgaccagccg agatcaatac
     3241 atttcaccgc tgattatgga aaacaaagtg gtgacgaaaa aagtattggc aaaagccggc
     3301 tttaacgtgc cgaaaagcgt tgaatttacc aaccttgaac aggctgtggc acattatccg
     3361 ctatttgaag gcaaagcggt ggtgattaag ccgaaatcga ctaactatgg tttagggatt
     3421 accatcttcc aacaagcggt caaaaatcga gaagattttg caaaagcggt tgaaattgcg
     3481 ttccgtgaag acaaagaggt gatggtggaa gactatttag tcggtactga ataccgcttc
     3541 tttgtactgg gcgatgaaac ccttgcggtg ttactgcgtg taccggcgaa tgtagtggga
     3601 gatggcattc acagtgtaaa agagctggtg gagcgtaaaa atgacgatcc gctacgtggc
     3661 gatggctctc gtagcccgtt gaaaaaaatt gccttaggtg aaattgagca gttacaactt
     3721 aaagagcaag gcttaaccgt agattccgta ccggcgaaag gtcaaacagt tcaactgcgt
     3781 gccaattcca acatcagcac cggcggcgat tcgattgata tgaccgacca aatgcacgaa
     3841 agctatagac aaattgcagt gggaattgct caggcaatgg gggctaaagt gtgtggggtg
     3901 gatttgatca ttcctgatct caccaaacct gccgagccaa atttaagctc ttggggcgtc
     3961 attgaggcaa acttcaaccc aatgatgatg atgcacattt tcccttacca aggcaaatcc
     4021 cgccgtttaa ccaaagcggt aatcaaaatg ctgtttcctg agataggcaa ttaaattttc
     4081 tctctatacc tcttttaagg agaatttact caagaa
//
LOCUS       DANLXB010000202         4092 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLXB010000202 DANLXB010000000
VERSION     DANLXB010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            92..2098
                     /gene="tkt"
                     /locus_tag="PXD41_002280"
     CDS             92..2098
                     /gene="tkt"
                     /locus_tag="PXD41_002280"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL6289769.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            complement(2224..3294)
                     /locus_tag="PXD41_002281"
     CDS             complement(2224..3294)
                     /locus_tag="PXD41_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL6289770.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(3309..4034)
                     /gene="fadR"
                     /locus_tag="PXD41_002282"
     CDS             complement(3309..4034)
                     /gene="fadR"
                     /locus_tag="PXD41_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL6289771.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
BASE COUNT         1190 a          890 c          821 g         1191 t
ORIGIN      
        1 tccatttttg agtttttcta gcaaaatagt gtagaatcca attcgatatc ctttccattt
       61 tatataacat tctcgattag gagtaacaca aatgacagaa cgtaaagtgc tagcgaatgc
      121 aattcgtttt ttaagtatgg atgctgtaca aaaagctaac tcaggccacc caggcgcacc
      181 aatgggtatg gctgatattg cagaagtttt atggcgtgat tttttaaaac acaatccaac
      241 taatcctaaa tgggcagatc gtgaccgttt tgttctgtct aacggacacg gttcaatgtt
      301 aatctatagc ttacttcatt taaccggcta tgatctctct attgaagatt taaaacagtt
      361 ccgtcagtta cattctaaaa cacctggtca ccctgaatat ggttatgcac cgggtgttga
      421 aaccaccaca ggcccgttag gtcaaggtat taccaatgcg gtcggtatag cgattgcgga
      481 aaaaaccctt gcagcacaat ttaaccgtga aggtcataaa attgtcgatc actacactta
      541 cgctttctta ggcgatggct gtttaatgga aggtatctca cacgaagctt gctctctcgc
      601 cggtacatta ggcttaggca aactgattgc tttctacgat gataacaata tctctatcga
      661 cggccacgtt gatggttggt tcactgatga taccgcacaa cgctttgagt cttatggctg
      721 gcaagttatc cgtaatgtcg atggccataa cccagaacaa atcaaatttg cgattgaaaa
      781 tgcacaagcc gaaaccgagc gtccaacttt aattatttgt aaaaccatta tcggctatgg
      841 ttcaccaaat aaatcaaact ctcacgattg ccacggtgcg ccattgggtg atgctgaaat
      901 ccaagccgct cgtgaatttt taggttggga acatgcccca tttgtgattc cagctgaaat
      961 ttatacagag tgggatgcaa aagcaaaagg tacattagca gaaaaagatt ggaacgctaa
     1021 atttgctgct tatgaagcgg cataccctga actagccgct gaatttaaac gccgttacgc
     1081 aggcgaatta ccggctaact gggaagctga aagcaaagct tttattgaaa aattacaagc
     1141 aaatccggca accattgcaa gccgtaaagc atcacaaaat gcaatcgaag cttacgcgcc
     1201 aatcttacct gaattcctcg gcggctcagc tgacttagca agctctaact taaccttatg
     1261 gtctggctca aaaccgattc gtgcggaaca caatgtagat ggtaactaca tcaactacgg
     1321 cgtgcgtgaa ttcggtatgt ctgcgattat gaacgggatt gccctacacg gtggtttcat
     1381 tccttacggt gcaaccttct taatgttcta cgaatatgca cacaatgcgg tgcgtatggc
     1441 agccttaatg aagcaacgtg ccttatttgt ttatacacac gactccatcg gtttaggtga
     1501 agacggcccg acccaccaac cggtagaaca aactgcttca ttacgccaaa ttccaaactt
     1561 agaaacctgg cgtccggcag accaagtaga atctgctgtt gcttggaaag cggcggtaga
     1621 acgtaaagac ggcccgacag cactaatctt tacccgccaa aatctggctc aacaacaacg
     1681 tactgcggag caattagcga acatctctcg tggtggctat atcttgcgtg aatgttgcga
     1741 aaaaggcagt tgcccggatt taatcttaat tgcaaccggt tctgaagtag atttagcaat
     1801 gaaagccgct gatgtgttag atgcagaagg cgtgaaagtg cgtgtagttt caatgccaag
     1861 caccaacgtg tttgacaaac aagatgaagc ctatcgtgaa tcggtattac cacgttcagt
     1921 cactaaacgt gtggcgattg aagctcaatt agctgacttc tggtataaat atgtcggctt
     1981 tgatggtcga attgtaggta tgaatagctt tggtgaatcc gcaccagcag atcaattatt
     2041 caaactcttc ggctttaccg ttgaaaacgt ggttgctaaa gcaaaagaaa tcttataatg
     2101 aaacaataag ataaagaaaa gcgggaatta acttcccgct tttttgttga acaactgtta
     2161 tgataagcgg tgaaatttca gcgatttttt gcaaaaaatt agcgaaatat gaccgcttgt
     2221 aagctataac atttcagctt gagcaagaat tttttcttgc tctaaagcta atttttccag
     2281 ttttcgctgt tctttacgct cttcatcaac cgcttcccac gcatcatagg cttgcacaat
     2341 tttggcaacc acagggtggc ggacaatatc tttgctgtca aagaaattaa agctgagttc
     2401 cggcacttct tttagcactt ccattgcgtg ttttaagcct gatttttggc tacggggcaa
     2461 atccacttgg gtaatatcgc cggtaatcac cgctttggaa ttaaagccaa tacgggttaa
     2521 gaacattttc atttgctcgg tagtcgtgtt ttggctttca tctaaaatga tgaacgcatc
     2581 gtttaaagta cgccctcgca tataagcaag tggggcaatt tcaatcacac cacgttccat
     2641 caacttttga gctttttcaa agccaagcat ttcaaacagg gcatcatata acgggcgtaa
     2701 gtaaggctca attttttgcc ctaaatcgcc gggtaaaaaa ccgagctttt caccggcttc
     2761 caccgccgga cgggtaagta aaatacggcg gatttcttgg cgttcaagcg attccaccgc
     2821 tgccgctacc gctaaaaagg ttttgcctgt gccagcaggc ccgataccaa aactgatgtc
     2881 gtggcttaat atatttcgta aataggcttg ttgatgttcg ctacgaggtt taatcacccc
     2941 tcgcttggtt ttaatcgcta tttcgccttg cgagccggct tgccattggt tttgtagtag
     3001 cattcggctt tcctgaatcg ccaaatgtat atcttctaag tccaattcct taattttgcc
     3061 tttaatcggg gcagtttcat tatacagttg cttaatcagc ttcacactat tttgaaccaa
     3121 ggtagcagaa tagtgattgt catcttccga ttgaatcgta aagttgaagc ctgttcgagc
     3181 aataatgaga ttaaaacttt tttcaattaa ggctaaatgc tcatcaaatg caccacaaag
     3241 cgattgcaga cgagcattat cttgcggttc taagctaaaa ataatttcgt tcaaaattct
     3301 accttctgtt aaagctgacc aaagctttca ggaatattag cggataattt ttgccaaatt
     3361 tcaccactag attggcgatt tttagccata caagcggctg ctttttcact atcttttgca
     3421 agacaagtac ataataatga acggtaaaag cttaacgtta attgacgatt attttcatca
     3481 gcaaagaaaa tttttgcgac ttgatgatac attgatttaa agctatttag gatcaacgca
     3541 tacacaggct tattggctaa aaaagtaaat tgtctgaata acttataatc aaattcagca
     3601 taagcagctg ctgtattttc taattcatct agtccatcaa agagtttagc actttcttca
     3661 ggagcaaggt aaatcgcttc tggaatataa gcctccgcca tacgagtacg taatgacacc
     3721 acattggcaa tcaccactgg aagatagctt ttatctagct taataatagt gccaataata
     3781 ttaggccccg aagtttccca aatatcattc actcttgttg gcttgccgtg ctgaatactt
     3841 aaccaacctt ctcgcgctag acgttgtagt acttcacgta aagttgttct tgttacccca
     3901 atgcgctctg ctaactctcg ctcggcagga agatcagagc cggcagggaa atgattattc
     3961 caaatactct ttacaatata ttcttccgct aacgctgccg ggctttgcgc ttttaaaata
     4021 tcactgtgac ccattaatgc cccccaagca aaaaatatgc ttatctaaaa tctaactatt
     4081 ctttatttct aa
//
LOCUS       DANLXB010000203         3992 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.205, whole genome shotgun sequence.
ACCESSION   DANLXB010000203 DANLXB010000000
VERSION     DANLXB010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3992
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            47..1522
                     /gene="mepM"
                     /locus_tag="PXD41_002283"
     CDS             47..1522
                     /gene="mepM"
                     /locus_tag="PXD41_002283"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL6289772.1"
                     /translation="MAVFLLAVFSLFVDIVLALKDQSSINNTSSQEDIIAIDKQEKYQ
                     SINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDEIVDDQTATSYEDELVGQD
                     DEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRIQNQFSYTVARGDKLKDVL
                     EQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELEYMNWLVSEKEERVYERKE
                     NGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDRQINQLAVGLQSQIATNKL
                     KKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAIQADNGRYYSRYGETLSGG
                     FARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPIGTPIIAPSDGVVEHVAYQ
                     ARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIALSGNTGGSTGPHLHYEFH
                     INGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLKM"
     gene            1532..2215
                     /gene="dsbC"
                     /locus_tag="PXD41_002284"
     CDS             1532..2215
                     /gene="dsbC"
                     /locus_tag="PXD41_002284"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL6289773.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2300..>3992
                     /gene="recJ"
                     /locus_tag="PXD41_002285"
     CDS             2300..>3992
                     /gene="recJ"
                     /locus_tag="PXD41_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL6289774.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQ"
BASE COUNT         1334 a          643 c          878 g         1137 t
ORIGIN      
        1 tgtaatttta gcgagagatc gtaagcgaca taaaaaacat tttaagattg cggttttctt
       61 attagcggta tttagtctat ttgttgatat tgttctcgca ctaaaagatc aatcctcaat
      121 caataataca tcttcacagg aagatattat tgccattgat aaacaggaaa aatatcagag
      181 tatcaacact aatttggcgg aaaataatac tctccatcag gagcaacatt ccagttttat
      241 taattatgtg actgatttac tgactcagtc ggcattagta atcgaacatg acgacgaaat
      301 tgttgatgat caaacagcga cttcttatga agatgaatta gttgggcaag acgatgaagt
      361 agaagaaggg attgaaacgg ttgaaaatca agttcctggg gaaaaactcc cagaagaagc
      421 tgaaaaggca ttagaagatt tacttgatgt ggctgatcaa gcactacgaa ttcaaaacca
      481 attcagttat accgtagctc gaggtgataa acttaaagat gtattagagc aatcaggctt
      541 aactgcatcc gttgcgaaaa atttaattaa gcaacattcg gcattagcac aattagaacc
      601 gggtcaacaa ttttattggg tattagataa tgacggtgaa ttagaatata tgaactggct
      661 ggtttccgaa aaagaggaac gggtttatga gcgaaaagaa aatggtaaat tttcttttca
      721 aagatttgag aaaaaagggg aatggaagtt agatgttgta agaggaacta ttcagaatag
      781 ttttgcggtt agcttaaaag ccgttggctt atcagaccgc caaattaacc agctagcggt
      841 tggattgcag tcacaaattg cgacgaataa attaaaaaaa ggggataggt ttgcaattct
      901 gattaagcgg gaatatattg acggcaaagt aacggattta ggaaatgtgg aaggaatcca
      961 tgtaattagc agtaaaaaaa gttattatgc tattcaagca gataatggac gctattatag
     1021 tcgatatggt gaaacattaa gtggaggatt tgctcgtcat ccattattat ttgcagcaag
     1081 agtaacttct tctttcaacc ccaaacgcag acaccctatt acagggagaa ttagtccgca
     1141 taaaggggtt gactatggcg tgccaatagg tactccgatc atcgcaccaa gtgatggtgt
     1201 cgtagagcat gtggcatatc aagcccgtgg agcaggacgt tatattcgga taaaacacgg
     1261 acatattacg actgtttata tgcacctcag caaaacgttg gtaaaaccag ggcagagtgt
     1321 taaaaaaggg gagcggatag cattatcggg taatacaggc ggttcaaccg ggcctcattt
     1381 acactatgaa ttccatatta atggtcgacc ggtcaacccg attacggtaa aattgcctgg
     1441 ctcaaattca ggtatgggta ataaagaacg tcaagcattc ttaaataaag cgaagaatgt
     1501 agaaagtaga ttaaaaatgt aaggattctc aatgaaaaaa aatctaatca ctttaggatt
     1561 aatgtgttta tcaaccatca cgtttgcttc agatgcaaaa ctaaaaagcc agcttgaaaa
     1621 aattggagcc acagatgtta aaatttcaga ttctccatta acaggcttta aaatggcgac
     1681 ttcaaatgaa ggtgttgtat atatcagcca agacggtcgt tatgtaattc aaggtaaagt
     1741 atttgagcta aaaaatggta aagcgattga tattactaat caaggattgt tggcagaatt
     1801 gaattcatac actaatgaaa tgatcgtata tccagcgaaa aatgagaaac atgtgattac
     1861 ggtgtttatg gatattactt gccattattg ccatttacta catactaaaa tcaaagaata
     1921 taatgattta ggtattacca ttcgctattt ggcattcccg cgtggtggaa tgaataccca
     1981 aacagcaaaa caaatggaag ctatttggac atcagcagac aaagtaaaag cactgaatga
     2041 tgctgaagat ggtaaattac caacccaaat aaaaacgccg gatattgtga aaaaacatta
     2101 ccaattaggg attaaatttg gtgtgacagg taccccaaat atggtaactt cagaaggtga
     2161 gttgattggt ggttatgtag agcctaaaga attagcgaaa atgttaagtg agtaattcat
     2221 taacttgaat acaagcggtc tttttttgta aaatttttgc aaaagaagac cgcttgttgt
     2281 ttcattaaag aagagtattg tggaaaaaat aattaaaagg cgcccattat taacaacgga
     2341 aatagtctct acaaacccgt tattaaatcg aatctatcaa agtcgaggca taaagaatac
     2401 gcaagaacta gagcataatt taaagaattt gcatagacca cagcaacttg ccaatattga
     2461 gcaagccgtt gacttgctat tacaagcctt tcgtgaaaaa agccggatca ttattgtggg
     2521 tgattttgat gcagatggtg caaccagtac atcgcttgcc cttattgcgt tacgccaatt
     2581 gggtttcgat aaggtagatt atttaattcc ggatcgtttt tctcaggggt acggattgag
     2641 tgtagcggtt gctgaaatgg tattagcaaa aggggcggat ttagtcttaa cggtagataa
     2701 tggaatttct tcgactgaag gcattgctct gctaaaaagc catcagattc aagttttggt
     2761 taccgatcat catttaccgc cagagagcct acccaatgca gatgcactgg taaaccccaa
     2821 tttagctttt tgtgaatttc cgtctaaatc tttagccggg gtaggcgtga tcttctatgt
     2881 aatgatggca ttgcgttctc gtatgagaga acaacattta tttgaaaata aaccagagcc
     2941 aaattttgct gaattactgg atttagtcgc tttaggcaca gtggctgatg tagtgccgtt
     3001 agatcaaaat aatcggatat tggtgcatca agggttacag cgaatccgtt cagggcattg
     3061 ccgtttaggg ataaaagctt tagcggaggt gggcaagcga gatctttcta ctttgcaagc
     3121 agcagatttg ggttttgcta tcgcaccacg tttgaatgca gctggtcggt tagaaaatat
     3181 gtctttaggg gttgagttac taatttgtga aaatatggaa ttagctcgcc ggcttgcgct
     3241 tgatcttgat tctcttaatc aaacccgaaa agagtttgaa caagaaatga aagcagaagc
     3301 actgtcgatt tgtgcgaatt tgccaagtct tgcgcagtct gaacaggcac acggaatagt
     3361 gttatatcaa gcagattggc accaaggtgt aattgggatc ttagcttctc gcattaaaga
     3421 tcaatttaac cgtcctgtca ttgcttttgc acaagaaagt gaggaaagtg aatatctaaa
     3481 aggttctgct cgctcgatca acggagtaca tatgcgagat ttactggaac atatcgatat
     3541 gcgacatcca gacttgattg aaaaatttgg tggacacgca atggcggctg gtttgactat
     3601 ccatcaatca aaattagatt tatttaaaca gatatttgac caatctatta atgcaattat
     3661 cgagcctgag caattacaag gcatcattta taccgatggt gagttaaatg cactagagtt
     3721 tactttagcc aatgccgaga tgattaggca aggtgggcct tggggacaac attttccaga
     3781 acctagtttt gaaggggagt ttagcattct ccaacaaaaa ttactcgcag gtaaacattt
     3841 aaaattaatg ttgcaatcag agaaagggca actatttgat gcaatttggt ttaatgtgga
     3901 tgtaagggcg tttcctgact tatcgatcaa aaaggcaaga ttagtttata ggttggatat
     3961 taatgaattt cgaggagaga aatctttgca at
//
LOCUS       DANLXB010000204         3985 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLXB010000204 DANLXB010000000
VERSION     DANLXB010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            90..542
                     /gene="iscR"
                     /locus_tag="PXD41_002286"
     CDS             90..542
                     /gene="iscR"
                     /locus_tag="PXD41_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL6289775.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
     gene            597..1817
                     /locus_tag="PXD41_002287"
     CDS             597..1817
                     /locus_tag="PXD41_002287"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL6289776.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            1944..2327
                     /gene="iscU"
                     /locus_tag="PXD41_002288"
     CDS             1944..2327
                     /gene="iscU"
                     /locus_tag="PXD41_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL6289777.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            2436..2759
                     /gene="iscA"
                     /locus_tag="PXD41_002289"
     CDS             2436..2759
                     /gene="iscA"
                     /locus_tag="PXD41_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL6289778.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            2769..3290
                     /gene="hscB"
                     /locus_tag="PXD41_002290"
     CDS             2769..3290
                     /gene="hscB"
                     /locus_tag="PXD41_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL6289779.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            3344..3976
                     /locus_tag="PXD41_002291"
     CDS             3344..3976
                     /locus_tag="PXD41_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL6289780.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
BASE COUNT         1290 a          710 c          881 g         1104 t
ORIGIN      
        1 agtcctaaat gattgactaa attggtgggg tatatcaaaa tttagcaact gtttcagaag
       61 attttctgga taatcaatga ggatatttta tgaagcttac ctcaaaaggg cgttatgcag
      121 taaccgccat tttagatatt gctttacacg gaaaactaga gccggttagc ttagccgata
      181 tttcagatcg ccaagcgatt tcactgtctt atttagagca actgtttgct caacttcgcc
      241 gtgacggtat cgtgcagagc gttcgtggac cgggtggtgg gtatcaatta ggtaaaaaac
      301 cggaagagat tagcgtgggt atgatcatct ccgccgtgaa tgaaaatatt gatgtcacca
      361 aatgtaaagg tagtggtaat tgccgtaaag attctcagtg tttaacgcat tctttgtggg
      421 agcggttaga agatcaaatt gagcagtttt tagggacaat ttcagttgcg gatttagccg
      481 cagaacacgc tgatcacgat tgtgaaaaag agcattgtca cgatcatcct catcatcact
      541 aattgcaaat tttttatcaa aaatgaccgc ttgggttgtt ttaactagga gtaacaatga
      601 aattaccaat ttatttggat tacgcagcaa ccacaccaat ggacgaacgt gttgcgaaaa
      661 aaatgatgga atatatgacc aaagacggta tctttggtaa ccctgcttct cgctcacaca
      721 aatttggttg ggaagcggaa gaagcggttg atgtggctcg taaccaaatt gccgatttaa
      781 tcggtgcaga cagccgtgaa atcgttttca cttctggtgc aacagagtcg gataacttag
      841 ccatcaaagg tgcggctcat ttctatcaaa ccaaaggtaa acacattatc actgttaaaa
      901 ccgaacataa agcagtatta gatacttgcc gtcagttaga gcgtgaaggt tttgaagtga
      961 cttacttaga ccctgaagaa gacggtattt tagatttagc taaattaaaa gcggctattc
     1021 gtccggacac aattttagtt tcggtaatgc acgtaaataa cgaaatgggc gtaatccaac
     1081 cgattaaaga gatcggtgca atctgccgtg cgaagaaaat cattttccac gttgatgcga
     1141 cccagtctgt tggtaaaatc gaagtgaatg tacaagactt aaatgttgat ttaatgtctt
     1201 tctcaagcca caaattatac ggaccaaaag gtatcggcgg tctatatgtt tgtcgtaaac
     1261 cacgtgtgcg tttagaagca attattcacg gtggcggtca cgagcgtggt atgcgttcgg
     1321 gtacattgcc tgttcaccaa attgtaggta tgggtgaagc atatcgtatc gctaaagaag
     1381 aaatggcaac ggaaatggct cgtttaaccg tgttacgtga tcgtttatat aacggcttta
     1441 aagatattga agaagtatat gtaaacggtt caatggaaga aggcaaacgt atcggttcaa
     1501 acctaaacat cagctttaac tttgttgagg gcgaatcgtt aatgatgtca ttacgtgata
     1561 tcgcagtatc atcaggttca gcttgtactt ctgcaagttt agagccatct tatgtgttac
     1621 gtgcaatcgg tcgtgacgat gaattagctc acagctcaat ccgtttcact ttaggtcgtt
     1681 ggacgactga agaagaaatc gatcatacta ttgaaatcgt gaaaaaagct atcgtgaaat
     1741 tgcgtgagct ttcgcctctt tgggaaatgt tcaaagaagg tgtagatttg tctaaaatcg
     1801 aatggaatca ccactaattc agaaaaattt tgcaagggca aataatattt gcccctacaa
     1861 aataagcttt catcacaaat agtaaattga atgtaggggc gaaataggtt tcgccggaaa
     1921 taggaaataa aaggaataca aaaatggcat atagcgaaaa agtaattgat cattacgaaa
     1981 acccacgcaa cgtagggact tttgataaag aagcatcaga caccggtaca ggtatggtgg
     2041 gagcaccggc ttgtggtgat attttacgtt tacaaattaa agtgaacgat caaggtatca
     2101 ttgaagatgc acgctttaaa gcatacggtt gtggttctgc aatcgcatca agttctctca
     2161 ttaccgaatg ggtaaaaggt aaatcattag aggaagcagg tgcgattaaa aacagtgata
     2221 tcgctgaaga gttagaatta ccaccggtaa aagttcactg ttcaatctta gcagaagatg
     2281 caatcaaagc tgcaattgca gactacaaag agaaacaagc taagtaatat gatacaatca
     2341 atgcaagcgg tcgatttttg caaaaaattt gcaaaattta accgcttgca tttgctattt
     2401 ctatcttgat ttaatccatt cacataagga aaactatgag cattacctta acagaagctg
     2461 ccgcaaaccg agttcgtaca ttcttagaaa acagaggtaa aggtatcggg ctaaggcttg
     2521 gtgtgaaaac ttccggttgt tcggggcttg cctatgtgct tgaatttgtt gatgtattaa
     2581 atgaagacga tcaggttttc gaacaacacg gcgtaaaagt tattgtcgat gaaaaaagcc
     2641 tgacttactt aaacggtacg cagctggatt ttgtgaaaga aggcttaaac gaaggcttta
     2701 aatacaccaa cccgaatgtt aaaaacgaat gcggctgtgg cgaaagtttt agtgtgtaag
     2761 gaactgtaat gaataaccct tttactttat ttgatttacc cgttcaattt caacttgata
     2821 acgcccagct ttctgagcgt tatcttgctt tacagaaaca gcttcaccca gataactttg
     2881 cccacaaatc aagtgctgaa cagttagaag cggtgcaaaa atctgctgat gtcaatgagg
     2941 cactcaatat tcttaaagat ccgattttac gggcagaagc gatgattgaa atccatacag
     3001 gtgaagccaa aaatctcgaa gaaaaaagta tgcgagatgt ggatttctta atgcagcaac
     3061 tcgaatggca cgaaaaactg gaaaccattg agcatcgtaa agacgaaacc gaactgaccg
     3121 tctttttaaa acagattaaa gcggaacaaa aagcagtatt agaacagctt gaacaaacgt
     3181 taaatacagc cgactggcaa aaagccaatg cgttaaccga caagctccgt tactttaaaa
     3241 aattaattat tcagattgag aaagtagaag aaaaattctt tgactattaa tcctacattt
     3301 gtatggtttt cgcaagcggt caaattctaa ggaaattttg caaatgaaaa atttagaaca
     3361 attattagat aaacaatcgg cttggttaat tttaagagac tggtttaccc aagccaaaaa
     3421 tcattacgaa attttagcga gttaccctga agatgccggc agtgcattgg ttggtatgca
     3481 actttctact cgctcaccgc taggggcaat ggtgtatgaa accggtggcg tatttattga
     3541 ccacggttgg ttacgcattt taggctcagg caacgaaaaa ttgcctcgag gcttatttga
     3601 ttggaacttt ggcaaaactt ttaaacaatc tggcgaacaa ccaagccact tgctggtagc
     3661 ggatgatgca atcggtggct attttgccat taatgccggc ggaatcggct cagatcttgg
     3721 caaagtttat tattatcatc caaaagctaa aaaatgggaa aacacccaat taggttattc
     3781 agaatttcta ggctgggcat tagccggaga tttaaaccat ttttatcagg atttgcgttg
     3841 ggaaaactgg caaaccgatg tagagaaatt acaagggcat caagtgctgg atcttacaag
     3901 taaaatcgcc gttccgattg aacgccacta ccaaggcgaa tttgcccctg aaaatatggg
     3961 atattcggtg gcttaagtgt ttgta
//
LOCUS       DANLXB010000205         3983 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLXB010000205 DANLXB010000000
VERSION     DANLXB010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3983
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(122..2686)
                     /locus_tag="PXD41_002292"
     CDS             complement(122..2686)
                     /locus_tag="PXD41_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL6289781.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2810..3508
                     /locus_tag="PXD41_002293"
     CDS             2810..3508
                     /locus_tag="PXD41_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL6289782.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3484..>3983
                     /locus_tag="PXD41_002294"
     CDS             3484..>3983
                     /locus_tag="PXD41_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289783.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIENKIISLNSNHTNTLPFAEPKKIAQLLAIIDNL
                     PLKNGGIETIQIYLETDLYLKIIGNLDNQSDFQSLESYLYQQDLFETKTEQINVNHKN
                     EIQFIFT"
BASE COUNT         1245 a          864 c          647 g         1227 t
ORIGIN      
        1 ttattgacta aggaatatcc aaatataact cacaaatcgc ccaaaataaa attggcactt
       61 attatcgcaa gaaatccccc tatttttcaa cttttaagag cattatcctt gtaataaatt
      121 attagaataa ttcaccgctt tttagcaccc ctggtggagg taatcctaaa cgtaacggcg
      181 cagattctgt tttttgaggc gctttttcag tataagctct ctctacaata taacgttttg
      241 taggctcagt acccttaata aaatactctt tacgtccatt tcctaagaaa ccactattag
      301 ggtcaatatt aacctcaata atattttttg gaagggtact tttttcgaca ggcttatctg
      361 acaatgcaac tttcatataa tttgtccaag ctggtaaagc agtactagaa cctgaagcac
      421 ctctacctaa tactctttta ttatcatcaa agccaacgta cacaacagta gaaatattag
      481 caccaaatcc cgcataccaa gttgccttgg cattattggt tgtaccagtc ttcccgccca
      541 catccgctcg ttttatcgta ttgagcattt tatagcttgt tcctcgccag ccatattcag
      601 gctcaccagt aattgctgta gctaaagcac tacgcattaa aaaagcgagt tcatcactaa
      661 taacatgagg agcgtaacgt aaccctttga tatgatgaga agattctgcc attaagctcg
      721 gcgcattttt ctcgctattg ttcgcttgta attcaggttc tgaatcgcca acatcttcca
      781 caacatcgtc gtcatcatta ttcgaggaat tcgctatagt ttgtacaccg acttgagctt
      841 catcatgaat tttgactgat tcaaaatatt taggctcagg gtaaacaact gggctatcgc
      901 aactattaca agctactaca ggatttgctt gatataactc gtagccttgg gcatcaataa
      961 tacggtcaat gatatatggt tcaatcaaat aacctccatt attaaatact gcataagctc
     1021 gagccatttc taatggcgta aaagatgcag cacccaatgc aagagattct gttgcaacat
     1081 actgatttcg gttaaagcca aaacgttgta agtagtctgc aacataatca atccctgcca
     1141 tttgtaatat acgaatagcc accatatttt tcgatttacc taatgcaaca cgagttctca
     1201 acgggccgcc ataaacccca tcggcatttt taggtcgcca ctctttttgc cctttctttt
     1261 taatgacaat aggagaatcg ctaattgttg ttgaaagact tagcccttta ttcattgccg
     1321 ctgtgtaaat aaacggttta atcgcagagc ctacctgaac taatgactga gtcgcacgat
     1381 tgaaacggct ttgttcaaag ctaaagcctc caacgataga ttcaatggca ccgttttcac
     1441 tattaattga cactagggct gaatttacct ccggaatttg tcctaaagcc cactccctat
     1501 ttttattttg acgtacccaa atttgttcac ctgcttttaa ccctttaggt gcaaaagaag
     1561 catttgtacg ttttaaaaca gagatatcac catttgccaa taaaattgta tattttgatt
     1621 tatctgcttg cattacaaca gctggtgtaa acggctctga ttttggcagc ttacttaaat
     1681 gatcgataat tttctcatcg tcccaagcag aactacctgt ccataatttt tcagcgcctc
     1741 gccaaccatg acggcggtca taatcaatca aattttcacg taacgcatct tgtgctgctt
     1801 tttggtctgc tgaaagtacc gtggcgtaca cttttaagcc tttgttataa gcaatatttt
     1861 ctccatagcg tttcacaatt tcttgacgaa ccatttctgt cacataatcc gctcgaaatt
     1921 ctaatgtcgc accatagtag ttagctacta ctggctctgc tttagctttc tcatattcct
     1981 cttttgtaat atctccggtt tctagcattc tcccaagcac tacattacga cggtcttccg
     2041 cccgttttac tgaataaagt ggattcatcg ttgaaggcgc ttttggaagc cctgcaataa
     2101 ttgctatttc agaaagggtt aaatctttca aagatttatt aaaataagtt ttagccgcag
     2161 cggcaacacc gtgagaacga taccctaggt aaattttgtt taaatacagc tccagaatct
     2221 catttttact gagaacctgt tcaatttcta aagctaaaat tgcctctttg gccttacgct
     2281 ctaaactacg ttcaggtgtt aagaaaaagt ttttcgccag ctgctgggtg attgtacttg
     2341 cgccttgagt atctccctgg ctagtgcgcc atattgcacg cataatacct ttaggatcga
     2401 tccctttatg ctcgtaaaaa cgtgcatctt cggtagcaag aatcgctttt actaacatcg
     2461 gtggaatatc atcaagcttg accggaatac ggcgttcttc tcctacttca ccaattaatt
     2521 taccatctaa ggtaaaaatc tgcataggct gctgtaactc tacatttttc agcgttgcca
     2581 catcaggcaa atcagatttg aaatgcatgt acagtaaacc accaattacc ccacctaaaa
     2641 ccaagagtga aagtaaagca ctaaatatta tttttgcgat ccgcatcgaa aaaatctctt
     2701 ttggttaatg acgaaacata aatttaaagc caatattagg tcactaagta taagctaaaa
     2761 acgcttactt cgcataacta attgcaaaac tttccttact atacttacta tgaaattact
     2821 taaagcacat tcaaaaacac cttcaaaccg tatcatctta ggcttaagtg aagatgaaca
     2881 acgttactgc ttagtcaaaa ataaagcaga aaaattcacc gttttttggc aagccaagcc
     2941 tgcgagcatc gaagagctta tcggtaatct caccccacaa gaacaagcaa tgatgacgct
     3001 ggttcgcccg atcccttacc aatacatttg gcgaaaaacc gtttttatgg ctaacaccct
     3061 caatgaagct caattacacc gtaaggtaat tcacatttta aaaaatgagc agccacttgc
     3121 attggatcta ctcaatattg actatcagcg atttccaagc agcaacgata atctggataa
     3181 agtggttatc tacgccgtgc gaaaaagtta taccgagaat ttgagccaat ttaacagcat
     3241 cttagattgt gagctgcatt gctatgcacg ggctataatt catttaacac aatcccaaaa
     3301 taatcagcct gcgccctgtt tttcatttaa acagaagtac ttccaattta ccgagacgga
     3361 attactgata ttgcaaacag aacctgagga ttgtattcat ctatctgatc tcaaaattga
     3421 ccatcttgaa atcgagtgtg agcaagagaa acagctatat tgcctcgcct taggagcaag
     3481 tttatggaat ggcaaggtat tgatttaagt gctaatcgaa aaaataactg gtttgccggc
     3541 agtgataaag gcatcaaaaa cgtgatttat acacttttat tatctgccct cattagcttg
     3601 gctctgattt ttctctattt gcaaaaaaat caagaaattc aaccgcttgc acagcaatta
     3661 gagctggtaa aaaccgatat attaaatatt gaaaataaaa ttatcagctt gaatagtaat
     3721 catacaaaca ccttgccctt tgccgagcct aaaaaaatag cacaactact ggcaataata
     3781 gataacttac cgctcaaaaa tgggggaatt gaaacgatac aaatttatct tgaaaccgat
     3841 ctctatttaa aaataatcgg taatttagat aatcaatctg attttcaaag tctagaatct
     3901 tatttatatc agcaagattt atttgaaacc aaaaccgagc aaattaatgt taatcataaa
     3961 aatgaaatcc aatttatttt cac
//
LOCUS       DANLXB010000206         3981 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLXB010000206 DANLXB010000000
VERSION     DANLXB010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(103..1461)
                     /locus_tag="PXD41_002295"
     CDS             complement(103..1461)
                     /locus_tag="PXD41_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6289784.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(1531..2358)
                     /locus_tag="PXD41_002296"
     CDS             complement(1531..2358)
                     /locus_tag="PXD41_002296"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL6289785.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(2372..3460)
                     /gene="aroB"
                     /locus_tag="PXD41_002297"
     CDS             complement(2372..3460)
                     /gene="aroB"
                     /locus_tag="PXD41_002297"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL6289786.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(3484..>3981)
                     /gene="aroK"
                     /locus_tag="PXD41_002298"
     CDS             complement(3484..>3981)
                     /gene="aroK"
                     /locus_tag="PXD41_002298"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL6289787.1"
                     /translation="LIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAGADIDWIFD
                     VEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIYLETTVDKQ
                     FERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKVVANQIIDM
                     IDNLQ"
BASE COUNT         1296 a          906 c          672 g         1107 t
ORIGIN      
        1 tgcttggtta attaagcaag aattgcaaat tccccacaaa atttaaccgc ttgtcactaa
       61 aaataaagct gtttgaaaat ccattcaaac agcttataga atttagagtg aattaaagaa
      121 aatcaccaag ataatcaccg gaatcacaaa gcgaacatag ttaaaccaaa tagtggtaaa
      181 cattttaccc gcacctaatt cctccttcgc ctcttctttt agaacaaagc caacgaaaat
      241 cgcgctacct aaggcggtta aaataaacag aatattgcca ctaatataat cgaaggcatc
      301 aaaaatgctc ttgcccataa cctgcacatc ttgcaatata ttgtcactta atgctgatgg
      361 aatattaccc aacagaaaaa tagtagccaa agtaataaaa atagcttttt gacggctaat
      421 ctttgccttc tcttgcaatg cagtgataat aacttcataa atagttaacg aggttgttaa
      481 tgccgccacc actaatagac taaaaaagat aaccgcaaaa actgttcccc cccacatatt
      541 tgagaacaca atcggcaaac tttggaatac taaagtcgga cctgaatttg gagcaacgcc
      601 aaagctaaat aatgacggaa aaatcataaa accggcaagt accgcaatta aggtgttcat
      661 caccccagta attgttgctg tttttactaa attctcgctc ttatcaaggt agcttgaaag
      721 ggttatcaac acaccaaaac caaggcttaa tgcaaaaaat acttgaccca gcacaaacac
      781 aaacaatttt ggtgtgattt ttgaaaaatc gggcatcaga taaaaggcaa tgccttcagc
      841 agcccccggt aaggtaatat ttcgaaccac catcacaatc aggaaaataa acagaatcgg
      901 catcaaatat ttcactgaac gctcaatacc gtccacaatg ccttttacca aaataaaata
      961 attcaccaat acaaaaagtg ccgtataagc aataattgtc attgggctat taaaaatact
     1021 ttgttggaag aattgttggg tcgtgccaac ggtaacaggt tgagacagat ctagtgtccc
     1081 cgtgagtaag ctaccgatat aatttaatac ccaaccacca agtaccatat agtaggcaag
     1141 aataccaaat gctccaagca agcccatata gccaagaatt ttccaacctg aggcaatttt
     1201 tttaccatta gcaaaaccgg caaaagcatc aatagcattc actctcattc ggcgaccaat
     1261 tacattctcc actaatatca tagggatacc aattacgatc atcgcaatac aaaataaaaa
     1321 cacataagca ccgcctccgt gttcccccac aagataaggg aaacgccaag ttgcaccaaa
     1381 accgactgtt gcaccagcaa cggtcataat atacgccaat cggttagacc aagattggcg
     1441 ttcttgttgt tgatttgcca tttaatactc catcggctaa caataccgct tcaaccaaca
     1501 agcggtcaga tttttagaaa atattacaaa ttaaatgaag agtgcgaata actcgccaac
     1561 tttaaccctt gagcccacct tctgccctat tgaacgctgt acctgaattt gggtaatatc
     1621 ggcagattga taaatcctac gggtaaaatc agtatcgtga tttgaaatta atacgggaac
     1681 gcctaatcct ttcatttcta aagccagtgt tgccaaacgc ccttgttgct ctaggctaaa
     1741 accaccgcca gcatattgcg taaaattcgt ttcttgtgct aaaggagcgt aaggtgggtc
     1801 gcagtaaatc acataatccg ttaattgatt ttttgccaac tcaaagacct gttcaaaatc
     1861 cgcacacaca aaagttgcct tttgtgcttt ttcagcaaaa aaacgtagtt ctttttctgg
     1921 aaaataatgg gttttataac gcccaaaggg aacattgtac ccttttttct ggttataacg
     1981 gcaaagtccg ttatagccaa atcgatttaa atacaaaaaa atcaccgagc gacgaaaaat
     2041 atcttttgag cgattaaact ccgcacggcg tgctttataa aaggcttctg tattcgcttg
     2101 tgggtgaaga aacagttgct ttgtttgcgc aatatattcc tcaacatctg ctttcaccac
     2161 gttgaaaaga ttaatcaagt caggattaat atcagcaaga atataacgtt caaaatctgt
     2221 attcagaaag accgaacctg caccaacaaa aggctcgact aaacaagcct tttttggcaa
     2281 atgggtttga atatctggaa ttaagcgata tttaccgcca gcccatttta aaaaggctcg
     2341 atgcttaggg tgattcattt cattttaaac attaacgttg ggtaaaacgc tcaatagagg
     2401 ctaatacttg agattctgtg gcttgcgatg aaacgtaagc ttcaccaagt gatttcaata
     2461 aaattaggcg taattgacct gccagtactt ttttatctcg ccacatataa ggtagatatt
     2521 ctgccggttc cattccatca ggtgaaattg ttggcaaatt ggctcgggcc aataattttt
     2581 ccaagcgagc aacctcttga ggacttaaat cccccagaat acgagataat tccgcagcct
     2641 ctagcatacc aaccgaaaca gcctctccgt gtaaccatac accatagccc atacgtgctt
     2701 caatggcgtg accaaaggta tgtcctaagt ttagtaatgc acgatctcct ttttccgttt
     2761 catctcgagc aaccacgtca gcttttagct ggcaacaacg ctgaatacaa tattccagct
     2821 catcttgctt gagactgacc aaatcatcaa tatgcttttc aagccattca aaaaaagtaa
     2881 catcaaagat tgcaccgtat ttgatgactt ccgccaaacc agcactgact tctcttttgg
     2941 ataaggtatg gagcgtattg gtatcaacaa tcacagaaac aggctgataa aaagccccaa
     3001 tcatattttt accgagtggg tggtttactg ccgttttccc gcctactgaa gaatcaactt
     3061 gagccagtaa agtggtcgga atttgtataa aacgaatacc acgttggtaa gaggcagctg
     3121 catagcctgc aacatcaccg attacaccac cgcctaaagc aattaaagtg gtatcgcgat
     3181 tatgattttt ttctaataat gcggtaaaaa tcaaatttaa tgattctagc gttttatatt
     3241 cttcaccgtc gggaatcaat accgaatcaa cgtggcaacc cagctccttt aacgcatttg
     3301 ttaccacact aagataatgt gtcgccaccg ttggatttga gacaatcatc accttatctc
     3361 cagattttaa tgggctataa ctagcaggct gatttaataa ccctgcacca attataatcg
     3421 ggtaacgacg ctcttttaat tccacattga cttgtaacat atcttagctc ctttcttacc
     3481 tggctactgt aaattatcaa tcatatcaat aatttgattt gccactactt tagcgctctg
     3541 ctcgtccgta tgaatagtaa tatctgcaat ttcttcatac aatgggttac ggattttcgc
     3601 taactcttcc aacgttttac gggggtcttc tgtttgcaat aaagggcgtt ttttatctcg
     3661 ctgagtacgt tcaaactgtt tatccactgt cgtttctaaa taaataacga taccacgagc
     3721 cgataacaca ttacggttat ctttagataa aatcgaacca ccgccagttg aaagcacgat
     3781 accataattt tgcgtcagtt catttagaat acgttcttca cgcttacgga aaccctcttc
     3841 accttcaaca tcgaagatcc aatcaatatc cgcacctgct cgttcttcga tcacactgtc
     3901 ggaatccata aattccatac ctaatgtttg agcaagctga cgaccaatcg tacttttacc
     3961 tgctcccatc ggcccaatca a
//
LOCUS       DANLXB010000207         3950 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLXB010000207 DANLXB010000000
VERSION     DANLXB010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(334..1428)
                     /locus_tag="PXD41_002299"
     CDS             complement(334..1428)
                     /locus_tag="PXD41_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6289788.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1562..2740
                     /gene="lpxB"
                     /locus_tag="PXD41_002300"
     CDS             1562..2740
                     /gene="lpxB"
                     /locus_tag="PXD41_002300"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL6289789.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2767..3819
                     /gene="sohB"
                     /locus_tag="PXD41_002301"
     CDS             2767..3819
                     /gene="sohB"
                     /locus_tag="PXD41_002301"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL6289790.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1173 a          681 c          856 g         1240 t
ORIGIN      
        1 gactgtcaga ttaggtttga tcttctacat ataataaccc ctcatcactt tttgcagttt
       61 aacctctttt gcaacagata atttaaattt aggcgttttg gctgctcagt tattgccatt
      121 atgattatat tagttcacac taaaatttta gtgttgtttc ttaaagctga agatgctaat
      181 aggtgagtaa gcggttttta ccactttgaa gataaatgca atagcttctt gtttgaagga
      241 ttagttgtat ttaatcataa aaaatctgca ccttaatcag ttggttagcc caacttttag
      301 gtgcagatca ttctagtacg cttttcagtt ttattaccaa tatgctcgta agcctacaac
      361 agtcgtataa ttgcgagatt ttgcggtttt tacatcatta gtatagtgtt tagcacgagt
      421 tgcttgccat tcaacaaagc cttttaagtg ttttggaaca atgtaatatt ccgttcccaa
      481 cataaattgg tttcttttaa ctttgctatc atttgccaag cctacagcat taagtttgtt
      541 ttctttataa gcatacattg tgtaagcatt ccattgatcg gttaaacgat ggagtaacac
      601 agtgcgaact tctttttcga tacgtttgtg accgatagca ttttgatctt ccgtttcacg
      661 gcgttctaaa tctaagccaa gggtagtttt tccgtaggta taagctgtac cgaaggcaag
      721 agcaatgcgt tcataattgc cgatagattg ctcagaacgc tcacgggttg cacctgttgc
      781 taattttaag ctttggttat catcaatttt atagttataa attgctgctg caccccaaat
      841 atctttacgt ttattgacta aatctaagcc attgtttcca cgttggctat ttccgccata
      901 gaatgctccg agttttaatc cttcgatgcc tttgtaaaca tattgaagcg tacgtcgtga
      961 tgaaccggta agtaagccat cacttaagct gagtgtattt ggtaagtcag tttgttttac
     1021 ttcatcggca atattagtca tattgccgta tgttaattca ccgtattgtt tatgcccgat
     1081 tcctgcatag agttgatgat cataaatatg atcgaagtta tgttgtgagc ttgaatcgcc
     1141 acgcatacgc cattccacac gacctaaagc atagaatccg tgacccactt gctgggttaa
     1201 acggaaacca aaacgagagc cgttgttatc cactgcgtga ttaacgtggt tgcgggtagc
     1261 tttaccattt accggtgagg ttttatctga ggtgctttcc cacttaatac gagcagaacc
     1321 aataaattca atttgtgtac cggtttcttt atgatcgtaa atcgtaatag ctagagctga
     1381 gtttgcgatt aaggctgatg ctaaaatcgc taatgttgtt tttttcataa aaatcactcc
     1441 atatgaatag ataaagggag gtagtgtatg tgaatattca ttgctagaca ataatgtttt
     1501 gttagtttat atgatgattg gttataatag agtcacttac agatcttcaa taatatttaa
     1561 tatgaaacaa caattccccg ttattggctt agttgctggt gaggtctctg gcgatattct
     1621 tggtgccggg ttaattaagg cgttaaaagt acattacccg aatgctcgat ttatcggtgt
     1681 tgcaggctct cgaatgattg aggctggctg ccagtctttg tttgatatgg aagagctttc
     1741 tgtaatgggg ctagcagagg tggttaaaca tttacctcgt ttacttaagc gtcgtaaaca
     1801 ggttattgat gagatgctta aattgaaacc agatgtattt atcggtattg atgcaccgga
     1861 ttttaattta accgttgaag aaaaactcaa agcgagtggg attaaaacaa tccattatgt
     1921 tagcccttcg gtgtgggctt ggcgacaaaa gcgggtgttt aaaattgcca gagcagctaa
     1981 tttagtgttg gcatttctgc catttgagaa agcgttctat gataaattca atgtgccttg
     2041 tcgttttatc gggcatacga tggcagatgc gatcccactc gaaccaaatc gtacagaggc
     2101 atgtttagcg ttaaatattg atgaatccaa gcgatatatg gcaattttgg tgggaagccg
     2161 tggcagtgaa attcagtttt tggctgagcc ttttttgaag gctgctcagt tgttaaaagc
     2221 ccgttttccg gatttacagt ttttagtgcc aatggtcagc caaaagcgaa tggagcaatt
     2281 taatgcaatt aaacagcaag tagctcccga gttggaactg aatattattc aaggcaaggc
     2341 tcgtcaggct atgattgcgt cagaatgtac tcttttggca tcgggaacag cagcactaga
     2401 ggcaatgttg tgcaaatctc cgatggtagt tggttataga atgaaaccgc tgacttattg
     2461 gttagcaaaa aaattagtga aaaccgatta tatctcctta ccgaatttat tggctcaagc
     2521 cccattggta ccagaattga tccaagaagc atgcaacccg gaaaatttag ctcaagagtt
     2581 atctctattt ttagctgatg atgagaaaaa ccaacaacat aaagcattgc taaaacagca
     2641 gtttatgcag ctacatcaat caattcaatg taatgctgat gagcaagctg cccaagcggt
     2701 tatcgatctc ctaaacggct cgacaagcgg tcaaatttag ttagtttttt gtaaaaagga
     2761 aaatttatgt ggaaagaagt attacttaat tatggtattt ttttattaga gttattaact
     2821 gtatttggca ttattgcagt ggtggtgatg ctgattttgg aatcgaaaaa gcagaatgaa
     2881 aacggctcaa tttcaattac caatttatct gagaaatata aagagcagca aaaatctctt
     2941 tccggctttt ttctaagtga ggaagaatta aaacatcagg aaaagcagga gaaaaaagta
     3001 gcaaaagaga aagctaaagc agaaaaaaaa cgcttaaaag caggcgaaga atgtgtagaa
     3061 agcccttccc gtttatttgt attgaatttt aatggcgata tgatggctca cgaagtaaat
     3121 tccctacgcc gtgaaattga tgcggtaatt agcctcgcga atccggaaaa agatgaagtt
     3181 ttacttaaac ttgaaagtcc gggcggagtg gtgcacggtt atggattggc tgcttcgcag
     3241 ttacaacgtt tgcgtgatcg caatatttat ttaaccgcag cggtagataa agtagctgcc
     3301 agcggtggtt atatgatggc gtgtgtggcg aataaaattg tctctgcccc atttgcggtg
     3361 attggctcag tgggggtggt ggctcaggtg ccgaatatcc accgcttact gaaaaaacac
     3421 gatattgatg tggatgtgat gactgcaggt gaatataaac gcacggtgac gctggtggga
     3481 gaaaataccg aaaaagggaa acagaaattc cagcaagaac tggaagaaac gcactctctg
     3541 tttaagcaat ttgtggctcg acaccgccca caactggata ttgagcaggt tgcaacaggc
     3601 gagcattggt ttggtcagca agcgattgag ctaaatttgg ttgatgagat tgcaaccagt
     3661 gatgatctgc tcctcaatgc aattaaggaa aaagaagtga tcgagctaaa atataaagag
     3721 aagaaaaaac ttgctcagaa attgggttct caattcgagc aatcagcaga gaacctgctc
     3781 gctaagattt tacataaaag tcgttcaacg ctgatgtagc gtatatatta ttaaagggct
     3841 atcgtttata tagcccctta ttttatcagt tagtaataga atgaagtatt tgttcactat
     3901 ttaaatgacc tggaatactt ttctttaaat tgagtgaaga atctaacaat
//
LOCUS       DANLXB010000208         3947 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLXB010000208 DANLXB010000000
VERSION     DANLXB010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3947
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            51..356
                     /gene="cyaY"
                     /locus_tag="PXD41_002302"
     CDS             51..356
                     /gene="cyaY"
                     /locus_tag="PXD41_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL6289791.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
     gene            465..2264
                     /gene="recQ"
                     /locus_tag="PXD41_002303"
     CDS             465..2264
                     /gene="recQ"
                     /locus_tag="PXD41_002303"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL6289792.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            2423..2965
                     /gene="infC"
                     /locus_tag="PXD41_002304"
     CDS             2423..2965
                     /gene="infC"
                     /locus_tag="PXD41_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL6289793.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            3229..3426
                     /gene="rpmI"
                     /locus_tag="PXD41_002305"
     CDS             3229..3426
                     /gene="rpmI"
                     /locus_tag="PXD41_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL6289794.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            3535..3888
                     /gene="rplT"
                     /locus_tag="PXD41_002306"
     CDS             3535..3888
                     /gene="rplT"
                     /locus_tag="PXD41_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL6289795.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
BASE COUNT         1288 a          779 c          794 g         1086 t
ORIGIN      
        1 aaaacaaaaa gtatttacta cttatataac attcaaataa ggatacacca atgaacacag
       61 cacaattcca ccaagccgta gagcaagtat ggcaacaaat tgaagaaaaa atttatgacg
      121 aaggattatc agtcgatact gaaatccaag gagcggtctg caccttaacc tttgatgatg
      181 aatcgcaagt tatcattaat aaacaagagg caatgctgga attatggctt gccagcaaat
      241 tgggtggttt ccactttaaa aatgtagaag gcgaatgggt aacagatgaa ggtcgctcgt
      301 tctggcaaca tttagaagaa gcttttgctc gacacggaga aagcgtttct ttctaatgcc
      361 taattgttaa ctaagacagc actcgtcttt gatgagtgct ttattttcat tttaaaagat
      421 actctcagaa gacgagtact atcataagta gcaaccaact accaatgaac accaccgcaa
      481 tttctgtttt aaataatatt tttggctatc aaaaattccg agacgggcaa gaagaagtta
      541 tcaatgccgt gttggaaaat cgtgattgcc tcgtgattat gacaacaggc ggtggcaaat
      601 ccctttgcta ccaagtgccg gctttgtgcc tagacggcat cactttggtg atttcgccgc
      661 ttatttcgtt gatgaaagac caggtggatc aacttatcac caacggcatt gaagcagctt
      721 atcttaactc cactcaaacg ctcgaagagc agcaacttgt ggaacaaaaa gccttatccg
      781 gtcaattaaa attactctat ctttcccctg aaaaggtaat gactcaaggc tttttccact
      841 ttatttcgct atgtaaaatc agctttattg cggttgatga agcccattgt gtttcccaat
      901 gggggcacga tttccgccct gaatataccc tgctaggtgg cttacgaaac actttcccga
      961 atgtgccgtt gatggcactc accgccacgg cagatctaac aacccgctcc gatattctgc
     1021 atcatttacg cttaaatagc ccacatatct atttaggcag ctttgatcgc cccaatattc
     1081 gctacaccgt gcaggaaaaa tttaaaccgc ttgaacagct cattaaattc atcagcaaac
     1141 agcaaggcaa aagcggtatt gtttactgca acagtcgcaa aaaagtggaa gaaatcaccg
     1201 agaaactctc agcccgtaaa atcagcgtga tgggctatca cgccggtatg agttttgaac
     1261 agagagaacg agtgcagaat gcctttcagc gtgatgatat tcaaattgtg gttgccacta
     1321 ttgcgtttgg tatggggatc aacaaatcca acgtacgttt tgtggtacat ttcgatttac
     1381 ctcgctctat cgaatcttac tatcaagaaa ccggacgagc cgggcgagat gatctccctt
     1441 ctgaagccgt gcttttttat gatcctagcg attatgcttg gttacaaaaa atattattgg
     1501 aagagccgga aagcgaacag agaaatatta aacagcataa attacaggca attggcgatt
     1561 tcgccgaatc acagacttgc cgccgtttag tcttactcaa ctactttggg gaacatcgcc
     1621 aagagcaatg caaaaactgc gatatttgtt tagatccacc gcaacaatac gatggcttac
     1681 ttgatgccca aaaagtgatg tcggtgattt accgcaccgg tcaaattttc ggtcagcacc
     1741 atattattgc ggtattgcga ggaatgaaca atctcaaaat tcgtgaacat caacacgatc
     1801 aactttccgt ttatggtatc ggaaaagaac aaagccaaca ttattggcaa aatgtggtgc
     1861 ggcaactgat tcatttaggg ttgattattc aaaatattgc taaccattcc gctctgcaat
     1921 taaccgaaag tgccagacca tttttgcgtg gagaaaagca acttcagctt gcattgccac
     1981 gtttaggtat atctgcgact gcatttgtgc aaaaacaagc aagtcatcgc tatgacaaag
     2041 acctattcgc acgcttacgt tttttacgca agcagatagc tgacctcgaa aatattccac
     2101 cttatatcgt ctttaacgat gccaccttgc aagaaatggc agaatttctc ccgacttcaa
     2161 aagtggaaat gttagaaatt aatggtgttg gtgaacgaaa atttgaacga tttgggcaag
     2221 catttatgag tttaatcaaa gaatatcaaa ataaccgaaa ataggcagtt aaataagggc
     2281 tttattattg cataagcact gaaaatctta tagaatccgc acgtttagct gttttttaat
     2341 cacttaaaac aagcaatcta aaatatttat acgctctcaa gcggtaaaat ttaagcaaaa
     2401 atttactaga aggaataagg ctattaaacc tgtaaaacgt gttcaatcaa atcgtgcaca
     2461 tcgtcttaat gacgaaattc gtggcgtaaa agaagttcgc ttaaccgatg aaaacggcga
     2521 acaagttggt attgtatcac ttcaagatgc tctaaataga gcagaagaag ctgaattgga
     2581 tttagtggaa atcagcccaa atgctgaacc accagtttgt cgtattatga actatggtaa
     2641 gttcatctac gaaaaagaga aagcagcaaa agaacaaaag aaaaaacaaa aagttgttca
     2701 agttaaagag atcaaattcc gtccgggaac tgatgatggc gattatcaag ttaaacttcg
     2761 tagcattatc cgtttcttag aagatgggga taaagtaaaa atcacagtgc gtttccgtgg
     2821 tcgtgaaatg gctcaccaag aaatcggtat ggacgtttta gaacgtgtca aagcagatac
     2881 tgcagaaatt gcaatggtag agtcagcccc aggcaaattg gaaggtcgcc aagttgtgat
     2941 ggtgatcgca cctaagaaga aataatttcg ataagcacat tgttttaatg tgcttttttc
     3001 ttgataaagc ttaaattggc ttgcatagcg gttatatttt cgctaaaatt cgcaagcttt
     3061 tttgcctagc caagaaagag aaaatgctca acaggcaaac tcagcagcct gcttgacttt
     3121 ttaacgatga aaatcgtata gcggagaata agtgcttcca agtaattttg ttcacaaaat
     3181 tcgccttatt ttcataatat ctaacaaaca atgcggagtt ttttaacaat gcctaaaatt
     3241 aaaacagtac gtggtgctgc taagcgtttc aaaaaaacag cttccggcgg ttttaaacgt
     3301 aaacaatctc acttacgtca cattttgact aagaaaacca ctaaacgtaa acgtcaatta
     3361 cgtcacaaat caatggtagc gaaagctgac caagttttag tagtagcgtg cttaccatac
     3421 gcataagcct tttaggttag cgtagtgtag taaagtacgg acgtacggat agaattctta
     3481 gtaaaggtcg tgatgacgac caccaatcaa aatagacaat taggagatta aataatggct
     3541 cgtgtaaaac gtggtgttat tgcaagagca cgccataaga aagttcttaa ggctgctaaa
     3601 ggttattatg gtgcacgttc acgcgtgtat cgcgttgctt tccaagcagt agttaaagct
     3661 gctcaatatg cttaccgtga ccgccgtcaa cgtaaacgtc aattccgtca attatggatt
     3721 gctcgtatta acgcagcagc tcgtcaaaac ggtttatctt acagcaaatt catcaacggc
     3781 ttgaaaaaag catctgttga aatcgaccgt aagatcttag ctgacatcgc agtatttgac
     3841 aaagttgctt tcgcagcttt agttgaaaaa gcaaaatctg ctctttaatt ttaaagaata
     3901 gaaatgagga cgcctagtgc gtcctttttt atggataaaa taatctt
//
LOCUS       DANLXB010000209         3909 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.211, whole genome shotgun sequence.
ACCESSION   DANLXB010000209 DANLXB010000000
VERSION     DANLXB010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            63..1526
                     /locus_tag="PXD41_002307"
     CDS             63..1526
                     /locus_tag="PXD41_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6289796.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            1516..1821
                     /locus_tag="PXD41_002308"
     CDS             1516..1821
                     /locus_tag="PXD41_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL6289797.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            1821..2270
                     /gene="nrdR"
                     /locus_tag="PXD41_002309"
     CDS             1821..2270
                     /gene="nrdR"
                     /locus_tag="PXD41_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL6289798.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(2344..2526)
                     /locus_tag="PXD41_002310"
     CDS             complement(2344..2526)
                     /locus_tag="PXD41_002310"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6289799.1"
                     /translation="MALLADSTVDRLVAENGLVEVLGETENPKFDLTMIYAAHRYPSS
                     IVRAFVGFVLEQVKAN"
     gene            complement(2495..3205)
                     /locus_tag="PXD41_002311"
     CDS             complement(2495..3205)
                     /locus_tag="PXD41_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6289800.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            complement(3202..>3909)
                     /locus_tag="PXD41_002312"
     CDS             complement(3202..>3909)
                     /locus_tag="PXD41_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289801.1"
                     /translation="TINDEQWLVLERHDDFRELAKFGQKETYDRQMWLQIRSYLVKES
                     QFSKAKNWLAQQDFMERWMPEGNEHYGMNIHQFFAENTLNEWQEIYRHRENKSPSFKV
                     IPSVDSHTWESTYGNDGISFYAPIPMLYHGMKMKNAIKDGYWVDLQNNLVCFNPEINE
                     KFQNSLLVKKDKFLDFLKEHKLKLVWTVLGEKHAYKESKFLQELSGVYYLYGKNQQVQ
                     GSIKHFIQEIEHWGEKQ"
BASE COUNT         1196 a          786 c          809 g         1118 t
ORIGIN      
        1 caatttaatt aaaattccga tacactatgt acatcaatac gtcattatag caagagaaaa
       61 atatggcaga atatagcgga acaacccaag agaagatgaa agataagcag gttgagcaaa
      121 ttaatatctc accacattcg attgaggcag agcaagcggt gcttggtggc attatgctca
      181 gtaatgatca ctgggataat gttgctgagc gtgtacaacc gcacgatttt tacaactatg
      241 cgcatcgaat tatttttgaa caaatggcgg agttggtgcg ccacaataaa ccgattgata
      301 ttattacgct ggatcaagcc ttaaaagaca aaggggtgct gcaagatgta ggaggttttg
      361 cctatttagc cgagctttct aaaaataccc cgagtgcagc aaatatttta gcctatgcgg
      421 atattgtgcg agatcgttcc gatttaagaa gtgtaatcag tgccggcaat caaattgcgg
      481 aaatgggcta caaaacgaaa gggcgtaact ccaaagaagt gttagacgag gcagagcgaa
      541 ttgtgtttga aattgcagaa aaacgcaata acgccaatga aggtccacaa cgtattgacg
      601 atattttgct taaaacactc gctcgaatgg atacgctatc taaaaatcgc cataacggcg
      661 gagttactgg tgtttctacc gggtttgttg atctcaataa aaaaaccgca gggttacagc
      721 cttcggattt aatcattgtg gcagcccgtc cttcaatggg gaaaactact tttgcaatga
      781 acttatgtga aaatgcctca ttagtggata ttgaagataa agatgattta gacgaacagg
      841 gtaatccgaa gaaaaaaccg gcaaagccag tgctaatttt cagcctggag atgccggcag
      901 accaaattat gatgcgtatg cttgcctcac tttctcgggt cgatcaaacc aagatccgaa
      961 ccggtcagat ttcagatgat gaagacactg ctaaaatctc cagcacaatg gcaattttac
     1021 aagaacgtaa taatatctat attgatgata gctccggttt aacaccgacc gaattacgtt
     1081 ctcgagcgag acggatttat cgtgaaaatg gcggattaag cttgattatg gtggactatc
     1141 tccaattaat gcgagcgccg ggatttgcag ataatcgtac tttagaaatc gcagaaattt
     1201 cccgttcttt aaaggcacta gcgaaagaat tagaagtgcc agtagtcgct ctttctcagc
     1261 taaaccggag tttggaacaa cgtgccgata aacgtccggt aaactcggat ttgcgtgagt
     1321 caggttctat tgagcaagat gcagacttaa ttatgtttat ttatcgtgat gaggtctata
     1381 acgacaattc cgatctgaaa ggcattgcgg aaattattat cggaaaacaa cgtaacggcc
     1441 cgattggtcg ggtgcgttta acgttccaag ggcagtattc ccgttttgat aattacacag
     1501 gagggcatta tgatgatgaa tactaaacca acccagccaa tcacactttg tgcgatttat
     1561 cgcagtaagg caaaagaagg aatgtattta tatgtgccta agcgtgacca atttgagcaa
     1621 gtgccggaaa cattacgcca gttatttggt aagcctgaat ttgtgatgat gtttaattta
     1681 accggtgaaa agccattggt gcgtgctaaa aacgaagaag tgttacaatt acttatagag
     1741 caaggctact atttgcaaat gccacctccg ccggagaatt tgcataaagc ctttatcgca
     1801 caacagaaag gggaaaaata atgcgctgcc cattttgttc cactgaagaa actaaagtga
     1861 tcgattcacg gcttgcagca agcggttatc aaattcgccg ccgccgtgaa tgtataagct
     1921 gtaaagaacg ttttactacc tttgaatcgg ccgaattagt tgtgccttat gtgatcaaaa
     1981 ataatggtag ccgagagccg tttgatgccg aaaaattaag aacagggtta agacgtgcat
     2041 taaataaacg ccctgtcagt gctgatgatg tcgaaaaagc aattagccaa atcattattc
     2101 agctgcaagc gatgggcgaa cgagaagtgc cgagtcgcca tatcggtaca ttggcaatga
     2161 acgcacttaa acaattagac aaagtagcat atatccgctt tgcctctatt tatttaagct
     2221 ttagtgatat tgaagagttc attaaagaaa ttgaaaaatt aaaagagtag ttgcaaaaaa
     2281 acataaaaaa atgaccgctt gtgagtttaa aatccacaag cggtcatttt tctttaaaaa
     2341 tactcaatta gcttttactt gttccaacac aaaccctaca aacgcccgca caatgctaga
     2401 cggataacga tgggcggcat aaatcatcgt caaatcaaat ttggggtttt ctgtctcacc
     2461 caagacttcc accaagccat tttctgccac caatctatcc accgtgctgt cggcaagcag
     2521 agccactgct ttttgccata tattcaatgg catagctgtc attgctggaa aaaagatagg
     2581 gaatttctac cgcttgtctg ccagtgccta gcgtgatgac gcttgcttca ttttttgccc
     2641 aagcggcaat ggggaaattt ttcaaatctt tgacggtgct gggcgtgcca aagcgtgcca
     2701 aaaatttagg gtgtgccacc catttactgc cgatttgccc cacttttttg gcgataaact
     2761 gttcgccgtg tagttgccca atccgaaacg ccacatcaat gccatctgcc gacaaatcca
     2821 aaagacggtc ggtcagcgtg caatgcactt gtacttgtgg ataagctgcc tgaaaatcag
     2881 ctatccacgc caaaacaggc tcgcaggcag ggcttgccga caggcgtaat ttacccttta
     2941 aattgccttg ctcttcaaac aacacttctt tggcagtggc aagctgttca atggacaaat
     3001 gcacctgttc atacaggcgt tgccctgcca ttgtgggttt aacgcctgat ttttggcggt
     3061 caaagagttg aatgttaagc tctttttcca aatcggcaat ttgacggcta atggttgcaa
     3121 tcggcacatt gagtcgctcg gaggctttgg agagactgcc gtgctggata acggcgacaa
     3181 agaggcggag ggtgttgagg ttcattgttt ttctccccaa tgttcaattt cttgaataaa
     3241 atgtttaata ctgccttgga cttgttgatt tttaccatat agataataaa cgcctgaaag
     3301 ttcttgtaaa aatttacttt ctttataagc gtgtttttca cccaacacag tccaaactaa
     3361 ctttaactta tgctctttta aaaaatccaa aaatttgtct tttttaacca gtaagctatt
     3421 ttgaaatttt tcatttatct ctggattaaa gcaaaccaaa ttattttgta aatcaaccca
     3481 ataaccatct ttaatcgcat ttttcatttt cattccgtga taaagcatag gaattggcgc
     3541 ataaaatgaa atgccgtcat tgccataagt agattcccaa gtgtgagaat cgacactagg
     3601 tattacctta aatgaaggcg atttattttc cctatgtcga taaatttctt gccactcatt
     3661 taatgtattt tcggcaaaaa attgatgaat attcattcca tagtgttcat taccttctgg
     3721 catccatctt tccataaaat cttgttgtgc caaccaattt tttgcttttg aaaattgaga
     3781 ttctttaact aaataacttc taatttgtaa ccacatttgc ctatcataag tttctttttg
     3841 cccaaatttt gctaattcac gaaaatcatc gtgtctttct agaacaagcc actgttcatc
     3901 attaatcgt
//
LOCUS       DANLXB010000210         3893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLXB010000210 DANLXB010000000
VERSION     DANLXB010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            254..586
                     /locus_tag="PXD41_002313"
     CDS             254..586
                     /locus_tag="PXD41_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL6289802.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
     gene            651..1742
                     /gene="trmA"
                     /locus_tag="PXD41_002314"
     CDS             651..1742
                     /gene="trmA"
                     /locus_tag="PXD41_002314"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL6289803.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            1834..1923
                     /locus_tag="PXD41_002315"
     tRNA            1834..1923
                     /locus_tag="PXD41_002315"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1868..1870,aa:Ser,seq:tga)
     gene            2079..2450
                     /locus_tag="PXD41_002316"
     CDS             2079..2450
                     /locus_tag="PXD41_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL6289804.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(2447..3358)
                     /gene="xerC"
                     /locus_tag="PXD41_002317"
     CDS             complement(2447..3358)
                     /gene="xerC"
                     /locus_tag="PXD41_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL6289805.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(3425..3715)
                     /locus_tag="PXD41_002318"
     CDS             complement(3425..3715)
                     /locus_tag="PXD41_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL6289806.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
BASE COUNT         1169 a          847 c          741 g         1136 t
ORIGIN      
        1 cacagtatat ctccaaatat taaagttaat caaaactcaa tacatttagg taatatacct
       61 taacaaatat aaaaaatata cctcagactg cattgtctat tttaaaagga tcaatatttc
      121 tccttaaaga gttttttgca aaaaatttgc caaatttgac cgctttttta cattaaggca
      181 ttgatttatt cgctgttttt gtttaatgta tgccgatttt attttcccta atttcaaaca
      241 acgaggcatt attatggcag acagtttcag cgttacgcgc cgcttttttg acgataaaaa
      301 ttatccacgt ggtttctctc gccacggcga ttacaccatt cgtgaatcac aaactttaga
      361 acaattcggt caagcttgct tggctttaga aagtggtgaa cgtaagccgg caactcaaga
      421 agaaaaacgt ttcgttgcgg taatgaaagg cgaagaggta gcagaaactg acattgaaaa
      481 agcgtggtta aaataccgca cattaactag taaaacaaaa cgcatctaca ccctttcagg
      541 caatgcaggt agcgatgccg gcgatgactt cagtgctgct gaataatttc taatttaaaa
      601 ccacgaagta attcgtggtt tgttttttca tttgctattt gtggtaaaaa atgactcttc
      661 ctatcgaaca atattccgat cttcttgcaa aaaaaaccga aaatttgacc gctttactca
      721 agccgtttaa cccgcctgcg attgaggtat ttgcctcaaa gccaagccat ttccgtatgc
      781 gggcagaatt tcgagtgtgg cacgaggaag gcgagctgta ccacattatg ttcaaccctg
      841 aaaccaaagc tcgttatcgt gtggatagct tccctattgc cagtgagctg attaaccata
      901 tgatgaccgc attattggcg gaaattaaag gcaatgaact actgactcgc aagctgttcc
      961 agatcgatta tttaagcacc ttaagcggtg aaattgcagt ctcaatgctt taccacaaaa
     1021 gcctgaatga agaatgggtt gaacaggcaa acgccttaaa aagccgttta gagcaacaag
     1081 gtttcaaagt gcaaattatc gggcgtgcca ataaacaaaa aatcgcactg gattgcgatt
     1141 atgtggaaga aattctaccg gtacacggca aaaattatgt gtatcgccaa gtggaaaaca
     1201 gctttaccca gccgaatgcg gaaatgaata ttaaaatgct ggaatgggcg agaaattgca
     1261 caaaaaatag tgaaggcgat ttgcttgagc tttactgcgg caacggcaat ttttcgattg
     1321 ccttggcgga aaacttccgc aaagtgctgg caaccgagat ctcaaaatct tcagtgcaat
     1381 cggctcaata caatattgaa aaaaatggca ttgttaacct acaaattatc cgaatgtcgg
     1441 cagaagaatt tacccaagcg atgaacggtg tgcgagcctt ttatcgctta aaagggattg
     1501 atttaaacgc ctacgaatgc aataccattt ttgttgatcc acctcgtgca gggttagatc
     1561 aagctacatt aaatatggtg caagcgtatg agcggattct ctatatctct tgcaatccgg
     1621 aaacccttgc cgagaattta caacaattaa gccaaaccca tcggattgaa aaagccgctc
     1681 tttttgacca attcccttac acccaccata ttgaaagtgg cgtttggtta attagaaaat
     1741 aaattgtgct gaaaaaaaga acgaataagc agcttttaag atttattact tgacgatgtt
     1801 cgcaataatc tctattattg caacgttttc aacggaggaa tggcagagcg gttgaatgca
     1861 ccggtcttga aaaccggcga gggttaacgc cctccgtgag ttcgaatctc acttcctccg
     1921 ccagtcttta aacctgttga gcaatcagca ggttttttta tttcatttgc aagaaaatca
     1981 gataaaacca ccgcttgaat ccatcgctat aaactggttg aaatcagcct aaagttgctt
     2041 taggataatt gcgattcatt atcaataact taattattat gaaatacctt tatattatct
     2101 gtggttttat ttgtattggt ttaggcatca tcggggcagt attaccgggc ttgccgacca
     2161 caccgttctt acttttggct ctgttctgct ttactaaagg ctcggagaga atccgccagt
     2221 ggtttattca aaccaaatta tacaaaaaat atctgcaaga atatgatgag aaacgggcaa
     2281 tgacgatgaa gcaaaaaatc acgattttag cgatttcgtt tccgtttaca ctatttgctt
     2341 tctttgcact gccccatatc ggtgggaaaa ttgcgttagt agtgttagtg ataattcaat
     2401 attggtattt cttctgcaaa atgaaaaccc ttgaaccgga gaatgcctaa tcttcctgct
     2461 tccgccttgc tcttgggtgg gcagagtcat aaattttagc taagtgttgg aaatccagat
     2521 gcgtataaat ttgagtggtg gacaggctac tatgacccaa taattcctga accgctcgca
     2581 aatcaccgct tgcctctaac atatgagtcg caaaagagtg acgtaattta tgtggatgca
     2641 gatggctttc cagcccttgt cgctcacccc atttcttcat tgccaactga atggaacgat
     2701 gagataaccg cccacctcgc ttattcagaa acaccgcatt atcttgcggc ttaaattgca
     2761 aacgcatttc taaccagcga tttaacgctt ttaacgcttg cgagccaatc ggcacaattc
     2821 gctctttgct acccttacct tgcacccgta cttctcgtgc cgataaatcc atatcgccta
     2881 aatccagccc ttgtaattcc gataaacgca agccggaact atacatcagc tccatcatcg
     2941 caatatctcg aatatcgctc ggctcatcac tctcaatcgc cagcaactgc ccgacctgct
     3001 ccgcatcaat atttttcggc aaatgcttac ctactttcgg cgatttcacc cctaaagtcg
     3061 ggtttgccga cattcgcccg attttaatca aatagacaaa ccattgccgt aacgccacca
     3121 agcgtaagcc gatacttttc gcactcaacc cttgcttatg gctttggctt aacatccaac
     3181 gcaccgagct actttcgacc tcttcccaat tttcaatgcc tgcttgcgaa aaaagctcgc
     3241 tcaccgccat taattggcgt tgataattgc ttaaggtatg cgggctaact tgcttttcaa
     3301 tgcgtaagaa atcccaatag gggcgggttt gttggaaaag agggttggaa gtggtcataa
     3361 acgtaataac aagcggttaa tttttaggaa aatgttgcaa gggcaaaaga tttgcccttt
     3421 gagattaggc tagccccaac tgaccgatac gcacgccaac attaccaagt gcaacagggc
     3481 ttaaatattc gccgagaaat tcaaacaatt cattcacatc agtaaaactg cgatgagttt
     3541 tcacttcttg ctccacttta cgagtaaatt cataatgtac attttcgccg ttaataaagg
     3601 cttccagcgt taaatatacg gtttcaaaat agtggcttgg cgagccttca aagcccggat
     3661 cactcactcg aacattccaa tgattactaa ataaaacttc ggtttttact gacattgtgt
     3721 tttccttctt cctataagta cgtacattat tttaatcaag atagattgaa tttgccactt
     3781 ttcctagtca gaatcgaggc aaatcttatt tggtttgtcc tcttatatct ttccctcaaa
     3841 atatgatctt ggtcaaaaaa tactgacttt taactcttaa taaagttaaa tat
//
LOCUS       DANLXB010000211         3843 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLXB010000211 DANLXB010000000
VERSION     DANLXB010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>3843)
                     /locus_tag="PXD41_002319"
     CDS             complement(<1..>3843)
                     /locus_tag="PXD41_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6289807.1"
                     /translation="VWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLSTLSLALS
                     AGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKVSTALGYN
                     TTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFIGDHAGLN
                     HSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKLAGPTTNV
                     TSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAYGAEANAT
                     AIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGTNAGATSD
                     YASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESSNASAFNA
                     TAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATVSIGAEGK
                     ERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTENGNITFP
                     TYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERHLGSTVKI
                     KGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGITIANGVA
                     DKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSISDDGIQRA
                     NYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADGMNATSIG
                     YNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGENSTAVGYE
                     ASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAIALGNSAN
                     AAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKSATLNGNT
                     YTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEIDGLNTKV
                     NELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANTLTVKLAK
                     DIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDISPISADAV
                     NGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNVGSAITAL
                     NDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNGSLTVKLA
                     KDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAAGTKVTNV
                     KAGTEDTDAVNFSQLKAT"
BASE COUNT         1004 a          825 c          781 g         1233 t
ORIGIN      
        1 tctgttgctt ttaattggct aaagttaact gcatcagtat cttcagttcc tgcttttacg
       61 ttagtcactt ttgttcctgc tgcattaata cctgttttag ttatactcgg tccccctaca
      121 atagttaatc cattagtatc aatggttgta tcaccagtct taacagtatc ggctacagca
      181 atgttagctg ttactgtttg agctgtgaca gaattaactt taatatcttt agctaattta
      241 accgttaatg aaccattacc atttgaaata accccgatat tattatcagt tagttgtgat
      301 tcgttagata ccccaccttt tactgtaaca gtagaaccta atttacgttg agatggcgtg
      361 ccggtatcac ctgcaaatgt tagtgggctg gttactgcat catttaacgc agtaattgca
      421 gagcctacat tattgaccgt tttactaact tcatttgtag gagcgccatc aaccacagta
      481 tagcttgggg ctgaaacagc accatttgca tttacacttg aattaccacc taaagcggta
      541 gcaatagtat ttgccgtatc gtaaagttgg ctaccattaa ctgcatctgc tgagataggt
      601 gaaatatcac catcagctac attagttatt tttaatttgc cagcatcgac acctgtcatt
      661 gtgacacttg ggccattatt aatggttaag ccgttgttat ttagttttga attaccaaca
      721 gctacggagc cggcaggagt taaatcaatg tctttcgcta atttaactgt taatgtgtta
      781 gcatctgttg ccactacacc gatattatta tcagtcaata tggttgcatc ggccccacct
      841 ttaacattca gagaagtacc taatttacga acaatttcag taccagcatc atctacaaaa
      901 gtaagtgctc cattacttaa ctcattcact ttcgtgttta aaccatcaat ttcggtataa
      961 gcagcataaa gttgtgaacc gttgatagca tccgttgatg agtccaaaat acgacctgct
     1021 gcaacattcg ttaaagtacg ttcattgcct acagaaccaa tacttacagt tgagcttggc
     1081 gtagtacctg caaatgtgta tgtattgcca tttagcgttg cactttttgt tgcaactgtg
     1141 gctactgttt cagagttagt acctaatgca acagaacctt ggtgtgttgc ttttgcattt
     1201 tggccaagag ccactgcagc agttgttgtt gcttgtgatg aaacacctaa tgcaatagaa
     1261 gctacaccgg ctgcatttgc actattacct aaagcaatcg cagagctacc tgcagcattg
     1321 gcatttctac ccacagaagt tgaccatatt ccacctgcat tagcagagtt acctaaagcg
     1381 gttgactgtg tacccgaagc atttgcgtta tagcctgcag caagagaatc tgcaccgatt
     1441 gaacttgctt cataacctac agcggttgaa ttttcaccgg tagcttcaga tttagagcct
     1501 aatgcagttg cacgggtagc tgtcgctgtt gaagctgtac caatagctgt tgaggtatca
     1561 gcatttgcat tggctgcaga accaaccgcg agggcatttg ttgcatttgc attcgcattg
     1621 tagcctatag aagtggcatt cataccatca gctgttgcgc gaggaccaac tgcagttgta
     1681 cgttcaccgt ttgcttctgc ttcagagcct aatgcggttg ccagctcacc attagcactt
     1741 gttgcaacgc cgatagccat tggattaaca ccgctagagc ctgaattatc atagttagca
     1801 cgttgaatgc catcatctga aatactaaca taatgagttg caaatttgct gatagcttgt
     1861 ttgagttgac tgacattgac cgcatcagta tctacatcgc ctgcggcaac attggcgatt
     1921 ttattaccgc cattatctaa gccagattta gtaagactta ccggtttgtc tgcaacgccg
     1981 ttagcgatgg tgatacctgt attgttaaca acggtatcac ctgttgttaa tgaaccatta
     2041 gcgcctaagt taactttttc tgctaatttt atggttaaag tactattgcc atcagctaca
     2101 acaccaatat tattctcggt taatatgcct gtagatccgc ctttgatctt gactgttgaa
     2161 cctagatggc gctcaaaatt agttcctgta tcaccggcaa aggttaacgg actgatcacc
     2221 gctgtgttta atgcgcttag tgctgcagaa acagtagtgt atctcccttg tttgccttct
     2281 ttatctgcat ctggtgtgcc attcactaaa gcgtaggttg ggaaagtgat atttccattt
     2341 tcagtaacag ctgccccacc acctaagata tttgcggttg ttgcagcaac attacctata
     2401 gcttgttgtg ttaaatataa ttgtgaaccg tttatggtat ctgtagagct taaagatata
     2461 cgtcctgcag caacattggt gatagttctc tctttgcctt ccgccccaat acttactgta
     2521 gcaattggat ttgttccagc aaagtcacta tatgtaatac catttacagt tgcatttgta
     2581 gttggtatgg ctatagctgt aactgagttg ctacctagcg ctatcgaatc ggtatgttca
     2641 gcagtggcat ttcgacctat agcggttgca ttaaaggcgg aagcatttga tgattctccg
     2701 attgcaattg tgcgttgatt tgttgcttta gcgcttaccc ctagtgcaac agaagccgcg
     2761 cctgatgcag tagcacgatt gcctaaagcg gttgcagaac ctccacttgc attggcttca
     2821 cgaccaaatg cagaagcata atcgctggtt gcacccgcat tagtaccaac agcagtagtt
     2881 aaatttgctg ttgcatttgc ataataacct aatgaggttg caccgtggcc tgaagtcttc
     2941 gcttcataac caattgctgt tgagttatcg ccatttgctt gagattttgc accaattgct
     3001 gtggagtgaa tagctgttgc gttagcttca gcaccatagg cggagctaac aataccagtt
     3061 gcattggcat gactacctac agcagttgct tttcctatta ccgtttctcc tgttgctgct
     3121 gtagttttgt aattattaac accatttgca agagcggaat taccgatggc gatattatca
     3181 tcactggtta catttgtagt aggtcctgct agttttgcat tagcataagt accaattgca
     3241 atattgtggc taccactagt accgtctcca gcagtattac caatagaaat cgtattgttt
     3301 cctgttacat tagagctagc cgaataacca ataccaatat tgtattctgt gctgttagag
     3361 tgatttaatc cggcatgatc gccaataaaa acttcacgta agcccattgc ggttgcattg
     3421 taccctactg ctacggaacg tttatcggca gtggcttgcc caccaacagc tgttgaagca
     3481 aaactagcgt tagcaaagcc tcctaatgca gttgaaaaat cggctgtcgc ggttgtgtta
     3541 taccctaatg ctgtagaaac tttaccgcta tttccttcta agcctgttat tgtgcttact
     3601 agtgttgagt taactttaga tccatcacca attgcgatag atgtttgtgg gttattatct
     3661 ggtatggtcc cataggttgg tgaataggtt gcagcacttg caaaacctgc agaaagcgca
     3721 agacttagtg tgctgagttt aataatatta gtggttagtg atgtatttgt tgcattagat
     3781 ttattagcac ttcttgataa ttcagaagca acaatccaag ttcgttttgc atggttccaa
     3841 aca
//
LOCUS       DANLXB010000212         3799 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLXB010000212 DANLXB010000000
VERSION     DANLXB010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3799
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            17..811
                     /locus_tag="PXD41_002320"
     CDS             17..811
                     /locus_tag="PXD41_002320"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL6289808.1"
                     /translation="MRLIPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGT
                     PEKTYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLE
                     NINILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIK
                     TLTEDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEG
                     AVNHLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            892..2034
                     /gene="nagA"
                     /locus_tag="PXD41_002321"
     CDS             892..2034
                     /gene="nagA"
                     /locus_tag="PXD41_002321"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL6289809.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2116..2430
                     /locus_tag="PXD41_002322"
     CDS             2116..2430
                     /locus_tag="PXD41_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL6289810.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2509..3699)
                     /locus_tag="PXD41_002323"
     CDS             complement(2509..3699)
                     /locus_tag="PXD41_002323"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL6289811.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
BASE COUNT         1094 a          732 c          860 g         1113 t
ORIGIN      
        1 tatttaagga gagactatgc gtttaattcc gttagaaact gatcacgatg tgagtgtttg
       61 ggctgctcgt tatattgttg atcgtatcaa tgcattccaa ccaaccaaag aaaaaccttt
      121 tgtgcttggc ttaccaaccg gcggtacgcc tgaaaaaacc tataaagaat taattaaatt
      181 atatcaagct ggtgaagtga gctttaaaaa tgtggtgact ttcaatatgg acgaatacgt
      241 cggcttacct aaggaacacc ctgaaagcta ccacagtttt atgttcaagc acttttttga
      301 ccacgttgat attccgcttg agaatatcaa tatcctcaac ggtatggcgg aagacgtgaa
      361 tgcagaatgc gaacgttatg aagaaaaaat ccgtttttat ggtaaaatcc atctgtttat
      421 gggtggggtc ggtgtggatg ggcatattgc gtttaatgag cctgcatctt cgctttcttc
      481 ccgcactcga attaaaacgc ttaccgaaga tactcgcatt gcaaactcac gtttctttaa
      541 caatgacgta agccaagtgc cgaaatttgc tttaaccgtt ggggttggta cgttgcttga
      601 tgccgaagaa gtgatgatct tagtgaccgg ccataacaaa gccttagcat tacaggcgtg
      661 tgtggaaggg gcggtaaatc atctttggac catcagttgc ttacaattac atcgccgtgg
      721 tatagtggtg tgtgatgagc cggcaaccca agagctgaaa gttaaaacag ttaagtattt
      781 caaagagtta gagaaaaacg tagctcgcta attctgattt tacaagcggt taattttgta
      841 atatttttta caaaaacgac cgcctgttag catttaaaga gaagagagaa aatgaaccat
      901 tatgccttaa caaactgtgt gatttacacc ggtgaacaag tgctttacca acacgcatta
      961 gtggtgaaag aagataaaat cgactccatt gttttggaag aaaatttacc gctggatctg
     1021 caaaaaatcg acctaaaagg agcgaatctt tcagccggtt ttattgactt gcaactgaac
     1081 ggctgcggtg gggtgatgtt taatgaagaa atcactaccc gcactttaga aattatgcag
     1141 gaaaccaatc tgcgttcagg cacaaccagc tatttaccga cttttattac ctcgcctgat
     1201 gagggagtga aacaagcggt ggcggtaatg cgtgagtatt tgtcgaaaca caaaaaccaa
     1261 gcactcggct tgcatttgga aggaccttat ctaagtgtgg caaagaaagg agtacaccgt
     1321 ccggaattta tccgtgaaat cagccctgaa atgttagatt tcttatgcga taacggcgat
     1381 gtaattacga aaatcacgat tgcagcagaa aacccgaccg cagaccatat caaacgcttt
     1441 aatgatgcag gaattattgt atctatcggg cattccaatg ccacttttgc tcaaaccaaa
     1501 cagcgaattg ccgaaggggc agcgtttgct acgcatttac acaatgcaat gtcgccggtc
     1561 agcaacgggc gtgaaggcgg tgtagtaggg gcggtgttgg atagcgatat ttacaccggc
     1621 attatttgcg atggcttgca cgttgaatgg ggcaacattc gcattgccaa aaaagccaaa
     1681 ggcgataaat tagtgattgt cagcgatgct gttgctgccg caggaagtga tattgagtcg
     1741 tttatttttg tcggtaaaaa agtcacggtg aaagatggca aatgctacga tgaattcgga
     1801 gcattgggcg gtgcggcaat cacgatgatc gaatccattc gcaacgtagt gcaacattgc
     1861 gatattagcc tgaatgaagc aatccgaatg agtacccttt acccggcaaa agcgattggg
     1921 gtagaggaaa cactcggctc acttgaagcc ggcaaaattg ccaaccttgc gattttcgat
     1981 aatcaatttg aagtaaaagc gactgctgta aacgggcaat tacagtggca ttaattttgc
     2041 tacaaattct aagcataaca gcatataatc caaaggcagg cattgtgtct gccttttatt
     2101 tatagggaga ataacatgca atttaaagat tacttagcca cttttccaac tattgatcat
     2161 ctagccggct taaacgtgat aaatagcggt gaagtgattc aacatattcc tgcgattgaa
     2221 ggtaaattag gttcactaaa actttacaat gcactgtttg cgaaatttga tgggaaatta
     2281 accgctagtg cagcaaaaca agggttggaa tggtttgccg aacacgttga agatgcgaaa
     2341 aataatgtgg gtaagcaccc gaatattgat ctattattta gggtaattga gcaagattta
     2401 tctttaagtt tagagccgat tgttaaataa gattgcacta gtgaaaaata acaagcggtc
     2461 attatctgca aaatttttgc aaataatgac tgcttgtgtt taagaggctt atttcacggt
     2521 aatgcgtgca aatttgcgtt tgccgacttg gtaaacaaaa gtgccttttt gagcagtttg
     2581 tttcacatct tccacttttt caccatcaat tttaaccccg ccttgttggg ctgagcgaat
     2641 tgcctctgaa gtggacggta ctaagccggc ttctttcagt agagccgcta ggccgatttc
     2701 accctcaaag gtaaattcag gcacttcatc aggaattgcc cctttttgga aacggttgat
     2761 aaactcttgc tctgctgcat ctgctgccgc ttcatcgtgg aaacgagcga taatttcttt
     2821 tgccagtaga attttcacat cacgcgggtt tttgccattt tcaacatccg cttttaattg
     2881 tgcaatttcg tctaatggac ggaatgagag caggttgtac caatcccaca ttaaatcgtc
     2941 tgaaatcgac ataattttgc cgaacatttc gcttggagct tcagttacac caatgtagtt
     3001 gccgagagat ttcgacattt ttttctcgcc gtctaagccg acaagtagtg ggagtgtcat
     3061 tgccacttgt ggtttttgac cggctgattt ttgtaactca cgtccaacta acaagttaaa
     3121 ggtttggtct gtaccaccta attccacgtc agctttcagt tctaccgagt cgtgaccttg
     3181 tagtagcgga taaataaatt cgtggattgc gatcggttgt tggttcgtga aacggttttt
     3241 gaaatcttca cgttctaaca ttcgagcaac ggtgtagttg gaggctaagc ggatcatacc
     3301 ttccgtacct aacttgccta accattcgga gttgaatacg atcttggttt tttgtggatc
     3361 taaaattttg aagatctgct ctttataggt ttcggcattg cgtaacacgt cttcacggct
     3421 aagtggcgga cgggtagagt tttttcctga tggatcgcct accataccgg tgaaatcacc
     3481 gattaagaaa tagacttcgt gtccgaattg ttggaattga cgaagtttgt tcagcacaac
     3541 agtatgacct aagtgaatat ccggtgcagt tgggtctgcc cctaatttaa tacgcaatgg
     3601 gcggttttct tttaatttgg tgattaaatc ttcttctgaa taaatatttt ccacgccacg
     3661 tttaagttcg gcaaggactg attcgatagc ttgagtcatt tatcttcctt ttagtcttga
     3721 atataaaaaa tggatctatt atagcggtat gaattgaaat tgataggcta taggcgaaaa
     3781 aaaacgccgt attttgtgg
//
LOCUS       DANLXB010000213         3788 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLXB010000213 DANLXB010000000
VERSION     DANLXB010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            33..410
                     /locus_tag="PXD41_002324"
     CDS             33..410
                     /locus_tag="PXD41_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289812.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            410..754
                     /locus_tag="PXD41_002325"
     CDS             410..754
                     /locus_tag="PXD41_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289813.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            756..1124
                     /locus_tag="PXD41_002326"
     CDS             756..1124
                     /locus_tag="PXD41_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6289814.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            1121..1501
                     /locus_tag="PXD41_002327"
     CDS             1121..1501
                     /locus_tag="PXD41_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289815.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            1505..1987
                     /locus_tag="PXD41_002328"
     CDS             1505..1987
                     /locus_tag="PXD41_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289816.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(2027..2443)
                     /locus_tag="PXD41_002329"
     CDS             complement(2027..2443)
                     /locus_tag="PXD41_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6289817.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(2499..2675)
                     /locus_tag="PXD41_002330"
     CDS             complement(2499..2675)
                     /locus_tag="PXD41_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6289818.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            2771..3442
                     /locus_tag="PXD41_002331"
     CDS             2771..3442
                     /locus_tag="PXD41_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289819.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(3457..3690)
                     /locus_tag="PXD41_002332"
     CDS             complement(3457..3690)
                     /locus_tag="PXD41_002332"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289820.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
BASE COUNT         1105 a          770 c          848 g         1065 t
ORIGIN      
        1 cagaaaggca aaaaagataa aggcaaataa ctatggcagc agaaatagag ctatccgaag
       61 cgcgaacaac gcttgacgaa ctgggtttca cttcgccgaa ctctctgctt gagctttacg
      121 ttcagcaaac gaacacctta gaccaggcgt tgaacaaatc ggggtacagc gaagaaacac
      181 agaaactgat caagctctat ctggttgcta ttcttgcaat ttcatctggg gcgcgccgta
      241 taaagtcaga aggtgcgcct agcggtgcaa gccgaacgtt tgagtatgat ccaaacgcgc
      301 tagacaacct taagtcggcg attcgctcaa ttgatccgaa aggttgcgct gaaagtttgc
      361 tacccaaaga taaagttgtc ggctttttcg atgtggtcgg aggctgctaa tgtcaaattt
      421 atcgaattgg tcctacaccg caaaagccac gctttggcag gctaaaggaa agaacgatga
      481 cggcgtttta gttttttcta cgccacaaat catttcctgt gactacggtg cagatagaaa
      541 gcgcgcacgt tttgagattg ggcgtgaaca agcggtcaaa aatgtgatct ggacggagtt
      601 cgcccacgcc aaattaggcg attatgttct gattggcgaa agcgagcaag ccgatccgat
      661 tttggctggc gcagaggaaa ttattcatat acagcgcttt gctgatacgt tcgaccgcaa
      721 tcgtgatgat tttgcgctga taacaggcgg gtaaaatggg gatcaaagta aaaggcataa
      781 gacaggtcaa gcagcggctg aatcaggttg ttggcgaggt tcagagccaa aaagcaactc
      841 gggcaatgtt tcgcattttg aatgcggttg cccctcttgc ggcgcactat acgcctgttg
      901 atacctcaac gttgatcaac agtcaattca ctgaaatgga agtgaacggc acacgcttga
      961 ttggaagagt gggttattct gctaattatg cggcttacgt tcacgatcct aatatcaagc
     1021 aaaacttccg caagccttca gcgaagaaag agtttttgac ttccgcgctg aacgaatcaa
     1081 aggctacgat caaatccatt gttaaagagg agttgtcact atgatttctt atgtcaaagc
     1141 cttcaaacaa tggttagagg ctcactctct tgcagacggc tatgttgtgc agctttacca
     1201 gtgggaggat acgcaaaaag ccaagcctgt tattgttatt cagccaaata gtggttcgcc
     1261 gcaagtttct gacctgagca gcgaacacta tctgctaatt agccttgttg caggtaaaaa
     1321 ttcaggttac acaatcgaag agcgagcaag ggcgattatg tcaaagattt tagttgagcc
     1381 tttcgcttcc tttggttaca tcgaatcaat gggcggatta cccgccccaa ttttcaccga
     1441 agataatcga atgatttttc gcttaccact tcggattatt tcaacaaatc aagaggagta
     1501 gtttatgggt tctccatctc cacaaaataa cgcagaaaat ctcgtggtgg ggcgtgccgt
     1561 agttttagag tacggtacga ctgatgcaaa gccacaagaa agcgaatgga aggttgcggg
     1621 cgcaatgacg acaaagagtt gggattttag cccaaattcg gttacatcag aggctgatga
     1681 tgctggcggc ttccctgaaa ccttaattac aaactcagac tttagtattt ctggtgacgg
     1741 tgagtggcgc aaacgaccaa aatcgaaaga actaggcatc aaagatctag ttgtgttata
     1801 cgcaaatgcg gtaaaaaatc gcacccaacc ttacatttgg gttcgtttga aatacgcagg
     1861 cttaacaatt ctcggaaaaa tggttatcac tgcattaagt agcgaagccc caaccaatga
     1921 cttagtgaaa ttctctatag agttcaaggt tggcgattca agcactatcg aaattgctgc
     1981 agcgtaaaaa atcccaccct ctataacaag agcggtggga ttatcattat cctagggata
     2041 gttgtagggg ctttcctaag ctagccaaaa tacgaccaat agtgtcgatt tttgtaatat
     2101 ggcgaggggc taaaattcgc tgtacttctg gcggacggat attagttaat cgggcaattt
     2161 ctgccttgct taccgcttgt tcttgcattg tattatgcaa aagcactttt gcgtagatgc
     2221 tctctggcat aaacacaggc acttcgtcgg tatttactgg gcgagtgagc ggaaagcgtc
     2281 tatcttcatc gaaataaatt tcaacacaag atagtagcac gtcttctgcc atttccattg
     2341 cttcttcaaa tgtatcgcct tgggtgatag cttctggcaa atcaggaaat gtcactacaa
     2401 agcccccttc ttcagcgggg gtaaataacg ctggataaaa catattttct ccttattcaa
     2461 gggtgtagtg aaagcccctt aacatcaggg gctttatatt attttaagcc tagttgcttt
     2521 ttaacccctt ccactaagcc tgtttttaac tcttggcttg ggtgtttggg gaggtggctt
     2581 cttttgccct tgtagtagag tttcaaatgc tttgatccat tttcaacctc taccccatta
     2641 gcctttagcc accttaggaa ttcgctttgc ttcactacct cctcctattt gtttaacttg
     2701 ggttcattat atgcaaaaat gctaactttg tcaacagaaa gttagcaaaa atgctaattt
     2761 ttttgttgag gtgaaaatgg ttagctatcc aattactgaa attggtgaaa tgcttattgc
     2821 aaccgatggg cgagactttt tattcagacc gagtttcaaa aatatctaca aaattggaag
     2881 cccacaagaa attgtaaaaa tctatgcact attgcacggc tgtgagattc gagagatatt
     2941 gccgcacatt ttaaccaaat cggagtctca tcaatcttac ttttggtcag tgctgaattc
     3001 gcctgttttt ggcagaaaaa ttctgcaaaa cgcaatgatc gtgatgtcgt gctgttgcga
     3061 tgatgatatt tccctgttga ttggcgagtg gttgccgtca aagtctggcg ttaggtacaa
     3121 gttgggtaaa atgccacctg agacaattat caattttgca aaaaatttaa tgggtcacgg
     3181 agtgattggt tgctgcgaat tgccaaagaa agaacaatct gcaaaaaatg aattttcaga
     3241 aagttttgat gctgttgagt acataagttt agcccgaact catttcaata tgagccgcga
     3301 agacgctgaa aatctcacga tgaccgaatt gcagcaactt ctaaaaagtc aaatgcctgc
     3361 cgaaaataat agctatggac agttcaccga agaagagtac gacagaatta tggcggaata
     3421 tgagaaaaga agagcggctt aaatagccgc taacatttaa aagaacctac ctgatagaac
     3481 gggagtgaaa tccttgtaat gtgctgaata aaaaagctct cttatgtcat tgagtagctc
     3541 aaattcatct ttggatcttg cgttgcagat tgccacatag tcatctacgc aggataaaat
     3601 acgttcaata ctgacttctt ttatccagca tacttcttgg ttttcattca gccagttggc
     3661 aaagtcttgt ttagtgcagt cttttttcat aagttctcct ttttgattat ttgcaaaaaa
     3721 aatcatatca aatcatccgt tgttatctat tggcgaaaat aatttttgcg acacagatcg
     3781 caaaaata
//
LOCUS       DANLXB010000214         3773 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLXB010000214 DANLXB010000000
VERSION     DANLXB010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            1..2023
                     /locus_tag="PXD41_002333"
                     /pseudo
     CDS             1..2023
                     /locus_tag="PXD41_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            2067..3502
                     /locus_tag="PXD41_002334"
                     /pseudo
     CDS             2067..3502
                     /locus_tag="PXD41_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
     gene            complement(3644..3773)
                     /locus_tag="PXD41_002335"
                     /pseudo
     CDS             complement(3644..3773)
                     /locus_tag="PXD41_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011625997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
BASE COUNT         1235 a          768 c          709 g         1061 t
ORIGIN      
        1 tcaagtatta gcagaaacaa cctctcaagc agaactaaat gctattgagg tcaaagagaa
       61 attggcagct accaccggct atattcctgt ttatacgact gtaggaacga aaacattaac
      121 ctctttggct cgtacacctt ttagtatcaa tgttgtctct gatgatttaa tgcatgacca
      181 agctgttcgt tctgttaccg attcagtggc ttatacctcc ggtatgatgg gtggctatcg
      241 tggtaacaat tcgcttatcg aaatctccat tcgaggcatt ggcaataaaa gtgatggcag
      301 tacaattccg acctatttaa acggttctcg ctaccaaact gcatttgaaa tcgatccgtt
      361 cttcttagaa agtatcaatg tgattaaagg tccaaactcc attttatacg ggcaagctaa
      421 tcccggtggc gtaatggata ttatcaccaa aaaagccggc agtaacccac atcgccattt
      481 gcaatttgtg gtgggaaacc atcaacgata ccaaatcggg ctggatattg aagaaaatct
      541 ctccaatacc ttatccgctc gtttaatcgg tcaattagaa cgaacaaact ggaataccta
      601 atttgtaaaa gaaaaaggcg gtgcttttgc tccaagcatt ttatggaaac cgactacaaa
      661 tacagaactt aatgtttacg cttactatgc aaaaaaaccg aaagccggtg atcgtaactt
      721 tttaccgaaa gaaggaacga ttaatagcgt aaacgggaag gaactaccct atgatatgtt
      781 cctcagcgat ctgaactatc acggtttaaa agccgaacaa atgcaagtag gttacagttt
      841 ctcacataaa tttacgccaa acctaacgtt ccgccaaaat gcaagttacc ataatggcga
      901 agagaatttc aaaaatctag tttattgggg cgatgtcggt tcggttttag aacgtagagc
      961 tcgccattgg gatgtcaaaa cccaagaaat caacttagat aaccaattag aatgggtatt
     1021 tagcacagca aatataaatc ataccttgtt agccggtatt gattataaac gagtgcgtaa
     1081 agatcttgat aactatatgg ggattgcccc tgattttgat tggcagaacc ctgtttatgg
     1141 cgtgaccgtt actgagccta gcttattttc aagtgaagtg aagcatttaa aacaacttgg
     1201 ggtttatcta caagatcaaa tagaaatcgg taattttgac ttcctgttag gcggtcgtta
     1261 cgatcgagca aaaaacagca accaagatcg tttgaacagt aaaacagaga ataaccaaga
     1321 aggaaaattt acttggcgta caggcgtagt ttacaacttt gaaaacggta tcgctccgta
     1381 tatcagctac agcacttctt ttgtgccatc ggctgaaaaa gatgctcaag gaaatttctt
     1441 aaaaccaaca actgctgggc aatgggaagt gggaatgaaa taccaaccta cccaagacac
     1501 cttactgacc ttagcaggat ttaaaattac acaaaaagat ttagccaatt atcaatggca
     1561 aacccgctct tatgagcaaa ttggtgaagt gcaaaccaaa ggaattgaag tgagtttaaa
     1621 tcagcaatta tccgataaat tttcaatagc ggcttcttat gcttacttaa aaaaagagat
     1681 tactgcagat aaagatggca cgacgattgg aaaaacgcag tggggagtgc ctcgccatca
     1741 agcatctctt tgggcaaaat ataaattctt tgataagctg accgccggtg taggtgtacg
     1801 ctatatggga acgacttttg gcgataacca aaatactttt accgtaccgg catacacact
     1861 ttacgatatg atgctagctt atgattttat gcctaactta aacttacagc tcaacgcaca
     1921 aaacctgacg aataaaaaat atgtcgcaag ctgtgccaat aatttttcct gtttctatgg
     1981 aaaagatcgc aatttaagtg caacgttaaa ctatcatttt taatctcaac agccctcaaa
     2041 tgagggctta aacttttgca aaaaatatga aaaaaacgac cgcttgtatt cttacttttt
     2101 tggtttcatc tgtgctttat gctaacaata taaccattga gcttaaacag aatgattttg
     2161 tgcaaggcaa attgattcag aaggctcaac agccactttc cttgtcgatt atttttcctg
     2221 accaaagctc tcgcctgctg gctcaaaatg tctttggtga acaagatttt atgtttaaat
     2281 cagaactaat cggcacagct actttttcta ttctagcgaa tggtgcaacc gtttcagacc
     2341 aagattttac cttaacgatt gagcggcata ttccaatctc ggcacaaatt gctccaccta
     2401 aagtaattga aaatacacag cttgaagaac tcagccaaaa aattgcaaaa aatccagaaa
     2461 aacagaccgc tttaattaac gatttttggg ataaagcaaa acaagccggc acaccattga
     2521 ttgaaccatt ggacgaacag caaagccgtg taactttttt atggcgtgga gcaacgaaaa
     2581 atgcccgtat ttggggcggt gtgagtactg aacacgattt tatgcaacgc tttggtgaac
     2641 ggatatatgg tataaaagtt atatagtgcc caatgacact ttagtggaat acaaattagc
     2701 tccagatgtg ccgacattgc ccgttgatga gaatacccaa cgcagagcgt tactggctac
     2761 ggctcaagcc gatccactca ataaaacagc atacttcgag aaaatcggac aaaatattca
     2821 taataccgat aaattcaact acgcttcgct acttaaattg ccaaacgcac ctactcaatc
     2881 ttttttgact gaagctccaa atattgcaaa aggtaaactg cagcagttga tttttgagag
     2941 tgcaacactc ggcaataaac acagattatt cgtctatctg cctgacggtt ttagtgcaga
     3001 aaaaaactat gcggttctct atttatttga tggtgttgaa tataccgaac gagtgccaac
     3061 taaaaccatt ttagataata tgatcgctca gaaagtgatt ctgcctactg tagcggtgtt
     3121 tatcgaaaat ccatcgagtg aatcaagacg tgtcgagctg cctgccaatc ccatatttac
     3181 gcaagtattg gcaaaagaac ttgtaccttt tgttgaaaaa cagctcaata taaaaacaaa
     3241 ggagcgaatt attggcggct ctagctatgg cgggctatcc tctgcttaca ccgtactcaa
     3301 ctatcctaat gtatttagta aagcattgat tctatccggt tcattttggt ggcaacccaa
     3361 aggcacacct agtgaacaaa gccactatat tgctcaacaa tttatccaaa aagaaaaatt
     3421 accactctgt tttttcatca gtgcaggttt ttatgaaagc gggaaatcgg ctatttgtaa
     3481 gcggtcgaat tattttgcat agaattacac tcaattttgc atagataaaa attaaaaact
     3541 atgcaaaata attgtagaag atcaaaccta atctgacagt cccccgtttt aaattaccgt
     3601 gtctgtcaga ttaatttgag cttaaattct tttccaccca aacgcgtcta ttttgattca
     3661 gcaatgcttc aacaccacct tgctcaaccg cttgttgata acgatagaat gtatctcggc
     3721 tcattcccat tactttgcag gcttgagaaa tattacccag ttcttctgct aaa
//
LOCUS       DANLXB010000215         3693 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLXB010000215 DANLXB010000000
VERSION     DANLXB010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            34..933
                     /locus_tag="PXD41_002336"
     CDS             34..933
                     /locus_tag="PXD41_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6289821.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            1027..1995
                     /locus_tag="PXD41_002337"
     CDS             1027..1995
                     /locus_tag="PXD41_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6289822.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            2048..2924
                     /locus_tag="PXD41_002338"
                     /pseudo
     CDS             2048..2924
                     /locus_tag="PXD41_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            2944..>3693
                     /locus_tag="PXD41_002339"
     CDS             2944..>3693
                     /locus_tag="PXD41_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6289823.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIH"
BASE COUNT         1045 a          705 c          747 g         1196 t
ORIGIN      
        1 gagaattatt ttcaatataa atggagttat ccaatgatta aaaaagcctt gtttgcattg
       61 accgcaactg ctgtgtttgc tgcttctgca tttgccaaag atgttactat tccaactgca
      121 cgtggagagg ttactttcaa agaaaccccg tctaaaattg ccgtgtttga caccggaagt
      181 ttggatactt tacaagcctt aggtgtaaaa attgacggta tgcctgaatt taaggtgctt
      241 tcttatctta aaccgagtgc agacaaagcg gtgaatgtcg gtacggtatt tgagccggat
      301 ttagaagcgt taaattcttt aaatccggat ttgatcattg ttggcacacg cacagcaaaa
      361 aaatttgatg aagtcagcca aattgcgaaa accatcgaca tgacggataa tggcgataaa
      421 ttaatcgaaa gcggattaca gcgtcttgat tctttcggca aattatttaa taaagaagcg
      481 gaaaccgaaa aactaaaagc agaaattaat actttattag accaaaccaa agcagcagta
      541 aaaggtaaag gtaacggact gattatttta gtcaatggtg gcaaaatttc tgcatttggt
      601 tcaggttatc gtttaagttg gattcacgat aatttaggga ttccaatggc agattctagc
      661 attaaaaata ccggtcacgg tcagcctgtt tcgtttgaat ttatccaaaa actcaatccg
      721 gattggttgt ttgtgttaga ccgtattgcg gctatcggac aagaaggtca atcagcccaa
      781 caagtgttgg ataatgaatt agttcgtcaa actaaagctt ggaaaaacgg taatatcgtt
      841 tatctaagtg ctgcctcata tttagcgccg ggtggttatg agcagatgaa aaccgaccta
      901 actaacatta aaacagcatt tgagaaaaaa taattaacct tacaagcggt cagatttcct
      961 cctatttttg caagtgcctg catttgtaaa aaagagagag aatatgaccg cttgctattt
     1021 atcactatgt tctctttttt tagattaaat ctatttcttt taatattgct cattccaatc
     1081 agtgccagtg tgggtgtggc agattttcat tggagtgaaa tttttcattc ttccgaacaa
     1141 agtcagatct tttttatcag ccgtttacca agaacgctcg cagtgatatt agtcggtgca
     1201 accttagccg ttgcaggtat ggtattacaa attgtgctga agaaccgctt tattgagcct
     1261 agtatgattg gcactagcca aagtgcggca attggtattt tacttgctag tttacttttc
     1321 ccaacatcag cattactgtt aaaaatgtct attgccacat taagtgcatt aatgggaatg
     1381 gggcttttta tgttgctcat tcgtcaatta ccgcctcatc aacaattaat gctcccatta
     1441 atcgggatcg tttttggcaa tgttattgaa gctatcagca cttttattgc ttatgaaact
     1501 gacagcctac aagtgctttc gatttggttt tccggcgact tctccggtat tttggcaggt
     1561 cggtatgaac tgctctggat taccgctatt ctggctgttg tggtttatgt gatggcagat
     1621 caattaacca ttgcaggcct tggtgaaaat attagtacca acttaggcat taactacaaa
     1681 caaatgactt ggcttgcctt aattgtggtg gcgatgatta ccgctattgt cgtggtgacg
     1741 gttggacaga ttccgtttat cggcttggtc gtccctaata ttgtctctcg catagcaggt
     1801 gaccgattgc gtaaaaatct gcctgcggtc gtggtgttag gtgcgaattt agtcctgatt
     1861 tgtgacattt tagggcgagc catcaatgcc ccttatgaag tgccgatttc tactattttt
     1921 gggattattg ggacagtgat tttcctctat ttattgctca aagagaaacg ggctgaggag
     1981 aaggctcgtg gttagatcac gctttatcgt tttaagctta atcttattag caagtattct
     2041 gttttatatg acctataatg cgaaaggtaa ttgggacttt atattgcaac tgcgtggcaa
     2101 aaagcttatt ttgctctgta ctattgctta tacgattggt atttcgaccc tgctattcca
     2161 aacactcaca cataatccta ttttaactcc aagtattttg gggttcgatt cgctctactt
     2221 gctattgcaa acctcgttag tatttttatt tggcggttta ggctttactc agttagaccc
     2281 aagctataag tttttctttg aaaccttgtt aatgctaggg gcatcaatat tactatttag
     2341 ttcactgaat cgaaatcgat ccgatttaac ccgaatgctt ttaatcggtg tcatctttgg
     2401 tgtcttattt agaagcctaa ataatttgtt gcaacgaatg tcgacccaac agagtttgcc
     2461 gttgctcaag gctcttcttt gcctcattta acctgactac ccccacatta ctttggattg
     2521 gaggctgtat cgctattctc tctgccattt gggtctggtt acaacggcat aaattagata
     2581 ttttgttact tggcaaagat aaggcaattg ggcttgggtt agaatatcat caattttcac
     2641 gtcaattact aatctgttgt ggattgttgg tgtctgtttc aaccgcactt gttggcccga
     2701 ttctatttct agggctactt gtttgtgcca ttgttaatgc aattagcccg actgtttgcc
     2761 atagcgtgcg aataccaatg acttttttaa tctctgccat caccttaatt ttagggcagg
     2821 caatcttcga gcaagtgctg aaaatgcaag gggttctgag tgtcgttatt gaatttattg
     2881 gcggtattgt ctttatttat ctcattttaa aacggaaaaa ataaccataa attaaggaag
     2941 aaaatgataa cggttaaaaa tcttcaccac aaaatcggga atgccacgat tctgaataat
     3001 atcaatttaa ccattccaaa tggtggtatt accgctttaa tcggagcaaa tggtgcgggc
     3061 aaatccaccc tgctctcttt aattgcacgc ttgcaaccta tccaacaggg tgaaatccac
     3121 ttaaatgagc tgaatatagc caacacagct tctcaaacta tcgctcgaca actggctatc
     3181 ttgacccaag ataatgtgat tcatagccgt attaccgtca aagatctgct gttatttggg
     3241 cgttaccctc atcatcaagg cagaatcact tcgcacgata atgccattgt agaagaggct
     3301 ctggtacgat ttgatttatc gactttctcc caccgattct taaatgaatt atccggaggg
     3361 caacgccagc gggcattaat tgcaatgacc ttctgtcagc aaaccgatca tatcttatta
     3421 gatgaaccac tgaataattt agatatgttc catgctcggg aattaatgaa attattacga
     3481 aaattaaccg atgaactcgc cttaactact ataatggtgg tacacgacat caacattgct
     3541 gctgcttacg cagatactat tattgcaatg aaagatggtg gaattaagat gatcggcacc
     3601 ccaaaagaga ttatcaccac tgaaaattta aaaacagtgt ttaatcttga tgccgaagtg
     3661 ttagaatgcc aaggcaaacc tttagttatt cat
//
LOCUS       DANLXB010000216         3670 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLXB010000216 DANLXB010000000
VERSION     DANLXB010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..304
                     /locus_tag="PXD41_002340"
     CDS             <1..304
                     /locus_tag="PXD41_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6289824.1"
                     /translation="GNHSLTLLENINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQ
                     QNAKQKVLVADSSKYGKYSLFRATQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
     gene            complement(385..555)
                     /gene="rpmG"
                     /locus_tag="PXD41_002341"
     CDS             complement(385..555)
                     /gene="rpmG"
                     /locus_tag="PXD41_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL6289825.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(567..803)
                     /gene="rpmB"
                     /locus_tag="PXD41_002342"
     CDS             complement(567..803)
                     /gene="rpmB"
                     /locus_tag="PXD41_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL6289826.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(1035..1772)
                     /gene="radC"
                     /locus_tag="PXD41_002343"
     CDS             complement(1035..1772)
                     /gene="radC"
                     /locus_tag="PXD41_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL6289827.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1922..3124
                     /gene="coaBC"
                     /locus_tag="PXD41_002344"
     CDS             1922..3124
                     /gene="coaBC"
                     /locus_tag="PXD41_002344"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL6289828.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            3124..3441
                     /locus_tag="PXD41_002345"
     CDS             3124..3441
                     /locus_tag="PXD41_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289829.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3438..3620
                     /locus_tag="PXD41_002346"
     CDS             3438..3620
                     /locus_tag="PXD41_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6289830.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
BASE COUNT         1119 a          744 c          742 g         1065 t
ORIGIN      
        1 tggtaatcat agtttaactt tattagaaaa tattaatcct gatattgctt ttgtgagctg
       61 taattcttgg agcttagaaa aaggagttac agcacctaca gaagagaaag ctaatttaaa
      121 aagaatgctc caacaaaacg ccaaacaaaa agtactggtt gccgatagca gcaaatatgg
      181 aaaatactct ttatttcgtg caactcaact cgataacttt acacaaatta tcacagataa
      241 aggactacct attgaatata gccaagcctt gtcaagtaat gattttaagc tatcattagt
      301 ttaatcatac aagcggtctt ttttcactaa ttttttgtat atgaaaaacc cagcattcgc
      361 tgggttttaa atcttaaaac aaaattattt aatttttgct tctttgtaga taacgtgttt
      421 acgcacaact ggatcaaatt ttttgatttc cattttttca ggcatattac gtttgttttt
      481 atctgttgtg tagaagtgac cagtttctgc tgtagaaact aaacggattt tctcacgagc
      541 gcctttagct gccatttttt agctccttag attttttcgc cacgagcacg gatttcagct
      601 aatactgcat caatgccttt tttatcaata atacgcatac ctttcgcagt taaacgtaag
      661 gttacgaaac ggttttcgct ctcaacccag aaacggtgag tgtgaaggtt tggtaagaaa
      721 cgacgtttag tcgcattcat tgcgtgtgag cggttgttac caactgctgg acgcttgccg
      781 gttacttggc aaactcttga catttgaatt tctccaataa ttttaagctt aaaaatggtt
      841 cgggcgatct cacaaaaggc gttgctcaac caacccctcc gattttgatt gcctcgtcag
      901 gcattaaccc gaccacagtc tatgtaataa agactgccga ttataccgat ttcatttgtt
      961 atattcaagt agaatttata tgcgtatctt ttactgtttc aggagaaatg ttaaaggtta
     1021 cataaagcaa gcggtcattt tctatcagaa atttgcaaaa atgaatgctc cttcatctct
     1081 aatttctctt cctcgaacga aaaatagtcc cctttgccga caataatatg atccacaaag
     1141 cgaatatcaa ccaattcgca cgccatttcg atctttttag ttaaacttct gtccgactca
     1201 ctcggcagac aagaacctga ggggtgatta tgagccacaa taatcgccgc ggcattatat
     1261 tttaacgctc ttttaataat ttctcggggg tgaacagcag tttgattaat ggtgccgaag
     1321 aacatttttt ctttataaat caatcggttt tggttgtcca aaaacagcac cataaaaact
     1381 tcccgttctt cttcctccaa ctcggtttgg aaatacataa tcgccatata aggggcttga
     1441 atcatctcgc taaattccat ttgttgagcc agatagcgtt tggtcatctc tttagaggct
     1501 tgtaactgaa tgtatttggt tttgcctaaa ccgtaaattt tgcaaaaatc atcaatattt
     1561 gcattcagta attggcgtaa cgagccaaat gccatcaaca cactctctgc caatgccagc
     1621 acaggcacag ctttcgtacc agtccgtaaa aatatcgcta ataattcgga atcggttaat
     1681 gaggctgccc cctgtgttaa taatttctca cgcggcatca ttgttggctc ttgagaatct
     1741 tcatcaaaaa aatcgttcat tttttcctcc atcaatttag ttaagcataa aagagccaac
     1801 ctttgcagac aaagggattt attcaatttt tcgagcaaga tcgcaaaaat agtgaagttg
     1861 tgagcaactc cttattccgc taaaatatgc aaaataaatc cacgctttaa ggatagtaaa
     1921 gatgttacaa aacaaaaaaa ttttagtcgg catttccggt gggattgcag cctacaaaac
     1981 cattgaattt atccgccact taaaaaaggc aaatgcggaa gtgcgtgtag tgctaacccc
     2041 agcagcagaa gcctttgtaa cgcctttgac cttacaagcg atttccggca atgcggtttc
     2101 cacttcacta ctcgacccac aagccgaact ggcgatgggg catattgagc tggcaaaatg
     2161 ggcggattta atcgttatcg ccccggcaag tgccgatttt attgctcgcc tgcgtatggg
     2221 aatgggcaac gatttacttt ccactctctg ccttgcgact gcaagcccga ttttgcttgc
     2281 accggcaatg aatcaacaaa tgtacaaaca gattgcggtg caagaaaatc tgtctgtttt
     2341 agtcaatcgt ggcgttcagc tcatcggccc gaatagtggc ttccaagcct gtggtgatgt
     2401 gggggctggc agaatgtctg agcctgaaga aatttaccaa gcggtgttgg ctcatttctc
     2461 caacaatcaa gatttagagg gcttaaatgt aaccattacc gccggaccga ctcgtgaggc
     2521 gattgaccct gtgcgttata tcagcaacca cagctccggc aaaatgggct acgcgattgc
     2581 taatgccttt gccgaacgtg gagcaaaggt tacgttgatt agcggtccgg tgaatttacc
     2641 aacgccgaaa aatgtggaac gaattaatgt ggaatctgcg gttgagatgg agcaacaagc
     2701 ggtcaaattt gcccaaaaat ctgcgatttt tattggctgt gcagcggttg ccgattaccg
     2761 aatggcggca gtctctgacc aaaaaattaa gaaaaccgat gccaatgatg aactcacgct
     2821 aaaattggta aaaaaccccg atattatcgc taacgtcgcc aatcttgccg aaaaccgccc
     2881 ttttgtggtt ggttttgccg cagaaacgca aaatgtggcg gagtacgcta aatcgaaact
     2941 cgaacgcaaa aatctggata tgatttgtgc caatgatgtc tcaggcggac aagtgttcgg
     3001 gcaggatcaa aatgcgttgc atttgttctg gaaaaatggt gaaaaaacgc ttcctctggc
     3061 ggataaaagc aaattggcag aaagtttggt acaggaaatt gtaaaacatt atcgagaaaa
     3121 ataatgaaat tactggttag ccattttcat caaggcgaag ggaaatttcc tacattctca
     3181 gctggtactg ccgttcgatt agggagtgaa tgtgtaaact acccaaactg gtttgcctgt
     3241 gaaattgacg gttggaaaac ctttgtgcca agccatttta ttagcgaaga taaattgata
     3301 tgcgattata acccaacgga acttgttgca gcacaaggcg agagagtaga attccttgaa
     3361 ctacattacc aatgggcaat tgtcaaaaga gaaaacgaaa ttggctggct accttgtgaa
     3421 atcttaaggg taataggatg aaaattatgc aacttacgtc aaatcagtat atcaacgaca
     3481 ttaaacatat tcttttatct gctcgccaaa aggcgtatca agccgtgaat tcggcaatgg
     3541 tcgaagccta ttggaaaatc ggtgaacgaa ttgtgcaaga agagaaaaat atggtcaaag
     3601 atcaaaatga aaaagtataa tattgtattt tcagcagata aaaactacct gccatattta
     3661 gagattgcct
//
LOCUS       DANLXB010000217         3633 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLXB010000217 DANLXB010000000
VERSION     DANLXB010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..991)
                     /locus_tag="PXD41_002347"
     CDS             complement(<1..991)
                     /locus_tag="PXD41_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL6289831.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQ"
     gene            1140..1481
                     /gene="erpA"
                     /locus_tag="PXD41_002348"
     CDS             1140..1481
                     /gene="erpA"
                     /locus_tag="PXD41_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL6289832.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1586..1909)
                     /gene="yidD"
                     /locus_tag="PXD41_002349"
     CDS             complement(1586..1909)
                     /gene="yidD"
                     /locus_tag="PXD41_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL6289833.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(1858..2232)
                     /gene="rnpA"
                     /locus_tag="PXD41_002350"
     CDS             complement(1858..2232)
                     /gene="rnpA"
                     /locus_tag="PXD41_002350"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL6289834.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2268..2402)
                     /gene="rpmH"
                     /locus_tag="PXD41_002351"
     CDS             complement(2268..2402)
                     /gene="rpmH"
                     /locus_tag="PXD41_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL6289835.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2639..3601
                     /gene="hemH"
                     /locus_tag="PXD41_002352"
     CDS             2639..3601
                     /gene="hemH"
                     /locus_tag="PXD41_002352"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL6289836.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT         1101 a          691 c          716 g         1125 t
ORIGIN      
        1 cttggtaact aaaagtttgt gttttaactg tctttgtttt ttcaaataac ggctctagct
       61 gtttaagttg gtaatcaatt tgataataac gtggtggata aacaacacct ttctcattag
      121 ccacatcaat ttgagccttt aggtattttt cccctaacat aaataaatat gaactatctg
      181 ctaattttga atcagaaagg gagattttag tatcacttaa agctgctgca atatttgatg
      241 catctgattg attaaatgct tttgaatatt ctttaatacc tgctttttgt gcagtttcat
      301 aggctttatt taagttttcc aactgaaccg acttattcac agataaatct tcctgaatta
      361 atgatttttc atattgtaat gcagtaagca cattttggaa atcgactaga aaatcttcta
      421 attcaacagc aaatgctttg ctattaatga attgaaccaa cttaccaagg gtgtcctgcg
      481 cctccatagg tgtctctgca gaaaaagata gtgtacgacc tattgcatta ggatctttct
      541 ttgcatcagg aataataaag ctggtatttt cattactcaa attggataaa actgtgcgtt
      601 gcccctgctc atcttttcct tcagctaacg tcttatacac attggaagtg ataaaaaatt
      661 catttttagt atcttgagat tgtgctaatc ggttaaaatt gttgaacaaa ctcgcagaca
      721 atgcatttgg atcaacagga tctacacgca aaatccgact atattctctg cgaacattta
      781 aatactcacc taactctgtt aatttagggg caataactgt tgccttagac gtccattgct
      841 cttttgcagt aaatgcataa ataccagcaa gtaatgtggt aatgaatgtt gttataacaa
      901 tccaccattt tttatcccat agagcacgaa aaatctcaat taaatcaatc tcatccgagc
      961 tttgctcatg actttttact gaatctgcca tagtttcctc taaaatttgc atgtttctgt
     1021 acagcattat acataatttt cttatttcca ctgcattcat ttactctttt ttaagattgc
     1081 acttcctatg taattattag ataatatcca atcacagtaa aattttgatc taaaacaaaa
     1141 tgagcgatat tcaaattcct ttaatcttta ctgatgcggc ggctcgtaaa gtaaaaagct
     1201 taattgaggg cgaagagaac ccgaatcttc gcttgcgtgt gtatattacg ggtgggggct
     1261 gtagtggatt ccagtatggg ttcacctttg atgatcaagt caatgaggga gaccttacca
     1321 ttgagaatca aagcgttggc ttggtggttg acccgatgag cctacaatat ttaattggtg
     1381 gcacggtgga ttataccgaa gggctggacg gctcacgttt tgtcgtgaat aatccaaatg
     1441 caagctcaac ctgtggttgt ggttcttcct ttagcattta attcactcga attattgcct
     1501 tattcaatat cagtctcaca agtaaatttt ttactaaaaa tgaccgtttg tattaaacaa
     1561 aatagcctaa cttattgagt ttaggctatt ttttatcatt atgtttgcag ttgcctttac
     1621 aacaaagtgg gacaggatct tcgcctccct cactcaaagg gttgcaacgc agaatacgct
     1681 taaacgctaa atacccacct ttaattgctc cgtggatttt aatcgcttcg accgcatagg
     1741 tggagcaggt tgggtaaaat cggcaacgtg ggccaatcaa tgggctgata gcatagcgat
     1801 agaaataaat cggtagcaat agaattttgg ctaataggct gagacgaggt ggctgattta
     1861 tggattctgt tgtgccggct ttttgctcag gcgaatgtgt cttgaccata gtttttccaa
     1921 tgtttcaaac agcgttgcgt tgtctaattt gccaatgccg ccttttgcca caaatacaaa
     1981 atcgaaattc ggcaattcgt gttgcttgag gcgaaaactt tcacgcacta tccgcttaat
     2041 gcgattacgg tcgtgagccc gttttaaatg ttttttggca acagttaagc ctagacgagg
     2101 attttctaga ttattctctc tagcaagaag agtcatttgg ggtgtgctgg ctcgaagtgg
     2161 ctcttcaaac accgccttaa attgaacggg agctaacaaa cgtagctccc gagagaaatt
     2221 tagcttcttc acacttaatc agaaaggtgt tttggctggt tctgcaatta tgcagataaa
     2281 gatttacgac ctttagcacg acgacgcgct aacacttgac gaccgttttt agtagccata
     2341 cgagcacgga aaccgtgagt acgagcacgt tttaatactg atggttgaaa tgtacgtttc
     2401 attgcttatc tacctaaaat ttaaaaagtt ggcataaaat ggtttctgcc aaacaaggac
     2461 cataaaaaag agttgcaatt ctacaggcaa ttaaaataaa aagcaagaaa caatccaagc
     2521 acaactcggg ttgtttgcaa aatttttgaa aaatacgacc gcttgttata atcgcagaaa
     2581 tttatattgg tttgtggcat aatcgaaaaa atattaacta ttgatgagaa atagaacaat
     2641 gaatcaaccc caacaaatag gtattttgct ggctaattta ggtacgccag atgaacccac
     2701 gccaagtgcg gtgaagcgtt atttaaagca atttttaagc gatcctcgtg tgatcgatct
     2761 accaaaattt aaatggcaag caatcctaaa ctgcatcatt ttgccaagac gttcgccaaa
     2821 agtggcaaaa ttatatcaat cagtatggag cgaagaaggc tcaccgttat tggcgatttc
     2881 tcggcaacaa caacgagcgg tacaacgcta ttttgatgcc aaaggcaaaa atgtggtggt
     2941 ggaattggga atgtcttacg gcaatccaag tattgaaagt gcgaccgata acctcatcaa
     3001 gcagggggtt gagcggatta ttgtgctacc gctttatccg caatacagta gcactactac
     3061 cgcttcggtg tttgatgcgt ttgccaacgg tttaaaagca cagcgtaaaa tcgtgccgtt
     3121 tgattttatt cacagctatc ataacgatcc gctttatatt caagcgttgg ctaactctat
     3181 tgatgttaaa cctgacgagt tattactgtt ttcatttcac ggcattccta aacgttatga
     3241 aacggaaggt gatttttacg ccaagcattg ccaagaaaca gcagaattag tggctgaaaa
     3301 gctaggtctg ccaagagaaa aatggtattt gtctttccag tcccgttttg gtgatgaaga
     3361 gtggctacag ccttataccg atcaaaccct tgaaagcttc ccacaaaaag ggataaaaaa
     3421 agtggctgtc gtttgcccgg gcttttcagc agattgtttg gaaaccttag aagaaattac
     3481 agaagaaaac cgcgagaact ttgaacatgc cggcggagaa tcttatcgct acattccagc
     3541 gttaaatgcg agtggcgatc atatcaaggc attagtaaaa ttaatcgaag cgaaaatata
     3601 atataatttg ggcggataat aaatccgccc att
//
LOCUS       DANLXB010000218         3579 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLXB010000218 DANLXB010000000
VERSION     DANLXB010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(40..1542)
                     /gene="ppx"
                     /locus_tag="PXD41_002353"
     CDS             complement(40..1542)
                     /gene="ppx"
                     /locus_tag="PXD41_002353"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL6289837.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1738..2067
                     /locus_tag="PXD41_002354"
     CDS             1738..2067
                     /locus_tag="PXD41_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL6289838.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2131..3561)
                     /locus_tag="PXD41_002355"
     CDS             complement(2131..3561)
                     /locus_tag="PXD41_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL6289839.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1146 a          831 c          627 g          975 t
ORIGIN      
        1 taaacgaaaa aggaagcctt cgcttccttc atttaaatgt taagagaccg caaactgaag
       61 atttgtactc gccaatattt tttgctcttc ttctaaatct attgaaatca gtggattatt
      121 cgctaagaag ccctgttcaa aggtaagttg ccaagcatta ttttcaatca ccaaattcaa
      181 ctgtttcggc actacagtcg cttggcgaga acggtttaat agcaccgcta gccggaaaac
      241 ccgtaccaac gttaatacat ctctacattg gtaacggttg atactacgaa tatccgagcg
      301 tttgaatcct ttaaggtggt atcgcattaa taccgataga agggtttgct gttcaaaatc
      361 aaatcccggt aaatctcggt ttgcaatcaa ataagcagaa tgacgatgca cattattgtg
      421 gtttacaaca ataccaatct cgtgtaataa acttgcccat ttcagcattg aacgcagatc
      481 ttgcacttgg cggcggttct tccaagtttt gatttggtca aataaaatca acgccgtatg
      541 ctccaccctt tttgcttgct gtttatctaa agcaaattgc tcagctaacg cttctgcagt
      601 ccgttggcga atatccccaa cttggaaact tttctccaaa ccatacatta ccccttctct
      661 taaagccccg ttggaataac gtaatacatc aattctaaaa gtgtgaaaaa gtgctaaaag
      721 aatagctaag cccggaacta gcacatctgc tcgttcatca agtaagcctc gtagcttaat
      781 ctcatttaac gatttaaact ctaggcaaat atcaataatt ttctgtaggc ggctttctgt
      841 aattaagcca tcacgatagc cattggcaat cagcacttga tggacggttt taatcgtacc
      901 ggaagaacct aaagcatagt cccaacctaa ctctttgtac tcccacatta aatcttcgat
      961 tttttccatt gcaagctgat aggcactatc aaaacgctca atcgttaatt ccccctgcgg
     1021 gaaaaagcgt tttgcaaaac tcacacaacc catatgacga ctttccgctc gaatcggggt
     1081 aaagtcatca ccaatagtca tttccgttga accaccgcca atatctacca ctaattttct
     1141 gccagtttcg ggttgggtat ggctaacgcc cgaataaatc agcctcgcct cttgttgtcc
     1201 ggaaataatg gaaatcgggt aaggaaatac tgctttcgct tgctccagaa aagcttggtt
     1261 attgattgct ctacgtaagg tataagtgcc aaccaccttc acattctctg cagagaaccc
     1321 ttctaaacgt tttgcaaata aagctaaaca agcaatgcct ctatcaatcg catcttggct
     1381 taatactaag ttttcatcaa gcccatctgc cagccgtaca cgccgtttca aacgggaaag
     1441 cacttgaatg gaaccattta cgatacgggc tacaatcata tgaaagctgt tcgagcctaa
     1501 atcaatagct gcaaactctc taggagcaat atttgatgac ataatgaaac cctgtaccaa
     1561 taactgaaat aagtaagata ttaccatttt tgagccctag atatcactac aaatttagcg
     1621 ttattcgcga gaattaattt aaatcataaa atgtgataaa tttttttgac gaattgacgg
     1681 aaaaagaata ggatttacga gcttacttaa ttcaacacta catcaaggga gattgatatg
     1741 tctgaagtga ataaatcatt ccacgatatg ctggaatatg tgcatcttta tcgtctaaaa
     1801 aacaaactgc accgtgaaac ggcggataat gatcgcaaaa ttcgagataa tcagaagcgt
     1861 gtacttttat tagataacct aacgcaatat attaccgacg aaatgtctat cgaggaagtt
     1921 cgagcgatta tttccaatat gcgtgatgac tatgaaaatc gagtagatga ttatatgatc
     1981 cgtaatgcgg aactttccaa acaacgccgt gaaatccgcc aaaaaatggc ctctcacaaa
     2041 caagcaccaa ccaataaaaa agcataaaaa gccaagcggt ctgatttgca aaaaaatatg
     2101 caaatcagac cgcttgtgat taagcagaga ttaattcagc tttttcattg catctgccac
     2161 aaattctgct tccggtccca aaatcacttg gtagccattc tcgcctaatt tgatattacc
     2221 ttttgaccct aacgctttca atttggtttc gtctgctttc gccgtatcat ttaaggttag
     2281 gcgtaagcgg gtaatacaag catcaatgct ggtaatattc tctttaccac ctaatgcttc
     2341 aacaaatttg gcagcttgtt cgctacgaga aacagtattc actgtttgta cttcgctatc
     2401 ttcctcacgc cccggcgttt ttaaattaaa ggcttggatc actactcgga acaatacata
     2461 gtaaattact gcgaatacga taccttgggc caataacata taccactgca ctgccagcgg
     2521 atttcgtgtc gataacacta aatcgaccaa ccctgcacta aaaccgaaac cggcaatcca
     2581 ttccattgag gctgcaatat aaacagataa tccggttaat aatgcgtgaa ccacataaag
     2641 cacaggtgca acaaacataa aggcaaattc aagcggttcc gtaatgccgg tgaagaacga
     2701 agctaaagca gcagcaaaca taatagaggc tacttgcatt ttcttagccg gtttcgcact
     2761 gtggtaaata gctaatgctg ccgcaggtaa gccaaacatc atcatcggga agaaaccagc
     2821 ttgatacata cctgttactc ctatcactgc tttgccctca gccaatgatt ttgccccacc
     2881 taagaagttt ggaatatcat taatgcctgc aacatcaaac cagaaaaccg agtttaatgc
     2941 gtggtgtaat ccaaccggaa ttaataaacg attaaagaaa gcataaatac ctgcccctaa
     3001 cgcccccata tctttgatag attccccaaa agagactaaa gcaccaaaaa taaccggcca
     3061 gacataaagc aagataaatg acaccacaat cggcaccaat cgtttaccgc taaagaaaga
     3121 caatgctttc ggtaactcta cttggtagaa acggttataa atttcggctg aaataacccc
     3181 tactaagatc ccgataaatt ggttgttgat tttaccgaat gctgcaggca cttgatcaac
     3241 tgcgatccct tttagctgag caacggtccc cggagacaac aaagtggtaa ttactaaata
     3301 cccgactaaa ccggataatg ctgctgcccc atctttttct tttgacatac caaatgccac
     3361 acccacggca aatagaatag acatattatc aataattgcc gccccagatt taatcagcaa
     3421 tgccgctaat tggctatttg ttccccagcc gtccggatca atccaatagc ctatacccat
     3481 caataatgct gctgctggta atgcagcaac cggcaccatt aatgcacgcc caattttttg
     3541 taaataggtt aatgtactca taaaagcctc caaaaatac
//
LOCUS       DANLXB010000219         3488 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLXB010000219 DANLXB010000000
VERSION     DANLXB010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..344
                     /locus_tag="PXD41_002356"
     CDS             <1..344
                     /locus_tag="PXD41_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL6289840.1"
                     /translation="DFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILFPLGLILG
                     ETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAAVFMAMVL
                     LAITWILILFC"
     gene            381..2024
                     /locus_tag="PXD41_002357"
     CDS             381..2024
                     /locus_tag="PXD41_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL6289841.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(2231..3100)
                     /locus_tag="PXD41_002358"
     CDS             complement(2231..3100)
                     /locus_tag="PXD41_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6289842.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESATSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(3110..>3488)
                     /locus_tag="PXD41_002359"
     CDS             complement(3110..>3488)
                     /locus_tag="PXD41_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6289843.1"
                     /translation="DLVNLELGWQELENGIRMNVMSFETTPAEGKKAELHRKFIDIQL
                     LIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEIDDKNNLILKPNMFAIFLPYEPHK
                     PGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         1113 a          676 c          637 g         1062 t
ORIGIN      
        1 cagattttca acgtgtgatc aatgcagctg gctactctat gaaggggtta aaagccgctt
       61 atattaatga agccgccttt cgccaagaaa tttggtgcgc tactatttta ttccctctag
      121 ggcttattct aggcgaaacc aatattgaaa aagcattatt agtaggcaca gttttacttg
      181 ttttagttac agaactactc aatagtgcgg ttgaatctgt tgttgaccgc attggggctg
      241 atttccacga gctttctggt agagctaaag atattggctc tgcagctgta tttatggcga
      301 tggttttact cgctataact tggatattaa ttttgttttg ttaactctat ttttcaacca
      361 acactcttac tgaggtattt atgcgcttaa aaaaaacatt actttcggta gcactactta
      421 gtgcaacatc agcaatggcc tacgagacag gtaaaacata tcgttttacg gttttacata
      481 ctaacgatat acacggtcac ttttggcaaa gtgataaagg cgaatacggt ctcgctgctc
      541 aaaaaacatt ggttgataat attcgcaaag aggtcgcaga aaaaggtggt tcggtattaa
      601 tgctgaatgc aggtgatgcg aatacaggcg tgccggagtc agatatgcaa aatgcacgtc
      661 ctgatattga aggaatgaat gcgattggtt acgatgcaat ggttctaggt aatcacgaat
      721 ttgattaccc actgcaaatt ctctctatgc aagaaaaatg ggctaaattc ccctttattt
      781 cggccaatgt cattaataaa aaaacggata aacccattgt aaaaccttac gtgatgttag
      841 aacgaggcgg actaaaaatt gctgttatcg gattaacaac cgaagatacc gcaaaattag
      901 gtaatccaga tgtaacggaa aatgcctttt tcaaaaaccc tattgaaaca gcaaaaaaca
      961 cattagctga aattaatcaa aaagaaaaac ccgacgtacg tatcgcttta acccatatgg
     1021 gttactattt tgacggtaaa catggtacta atgcaccagg tgatgtaaca atggcccgta
     1081 ccttagaaaa aggagcgttc gatttaatca ttggcggtca tacccacgat actgtttgta
     1141 ttgatgaaaa aggtcaattc aaagccaaat atacgccggg tgaggaatgt aaaccagact
     1201 tccaaaacgg tacttggatt gtgcaagccg gcgaatgggg caaatttgtt ggacgggctg
     1261 attttgagtt taaagatgga aaagctacct tggtaaaata tgaattaatt ccggtcaact
     1321 taaaaaaaac cattaaaaaa gaagacggta ctaaagaata ccgactttac cagcctgaaa
     1381 tcaaagccga tgaagcaacc tataccttat tgaaaaaata tcaagatgag ggcgataaaa
     1441 agcttaatat tgaagttggt cgtgtgaaag ggttattaga cggcaaacgt gagcatattc
     1501 gcttccaaca aaccaatctc ggtcgtttaa ttgcacaatc gcaaatggaa agggtaaaag
     1561 ccgatatcgg gattatgaac tccggcggta ttcgtacctc ccttgaagaa ggtgtaataa
     1621 cttataaaca tattctgact gttcaacctt tcggtaatat gattgcaacg gtggatttaa
     1681 aaggacaaga attgttagat accctcacca ctattgctct gaaagaagtt gatactggcg
     1741 cttatcctca atttgccggc atttcaatgg tagtcgaccg tacagcaaaa actatttctg
     1801 atgttaaaat cggtggcaaa ccttttgata aagagaaaac ttataaagtt tctctgcctg
     1861 actatgttgc ggctggtggc gatggctacc cattactgaa aaaacaccct agctatgtca
     1921 atacaggctt tattgatgcc gaaatgctga aaaaattctt cgaagaaaat aaaattattg
     1981 aggcagataa atacgatcca aaaaaccaga tcattttcaa atagagctat agaaaatgaa
     2041 actcactctg gcagtctctg ctcaaaagag ctgtggctgc ctgtagattg ttttcttact
     2101 ttcaagtgtt ataggaaatc gataaaaaat ccctaccaaa ttaattcatc accatatgat
     2161 gaaaattaaa aaacctctgg caatactttg ccaaaagtct ttgactttta tagggtaata
     2221 tcactgctta ttagccttta acacgttgtt ccaaaatcac attcagtgtt ttttgtttct
     2281 gtttcaacgc attttcgggt tcggctttaa ctagtaaggt ataaattaaa tcaagaacga
     2341 aaagttgtga cattttagta ccgatagaat ctccttgcat atgcccctgt cgattaccat
     2401 taattaacac ataattagcc tcttccgtga cgggggaacg taaattgtgt gtaatcgcaa
     2461 ccgttgtcgc tttatttgca cgagaaaaac gtagtgattt cacaatttct tcagaatagc
     2521 ctgaatgact aatccctata actaaatccc cctctttcac caatgccgcc tgcatataca
     2581 taaaatgatt atttgtgact gcatcggttt gtagcccaat acgcattaat ttatgttttg
     2641 catcttctgc ggttaaccca gaagaaccca ctccaaataa aaagatccgt tttgccttac
     2701 gtaattcttc aacaactttt tccaacacgt taaagtcaag caaattaata gtctcttcaa
     2761 taacgttatc taaactcact ttgagcttct cagcaatatc tttcgatgta gccgattctg
     2821 aaacatccgt atcaagcaat actctattat cttgattttg cgtagccaac tctattgcaa
     2881 gctctaattt aaagtcggta taacctttaa aacctaatgt acgacaaaaa cgaataaaag
     2941 ttgcttcacc aacatctaat tgtttggcca cttcagataa tgaacattgg ctaagtaatt
     3001 ccggctgaga taaaatagca gcagctattt tcttctctgt tttggttaaa ctattttgta
     3061 gcgagctaat tgtattaaga atttttcccc gactagacat agtagcctcc taaatcaatt
     3121 caacaggtac tttcaccacc agttttttca atgttttgtt gccattcacc gaatttccag
     3181 gcttatgtgg ttcataaggg aggaaaatag cgaacatatt tggcttgagg atcaagttat
     3241 ttttatcatc aatctcagct gttaattggt agtcatcttc atctcgatat tcatcatact
     3301 tagataaatc tggctggctt aacccgtatt caatcatttc ttcgccgtct atcaataatt
     3361 gaatatcgat aaattttcgg tgtaactctg cttttttccc ctcagctggc gtagtttcaa
     3421 atgacattac attcatgcga ataccatttt ctaattcttg ccagcctaat tccaaattaa
     3481 ctaaatct
//
LOCUS       DANLXB010000220         3488 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLXB010000220 DANLXB010000000
VERSION     DANLXB010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(12..134)
                     /locus_tag="PXD41_002360"
     CDS             complement(12..134)
                     /locus_tag="PXD41_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL6289844.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAAQ"
     gene            complement(214..1191)
                     /gene="rluD"
                     /locus_tag="PXD41_002361"
     CDS             complement(214..1191)
                     /gene="rluD"
                     /locus_tag="PXD41_002361"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL6289845.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1332..2111
                     /locus_tag="PXD41_002362"
     CDS             1332..2111
                     /locus_tag="PXD41_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL6289846.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2184..3215
                     /gene="tsaD"
                     /locus_tag="PXD41_002363"
     CDS             2184..3215
                     /gene="tsaD"
                     /locus_tag="PXD41_002363"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL6289847.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            3297..>3488
                     /locus_tag="PXD41_002364"
     CDS             3297..>3488
                     /locus_tag="PXD41_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6289848.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACA"
BASE COUNT         1054 a          742 c          680 g         1012 t
ORIGIN      
        1 gaagcttttt gttattgtgc agcctgctga attttatcgc ccgctttttc aacatcctca
       61 ccaacaccat caacggtatt acacgcagtc aagaaagttg cagctgctaa aatagttaat
      121 actaattttt tcatagaaag ctcctttttt gttgtttact tatgaaaacg atttcaatat
      181 agcaacttta cattatttaa gcaacaccta aacttaataa tctaattgat ctttataaag
      241 ctcataatcc gcttttagtg cctgaatcaa ttcaataaaa tcatcaggta acggggcgtg
      301 ccactccatc atttcaccag taatcggatg ctctaatctc aacattgtgg cgtgtaaggc
      361 ttggcgttgg aagcctcgta acaccgataa aaacgagtca ctcgcacctt taggtgggcg
      421 aggtctaccg ccatagagct gatcacctaa taatgggtga gcaatatgcg ccatatgtac
      481 ccgaatttgg tgagtacgcc ctgtttctaa tcttaaacgt aaacgtgtgt aattacgaaa
      541 acgctccata atacgataat gcgtaaccgc cggttttccc attgggtgaa cagccattgc
      601 cgtacgttta gttgggtggc gagccattgg ctcatcaact tttccgccct gtgtcataat
      661 gccgctggca atcgcttcat attcacgggt aatacgacgt ttttgtaatg cggttactaa
      721 gtgagtctgt gccggaatgt ttttagccac taccattaag cctgtcgtgt ctttatccaa
      781 tcggtgaaca atccctgctc gaggcacttc tgcaatcggt ggataataat gtagcaaagc
      841 attcagcact gtaccgtccg gattaccagc ccctgggtga accactaaat ccttcggttt
      901 attaatgacg ataatatcgt catcttcata cacaatattt agaggaatat cttgaggctc
      961 aaaacgaatt tcctcttcta tttcagcggt aatttcaaca gtttcaccac caaatacttt
     1021 ttcccttgct ttattcacga tattgccatt aactttcact agatcacttt caatccacac
     1081 tttaatgcgt gaacgagaat agtccggaaa aagttgtgcc agagcctgat ctaggcgagc
     1141 acctagtaaa tctgcagtaa tttctgctgt taaaatcttt tgttgagtca ttaaaccata
     1201 aatcctaatt agtcatttgc ttacttgcgt gatgttatat agaatagcga gatgaacttc
     1261 ataagttatt cttagtcaga ggacattgta cattaacttt tcgtcctaga cactttttat
     1321 aggtaaaaca tatgcgtaaa tttaaatctc ttgccacatt agtattagcc ggactgtttg
     1381 ttgcaggttg ttcaaattca aataaagaat tagaacaatc caacgttcaa gatctttatg
     1441 gcaaaggtca gacctattta caagatggag attataattc tgccattcgc tacttagaag
     1501 cggttggaac caaaggaggc caatattcag gacttggtga gcaaacccaa ctaagtttaa
     1561 tttatgctca atataaagtt ggcgaatact ataaagcact tgatgccgca gaacgttttg
     1621 ctcgctctta cccgaatgca gctaatatgg attacgtatt ctatctagca ggattatcaa
     1681 atgcacgtct aagtgataat tttattcaag acttctttgg tgtaaatcgc gcctctcgag
     1741 ccgtagataa tgttcgtaat gcttacggta acttccaaac tattgtacag cgctaccctc
     1801 aaagccaata tgcacaagat gctcaaaatt ggatgaatta cttatttaac cgtttagcgg
     1861 aacacgaatt agccgttgtt aaattttatg atgaacgtaa tgcctatgtg gctgtagtaa
     1921 accgtatcga agaaatgttg cgtttttacc cgaatacact ggcaaccaaa caagcattgc
     1981 catacttaaa agaagcatat aagcaaatga atatcccaga tgcagagcaa aaaacggaac
     2041 tcttgatcca agaatatgaa agcaaagagc taccgaatcc tgaaaaactg aagtatggcg
     2101 aacaattcta gtcgtacaga gaataatgtg aggggcgttc ttcgcccctt ttggttttct
     2161 aacttatttt gacttctcca actatgcgaa ttttaggtat tgaaacctct tgtgatgaaa
     2221 ccggtgttgc catttatgat gaagacaaag gcttagtggc aaaccagctt tatagccaaa
     2281 ttgatatgca cgccgattac ggtggcgtag tccctgaact ggcttctcga gaccatatcc
     2341 gtaaaacgtt gccactaatt caagaagcct taaaagaggc caatctgcaa ccctcggata
     2401 ttgacggcat tgcctatact gccggcccag gcttggtcgg ggctttattg gtcggctcaa
     2461 ccattgcccg ttcgctggct tatgcttgga atgttccggc attgggcgtt caccatatgg
     2521 aagggcattt acttgcccca atgttggaag aaaatgcccc tgaatttccg tttgtggcat
     2581 tattgatttc aggtggacac acccaactgg taaaagttga cggcgttggg caatacgaac
     2641 tactcgggga atcaattgat gatgctgccg gtgaagcctt tgacaaaaca ggcaaactac
     2701 tcggtttgga ttaccctgcc ggtgtagcga tgtcaaaatt agccgaatcc ggcacgccaa
     2761 atcgttttaa attccctcgt ccaatgaccg acagaccggg actggatttc agtttctccg
     2821 gtttaaaaac ctttgctgcg aatacgatta aagccaatct taatgaaaat ggtgaactcg
     2881 atgagcaaac caaatgcgat attgcccacg cattccaaca agccgtggtt gatactattt
     2941 taattaaatg caagcgagcg ttagagcaaa ccggctataa acgcttagta atggcaggcg
     3001 gcgtaagtgc caataaacaa ttacgagcag accttgcgga aatgatgaaa aaattaaaag
     3061 gcgaagtatt ctaccctcgc ccacaatttt gcactgacaa cggcgcaatg attgcctaca
     3121 ctggctttct tcgcttaaaa aacgatgaac aaaccgactt aagcattagc gtaaaacccc
     3181 gctgggctat gaccgaatta ccaccgatta attaaccttt caagcggtga aatttcttgt
     3241 taattttgca aaaatttaat caaaaataac cgcttgctat atgatagatt aaatttatga
     3301 ataattatgt aattagccta acctccgcac aggagcgtag aaaacatatt gaagctgaat
     3361 tcggcaaaca aaatattcct tttcaatttt tcgatgcgat tacgccggat ttaattaaag
     3421 aaaaagccaa agcatttaat attgacattt caaatacaaa cttaacaaaa ggtgaaatag
     3481 cctgtgct
//
LOCUS       DANLXB010000221         3433 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLXB010000221 DANLXB010000000
VERSION     DANLXB010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3433
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            58..846
                     /locus_tag="PXD41_002365"
     CDS             58..846
                     /locus_tag="PXD41_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289849.1"
                     /translation="MFLSHFKQVLNANIEADGKDWTIIDVFGGSGLLAHTAKREKPLA
                     RVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRISNEIKAKIINKINDFEG
                     FKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEATGYLDDIEVVSESFHQL
                     LPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLIDLTKPPYIFFSSTKSEF
                     IRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMVYKF"
     gene            complement(883..3321)
                     /locus_tag="PXD41_002366"
     CDS             complement(883..3321)
                     /locus_tag="PXD41_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL6289850.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
BASE COUNT         1026 a          635 c          672 g         1100 t
ORIGIN      
        1 tgtgagatag agaaagtatt taaacaagct cctttaccct tttcagggca aaaacggatg
       61 tttttatccc atttcaaaca ggtgttaaat gcaaatattg aagcagacgg gaaagattgg
      121 actattatag atgtttttgg tgggagtggg ttgcttgcac ataccgcaaa gcgtgagaaa
      181 ccgttagcaa gagtgattta taatgatttt gataattacg ccgaacggct aaaccatatc
      241 aaagagacaa atcaacttcg ccaagaaatc taccaaattg ttgatgaaat tataccaaaa
      301 aataagagaa ttagcaatga aattaaagct aaaatcatca ataaaatcaa tgattttgag
      361 gggtttaaag acctcaaatg cttaagttct tggttattgt ttagcggtga gcaagttgca
      421 actttagatg agttatttaa gcacgatttt tggcactgtg tgcggcaaag tgactatcct
      481 gaagcaacgg gttatcttga tgatattgag gtggttagtg agtcctttca tcaattattg
      541 ccgagatttc acgacaaaga gaaagtatta ttgattcttg acccacctta tctttgcaca
      601 agacaggaaa gctataagca ggaaaattac tttgatttaa ttgatttctt acggttgata
      661 gaccttacta aaccacctta tatcttcttt agctcaacca aaagcgagtt tattcgcttt
      721 attcactata tggttcaaaa cagaaaagaa aactggcaag cgtttgaggg agcggaaaga
      781 atagtggtta atgcctcggc aagttataac ggcaaatatg aggataatat ggtgtataag
      841 ttctaaaaat ttaaacgccc tttgatagtg atttaaaggg cgttaaaaaa ccattaaaat
      901 taagaaagta aagctcctgt tttctttcgt agttttcgtg gttgcgtttc gcagttttgt
      961 tggctcgcta caattactgt tcattgtaat gtttaatcga ccattggttt tgctaggatc
     1021 agtttcacca aaataaccgt taaaaccttg gacggtgcct tctgctgctt tgattttttc
     1081 agcaagtatt tgttgctttg cagcactttc atctgttacc ttgagtactt caaagtattc
     1141 gttttcacga atgagaccag tagcaaagtc taaatcgatg aaaactttac gcgcattaaa
     1201 aatagctgtg atctctgcaa cgcttaaagg ttttttcaaa cggataaaat tagttggcaa
     1261 gtgtggaaaa cgttgatatg tgaaaatatc tttgtccaaa tgacgagaaa cctgatctgg
     1321 actagtaatt gcttgaactt tcacttggtc aattgttgga ctaactatgc cggttagtgt
     1381 aatgtttgct gtttgggctg tattatgatt gacaaccatc gctccttcat cgctattctg
     1441 aatacggcgg aacgtgagat cattgccgtt gacatctaag cgcccaccac gataaccaaa
     1501 atagatattg ttaggatcca tttgatctga tgaattgagg attacggtag gtctgccact
     1561 cacaatacct agctctgaaa atgcagattt tttgttattt tcatccgctt gttgatttaa
     1621 tataacagtg ccgtcaccaa cgctaacgga gcctttgttt tctcctttgc cgttgatagt
     1681 tagtgtccct tgtccgattt ttgataatct gtcaccagca gggttactga ttttccagat
     1741 cacattttta tctttatcaa tatcaacacc ggctcctaac caagtaatgc ctgctttcat
     1801 accttccaca gtggtattac catgaaaatg gattgctcct gcaccttggt tgatattctc
     1861 tgtgagactt agcgtattgt tttcacccaa aatatggaat gttttaccgt gttggagttg
     1921 aggattccaa gggttatcgc ctgtattacc attatgacct tgaagtgttg gtaatgaagt
     1981 atctgctaaa ttaactgtaa gaggagcatt ccctcctacg attgagctgg tattgccaga
     2041 aggtgtccaa gtgagtctag caccatttgc attaatagcg cctgcattat tttctttttc
     2101 taaagcacgt acataatgtg ggtggtgata gttccagtaa gatttataaa catctccccc
     2161 aagcgtatta ttctctgaga aatagtcact atatacacct aacacaaccc attttttggt
     2221 acgaacatca taaccaaaaa gagcggagcc actatcgcca ggtaaaccga gagttgttaa
     2281 gggaccgtag ccgtggtctt taaatacatc gtttatggta ttattttcag tttttgctac
     2341 taaaatacgg ctgttaaaat cgctgcctgg aacgcttgga tcgccattag taacaggcag
     2401 aacgctacct cctgtcaaaa aaggaccgtt accgacttca atacgcccgt tgtttaagcg
     2461 atctctttcg ttgttaacca ctgcttgtct accagaaccg gcacgaataa acatggggaa
     2521 aataaaaggg tcgctaaata cactataaaa atcttgtaca ttttcggtag tgcgttcaat
     2581 ctcattagct ggagcgactt cagttactaa tttcgataac ctaggtgcgt ggtagtccca
     2641 gcggggcgtt gggttacctg aaccatctaa aatcagtttt tctccttcgt cattacgttc
     2701 acgtttttct atgcctttcc cgagatctgt tctttcttta tttggatcag gcatatagtt
     2761 attacggcgc accacactat aattgtaatg atggtcgtcg gctttttcgc tagatgaatc
     2821 accaaattga atgtcccgat agccttggtt gtggtttaca ctaataacgt attgtggatt
     2881 aactaatgtt gcaatccctg tttgacgagt aatggaagag aagtcaatca ttggaataga
     2941 catagtctca cctgttactg tttcaaaaac aggtagatca ttagagtctt catcacctcc
     3001 accatagaga aattcataac aaccgggtaa actttcatta tcaaagcatt cagataggct
     3061 tacattcggc ttaggtgaaa tatttgattc cacttcaacc tgcttagttg gtgtaacctg
     3121 taaaaaagta ccgatgtttt tgcccgtttt atcaataact ggaatattgg ttgccccaac
     3181 aaaaaatttg cctttatttt ctgctaaatc acgaaaatat tgataatcga catcaccacg
     3241 tacaatagat gccagtaatg ttggtgaaag agaaatagca attgatgttg ctagaagaga
     3301 gagcttgaaa gtatgcttca ttattatttg aaacctgtat aaatatgtaa gtagatcaga
     3361 tttgagcgct attaaaaaga ttatttaaat cgattaaata ttcatttaaa taccacacaa
     3421 ttattcagcg cga
//
LOCUS       DANLXB010000222         3416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLXB010000222 DANLXB010000000
VERSION     DANLXB010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            5..505
                     /locus_tag="PXD41_002367"
     CDS             5..505
                     /locus_tag="PXD41_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL6289851.1"
                     /translation="MSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGVNF
                     FELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQECL
                     RGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSDYA
                     QGCSCN"
     gene            564..1277
                     /locus_tag="PXD41_002368"
     CDS             564..1277
                     /locus_tag="PXD41_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL6289852.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(1388..2392)
                     /locus_tag="PXD41_002369"
     CDS             complement(1388..2392)
                     /locus_tag="PXD41_002369"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL6289853.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(2480..3319)
                     /locus_tag="PXD41_002370"
     CDS             complement(2480..3319)
                     /locus_tag="PXD41_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL6289854.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
BASE COUNT         1008 a          711 c          666 g         1031 t
ORIGIN      
        1 ggcaatgtca aatatcggtt tagataaaga aatcgcaaaa aaattagcag atgagttaaa
       61 tggtttatta gctacttacc aagtgtttta cactaatgta cgtggctacc attggaatgt
      121 acgtggtgtg aacttctttg aattacatgc aaaatttgaa gaaatctacg atgatttagt
      181 gacaaaagta gatgaaattg cagaacgtat tttaacctta ggtcacacac ctcaaaatgc
      241 gttcagccaa tatttaacca agtcacaaat tcaagaacat attggtgttt cagctgcaca
      301 agaatgttta cgtggtactt taaatggttt caaaacatta ctgggacaac aacgtgaaat
      361 tcttgctcta gcaaatgatg caaacgatga aggtactgct tctcaaatga gtgattacat
      421 caaagaacaa gaaaaattag tatggatgtt cactgcagct tgtgctgaat gttcagacta
      481 cgcacaaggt tgttcttgta actaagttgc aataatataa ttaacccccg ataatgaaag
      541 attatcgggg gttacttttt cagatagcta tgtcgcaagg atttcaattt aaacagtttt
      601 ttattcggca cgacagatgt gcaatgaaag tcaatacaga tggtattcta ttgggagcga
      661 ttgctcacat aaaagattgt cagaatattt tagatctggg tataggttct ggtttagtag
      721 cacttatgct tgctcagaga acagatgatt gttgtcacat tactgcgttg gaacttgaac
      781 caaatgccta ccaacaagcg gtcgaaaatg cccaaaattc tgcatgggca aatcggattt
      841 ccgttttgca aggtgatgtg atgcagcagg catttgaaca gaaatttgac ttgattgtta
      901 gtaacccacc ttattttgca gattcacttg cagctcgaac cacagagaga gatttagctc
      961 gctcaattag ccattacagc cacttgaatt ggctggcaaa agcaaaacca tggttagcag
     1021 agaacgggaa aattacactg attttaccta tagcagctgc agaaaaatta gttgaccaaa
     1081 gtgaacaaat tggattgtat tgtgttgaac aatggttaat ttttaccaag agcggcaaat
     1141 tggctaaacg cagtatagtg agttttagtt taaacaagca aaagcgtgaa cataaagagc
     1201 tgatcatcta tgatctagat aattgttaca ctactgagtt taaaagactt acccaagatt
     1261 tttatttgaa tttttaattt actccccggg ttagtgtttt ccacaaatct tcttcagcta
     1321 cgatgatcta gccttaagct aaaaagcaga ttaccaccca agataatccg ctttttagac
     1381 ttagctatta tgccaaactt gctaccatta ccgctttaat agtgtgcatt cgattttctg
     1441 cttgctcgaa tgccacattc attggcgatt caaacacctc ttcggttact tcaatgccgt
     1501 ttgccagtgc cggatatttt tcggcgatct ctttaccgac tttagtttca ctgttgtgga
     1561 acgccggtaa gcagtgcata aatttcactt tcgggttgtc ggttgcttgc attaattcag
     1621 gcgttactcg gtaaggcatt aataaatcta tacgttcagt ccagctctct agcggttcac
     1681 ccattgaaac ccaaacatca gtatgcacaa aatcgacacc tttaattgca gtctcaatat
     1741 cttcggttac cgtcattctt gcccccgatt cagctgcaaa tttttcacac attttcacga
     1801 atgcatcttc cggtaataag gctttcgggg cacaaattcg cacgtccatc cccaatttcg
     1861 ccccaatcaa caggagtgaa ttacccatat tattgcgagc atcgccgata tagacataac
     1921 tgatttggct aagcggtttt tcgcaatttt cgatcatcgt tagcacgtca gccaacattt
     1981 gggttgggtg gaattcatcg gttaagccgt taaacaccgg cacgccggca taatcggcaa
     2041 gctcttgtac taccgattgt ttaaagccgc gatattgaat cgcatcatac attctgccta
     2101 gcactcgggc ggtatctttc attgattctt tatgcccgat ttgcgaggag ttcgggtcaa
     2161 tataggtaac gtgagcccct tgatcgtaag ctgctacttc aaaggcacaa cgagtacggg
     2221 tcgaggtttt ctcaaaaatt aaggcaatat ttttgccctt taatttttgc tgctcagtgc
     2281 cggcatattt cgcccgtttt aaatctcttg ctaaatccaa caaaaagcga atttcacgct
     2341 cagtgtggtt tactaaactg agtaaatgtc tgttttttaa gttaaatgcc attttgtttc
     2401 tccctgtaaa cattaaaatt tattttatgc aaaataattg cataaaaatt cacttatagc
     2461 aaacagaatt tgcttaccct cattcgggta aataaaactc gcctttgccg actaaaataa
     2521 cctctccgcc aacaaaaatc ttcccgtttt gatcgacttt taataacagg cgattcggcc
     2581 gttgaatttc atcaccttgt gagatctgaa gctggattgg tattttgcct tgtgcaatgt
     2641 gccaaccgcc taaatttgcc gctgccgaac cggtgccggg gtcttcgaca atcgaacctt
     2701 gcgattgaaa aaacagtcgc actttcgcct catttccctc acgacaccaa acatatacac
     2761 tgtctttcaa aaatgctttt tcagccagat ttgcatttat tttgcacttt tcgaccgctt
     2821 gttgagaagc taactcaacc aataactgct ccacgccggt gtttacataa caaggctcgg
     2881 acgcaatatc cgcaacattc agccccaata ttgaggcaca ttctgcacgg cttagcggtg
     2941 tgttttccag gttcacacca ttggttaaag caaaagtagt cacattatgt tgatgttgaa
     3001 tcgctaccaa tccggcatta gtttgcaagc gataggttgt tggaaaatca aaggcggaat
     3061 gcaacacaaa agccgctcca acagttgggt ggccggcgaa cggcatttca taatcaggcg
     3121 taaaaatttt gagttttttg accgcttgtg aatcggtgga agattgaata aataccactt
     3181 cagaaaggtt aaattggcga gcaataagtt gcatttgtaa gtcggttaat ccgtccgctt
     3241 cataaaatac tgcaagcggg ttgccgccaa aatggcttgt tgcaaacaca ttcaccagca
     3301 aataaggata gctctgcatt tatcactcct tacataaact taaagccaca ttgggcgaaa
     3361 attctaccat tttggtggcg aatcgtaaaa ttggaaaatt tatcggtatc cctctt
//
LOCUS       DANLXB010000223         3391 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLXB010000223 DANLXB010000000
VERSION     DANLXB010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            409..927
                     /locus_tag="PXD41_002371"
     CDS             409..927
                     /locus_tag="PXD41_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6289855.1"
                     /translation="MRYIKYSLFLVSTMLISGCAELSAINDKVGDWAGQMNQTLYGSK
                     DGSVEQHNGRQVYTKTRNGKYVYQDSGTLQLKRNIDDVFLKVRREFGFRPTNADSDSR
                     KVYHTVQGTFYHVSGYFESDVDTDGVHLGENYLEVIIEKGSKNQVNVEWKATGSARWL
                     DSAKQRLLNTLK"
     gene            1087..3138
                     /locus_tag="PXD41_002372"
     CDS             1087..3138
                     /locus_tag="PXD41_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6289856.1"
                     /translation="MKLFICEKPSQARDLAGVLGATSKGEGLLATADKSIIVTWGFGH
                     LVEQYQPEDYDEAWKRWAFETLPIIPAQWKMTPKKESKKQYSVVIGLIKKATSVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLTLVVNRDREIANFVPKSH
                     YALAVQLTTTSGETFVAGLAVPEQYLDESGLCLDSRVIQQAEAQIKQTGLAKVVTVET
                     KREKKSPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QFSDVPNVIRSLVASDSGLQTLLPKLNLRQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLEMDKTVATLQSSGHTLVARGNVIVAQGWRILFGKN
                     VDEETGNDDEKQGLPVLTKNQQCNVTHSEVRTLQTKPPAHYTEGTLLDAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLLKKKKSLVASAEAVALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDAFMQKQEAFVKQLIGSCMQQGMSLGNIEIRKCSEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSASNKSAKKSSNLNVLDQLNKLRSQ
                     L"
     gene            complement(3199..3336)
                     /locus_tag="PXD41_002373"
     CDS             complement(3199..3336)
                     /locus_tag="PXD41_002373"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289857.1"
                     /translation="MTLQSRFRQLQQTNVAGIIHLMFSWHSHKVEFPLRMLGDILAGV
                     D"
BASE COUNT         1066 a          659 c          723 g          943 t
ORIGIN      
        1 aaaataactt tgatagagga taaatatatg aatttccctc caactcgatg gaaaatatta
       61 caccagtatc aaactgagct agagctctgg gttgaacaag ccacagaaga gcatatcaag
      121 caatacttga ctgaaattca cggatgtgta tacccagatg actgggaaaa tgtgcgtata
      181 tcccatatgt catctcaaac tcatattttc catagctgtg aacgttgcct agaacttatc
      241 tctgcgatat taacaatctc acaactaagc agacccgatc taaatggtct actgtgtgac
      301 agaaagctat aatatttttt ctctttgtaa gtaaaagagt tttaagtaga ttttaaccgc
      361 acttttgcaa aaaatgaacg cagataaccc gcttgtaagg agaattctat gcgttacatc
      421 aaatatagtt tatttcttgt ttctacaatg ctaatttcag gctgtgctga actctcagca
      481 attaacgata aggttgggga ttgggccggg caaatgaatc agacgctcta tggctctaaa
      541 gacggctctg ttgaacagca taatgggcga caagtttata ctaaaacccg aaatggtaag
      601 tacgtttatc aagattccgg cacattgcag ttgaagcgga atattgatga tgtattcctg
      661 aaagttcgtc gggaatttgg cttccgccca acgaatgctg atagtgactc ccgtaaagtt
      721 tatcatacgg tacaaggtac tttttaccat gtttccggct attttgaatc tgatgtagat
      781 actgatgggg tacacttagg tgaaaactac ttggaagtta tcattgaaaa aggcagtaaa
      841 aatcaggtga atgttgaatg gaaagcaact ggtagtgcta gatggctcga tagtgcaaaa
      901 cagcgtttac ttaatacatt aaaataataa ctcatattgc tcctagaacc tcttcccagt
      961 ggaaacactg ggatttttta tgtccttatt tctcaaatta ttacatccta cgagacaata
     1021 agtcgttgaa tgctatttaa tcagcacatt actatttgcc tatctgtatt cattttagga
     1081 aataatatga aattatttat ttgtgaaaag ccatctcaag ctcgagatct tgccggcgta
     1141 ttgggtgcta cttcaaaagg tgaaggcttg ctggcgactg cggataaatc tattattgtc
     1201 acttgggggt tcgggcatct cgttgagcaa tatcagccgg aagattatga tgaagcgtgg
     1261 aaacgctggg catttgaaac attacccatt attcctgctc agtggaaaat gacaccgaaa
     1321 aaagagtcta agaagcaata ttctgttgta atagggctta tcaaaaaagc aacctccgtg
     1381 gtcattgcga ccgatgctga tcgagaaggt gagatgattg ctcgtgagct gttagattta
     1441 gctggatacc gaggtcaaat ccaacgttgc tggctatcag ctctggatga tgccagtatt
     1501 cgaaaggctc ttcaaacact caaatcaggt aaagaaaccg aggctcttta ctacgccggt
     1561 atgggacgta gccgctcgga ctggttgatt ggaatgaact tctcccgttt atttacctta
     1621 atggctcaag caaaaggcta ttccggtaag ccattgagcg ttggtcgagt acaaagtcca
     1681 acattaactc ttgtggttaa tcgagataga gaaattgcta atttcgtgcc taaatctcat
     1741 tatgcgttag cggttcagct gacaacaacc tctggtgaaa ctttcgttgc cgggcttgca
     1801 gtacctgaac agtatttgga tgagtccgga ctttgccttg atagtcgtgt catacaacaa
     1861 gccgaagctc aaattaaaca aacaggctta gccaaagtgg tgacggttga aactaaacga
     1921 gagaaaaaat ctccaccgtt actctacgca ttaagtgatt tacaaggcga atgtaaccgc
     1981 ttgtttggct ttggggctca gcaggtgttg gatatcgcac aatcccttta cgaagagcat
     2041 aaaatcacga cttatccccg tacagactgt ggttatctgc cagaatcaca attttctgat
     2101 gttcctaacg taatccgctc attagttgcc tctgattcag ggctacaaac tctcttgcct
     2161 aaattaaatt tgcgacaaaa aagtcgggcg tgggacgata aaaaaattac cgctcaccac
     2221 ggtattatcc caaccattaa aaaagctgat ttaagtaaat tgagtgagga ggaaatgaag
     2281 gtctatgatc tcattcgccg ccgatatctt gctcaattct taccgcactt ggaaatggat
     2341 aaaaccgttg ccactctgca atctagtggg cacactctgg ttgctcgggg aaatgtcatc
     2401 gttgctcaag gctggcgtat cttgtttggc aaaaatgtgg atgaggaaac tggtaatgat
     2461 gatgagaaac aaggattacc tgtattgact aaaaatcagc aatgcaatgt cactcattct
     2521 gaagtccgaa cattgcaaac taaacctccc gcacactata cagaggggac attactcgat
     2581 gcaatgaaaa atgccgctcg ctttgtgact gacccaagac tcaaacaacg cttacgtgaa
     2641 acggaaggtt taggcacaga agcaacccgt gccggattaa ttcaaggcct aattgacaaa
     2701 ggatttctcc ttaagaagaa aaaatcactg gttgcctcag cagaagccgt tgccttaatt
     2761 gatagtttgc cggacttact gaaaaatccc ggtttaacgg cattatggga acaagccctc
     2821 aatcagattg ccgaaggtag tatgacactt gatgcattta tgcaaaagca agaagcattt
     2881 gtaaaacaac ttatcggcag ttgtatgcaa cagggaatgt cacttgggaa tattgaaatc
     2941 cgaaaatgtt cagaatgtgg taagccaatg agaaaaatca atcacgctaa gggaacattc
     3001 tggggatgta ctggttatcc agattgccaa cataaagagg ctgataaaaa ggtaaaatca
     3061 gcttcaaata aatctgctaa gaaaagtagt aatttaaatg tactcgatca actgaataaa
     3121 ttaagaagcc agttataaat tcaagtagat tatggtatta tcaaggaaca aagaacccgt
     3181 tttgtagatt gtcggttatc aatctacacc agccaaaatg tctcccagca ttctgagagg
     3241 gaactccact ttgtgggaat gccaactaaa cattaaatgg ataatgccag ccacattagt
     3301 ctgttgtaat tgtctaaatc gtgattgcaa cgtcataata ttacccgatt ggggggatta
     3361 tgacgttgca attactgcta actattctga g
//
LOCUS       DANLXB010000224         3386 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLXB010000224 DANLXB010000000
VERSION     DANLXB010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1435)
                     /locus_tag="PXD41_002374"
     CDS             complement(<1..1435)
                     /locus_tag="PXD41_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6289858.1"
                     /translation="MTLQIHSIRTKVKTPLAKRIAHALTDRKILQFRFDAHLRNQVWQ
                     RLTKTQKALLNRINAAGIDALPKRELDKLLKELKAEIAKNYQETTAYIQPELSGFFAV
                     EKQALTELYNDEIGYDFFNQVPSYQRKATQQATIIAGMPLESWFEKQGSELSFKFEST
                     IRQGLLEGRQTPEIAKATAELFGISRRHADTLVITAVAKVADDAHKALRDENLDLIKG
                     EMHLSTLDTRTSTVCQVRDGKMWDTDYKPIGHSLPYQRPPLHPRCRSILQLVMKDWKE
                     LGFDDVKEMPKSTRASADGQVSEKTNYEEWLSSKTPEEQDKALGKGKADLWRRGVITF
                     SDMLDQSARPLTLKELYSLKNSSSVDKMDSVELVRKKAVAVEPMITRDVVSIITASGG
                     EPAGLDFRLKSLSSLQRKIDTEIMAGVSKEQAIASIRDVIRYTAILDEQRFVEQYQKM
                     QKDLEKQGYSTIIVKNTWKSNNAYKGIN"
     gene            complement(1383..2786)
                     /locus_tag="PXD41_002375"
     CDS             complement(1383..2786)
                     /locus_tag="PXD41_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4055 domain-containing protein"
                     /protein_id="HDL6289859.1"
                     /translation="MPNSISADFAALKAKTKIIDDLLGGTQKMRQAGQTYLYKMKMEE
                     EDGYKNRLNRSTLYPALRETLSQMLGRVFFNPINVEDVHKQIEPLFDDIDLEGNNLDV
                     FASRWFYAALAYGVSYCLVDFVRVENARSLAEEKAQNARPYLVHIKPQQVLGFKTAKI
                     NGKTAFTQFRYKETVTEDDGEFASKQVNYIYVYEIGRVRKYKNDEGGLSLVADMQIKA
                     QNTPLAFVPIVPFITKPIDVWGMGEPPLMELAYLNIKHWQSQSDQDNILNIARVPLLA
                     IFSDTQIKSLEIGSSAISLPKDSTMQFIEHSGSSINAGLTSLKELEDQMKTAGAKLLT
                     KTALAMTDSQAKDEAGKEISQLRHYANKFEDALDLAFEYIGHWLGIGVDEVGTSQISG
                     NIDNDLDPNASMATIIQLRNAGVISNHSTFEEAKRRGLLSDSAKWEDEQARLQAEGLS
                     DDFTNPFNSNQSENAAS"
     gene            complement(2799..>3386)
                     /locus_tag="PXD41_002376"
     CDS             complement(2799..>3386)
                     /locus_tag="PXD41_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL6289860.1"
                     /translation="GDYLESSDAQIFRDKYQELEFKPNPDFNGPYYGLDFGFANDPTA
                     CVKCWVFDDDLYIEREAGKVRLELDETAAYLANALPDLSNYTVRADSARPESISYLKR
                     HGLPYIQPVPKWKGSVEDGVEHIKSYRKVYIHPSCTEVLKEFRLYSYKTDRLSGDVLP
                     IIIDAHNHYIDAIRYALNPLIQARGEAKQCALKVY"
BASE COUNT          913 a          767 c          618 g         1088 t
ORIGIN      
        1 tattaatgcc cttataagca ttatttgatt tccaagtgtt tttaacaatg atcgtagaat
       61 aaccttgttt ctccaagtct ttttgcattt tttggtattg ctcaacaaaa cgctgttcat
      121 ctaagattgc agtgtagcga ataacatctc gaatacttgc tatcgcttgc tcttttgaca
      181 ctccggccat tatttccgta tcaatttttc gctgcaaaga tgatagtgat ttcaagcgaa
      241 aatctaagcc ggcaggctcg cccccagatg ctgtaataat tgatactaca tcacgagtaa
      301 tcataggctc aactgcaaca gcctttttac ggacaagttc cacactatcc attttatcta
      361 ccgaagaact attttttaat gaatatagct cttttagtgt caatggtcta gcactttgat
      421 ctaacatatc gctaaacgtt atcactcccc gccgccacaa atccgccttg cctttgccta
      481 gcgctttatc ttgctcttcc ggtgttttgc tactgagcca ctcttcatag tttgtcttct
      541 ccgacacttg cccgtctgca ctcgccctag tgcttttcgg catttctttc acatcatcaa
      601 agcctaactc tttccagtct ttcatcacca gttgcagaat cgaacgacag cgagggtgaa
      661 gtggtgggcg ttgatacggc aaactgtgtc cgataggctt gtaatcagtg tcccacatct
      721 taccgtctcg cacttgacaa acagtactgg tgcgggtatc gagcgttgat aagtgcatct
      781 cacccttaat taaatcaaga ttttcatctc gcaatgcctt gtgagcatcg tccgccactt
      841 ttgccacagc agtaatgaca agtgtatcag cgtgccgtct ggatatacca aataattcag
      901 ccgtagcttt ggcaatctca ggcgtttgcc taccctctaa caagccttgc cgaatggtgc
      961 tttcaaattt aaacgaaagc tctgatcctt gcttttcaaa ccaactttca agcggcattc
     1021 cggcaataat agtcgcttgt tgcgtagctt tacgttgata tgacggcact tgattgaaaa
     1081 aatcatagcc gatttcatca ttgtaaagct cagtcagtgc ctgtttttca accgcaaaaa
     1141 aaccgcttaa ttcaggctga atgtaagcgg tcgtttcttg gtaatttttt gcaatttctg
     1201 ctttgagttc tttgagcagt ttatccaact ctcttttcgg taaggcatct atcccggctg
     1261 cattaattcg gtttaataat gccttttgcg tttttgtgag tcgttgccaa acttgatttc
     1321 gtaaatgagc atcaaaacgg aactgcaata ttttacgatc tgttaatgcg tgagcgatcc
     1381 gtttagctag cggcgttttc actttggttc gaattgaatg gatttgtaaa gtcatcgctt
     1441 aaaccttccg cttgtaacct tgcttgttcg tcttcccatt ttgcactatc tgacaataaa
     1501 cctcgtcttt tagcttcttc aaacgtagag tgatttgaaa tgacaccggc attgcgtagc
     1561 tgaataatgg ttgccattga cgcatttgga tctaaatcat tgtcgatatt gcctgaaatt
     1621 tgcgaagtcc caacttcatc aacgccgata cctagccaat gcccaatgta ctcaaaagcc
     1681 aaatcgagag catcttcaaa tttgttagca taatgtctaa gctgtgagat ctctttacct
     1741 gcttcatctt tagcctgact atccgtcatt gctaatgctg ttttagttag cagtttcgca
     1801 ccggcagttt tcatttggtc ttctagttct ttcagactgg ttaaaccggc attaatagac
     1861 gaacctgaat gctcaataaa ctgcattgta ctgtctttcg gcagagatat tgcacttgag
     1921 ccgatttcaa gggattttat ttgagtatca gagaaaatag ctaatagcgg tacacgagca
     1981 atattcaaaa tattgtcttg atctgactga ctttgccagt gcttaatatt taaataagcc
     2041 agctccatta aaggcggctc acccattccc caaacatcaa tcggtttagt gataaatgga
     2101 acaataggca caaatgcaag cggtgtattt tgagctttga tttgcatatc agcaaccagt
     2161 gataagccac cctcatcgtt cttatatttt cggacacgtc cgatttcata aacataaatg
     2221 tagttcacct gtttagaagc aaactcgcca tcatcttctg taactgtctc tttataacga
     2281 aattgggtaa aagcagtttt accgttgatt ttggctgttt taaagcccag cacttgttgc
     2341 ggcttaatat gcaccaaata cggacgtgca ttttgagctt tttcttctgc aagactgcgg
     2401 gcattctcta ccctcacaaa atccaccaag caataagata cgccataagc caatgcagca
     2461 taaaaccaac gagaagcgaa tacatcaaga ttgttaccct ctaaatcaat atcatcaaac
     2521 aatggttcga tttgtttatg cacatcctct acgttgatcg gattaaaaaa cactctcccc
     2581 aacatctgcg aaagcgtttc cctcaatgcc ggataaagcg tagaacgatt taatcggttt
     2641 ttatatccat cttcctcttc cattttcatt ttatagaggt aggtttgacc cgcttgtcgc
     2701 attttttgtg tgccaccgag taaatcatcg atgatttttg tttttgcttt taatgccgca
     2761 aaatcggctg agatggagtt aggcattgtt acctcatttt aataaacctt taatgcacat
     2821 tgcttcgcct cgcctcttgc ctgaataaga ggatttaagg cataacgaat ggcatcaata
     2881 tagtggttat gagcgtcaat aatgataggc agtacatcac cacttaatct gtccgttttg
     2941 taactataaa ggcgaaattc tttcaatacc tctgtacaac ttggatgaat atatacttta
     3001 cgataagatt ttatatgctc aaccccatct tcgactgagc ctttccactt tggaacaggt
     3061 tgaatataag gcaatccatg tcgttttaaa taactgatgg attctgggcg agcagaatct
     3121 gctctaacag tataattact caaatcaggc aaagcatttg ctaaataagc agcggtctca
     3181 tcgagctcta gtcttacttt ccctgcttca cgctcgatat ataagtcatc atcgaacacc
     3241 caacatttca cacaggctgt tgggtcattg gcaaaaccaa agtccagccc gtaataagga
     3301 ccgttaaaat cagggttagg cttaaattct aattcttggt atttatctct aaagatttga
     3361 gcatcagagg attctaagta gtcccc
//
LOCUS       DANLXB010000225         3369 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLXB010000225 DANLXB010000000
VERSION     DANLXB010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..2437
                     /locus_tag="PXD41_002377"
     CDS             <1..2437
                     /locus_tag="PXD41_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL6289861.1"
                     /translation="GGVVITADLEFENLLRDTQKVDKAMDDIGKSTLKAEKGLKGLET
                     QATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQMGSNASTVIAQQGSQILSIF
                     GPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAAQKNLSEVVTQTESGVSALSA
                     KIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKAFEQFDGFFGSFTNSSQSIRN
                     AIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDSVTSEMSKTLGITQSEALGLI
                     KLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNKLTRTINDNSVSALDAETSVR
                     LLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKAATIGKTERETAKYAATLLAT
                     TDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTADAKAAREAEAAAKKSAQAKK
                     QVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGAAATKEQREEAEKLAQSIYGA
                     TAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILYPQKIMEAEAARAAIEEQYRQ
                     QRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGLLNGTMSVRDAFASIANTILN
                     SVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKALAASFAPAASMVSLATQGANA
                     IPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGENNQPEIFKASNGMQYMIPGQ
                     SGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASANQAAVAKALSNQIKASVRLE
                     LQSQMRAGGVLAR"
     gene            2441..2770
                     /locus_tag="PXD41_002378"
     CDS             2441..2770
                     /locus_tag="PXD41_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6289862.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            2770..3240
                     /locus_tag="PXD41_002379"
     CDS             2770..3240
                     /locus_tag="PXD41_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6289863.1"
                     /translation="MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEI
                     FRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVE
                     DFGQPVEAKVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
     gene            3248..>3369
                     /locus_tag="PXD41_002380"
     CDS             3248..>3369
                     /locus_tag="PXD41_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6289864.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKNGNAG"
BASE COUNT         1145 a          669 c          796 g          759 t
ORIGIN      
        1 tggcggagtt gtaattaccg cagatctaga atttgaaaat ctgctaagag atactcaaaa
       61 agttgataaa gcgatggatg acatcggaaa atcaacatta aaagcagaaa aagggctgaa
      121 agggctagaa acgcaggcaa ccaaaacggc gatagcagta aatcaagcca caaacaaaat
      181 gaaaaatatc cgtggagtag caggtcaact tggttatcaa attcaagaca tctcaataat
      241 gcttcaaatg ggttctaacg cttcaaccgt tattgctcag caagggtcgc aaatcttaag
      301 tattttcggt ccaatgggag ctgttgcagg ggcgatctta gctattagtg gtgctattgg
      361 tggggcgtta ctccctagtt tgtttgattc aactgatgca actgagcttt tggcagcagc
      421 tcaaaaaaat ctcagcgaag tagttactca aacggaaagt ggtgtttccg ccctttctgc
      481 gaaaatcatt aaattagcaa aagtaagcga agatgcagca aaagcaaaaa ttgcagtagc
      541 tatgagtgat gcaaaaatag ctattaaggc agcaggggat tcatcacaaa aggcatttga
      601 gcaatttgac ggcttttttg gatcgtttac aaattcaagt caaagtattc ggaacgcaat
      661 tgacgaatta aaacgctatg aatcaaaagg taaagatgtt ggtgccgtaa taaaagaact
      721 tggaggcaca tatggtggtg caattgccga agttaatgcg ctggattctg tgacaagcga
      781 aatgtctaaa acgcttggta ttactcaatc tgaggctctt ggtttgataa aactgttggc
      841 tcaattagag caagacaaaa gccctgataa tattaaatta ctcgcgatag ctttatctga
      901 cttaagcgat aaaaatgggt gggcgaacga agagctaaat aagctaacca gaacgataaa
      961 cgataattca gtatctgctt tagatgccga aacatcagta agactcttag agtctgctat
     1021 aaaagacttg caaaatgcaa tccaaaactc ccaaggtgca ttggatggca atgtagcaaa
     1081 aatgaatcaa cttgcagatg cggcagaaag aaaagctgca acgataggca agactgagcg
     1141 tgaaactgct aaatatgcag ctacgctatt agctacaacc gatgaagcta aaaaaaatct
     1201 tgattccaca ttaagtagga ttgacgcatc atacgatcaa atcgaagcct atcaagccga
     1261 acaaaaagcc ttacaagata aaaagaccgc agatgcaaaa gctgccagag aagctgaagc
     1321 ggctgcaaaa aaatccgctc aagccaagaa gcaagttgtc gaacagttgc gacaaatggc
     1381 tacacagtac gagattgctg ttttgaggca aaagggaatg catctcgaag ccgtaaaatt
     1441 agaagctggt atgcgtttag gagctgcggc aacaaaagag caacgagaag aagctgaaaa
     1501 actagcacaa agtatttatg gagcaaccgc agcaagtcag aactttaacg ctatacaagc
     1561 ccaagcatct cctgttactg cattagacca acgacatcaa caacagctag ctcagatcga
     1621 agaatataaa atcttgtatc cacaaaaaat aatggaagca gaagctgcga gagctgcaat
     1681 cgaagaacaa taccgccagc aacgaatgga agctcaatgg gaggagtgga agcaagcgag
     1741 cgacggggcg agaatgtttg gtgatgcggt tgatgctgtt ggttcaagtg caacaagcac
     1801 aattacgggg ctactaaatg gcacaatgtc cgtgcgtgat gctttcgcat caattgcaaa
     1861 tacgatctta aatagtgtag tacaaagcct tgtcgaaatg ggtatggctc aagttaagca
     1921 aatgattatg gggcaaactg ctgccaaggc ttctatggcg gcgcaaatgg tgcaagctaa
     1981 agcgttagct gcttcatttg cacccgcggc ctctatggtt tctcttgcca cacagggggc
     2041 gaatgctatt cccgctcaag ctgcgatcac gtcaactatg agtatggctc aagtcgccgc
     2101 ggtgacaggt cgtaaacttg gcggccctgt atcagctaga cagatgtatc gtgtcggcga
     2161 gaacaatcag cccgaaatct tcaaagcgag caatgggatg caatatatga tccccggtca
     2221 aagcggtcgt gtattcagca acaagcagtc gcaaggtcaa ggtggaggcg aaagcaaaac
     2281 agtagctgtc atcgtaaatc aaaccaatca ctttagcagc gatgaagcca gtgcaaatca
     2341 agcggctgtt gcaaaagcat tgagcaatca aatcaaggct tccgtgagat tggaattgca
     2401 gtcacaaatg cgagctggtg gagttctagc gaggtaatca atgcaaacat ttaatttcaa
     2461 ggttgagcaa gactacactg ttcaaaatga gcccagtgtc gtcatactaa aatttgccga
     2521 tggttacgag caaaccgctc ccaaagggtt aaaccacaat ctgaaaaaat accaaggcat
     2581 taccgtaaaa gcgaacaaag cagaagcggt gaagattcag caatttctca atgctcacgg
     2641 tgggtataag aaattcaact ggcgcgatag aacaagcgat gagacggtaa cggttcgttg
     2701 cagaagctgg agctccacta aattaggtgc agtcattgag tttacactta atttcgatga
     2761 ggtgatttaa tgccaaaagc cccccccaaa aaaatggcat cagagttgat aaaactcgaa
     2821 caagatgccc tgattgagct gtgggagata gatctcactc acatctactc tagctcaaac
     2881 ccaaatcagc gcggagagat attccgcttt cacaatggcg tgagccaaac acaacagaac
     2941 atctggtggc aaggcaatga ataccaagca tacccgattg ccgccgatgg ttttgagatt
     3001 tcgggtcaag gaccgtcaaa tcgtccaaca ctcactgtct ctaacctgta cggtgttgtc
     3061 acggtattag tagaagattt cgggcaaccc gtagaggcga aagtcagcag tgaagagact
     3121 gtagatggca atatccaaat gacggtggaa ctgctgaaaa aaatggatca aatcgccgat
     3181 caacgctacc gtagaaatca gttaaatgat ttaagaacag gtggaacatt atctaaatag
     3241 gtgaagtatg ccaattagta tttctaacca aatgaaacta gatcttgcca aacttgagca
     3301 aaatgcaatg ctggacttgt acgaggttga tttgcgtaaa ttgcaagaca aaaacggcaa
     3361 tgctggtag
//
LOCUS       DANLXB010000226         3353 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLXB010000226 DANLXB010000000
VERSION     DANLXB010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            313..690
                     /locus_tag="PXD41_002381"
     CDS             313..690
                     /locus_tag="PXD41_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6289865.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            1420..2196
                     /locus_tag="PXD41_002382"
     CDS             1420..2196
                     /locus_tag="PXD41_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6289866.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            2800..3294
                     /locus_tag="PXD41_002383"
     CDS             2800..3294
                     /locus_tag="PXD41_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6289867.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
BASE COUNT         1133 a          545 c          624 g         1051 t
ORIGIN      
        1 ggcacacttc tttcttcagt gtctttagcg ttgcgattta aatttaatta cattttttat
       61 aggaaagaca atagaaatga agatcaaaaa atatgtattt cacctgactt atacaacact
      121 tatctgcccc ttacctaggg tattcgcaga ggaaggttat atgttagata cggttgaggt
      181 taaagcccaa gcaataaaaa aacagatgaa gttttcatta aaacaggggc aataagcacc
      241 cgagataaaa tcttggaatc aaaccaaagc ttagagacta ttgttcgttc tatgcctggc
      301 gcatttacac aaatggataa atctcaaggt gtggtttctg ttaatattcg aggaggttct
      361 ggatttgggc gagctaataa tgcagtaggc ccaaattata tgggaatgct cgctggcaaa
      421 taccaattca atgactctac ttggatagga gcattatttg ggcatagttg gcgcaaaatc
      481 tctcaaaatt ataaaatagg aggcggacga aaagttacgg atagctcgat tgaccttagt
      541 aaaattgatg atctagataa agaaagttct accacctcac cgttcaatgc agctcattta
      601 aaacaaaaac caatgagtcg tatggctaaa ttggaatatg gcgataaata ccaaaccatc
      661 acactattac caaagtcagg tagcgggtag acatttaaaa aaccaaaaca accagttaaa
      721 ttatcgtttt cacttgcccg agtcaccttg gttagatgtt caagtggcct atgcggaaaa
      781 tcaaggcaaa caaaactaca acaaagggag ctgaattaat aataaatatt taattcaagg
      841 tttggcaatt aacaacaaag cgacaacctt aaatttgagt aacaccttta aagtgtctcc
      901 gtttaaagat ggagaatggg aagcaatatt aggttttaat cgtttaaaga accgctatag
      961 taaaaataga catcctgcgg aattaaacta taacttagag aatggcgaaa ccagcgaaaa
     1021 caacgattct gtaggaatga cagccgttcg taaatcgctt tatacttcaa ctttccagcc
     1081 tgatggcgaa cagaagttcg atacttttta tctcgacaat cactttaact atggtatatg
     1141 gggattggat ataaacgcaa atattaatac cgctcggttt attggtcagc gttttaaata
     1201 ttttcctttt gcgattagag aattggagtc agatattaga caggcaagta gaaataggca
     1261 gtttgagcat ttaaggtcat tacaatctca attagacaac ttgcaaaaaa acattgtaca
     1321 tatattccag atgaggattt tcctaatgat cctgaattgg gagagtttaa ctgtcctgat
     1381 gtcaattttc ctcatacagc aacaggaaaa cataaacgaa ttaattattc agcaaccttg
     1441 tctgcttata ttcacgattt attcacgccc tttattagtt attctcaaac acatcgagcc
     1501 cctaatatta aagaaatatt cttctctaat ttaggtgact atggtgtaaa taccgcacta
     1561 caaccagagc aagcgaaaac aacacagttt ggtattaatg gattcaaaga acgggtattt
     1621 agtgaagaag ataaattagg atttaaagtg ctattttata acactcactt aaaaaactat
     1681 atttataatg tacaacatac cgctgttggt agtgctccta gtttattcat tttccacaaa
     1741 aactatgaaa aaccagtaaa tatcaaaggg atagaattag aatttagtta tgatataggc
     1801 tctttctatg gcaacttagc ttatgctcgt caaaatacga atcaacccgt atcctttaca
     1861 gatgcaagtt caagggtaga tgccgcttct cattatggtt ttaaaactca aggttttggt
     1921 gccagcaaaa tttcagcgtt accaagagac tatggctcat tggagttagg gacaagatgg
     1981 tttgatcaaa gactacaaat tggcggagtg gcaaaatatt acggaaaaag taaacgtatt
     2041 gcgatagatg agtttaacta tacttattat cctggaacac atattgtgaa agaaactcat
     2101 cggcttgaag aaaccgtaaa taaacaacct attattgttg atttttacgt gagctacgaa
     2161 ccaatcaagt cgcttatatt aaagttagaa ctataaaatg tctttgacaa aaagtacatt
     2221 gatcctcttg atgctaataa tgatgcagca agtcagaggg tttacaattc tgatatcagt
     2281 gatgaaccta tttatacgct caataattat gcaagaggga gaactatagt gtttagcaca
     2341 agttataaat tctaaatggg gttgtcctag ataagctagc ttaaatttcc tttaactaat
     2401 tatttggcat agtgactaaa attgagtctg cacagtaggt taaaacctta taatataagg
     2461 atttaaccca gatggtgcaa gcgtccacgc ttgtgccagt taattcctgt tctgaaagta
     2521 tttcagtcat aagataaaag cctaaatcag ccaagtaaaa tttggtttat ttgggctttt
     2581 gtttttggca caagcgtgga cgcttgcgtc atcattttat ttatccatcc attgctatca
     2641 tttcagtatt tctttggctt atcacaagcg gttaaatttt atcaacactt tgcaagtttt
     2701 aatgattttt gcgatctaga tcgaaaaagt tatattggct tgtggaattt aattttgaat
     2761 agggtatttt tcttattcct ttttaagttg agaaaggcta tgagccgaaa atataaattc
     2821 cacgaaaaga gcggtgctta ttttgtcagt tttgcaactg tttattgggt tggtgtgttt
     2881 gtgagagaga tttattttca ggtaattgtt gatgccttag attactgcag aaaacataag
     2941 ggaatgattt tgtatgccta ttgtattatg ccaactcata tccatttatt atttcaagca
     3001 gaaaatcaaa atccttctga tttaatacga gatttcaaaa cattcaccgc taaaatactt
     3061 attcagagaa ttaaagataa tttgcaagaa aaccgtcggg aatggttgct gtggatgttt
     3121 tctcgggcgg ctgaacgacg ttgtaatgta aaacaatatc aattctggca acatcataac
     3181 caacctattg aaatctattc gcagaaattc tttgatgaaa agttaaatta tattcatcaa
     3241 aatccagtgg taagtggttt tgtgtctgag ccttgggaat ggaaatataa ttgaaataaa
     3301 ctgcttgtat ttttgcgatc tctgtcgaaa aattgtgaat ttttacttgt ctg
//
LOCUS       DANLXB010000227         3347 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLXB010000227 DANLXB010000000
VERSION     DANLXB010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            5..1981
                     /gene="cpdB"
                     /locus_tag="PXD41_002384"
     CDS             5..1981
                     /gene="cpdB"
                     /locus_tag="PXD41_002384"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL6289868.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2054..>3347)
                     /locus_tag="PXD41_002385"
     CDS             complement(2054..>3347)
                     /locus_tag="PXD41_002385"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL6289869.1"
                     /translation="FILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSGEHIA
                     QLHQLGYLPIRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQPITS
                     ASIAFAYRKALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSFLGTD
                     TIPAISFVTAYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLSIVAD
                     TTDFWHNITVNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERKGLIE
                     CLWDIFGGSINQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVFGVGA
                     QTYQRNTRDTLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDHYVDE
                     LTALDDFSDDLLEVVFENGKLVKSTNFDEIRQNIAQQF"
BASE COUNT         1108 a          639 c          682 g          918 t
ORIGIN      
        1 ttttatgtta aatagaagaa aatttatcca gcttggtgca actgcaatgc ttgtattggg
       61 gacacaaccg tctgcatttg cacaaacagc caaaaataaa gctggcttgc gtgtcatcgc
      121 cactacggat attcacggtt tcttaactga ttttgattat tacaaagatg ctccaacaga
      181 aaagtttggt tttacccgta cggcaagcct aattaaacaa gctagagcag aagttaaaaa
      241 cagtgtgtta gtcgataatg gtgacttaat tcaaggtaat cctatttctg actaccagtc
      301 aaccaaaggt gcaaaagagg gcaaacctga accttcgatt atggcattaa atgcgatgca
      361 atatgaagtc ggaacgctgg gaaatcatga atttaactac ggtttaagct atttagataa
      421 tgctattaag caagcaaaat tccctattgt caatgcaaac attgtgaagc cggggacaga
      481 tgaaccattc tttacacctt atgttattca acaaaaagaa attgtagatg aaaaagggaa
      541 taagcatacc attaagattg gttatatcgg ttttgtacca ccacaagtga tgatttggga
      601 taaagctaat cttgaaggaa aagttgaagc tcgagatatt gtgaagaccg cacaaaaata
      661 tgtgcctata gtaaaaaaag aaggggcaga tattgtcgtt gcattggcac ataccggccc
      721 ttcagacgaa ccctataaag aaggcgctga gaactgtgcg ttttatctag ctgatgtaaa
      781 aggtattgat gcagttattt tcgggcattc acatcgcctg ttcccaaata aagaatttgc
      841 aaattcacca aatgccgata ttgcaaaagg aacaatgaaa ggcgtaccgg aaagtatggc
      901 tggctactgg ggaaataaca tcagtgtgat tgatttaagc ttggccgaaa acgatggtaa
      961 atggggcgtt gtggacggta gagcagagtt gcgtccaatt tataatacgg aagagaaaaa
     1021 agcaaccgtt gagaaccacc ctgaaatcgt tgcattatta aaagaaaccc atgaagcaac
     1081 ccgtcaattt gtgtctcaac ctatcggtaa agcaactgat aatatgtata gttaccttgc
     1141 gttagttcaa gatgacccta ccattcaaat tgtgaaccaa gctcaaaaag cgtatgtaga
     1201 aaatgtggta aaaggcttgc cggagcttgc aggattacca attctaagtg ccggagcacc
     1261 gtttaaagcc ggtggacgta aaaatgaccc gacaggctat accgaagtcg ataaaggcga
     1321 attaactttc cgcaatgcgg cagacttata cctttaccca aataccttag tggtggttaa
     1381 agcaacagga gcagaattaa aagagtggtt agagtgcagt gcaggaatgt tcaaacaaat
     1441 tgatgtcgct tcggataaac cgcaatattt actggattgg acaggtttcc gcacctataa
     1501 ctacgatgta attgacggtg tcagctatca atttgatata acccaaccgg ctcgttatga
     1561 cggcgagtgc aaattgatca accctaattc gcaccgtgtg gtgaacttaa cctttgacgg
     1621 caaaccggtt gatcctaaac aagaattctt aattgccacc aacaattacc gtgcttatgg
     1681 agcaaaattc ccgggaacag gcgataaaca tattgtgttc gccgcaccgg acgaaaaccg
     1741 ccaagtgtta gcgaattata ttaccaccga aagtaaagct cacgggcagg taagtccgaa
     1801 agcggataac aactggcgta ttgcaccaat tagctcaaat gcaaaattgg atattcgttt
     1861 tgaaacctct ccaacagata aagctaaagc tttcattaag gaaaatgcac aatatccgat
     1921 ggagtatatc gaaaacgatg aaaccggctt cgcagtttac cgtattgatt taaccaaata
     1981 atcagagcta aatacaagcg gtctaatttg caaaaaaatt aacaaatttg accgcttgtt
     2041 tcattccatt tttctaaaat tgttgtgcta tattttgccg aatttcatca aaattggtcg
     2101 atttgaccaa cttaccattt tcaaaaacca cctctaaaag atcatctgaa aaatcatcca
     2161 gtgcggttag ctcgtcaaca taatgatcat aagagattac ttttactcgc cctttttgcg
     2221 atttttttaa gccgttatcg gttttaggag ctttgaaaat tgccttttcg acaccgttaa
     2281 ttgtaattga agtcgctttg attgcaaaac ccagcgtatc acgagtattg cgttgataag
     2341 tttgagcccc aacgccaaac acaatattgc tggaagcaaa accttttgcc gttaagccct
     2401 ctaaaatccg tatcatttta tcataagtga cgccgtcacc ataaattgcc ccaatatgcg
     2461 gattaagcac tttataacct ttttggttaa tactaccacc aaaaatatcc cacaaacact
     2521 caatcagacc tttgcgttcg tgttcaacgg gggaggaatt gttaccgcaa ataattgtaa
     2581 aaaaatcacc gctatcaggg cggataacca attttgctga ttccggtcga gctaaaattt
     2641 cttgttttaa taatggcaaa ttaacggtga tgttatgcca gaaatcggtt gtatctgcca
     2701 caatagatag catattattt ggatattttg ccattaaata acggaaagtc ggcagctcat
     2761 caacaccgtg tgaactcatc accgaatgtt ctgatgccgg aatagatgta ccgattaaat
     2821 gttgagaacc ataataggct gtcacgaatg aaattgcagg aatggtatct gtgcctaaaa
     2881 atgaggttag atgtccggca ccggagcttt ctgctgattc taaggaactc attccacgca
     2941 tagagaaatc gtgtgcctgg aagggtagat ggctattatc atcacaggtt tgctctgaaa
     3001 attcggctag agccttacga taagcaaatg caatggaagc tgatgtaata ggctgccata
     3061 atgacacatt aatcagggtt tccaaataat tagtcagcca aaaaaagctt gagtgagtgt
     3121 tttcaattgt cattaaagga actttcactg caacagattt tccttctgga atagctttaa
     3181 ttctgatagg taagtaaccg agctgatgca attgtgcaat atgttcgcca gagtcctcaa
     3241 tattcaatgt gtcagaaata aattgagtat attcagaaac aacgtcatgt tgtgagcgag
     3301 aaaaaaaatt atcgttaaaa taatgaatca agtattttaa aataaat
//
LOCUS       DANLXB010000228         3341 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLXB010000228 DANLXB010000000
VERSION     DANLXB010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1065
                     /gene="aroG"
                     /locus_tag="PXD41_002386"
     CDS             <1..1065
                     /gene="aroG"
                     /locus_tag="PXD41_002386"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL6289870.1"
                     /translation="DDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSIHKILHG
                     ADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPRTTVGWK
                     GLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFMSWGAIG
                     ARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKFGHSAIV
                     STAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQKQFKRQ
                     MDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDGCIGWED
                     SEKALFALAEAVEKRRNFAK"
     gene            1152..1844
                     /gene="tsaB"
                     /locus_tag="PXD41_002387"
     CDS             1152..1844
                     /gene="tsaB"
                     /locus_tag="PXD41_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL6289871.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(1861..2670)
                     /locus_tag="PXD41_002388"
     CDS             complement(1861..2670)
                     /locus_tag="PXD41_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6289872.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            2769..3320
                     /locus_tag="PXD41_002389"
     CDS             2769..3320
                     /locus_tag="PXD41_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL6289873.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
BASE COUNT         1067 a          620 c          723 g          931 t
ORIGIN      
        1 gacgatgtca gaattaccag tattgaagaa ttactaccac ctattgcatt actggaagcc
       61 tatccggcaa gtgatgttgc agcggaaacc gttgctaaaa cccgtcaatc aatccacaaa
      121 attttacacg gtgcggatga tcgcttatta gtggtgattg gaccttgctc cattcacgac
      181 ccgaaagcgg cattagaata tgcacaaaaa attaaagcaa tgcgtgctga tccgaaaatt
      241 aaccaaaact tagaagtggt gatgcgtgtc tattttgaaa aaccccgtac aaccgttggt
      301 tggaaaggct taattaacga cccttatttg aacgaaacct ttgccttaaa cgatggttta
      361 cgcattgccc gtaaagtatt atctgatatt aatgatttaa gcgtgccgac tgccggcgag
      421 tttttggata tgattacacc acaatatgtg gctgacttta tgagctgggg agcaattggg
      481 gcgagaacga ctgaatctca agtccaccgt gaattagcct ctggtttatc ctgtgcggta
      541 ggttttaaaa acggcacgaa tggtagtgtg aaaattgcat tagatgcaat ttcttccgca
      601 aaatcgccac accatttctt atcggtcact aaattcgggc attctgcgat tgtttcaaca
      661 gcaggaaatc ctgactgtca cattattttg cgtggtggcg atagcgcaac caactacgat
      721 gctgactccg ttgcagcggc ttgtgctgcg attgagaaat ccggcggacg tccacacgtg
      781 atgatcgatt tcagccacgc taacagccag aagcagttca aacgccaaat ggacgtttgt
      841 gctgatgtgt gcaaccaaat tgcaggtgga tcagacttta tttcaggtgt gatgattgaa
      901 agccacttgg tagaaggtcg ccaagactta attgaaggca aaggtttaga ggcgttagtt
      961 tacggacaaa gtattacaga cggctgcatt ggctgggaag atagtgaaaa agcgttattc
     1021 gcacttgctg aagcggttga aaagcgcaga aattttgcaa aataatcttt tcttgaaccg
     1081 agggcgaata taattcgccc tttatttgtt taaccttaaa gcaaatttaa tttattcaaa
     1141 ctaaacatat gatgaaaccc agcattcttg ctttagatac tgcaacagag gcttgctctg
     1201 tagcgttaca gtataacgga aatatcacgt tcttagatga aatcagccct cgttcccata
     1261 ctcaacgtat tttgccgatg gtagatgaat tacttaatca agccaatatc gaactcaaag
     1321 aagtaaatta tttagtattc ggacgtgggc cgggcagttt taccggtgtg agggtcggtg
     1381 taagtgtggc acaagggttg gcaatgggag cgaatttgcc ggtggtagct gtttctaact
     1441 taaaagcaat ggcagaagaa gcataccaaa aattaggtgc aacaaaggta attgccttaa
     1501 ttgatgcccg aatgaatgaa gtttactttg ctcaatttga acgaaagggt gaagaatgga
     1561 atgaagtggt ggctgaacaa gtctgttcgc cagaagtcgc aataagtcaa ttccaaatga
     1621 gtgaagagac tgtggtggtt ggcacaggtt gggcggcata ttcgcaattt tctgagcaaa
     1681 atctaccgct tgttatcagt gatattacct tgccttccag ccgatatatg ctttcgattg
     1741 ctgaaactga gattcaaaaa ggcaatatcc aatctgcttt tgaaatagaa ccggtgtatt
     1801 tgcgtaatga agttacttgg gaaaaactac ctcataagca ataatctatt gaacttatgg
     1861 ttaagtgaat aaatattgca aaaagcccat ataacaggca atagtgaata ggattacacc
     1921 aagtaattta gtagttaatt cgggactcaa gatattgcgt aatttcattg aaaaatagac
     1981 agtaaagaga gaacttatca ctacggtgcc gacaattgca aaattcacat agccgatttg
     2041 ccaagttgct aaggttgaat tcaacacaaa agggcgggat aagtagccat ataaattgcc
     2101 gattccgcca atcaccatca tatagttagt ataaactgca acctgtttcg gtgaaaccga
     2161 gcgtatttgc gtgacaatcg gagccataat cgaaccgccg ccaatgccgg taatacctgc
     2221 aattaaaccg cctaaactgc acattgtggc attagatact gcttcttttg gtttaggtgg
     2281 tactattgct ttaactcttg gtttgtgaaa tagggtttta aatgaaagtg tcagcagggt
     2341 tagaataaag atagcgataa tgctgttatc agagaaaaga aaactgagtt caaacccaat
     2401 ttgtacgcct aacatcatcg caagtgacca aatcaacaca ttttttcgat tgatttttat
     2461 ctgttgatgg tggaataagc ataaattgat agtggctgaa ccaatcacaa tggtaagaga
     2521 gcaggcggaa atcacttgga gaggcagttc aggaaacagt gaatgtaaaa tcggcatcat
     2581 taaaacaccc ccgccaatcc caaatagtgc agaagtgata ttgactataa tgccacaaat
     2641 gatcaaaata attatcacgg tcattgtcat aatccatctc ctaaagtgtg ataagtatgc
     2701 aaaattttct aaataaagga ttatgatcgc aatcatatat ggaaaaaata aaataataag
     2761 gataatcaat gaacaatatg ccaacccccg aacaattgat gtcttgccaa ttaagtgtaa
     2821 tgtctgatct agaaaaagga gtcgtcattt attctcaggg ttatcacgcc agagaatttt
     2881 attttttaaa aagcggatta atagggctgt accatatgct tgaaaatggt aaagagagct
     2941 tggtgagggt atataaagcc aacgattatt ttgggtttag aacctttttt ggcgataatc
     3001 gctaccattg ctcggctcgg gtgttacagc cggcagaatt gatacgtatt acccccttaa
     3061 atttcattga gttttggtcg aataattccg ccttaattat ctctctgtta aaacagctct
     3121 cgacagaatt acaagacgca gagcatcgtt tatcaatggt ttcctatcaa aaaacgcaag
     3181 agcgggtaat gaacagtatt cattatttac accaacgtta tcccaattat cactggacta
     3241 accgtgaaat cgccgaattt gcaggttgtg aaaccgaaac agccattcga ttaaggcgag
     3301 aattaaagaa aatcagttaa attgtcataa attattcata g
//
LOCUS       DANLXB010000229         3275 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLXB010000229 DANLXB010000000
VERSION     DANLXB010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            17..1822
                     /gene="oadA"
                     /locus_tag="PXD41_002390"
     CDS             17..1822
                     /gene="oadA"
                     /locus_tag="PXD41_002390"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL6289874.1"
                     /translation="MAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGYWSLETWG
                     GATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVVDKFVERS
                     VANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTWLDVTEQL
                     LEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMALLKAIEA
                     GVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRNVRKKYAK
                     FEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVREDLGNIPLV
                     TPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRVLEGAEPI
                     TDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKYLENRNNP
                     SAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGGDITNIAP
                     TPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDVLLILEAM
                     KMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            1832..3136
                     /locus_tag="PXD41_002391"
     CDS             1832..3136
                     /locus_tag="PXD41_002391"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL6289875.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
BASE COUNT          895 a          732 c          795 g          853 t
ORIGIN      
        1 aactcaaccg aaaaaaattg cgattaccga tgtggttttg cgtgatgcac accaatccct
       61 ttttgcgact cgtttacgct tagacgatat gttaccgatt gcctccgagc tggataatat
      121 cggctattgg tcgttagaaa cttggggcgg ggcaactttt gacagttgta ttcgtttttt
      181 aggcgaagat ccgtgggtgc gtttacgtga gctgaaaaaa gcaatgccga aaaccccaat
      241 gcaaatgctg ctacgtgggc aaaacttatt gggttatcgt cattatgccg acgatgtggt
      301 agataaattt gtcgagcgtt cggtggcaaa cggtatgagt gtgttccgtg tatttgatgc
      361 cctcaacgac cctcgcaata tgcaagccgc attacaagcg gtcaaaaaac acggcgggca
      421 cgcacaaggt actttgagtt acaccaccag ccctgttcat accctacaaa cgtggttgga
      481 tgtaaccgag caattattgg aaattggcgt ggattcgttg gtgatcaaag atatgtcggg
      541 cattttaacc ccaatggcag cctatgaatt agtcagcgaa attaaaaaac gctacgacgt
      601 tgagctacat ctccattgcc attcaaccac cggtatggct gaaatggcgt tgctcaaagc
      661 gattgaagcc ggtgtcgatg gtgtcgatac ctccatttca tcaatgtccg gcacttacgg
      721 tcacccggca accgagtcta ttgtcgccac acttcaaggc acgccgtatg aaaccggctt
      781 gagcattcca gctctggaga aaatctctgc ctacttccgt aacgtgcgta aaaaatatgc
      841 aaaatttgaa ggacagctcc gtggtataga tagccgtatt ttggttgccc aagtgccggg
      901 tggcatgctg accaacctcg aaagccaact caagcaacaa aatgcgtcgg ataaattaga
      961 cttggtttta caagaaattc ctcgtgtgcg tgaagattta ggcaatattc cgttggtgac
     1021 accaacctca caaattgtcg gcacacaagc ggtgatgaac gtattaatgg gcgaacgtta
     1081 taaaactatc gccaaagaaa ctgcaggtat tttaaaaggc gaatatggtc gcacaccggc
     1141 accggtaaac aaagccttgc aagacagagt gcttgaggga gcagagccga ttaccgaccg
     1201 cccagccgat catcttccgc cggaactgga aaaattagtg gcagaagtga ctgcaagtgc
     1261 aaaagaaaaa ggcattacgc tatctgaaaa catgattgat gatgtattga ttgtggcact
     1321 cttccaacaa gtgggctgga aatatttgga aaaccgcaat aatccgtctg cctttgagcc
     1381 agtgccaagt gctgatgaag caaaaccggc acaagcctcc gctgcttctg caccaaaagc
     1441 ccaaacacaa tccggttcag ccatttatac cgttgagctt gaaggcaaag cctttgtggt
     1501 gaaggtgagt gaaggtggcg atataaccaa tatcgctcca acaccagcaa caccggctcc
     1561 gcaagcggtc gattctgcac caaaatctgc aaatacgcta tcagccaatg ccgaaccggt
     1621 gaatgctcca atggcaggga acattttgaa agtggaagtg aaagaggggc aacaagttgc
     1681 tgaaggcgat gtgttactga ttcttgaagc aatgaaaatg gaaacccaaa tttgtgcggc
     1741 aaaatccggc acgattcaag gcattaatgt caaacaaggc gatgttgtgg cggtaaatga
     1801 tactttaatg agtattgcct aggagtccgg tatggaaagt attattgcac tttttaaagg
     1861 tatggggcta atgcatttag aactggggca agcgattatg attgtcatca gtttagtgtt
     1921 gctttggctt gccatcgccc gaaaattcga accgctttta ctactgccta ttggctttgg
     1981 tggtttgatg tcaaacattc cggaagcagg tatggcaatg acggcattag acaatttact
     2041 ccacagcggt tctgccgagc aactggcaat tattgctgct aaggtaaata gtacaagcct
     2101 tgatctgcat tcgattaaag atgccatcgc actggctgct ccctctgttc aaaatgagct
     2161 tgaagtaatg gctggcgata tgggctatac cgccggtgtg ttggcattat tctataaagt
     2221 tgctatcggc tacggcgttg ctccgcttat tatctttatg ggtgtcgggg cgatgactga
     2281 tttcggccct ttacttgcca accctcgaat gttaatgctt ggggctgcgg ctcaatttgg
     2341 gatttttgct accgtactgg gtgcattagg gctaaactgg ttaggcatta tcgacttcac
     2401 attgccacaa gccgctgcga ttgggattat cggcggggca gatggcccga ccgcgattta
     2461 tcttgccagc aaacttgccc ctgaattatt aggtgcgatt gcggtagcgg cttattctta
     2521 tatggcgtta gtgccactga ttcagccgcc gattatgaaa gccttaacca ccgagcaaga
     2581 acgtaaaatc cgaatggttc agctccgtaa tgtaagcaac cgtgagaaaa ttattttccc
     2641 tatcgtgttg ctattattag tggcactctt actgccggat gctgcaccgt tattgggaat
     2701 gttctgcttt ggcaacttac tgcgaaccag tggcgtagta gaacgcttaa acgacaccgc
     2761 ccaaaatgcg ttaatcaata tcgtgacgat tttcttaggg ttatcggtgg gggcaaaatt
     2821 ggtcgcagac aaattcttac aaccgcaaac actaggcatt ttagtattgg gcgtgattgc
     2881 ctttgggatc ggcactgcaa gcggtgtgat tatggcgaaa ataatgaacc gctttagtca
     2941 gcacaaaatc aacccactta tcggctcagc gggtgtttct gccgtgccga tggctgcacg
     3001 ggtatcaaac aaagtcggac aagagtacga taaacaaaac ttcttgttaa tgcacgcaat
     3061 gggcccaaac gttgccggcg tgattggctc tgcgattgca gcgggggtga tgttgaaata
     3121 catttcaacg atgtaaatcc tcatttgcaa aaaacctccg aaaaataacc gctctcggag
     3181 gttttttcta aaaataccgc ttaccaacac tcttacaata cgaaaattcc gctgtacatt
     3241 cttcactaat tgccgtagta tccatcttac ttaat
//
LOCUS       DANLXB010000230         3262 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLXB010000230 DANLXB010000000
VERSION     DANLXB010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..603)
                     /locus_tag="PXD41_002392"
     CDS             complement(<1..603)
                     /locus_tag="PXD41_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6289876.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTES"
     gene            complement(649..1221)
                     /gene="rpoE"
                     /locus_tag="PXD41_002393"
     CDS             complement(649..1221)
                     /gene="rpoE"
                     /locus_tag="PXD41_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL6289877.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            complement(1443..2987)
                     /gene="leuA"
                     /locus_tag="PXD41_002394"
     CDS             complement(1443..2987)
                     /gene="leuA"
                     /locus_tag="PXD41_002394"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL6289878.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
BASE COUNT          885 a          718 c          581 g         1078 t
ORIGIN      
        1 tgattctgta ttggaagaag tttgtgcttt ttgcttttct tcctcagata aggttaaatt
       61 tttaacgtta ttagtacggc gttgtaactc atggttttct aataacgcat taatcttacg
      121 ctgttgaagc tctaactgtt cttctgttgg ttgatcttga actggcgcat tataacttac
      181 cgcttcaact gaattgctaa atggcaatgt ttgtaatact ggttgttgcg tttgagctat
      241 ttcatcactc gcattcattg aattaacccc taataccgca actaagcaca ctgaagctgc
      301 aataccggct tgcataattg gagttcccca acgcttgagc ttgagcaata agcctttagg
      361 tttctctaca tttgcttgag attcaatttc ttcattttcc agtaatgctt ccattttagc
      421 agagaaatct ctccctaaaa tgatctcatc accttgcatc acactacgaa tagtgtgata
      481 acttgcccat ttttgctgta attcagggct gttagttaat gtttctacaa atgctgtatc
      541 aacattttgc ccatccatat aagctgaaag gcgttcattt tgttgagtga tgcgttcttg
      601 cataattgac tccaatgatt taaatctctt ctaaaataat ctttctatct attgcataag
      661 tggcttgatt ttagcatcaa tcgcttccct tgctcggaaa atacgggaac gtacagtacc
      721 aaccggacat tccatcactt ctgcgatttc ttcgtaactt agcccttcca attctcttaa
      781 acgaatggcg gttttaagct catcaggtaa attttcaatc gtatcaaaca cgactttctt
      841 taattcctcg gataatatca aattctctgg cgtatcactt tcacgaagtt gcgcgcctac
      901 atcataactt tcagcgtctt cggcaagaat atcttctttt ggcggtcttc tgcctaaaga
      961 ggttaaatga tttttcgcag tattcactgc aatgcgataa agccacgtat aaaaagcact
     1021 ttcgccacgg aaagactcta aagaacgata ggctttaata aaagattctt gcacaatgtc
     1081 cggaatatca tctcttgcaa cataacgagt cagcaaaccg gctactctat tttgataacg
     1141 tacaacaagt aaattaaatg cttttttatc acctttttgt gctttttcga ctaattcttg
     1201 gtcggtgatc tgttcgctca actgcggact ctcctaaata tcaatatgtc attttccatt
     1261 gcacactttg ttagtgtgtg ctttatgaca aaagttcaaa aaatttgaaa aattgtgtaa
     1321 ttttttacat tcctagataa aacctactta ataaactaag caagcggtcg gattttagcg
     1381 aaattttgca aaaatttcaa aaaatccgac cgcttgtcta tgttatgctt tcgctctata
     1441 agttatttct tcgcttttaa atctgccact ttttgtgaac ggtaaatcgc attaatggcg
     1501 tgaattaaag ctcgggctga agattccaca atatcggttg ccaaacccac accgtggaat
     1561 tttcgacctt catattccac tacaatatcc acttgcccta atgcttctgc tccttcgcct
     1621 ttcgcagtca gattatagtg cgacattttt agctccattc ccacaatgtt cataatggca
     1681 ttgtaagttg cctcaactgg accatttccc ccttgagatg tagcactttg acgaacgccg
     1741 tctaattcca cctgtacaaa agccgaagcc ggtaaaccgc tgattagttg ggtggtaatt
     1801 acatctaatt ttaagcggtc ttcatcgcct tgctgcatat caatgaaggc aagagcttct
     1861 aagtcataat caaacacttg ccctttttta tcagcaagtt gcaagaaggc ctcataaagt
     1921 ttatctaaat cgtaatccgt ttccgtataa cccatatcag ccatatgccc tttcaccgct
     1981 gctctacctg aacgggcagt taaattcagc ttctcttttt tcaagccgat ggtttccggc
     2041 gacataattt cataagtatt tttatttttc agcataccgt cttggtgaat acctgaagag
     2101 tgagcaaagg cattgctacc gacaatcgct ttgttcggct gaatcggcat attgcaaagc
     2161 tggctgacca tttggctgac acggtgaatt tcttgggtat taatgcgggt atcaaccccc
     2221 ataaattctt ggcgggtttt aattgccatt accacttctt caagagcggt gttaccggca
     2281 cgttcgccaa taccgttgat agtacactca atctgtctcg ctccgttttg caccgctgtc
     2341 aatgagttgg cggtagccat acctaaatcg ttatggcagt gaacagagac aatcgcttta
     2401 tcgatattcg gaacacggtt catcacttgg tggataatat tgccgtattc attcggtaaa
     2461 cagaaaccga ctgtatccgg aatattcact gtggttgcac cggcattaat ggcagcttct
     2521 acaatgcggc agatgttatc aattccagta cgcccagcat cttcacagga aaactcaaca
     2581 tcatcagtat aatttctggc gcgttttacc gctgcaaccg ccatttcgac tacatcatca
     2641 aatgaacgtt ttaatttagc ctcaacgtgt aatgccgagc tggcaataaa ggtatggata
     2701 cggaatgctt ctgctacttt taaggcttca taagctgcat caatgtcttt tgcaaccgct
     2761 cgggaaagcg ccgccacccg gctgtttttg atatgacgag cgatggtttg tactgattca
     2821 aaatcgcccg ctgaagaaac tggaaaaccg acttccatca catcaacccc taaacgttct
     2881 aaagcaaggg caatttgcaa tttttctttt acggttaaac ttgcttttaa tgattgctca
     2941 ccatcacgta aagtcgtatc aaaaataata atgttattgt tgctcataga agcctctttt
     3001 taggtgtttt tatttgataa aaaaagcccg cattttaagg tgcgggcaag aatgtggata
     3061 gtccatttac tttttccaat caatctttat cctcgcacaa aatacgataa cagagataat
     3121 cggagtaagg taaatttttc catgttgtgt tgtatgttta tgtttgcatt gttattcagt
     3181 agttgaggtg tatattatcc ttatccaaat caatgtcaat agcatttttc tcttcacgca
     3241 accgtttacc agcccattaa tt
//
LOCUS       DANLXB010000231         3259 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLXB010000231 DANLXB010000000
VERSION     DANLXB010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            61..1464
                     /gene="asnS"
                     /locus_tag="PXD41_002395"
     CDS             61..1464
                     /gene="asnS"
                     /locus_tag="PXD41_002395"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL6289879.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
     gene            complement(1564..2556)
                     /gene="epmB"
                     /locus_tag="PXD41_002396"
     CDS             complement(1564..2556)
                     /gene="epmB"
                     /locus_tag="PXD41_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL6289880.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(2610..3179)
                     /locus_tag="PXD41_002397"
     CDS             complement(2610..3179)
                     /locus_tag="PXD41_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289881.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
BASE COUNT          914 a          675 c          691 g          979 t
ORIGIN      
        1 cttgtagaat acggaacgtt tcttatatta aaactcacaa caaagaattt gaggtattca
       61 atgtctaaat ttccaacagt ttcggaaatc ctatccggca agatagcggt aggtgaagaa
      121 gcgacagtgc gtggttgggt gcgtacccgc cgtgattcaa aagccggttt atctttcttg
      181 agcgtttacg atggttcttg ctttgaccca attcaagcga ttattaataa cgatctacca
      241 aattataatg ccgaagtatt acatttaacc gcaggttgct ctgtggtggt gaccggtaaa
      301 gttgtggaat cccctgctga aggtcaagcc gttgaattac aagcaagtaa agtggaagtg
      361 cttggttggg tggaagatcc tgatacctac ccaatggcag cgaaacgcca ctctatcgaa
      421 tatctgcgtg aagtcgctca cttacgccct cgtacgaact taatcggtgc agttgctcgt
      481 gttcgtcact gtttagctca agctatccac cgtttcttcc acgagcaagg tttctattgg
      541 gtagcaacac ctgtaattac cgcctcagat actgaaggtg caggtgaaat gttccgtgtt
      601 tctacgctgg atttagaaaa tctacctcgt ggcgaaaacg gcaaagtgga ttttaaccaa
      661 gatttcttcg gtaaagaatc gttcttaacc gtatccggcc agttaaatgc ggaaacctat
      721 gcgtgtgcct taagtaaagt ttatactttc ggtccgacat tccgtgcaga aaactcaaac
      781 acaactcgcc atcttgcaga attctggatg atggagccgg aagttgcctt tgccgactta
      841 aacgacaatg caaaattagc cgaagatatg ctgaaatatg tgtttaaagc ggtgcttgca
      901 gaacgtaaag atgatatgga atttttcgtt aaacacgttg ataaagaagc gattagtcgt
      961 ttagaaaact ttatcaattc gccatttgct caagtagatt acaccgatgc gattgagatc
     1021 ttattgaaat ccggcaaaga atttgaattc ccggtgtctt ggggaatcga tctttcctct
     1081 gaacacgagc gtttcttagc cgaagaacac tttaaatcgc cggtggtcgt gaaaaactat
     1141 ccaaaagaca ttaaagcctt ctatatgcgt ttaaatgatg acggcaaaac ggttgccgca
     1201 atggacgttt tagctccggg aatcggtgaa attatcggtg gttctcaacg tgaagaacgt
     1261 ttagaagtgt tagatcagcg tatgaatgaa atgggcttaa accctgaaga ttactggtgg
     1321 tatcgtgatt tgcgtaaata cggtacagtg ccacactcag gtttcggttt aggtttcgag
     1381 cgtttaatcg tgtatgtaac cgggttacaa aacattcgtg atgtaatccc attcccacgt
     1441 gctccacgca atgcgaactt ctaatttgca aaaaagtaag agaatttaac cgcttgcaac
     1501 aagcggttaa aaaaggcgaa aattttacca ttttcgcctt ttgtttcttg atttctgttt
     1561 aagctaacct ttcaaaattt tatttggctc tttcgctatt tctcttgcca gctttggcac
     1621 aagatagcct gaagtgatac gctgtaattc tcggtaaatc tcaccagcct gttcatcttc
     1681 aatatagaaa tggctcgccc ctgccacttt atcaaataaa tgcaaatagt aaggcaaaat
     1741 cccatattca aaaagtttat cacttaacct ttttaaggtt tgagcattat cgtttacacc
     1801 ttttaacatc accgattgat tcagcaatac aacgccggct tttttcagtt gagccatttt
     1861 gtttgcaaaa acagcatcaa tttcattggc gtgattaata tgggtaacca acacgacatt
     1921 caagcgagat tttgataacc gttcacataa ttctgtcgta attcgattgg gaataacgac
     1981 cggcaagcgt gaatgaatac gcagggtttt gatatgcgaa atctgctcta attgcgttaa
     2041 tatccaatct aagtcctgat cttttgccat cagcggatca ccaccggaca gaatcacttc
     2101 ctccagctcg ggatgctcag caatataagt tagtccctgt tgccacacag ctttaccgct
     2161 tttcacttcc tcataaggga aatgacggcg aaaacagtaa cggcagttaa tcgcacaact
     2221 gttttttagc ataaataaca aacggttatg gtatttatgt aaaatattcg gtgctgggct
     2281 ttgttgctct tccaatggat ctaccacaaa cccttctgcc tcaataaatt ccgcctgtaa
     2341 agacattgct tgcaaaaaaa gcggatcgtt tgggttaccc ttttccattt tttcggcgaa
     2401 cattcttggc actcgaagag caaataattt acgggcagct atatcgccct caaaatcatt
     2461 tggattgagt tcaagaaatt gtaataagtc gatagggtta ttaaaggctt gagccagctc
     2521 ggttagccaa agcggtttga tttgaattgg ttgcattgaa tattgtagat acaaggggca
     2581 ggtttttgcc tgcccgcaaa taaaaataat tatggaatta agttacattg taatggcgtg
     2641 ccatttggat taaccattac agttggtgag gtttgtacac cttgtgcagc gactaggtat
     2701 tgcacgcctg aaatacaata acggcgataa ccatcggttt tttctactaa aaacggatcg
     2761 atttgaccgc caatactctt aaattctgca atagcaggaa ctgctccatt tgcaacattt
     2821 tgtgcagaat tgaccgcttg tgcatttgca tccgcaggct ggctaggctg atttgcatgt
     2881 gcatttgatg acatcatatc acctaaaata taaccggctg ctgcccccat cgctacattt
     2941 gccatcgtgc tgccttgacg cacttgtggc tgggcagttg cactgtttgg cgtattggca
     3001 aaagtagcat ctttttgttg cgtttgctga tttgtggttg atttttgaga agctaccggc
     3061 ttagttgcta ccgcttttga cgggctaact gaacggaagc tcccaccgcc acgttttgcc
     3121 tctgccacgg ttgcaacaga aacggctaaa atcgcagaaa gagtaatcag ttttttcatt
     3181 cgcattcctt atcaataaag tttgaaaaat tatagcaaaa atcgcaagag atctttcgct
     3241 aattttgtga atttaggtt
//
LOCUS       DANLXB010000232         3252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLXB010000232 DANLXB010000000
VERSION     DANLXB010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            87..1409
                     /gene="pepP"
                     /locus_tag="PXD41_002398"
     CDS             87..1409
                     /gene="pepP"
                     /locus_tag="PXD41_002398"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL6289882.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            1525..1710
                     /locus_tag="PXD41_002399"
     CDS             1525..1710
                     /locus_tag="PXD41_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL6289883.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            1839..3155
                     /gene="argA"
                     /locus_tag="PXD41_002400"
     CDS             1839..3155
                     /gene="argA"
                     /locus_tag="PXD41_002400"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL6289884.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
BASE COUNT         1024 a          570 c          738 g          920 t
ORIGIN      
        1 catctgtttt ggttaggctg aatttatgct gcgtttgtgc taaaataagg caggtttcga
       61 tatagatata ataaaaagga gaaataatgg atctcgctta tttggctaaa atgccacaag
      121 aagaatttac cgcacgccgt gagcgtgtgc ttgagcaaat gcaggataat tctgcgttat
      181 tggtttttac cgaatcggaa aaacgccgta atagtgactc tgaatacttg tttagacctg
      241 atagttactt ttggtattta accggtttgg cagaacctaa atcagccgta ttgctggtaa
      301 aaagcgaagg taaaacggaa agtattattt ttgtgcgtaa aaaagaccct ttaatggaaa
      361 cctggaatgg cagacgttta gggattgagg aagctccaaa aacgttacag cttaacgcag
      421 cttttgatat tgatgacatt gaaaccgttc ttgcaaaaaa attagaaaat ctgaccgctt
      481 gttattgtgc gttagggata caagagtggg gcgataatat tttgtttgca acatttgaaa
      541 aaatgaaagt caatcggcaa aaagtgccga caaccttgat tgattggcag ccaatgttat
      601 cggaaatgcg gttgattaaa tcagaatttg aaattgcctt aattcagcag gcgtgtcata
      661 tttcttcaat ggcacatatt cgagcgatga aacaagctcg cccgaatcgt tatgagtggg
      721 aaattgaggg ggaaattcaa cacgaattta gccgttttgg agcaaggttt ccggcatata
      781 attcaatcgt tgccggcggt gagaatgcct gtattcttca ctacaatgaa aatgatcagg
      841 tgcttaaagg cggcgattta ttactgattg atgcaggggc ggaatttgcg tattacgccg
      901 gcgatattac ccgaaccttc cctattaatg ggaaattctc cgaaccgcaa aaagagctgt
      961 acgaattaac cttaactatg caaaaagagg cgattaatct tcttgtgcca aacagctcga
     1021 ttaaagcggc aaacgataag gctgtacaga ttctcacgca gggcttggtt cgcttaggaa
     1081 ttttaaacgg tgatgtggaa agcctgattg agcaaaaagc ctatcgccaa ttttatatgc
     1141 acggattagg gcattggcta gggctagatg ttcacgatgt gggggattac ggcacggagc
     1201 gggatcgtcc tttgcagatt ggtatggtgt taactgttga acccggtatc tatattccta
     1261 aagatgcgga tgtaccggag caatataaag gtattgggat tcggattgaa gataatttgc
     1321 tgattaccga atacggcaac aaaaacttaa gcagcggttg ccctaaagaa attgcggatg
     1381 ttgagcagtt gatgcaatcg ttaaattaat tcgcaaattt ttgtaaaaaa atgaccgctt
     1441 gctttgatat tttggggaat ttagcttaag ctaacccgac acaaacacag tgtttgggca
     1501 atcacaacac gaaggagtgt ttatatgtat tttgaaattt acaaagatgc aaaagaagaa
     1561 tttcgttggc gtttaaaagc gggtaaccac gaagttattg caaccaacca agcttatacg
     1621 actaagcaag gttgtcaaaa aggcattgaa gcagttaaaa aagttacacc tgaaacagaa
     1681 gtaaaagatt taaccaaagc tgaagcataa tctataaagc cctgatatta tttcagggct
     1741 ttgttattta tgcaaatata atgcttaatt attcaattta aggcttgcgg atttttctaa
     1801 aaaagataat atgcgtttat attataaaga ggaaatatat gcaaaacaca gaactcgcat
     1861 tagctcaatg gtttaggcaa tctacacctt atgttaatat gcacagaggc aaaacctttg
     1921 tgattatgct tgatggcgat gttatcgaaa gcccgaattt tgtcaatatt atcaatgaca
     1981 tcagtctcct gcacagcctg aatatcaaat tagtgattgt atttggggca agaccgcaaa
     2041 ttaaccaatt gttaaaacaa aatcatattg agccggagta ttaccacaat atccgtgtga
     2101 ctaatccaca atcgctagaa tatgtgaaac aagcggtagg gaaagttcat tatgatttct
     2161 ttgcccgcct ttctttgcgt ttaccccatt ctgaagtgat taatgtagtc agtggtaata
     2221 tgattttagc tcagccgatt ggcgtggtgg atggggtaga ttatacacta agcggtaaaa
     2281 tccgtcgtat taatattgag agcattaagc agcaactggc acaaaattcg attgtattac
     2341 ttggtccgat tgccccgtct gttaccggtg aaatgtttaa tctgccgttt gaagatattg
     2401 ccacacaggt tgcaattaaa cttcgtgccg ataaattaat cggtttttgt gaagagcagg
     2461 ggattttaga tgaaaacggc aagccaattc cagattatct tccgcaagat ggcgaaacct
     2521 tgttacagca gttaatcgag cgtggcgaat atcacacccc gaaagctcgg tttttgcagg
     2581 cggcgatcac ggtatgccga gagggagtga aacgctcgca tttattaagc tataaagaag
     2641 atggctcatt gcttcaagag ttattctctc gtgatggtat tggcacacag ttctcaatgg
     2701 aaagctcgga acaggtacgt attgctaatt ccagtgatat tccgggatta ttggatttaa
     2761 tccgcccact tgaacagcag ggcattttag tcaaacgctc tcgagaacaa ttagaaatgg
     2821 aaatcacaaa ctacaccatt attgagcgtg atggtgtggt gattgcttgt gcggcactta
     2881 acccgtatcc ggaagaaaaa atggcggaaa tggcgtgtgt ggcggttcac cctgattatc
     2941 gtgattcctc aagaggggat attctactgg aaaatattca aaaacgggca gtgcaactgg
     3001 gaatggagaa actctttgtg ctgactacaa gaaccacaca atggttccaa gagcgaggat
     3061 ttaggctggc aggtgcccaa gatttacctc gctataaacg ggaaaattac aattatcaac
     3121 gtcgttctaa agtattaatt ttaccacttt ggtaaaatat tcaatgtttt tgaccgcttg
     3181 ttaccaagag aactataaaa ggagaactat gaaaaaacat caacccatca aaggggctat
     3241 ggcaattatt ac
//
LOCUS       DANLXB010000233         3212 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLXB010000233 DANLXB010000000
VERSION     DANLXB010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..844
                     /locus_tag="PXD41_002401"
     CDS             <1..844
                     /locus_tag="PXD41_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6289885.1"
                     /translation="AGVLFACINTLIPKLTSISPIDSNVIALVQYLAAFIFLVPSMNN
                     IGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGIALLMTSPLFVTIGSG
                     LFLKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAAAFFWAGYSLMVKKLS
                     RYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGFLILLGFFTALAQLAV
                     AKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGAAIIIAATIYITHAET
                     KQSN"
     gene            complement(923..1414)
                     /gene="ilvN"
                     /locus_tag="PXD41_002402"
     CDS             complement(923..1414)
                     /gene="ilvN"
                     /locus_tag="PXD41_002402"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL6289886.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(1407..3128)
                     /locus_tag="PXD41_002403"
     CDS             complement(1407..3128)
                     /locus_tag="PXD41_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL6289887.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
BASE COUNT          884 a          695 c          602 g         1031 t
ORIGIN      
        1 tgccggtgtg ttatttgcct gtatcaatac cttaattccc aaattaacgt ccatttcacc
       61 gattgactcg aacgtgattg cattggtgca atatttagct gcctttattt tcctcgttcc
      121 cagcatgaat aatatcggtt tcttctcttc attaaaaacc gagcattttg ggcaacactg
      181 tttccgtatt tttctatctg cgattggtat tcaatgttgg acaatggcac tcgctaacca
      241 attacctatt tggcagggaa ttgcgttatt gatgacttct ccattgtttg tgaccatcgg
      301 ctccggtctg tttttgaaag agaaagtgga taaaaagcgt tggattgcaa ccgcaatggg
      361 gtttgttggg gcgatgatta ttctagagcc ttggagcgat cattttgaaa tgattgcgtt
      421 actgccgatt gccgcggctt ttttctgggc aggttattcg ctaatggtga aaaaactctc
      481 tcgttacgat agcccaacta cgatggtcgc ttacctgttt attctaatta cgccttttaa
      541 tttgttgatt gcactcacga accttagccc tagtgggttt agtctgcctt cttggagcga
      601 tttcggcttt ttaatcttac ttggtttctt tacggcgtta gcgcaactgg cggtagccaa
      661 agcctacagt gtagcagatg cttcctacat tcagccgttt gattttatta aattaccttt
      721 gaacgtatta gccggttggc ttgtatttaa ctgggtgcca ccgggtaaat tatggctagg
      781 agctgcgatt attattgctg cgaccattta tattactcac gctgaaacta aacagagtaa
      841 ttagcaacaa attcacgcta cataaaaatc cctttatctc aaagataaag ggatttgcaa
      901 attttaagct aaaattgacc gcttacagag cgtttttatc gccacgagat agactaatca
      961 cgccagagcg aacaatctct acaatcgttg tttcttcttt aactgcctca ataaatgcat
     1021 tgagcttctc ggtagaaccg gataattgaa tggtgtaaag tttcggtgtt aaatctacga
     1081 tttgcccacg gtaaatatct accatacgtt tcagttcatc acgagatgaa cctgtagctc
     1141 gcacttttac caataacact tcacgctcaa cgtgttcata agcacttaag ttactcactt
     1201 taaacacatc aatgagtttg tgtagttgct tttcgatttg ttctaacacc tgttcttcgc
     1261 cttgcgcgac aattgtcata cgggaaaggc ttggatcatc agtaggggca acggtcaagc
     1321 tttcaatgtt aaaaccacgc tgcgagaaaa gggcaactac acgagataat gcacctgatt
     1381 cattttctaa taatacggct aatgttctac gcatctgttc tctccgtttt acttaacatc
     1441 atttcattca ttgctcctcc acgcacttgc attgggtaaa catgttccgt ttcatcgacc
     1501 aatacatcaa caaatacaag cttatcttta attgagaatg cctcagttaa ttttgcctcc
     1561 aattcagaag ggtggtcgat ttgaatccca acgtggccat aagcctctgc taatttagca
     1621 aagttaggta gagaattcat atacacctgt gaatggcggc cagagtaaat aatatcttgc
     1681 cactgtttca ccatacctaa gaaacggtta tttaagctga caatcacaat cggtgtgtcg
     1741 tattgctttg cggtggaaag ttcctggata ttcatttgga tactaccatc accggttaca
     1801 caaacaacag tggcatcagg gtgggcaaat tttaccccca tcgcagcagg taagccaaag
     1861 cccattgtgc ctgcaccgcc tgaattaatc caacgacgtg gtttatcgaa cccataatgc
     1921 aatgcagcaa acatttgatg ttgtccaaca tctgaggcaa cataagcctc cccattggtc
     1981 aacttgtgga tcattctaat cacttgttgt ggcttaatca catcactgtt ttcttcaaag
     2041 gctaagcaat tacgagcttt ccaagcatca atttgttgcc accaagcggt taaatctacc
     2101 tgattttttg caagattttc ctcacctaat aaagataaaa attcttccat tacatcctta
     2161 gcactgccta caattggaat ataagcttgt actgttttgg aaattgaggc tggatcaata
     2221 tccacgtgga tcacttttgc attcgggcaa tattttgcta agttatttgt tgtacgatca
     2281 tcaaaacgta ccccaatacc taaaatcaaa tcactttcgt gcattgcatt atttgcctca
     2341 aaagtgccgt gcatgcctaa catacctaaa tattgcttat cagaggcagg ataagcacct
     2401 aatcccatta atgaacaggt tacaggtaga tttagctttt gtgcaaactc tgtaatttct
     2461 ggcgaaccct ctgcactaat tacaccaccg cctacataaa gcactggacg ttttgctact
     2521 aatagtgctt ttaatgcttt tttaatttgc cctttatgcc cttgaactgt tgggttataa
     2581 gaacgcattg atacttcttg cggatattca tagggatatt tatttaatgg attgactaca
     2641 tctttaggaa tatcaataac taccgggcct ggtcgaccgg ttgatgcaat ataaaaggct
     2701 tttttgataa tttcaggaat ttcttctgta ttttttacta agaaactgtg ttttacaacc
     2761 ggacgagaaa tgccgatcat atcactttct tggaatgcat ctgtcccaat taaacttgat
     2821 ggaacttggc ccgacagtat tactaacgga acagagtcgg tataagcagt taaaatacca
     2881 gtaattgtat tcgttgctcc cggacctgaa gtcactagca cacagccgac tttacctgtt
     2941 gaacgggcat agccatcagc catatgtaca gcaccttgct cgtgtcgaac taaaacgtga
     3001 ttcaatccaa gtgtatgaat tgcatcataa atatcgagta cagagccacc cggatagccg
     3061 aaaacgtatt ctacgccttc atcctttaag gactgtacaa tcatttctgc accagaaagt
     3121 tttttcattg aatcctccaa caaaatagca ttttcttctc taagatggtt ggattttgca
     3181 gtaaaatttt attgatgtct agttcttatt at
//
LOCUS       DANLXB010000234         3210 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLXB010000234 DANLXB010000000
VERSION     DANLXB010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            117..1319
                     /gene="yedE"
                     /locus_tag="PXD41_002404"
                     /pseudo
     CDS             117..1319
                     /gene="yedE"
                     /locus_tag="PXD41_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            1355..1624
                     /gene="yedF"
                     /locus_tag="PXD41_002405"
     CDS             1355..1624
                     /gene="yedF"
                     /locus_tag="PXD41_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL6289888.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            1724..2068
                     /locus_tag="PXD41_002406"
     CDS             1724..2068
                     /locus_tag="PXD41_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL6289889.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(2131..3078)
                     /locus_tag="PXD41_002407"
     CDS             complement(2131..3078)
                     /locus_tag="PXD41_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL6289890.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
BASE COUNT          878 a          708 c          649 g          975 t
ORIGIN      
        1 atatatcgca agttttgtgt ataggaaatg aactaattac tgtgtcaatc agtccctttc
       61 ttcatcgtta taccctcttg caaatccgat taatctatcc ttagttaagg tgttttatgt
      121 tagcgatttg gcaaagtttt aaacaaaatt atctaatcaa atattggaat cctgttgcag
      181 cagtgatcgc agctggtatt atttcagctt attatttcgg cattactggc acttattggg
      241 cggttacagg ggaatttacc cgttggggcg gtcatctgtt aaatgctttg ggtgttgatg
      301 tttcgaactg gagctatttt caactcatcg gcttagacgg caccatcttt acccgcattg
      361 acggtgtgat gattctcggt atgtttgccg gctgtctttc tgccgcatta tgggcgaaca
      421 acgtcaaatg gcataatcag ccacataaaa aacggattat ccaagccttg attggcggtg
      481 cgttagccgg tttcggagcc cgtttagcaa tgggctgtaa cctcgcctct ctttttaccg
      541 gtattccgca attctccgtc cacgcttggt ttttcacctt tgcgaccgcc atcggcactt
      601 actttggggt aaaagtgact ttattaccga tgtttagagt gaaattagag ctgaaaaaag
      661 gggcagcaaa aatcaaagaa aacgatccga aacaagctaa tcgccgtttt tgggttggta
      721 tgctcatttt tatcacttat ctttctgctt ccctttatgt aatgcaatcc tcaatcaaac
      781 ttggttttgc aatgctttgc ggcttagcct ttggcttatt gattgaacga gcccaaattt
      841 gctttacctc cgctttccgt gacttatgga ttaccggacg ggcttatatg gcaaaagcaa
      901 ttattttcgg cattattgcc ggcacaatcg gcgtgttctc ttatattcaa ttaggtgttt
      961 cacctaaaat tttgtgggct ggcccaaatg ccattatcgg cggattatta ttcggatttg
     1021 gcattgtgct tgccggcggc tgtgaaaccg gctggatgta ccgttcaatg gaaggacagg
     1081 ttcattttat gtgggtcggc gtaggcaatg tagtcggttc aaccctgctg gcttactact
     1141 gaggcgactt agctccggtg cttacccttg attatgaaaa aatcaaccta ctcaaagaat
     1201 ttgggccggt tggcggatta ttcatcaatt atggcttatt aattctttgc ttaatcgctg
     1261 tagtttggtg ggaaaaacgc ttccttgcca aagcgaaagc aaaattagca actgcgtaat
     1321 ctttttaact tcaaccaaca agaggaaaat gactatggca ttcaccgttg tacaaaaact
     1381 agataaagat ccaaaagaca tcacgcctga ttacacctta gataccttag gcgaaccttg
     1441 cccttaccct gcgattacga tgttagaaac aatgccacag ctgcaaaaag gagagatatt
     1501 ggaactgtta agcgattgtt cccaatcgat taataatatt ccgattgata ctaaaaatca
     1561 cggctatacc ctattaagcg tggaacaaaa cggcactaaa ttacgctatt taattcagcg
     1621 ttaattgcaa aaaattcgca caaaacgacc gcttgtcgta aaatagcaac tatttaagag
     1681 ccttgtaacg caaggctctt ttattctaag aggtaaaaga aaaatgaata aatacgcttt
     1741 acttgcaata ttttggttta ttattggcat ttatgcttta ctttttcgtg aaagcactaa
     1801 tgatataccg ccttttccac attttgataa agtaagccat tttgccttat tctttatcca
     1861 gatctggtta tctgcaaacg cctttatccg ttcaaagaaa gggatacctt attttgggct
     1921 aataattttt gccttactct atgctttcac cagcgaatgg gctcaggcaa ccttcacctc
     1981 aacccgagaa ggttcttggc ttgatgggct agcagatatg ctaggagcct cactttcatt
     2041 attgctggta aaatattgca aaaaataaag cataaaagac cgcttgttat atggtttagc
     2101 catactacaa gcggtcattt tttaccaaaa ttatgccatc aactcatcaa tcaattcttt
     2161 cacacttttg attttgttga tttgtgaaat gccattgccc accgacacat agccattgtc
     2221 aaaatcccct tctaacatac ccaaacgcat tcctgtacca gcgttcatta ccttagcaat
     2281 ctcactacga gttgccccat tttcgctcat ttcaaagcat tttttcgcta atccagtcgg
     2341 cagtgaacgg tagtaatgtg gttcggtacg gaataacagc agatcattgg catttgcctc
     2401 cacaatccag tttttcactt tttcgcttgc acggcattct tcggtggcga taaatgccgt
     2461 gccaatccac acgccttcag ccccaagcgt taaggcagcc tgcaccgctt ttttatcggc
     2521 aataccacca gccagcatta tcggcaaatc caccttgccc acaaattccg ccagcacatt
     2581 aaaactgcct acctctttca tcggcaaagt accgccctca tcaaaacccg tcagcaccaa
     2641 aatatctgct cccaatgctt gggcttttaa agcgtccgcc aaattgggat taggcaaacg
     2701 gcagatgatt ttaatgccag cagctttgaa tttggcgtaa atctctgggt caagccagcc
     2761 gttatccagc accacaggca cacgctcttc aatgaataaa tccaccatta acggaatcag
     2821 cgaaaaatca taagacaaaa taaatggtac gccaaaaggc ttatcggtca atgccttaac
     2881 cttacgaatc tcgttacgca tacggtcaag tacttcttcg ttggaagttg gattggtggt
     2941 ttgccctgcg tgtggggcta aaaaaccaag cccaccagcc tcggcaacgc ttgctaccag
     3001 atgagcgtcc gtcagccaag acattggcgc ttggacgata gggtgcttga tatttaagat
     3061 ttgggtaatg cggttcattg gattttcctg tttgaataaa aagaattgga cgtagtttaa
     3121 tggttttgga tttgagaggg aatgcgtgaa aatgggaagg tggttttcgg atttggaaaa
     3181 ttatcaatgc taaaatactt gaaatacaca
//
LOCUS       DANLXB010000235         3191 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLXB010000235 DANLXB010000000
VERSION     DANLXB010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            1..170
                     /locus_tag="PXD41_002408"
                     /pseudo
     CDS             1..170
                     /locus_tag="PXD41_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            422..1612
                     /locus_tag="PXD41_002409"
     CDS             422..1612
                     /locus_tag="PXD41_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL6289891.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            1687..>3191
                     /gene="nhaC"
                     /locus_tag="PXD41_002410"
     CDS             1687..>3191
                     /gene="nhaC"
                     /locus_tag="PXD41_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6289892.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGC"
BASE COUNT          908 a          589 c          723 g          971 t
ORIGIN      
        1 gaattgagaa tttttggagc caagcaaaac gccatttgcg taaatttaac ggcataccta
       61 aagctcattt tgagctgtat ttgaaggaat gcgaatagcg ttttaatcac agtgacttaa
      121 aatctcaaat ttccatttta aaacaattgg ttaggggttg tttaagttag ttatctagga
      181 cagccctaaa ttttgtagtt ggaatttcaa cggagaaagt tatctataaa cttacaaaag
      241 ttatagaaaa tggaggcatt tttgcttaaa gtatgctatc tattcatatt aattgcatag
      301 ttaatcaaca actgaagaaa aattagaagt agatcataaa atcaacaaaa agtccgtgct
      361 ttttagctaa agattgttaa actcttttgt gttacaagtt tttaacataa aggagttttt
      421 tatgtctact tctcaacaac tcatccaaca aaccgaacat ttcggtgcca ataactacct
      481 acctctacct attgttatta gtaaagctaa aggcatttgg gttgaagatc ctgagggtaa
      541 tcgctatttg gatatgctta gtgcctactc agcggttaat caagggcatt gtcatccaaa
      601 aattgtacag gcactaaaag atcaagcaga caaagtaacg ctgacctctc gagcatttta
      661 taacgatcaa cttggtattt ggtatgaaaa aatctgcaaa ctcgctaata aagagatggc
      721 attaccgatg aatacgggtg cagaagcggt agaaacagcg attaaaactg ctcgccgttg
      781 gggttatgat gtgaaaggaa ttgcagaaaa tcaagcagaa atcatcgctt gtgttggcaa
      841 ttttcacgga cgaacaatgg ctgcagtatc tctctcgtct gatccggatt ataaacgtgg
      901 tttcgggccg atgttaggtg gcatcaaact tgttccatac ggtgatttag aagcattaaa
      961 agctgcgatt acaccaaaca cagcagcgtt tttggttgag ccaatccaag gtgaatctgg
     1021 cattcttatt ccacctgaag gtttcttgga acaggcttat gaactatgca aagagaataa
     1081 tgtgctgttt attgctgatg aaattcaggc aggtcttggg cgtactggca agttatttgc
     1141 aacagaatgg gaaggctttg agccagatat ttatattcta ggtaaagcac ttggtggcgg
     1201 ggtgttccca atctcttgtg tgttagcaaa tcgtgatatt ttaggcgtat tcaatcctgg
     1261 ctcgcacggt tcgacatttg gtggtaatcc attagcctgt gcggtatcta ttgcctcaat
     1321 tgatgtactg ttggaagaaa aacttgcaga gcgttcccgt gagttaggtg aatacttctt
     1381 ggcagagctg aaaaaaatcc aaaatccaat tattaaagaa gttcgtggac gtggactgtt
     1441 tattggcttg gagttacatc aaccagcacg cccattctgc gaaaaactca aagaaaaagg
     1501 cttactctgc aaagagaccc acgatacagt tatccgcttt gctccccctt tggtgattga
     1561 aaaattcaat ttggattggg cattggagaa aattcgggag gtgttggctt aattgtcatt
     1621 ttctctatat tttatcctgc caaatcgcct ttaacccttt ttggcaggaa gcaaaacagt
     1681 tgtaaaatgc tgattttgca aactttttcc aaaaatcaac cgcttgtaaa aggtggcttt
     1741 atgtcaaaca gaacagaaat aacagaccaa aatatccgaa tcccgtttcg ctatgctata
     1801 ttgcctgtga ttattatggt atcgattatg gcggtggcta tcatcaaatt tgaagcctca
     1861 cctcacgttc cgttgcttat tggggcaatt agtgccgctg tgattgcaat ggcacatggc
     1921 taccgttggg agacaattga aaaaggaatt tatagaggca ttcgtatggc tttaccagcg
     1981 attgttatca ttattatgat tgggctaacc atcggagctt ggctaggtgg tggaattgta
     2041 gctacgatga tttactacgg cttgaaattg atctctccgt cgctgttttt agtaactatc
     2101 tcaataattt gtgctattgt gacccttgcg attggtagct cgtggtctac aatgggaaca
     2161 atcggtgtag cggcgatggg gatcgggttt agtctcggca ttccggcacc gatggttgcc
     2221 ggtgcggtga tctcaggagc atatttcggc gataaaatgt cgccactgtc agacactacc
     2281 aatctggcag cagggattac cgaaaccaat ctgtttgaac atatccgcca tatgtttatc
     2341 actaccgtgc cggcgttcct gattgcgtta tctgtctatt tctattttgg tatggaattt
     2401 agagccgaaa atctcgatct tgctaaaatt gaagacatta tgcaggcaat gcaggaacat
     2461 ttcttgattt cgccttggtt gctattagtg cctttattag tcgtggtgtt ggtggcaaaa
     2521 aaagtgcctg ccttaccggc attagctgca gggataattc ttggttggct ctgccacgtt
     2581 tttgtgcaag gcggtgatgt cagcgtagca gtgattactc tgcacgacgg ctataaaatt
     2641 gagagcggcc acgagatgat tgataagctg ttcaaccgtg gtgggatcga gtcgatgatg
     2701 tacaccattt cccttacgat tgttgcgatg acttttggtg gcattgcaga gcaagctgga
     2761 atgttacatt cagtagtgga aaaaatcctt acccttgcaa aatcagcagg tagcttaatt
     2821 agtgctacga ttgtatcggc atttattacc aacgtaacga catctgagca atatatttct
     2881 attttattac caggcagaat gtatataaaa gcctataggg ataagggact aagttcgaga
     2941 aacctttctc gtgcattgga agacggagga acagttactt cggttcttgt accttggaat
     3001 acctgtggtg tttatgcgtt ctcaatgttg caagtgagtg cttttgaata tgcaccgtat
     3061 gcaataatga attggctcat tccactgatt gcgattggct tggcaacctt gaatatcaaa
     3121 attgagcgat tgccaccgga agaattagcc aaagaacctg aggaaattac tctgccaaaa
     3181 cgtggttgtt g
//
LOCUS       DANLXB010000236         3158 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLXB010000236 DANLXB010000000
VERSION     DANLXB010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(22..1206)
                     /locus_tag="PXD41_002411"
     CDS             complement(22..1206)
                     /locus_tag="PXD41_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL6289893.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
     gene            complement(1219..2073)
                     /gene="argB"
                     /locus_tag="PXD41_002412"
     CDS             complement(1219..2073)
                     /gene="argB"
                     /locus_tag="PXD41_002412"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL6289894.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            complement(2165..3106)
                     /gene="argC"
                     /locus_tag="PXD41_002413"
     CDS             complement(2165..3106)
                     /gene="argC"
                     /locus_tag="PXD41_002413"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL6289895.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
BASE COUNT          821 a          793 c          633 g          911 t
ORIGIN      
        1 attcctactg tttataataa ctcaagaatc tttcaagaca tcctctaaca ctctgattcc
       61 ttgttctatc tgttgttcag agatcatcag cggtgggagt agccttaact tgcttttagc
      121 ggttaaaaac agcacacctt tgttgataca ttttgcaaca atatcagcgg ctaaaatgcc
      181 ttcctcaaat tctacgccga gcattaaacc taagcctgaa acggatttaa cttttggtaa
      241 gctcgctaag cgttgctgta acaactgccc tttttgttgc acttgggcga gaaattcggc
      301 gtttatttta tcgattacta catttgcagc agcacaggaa acaggattgc caccaaaggt
      361 tgagccgtgg tcgcttttgc ctaatgtcat ttccactttt tcgcctaaca ggaaagcacc
      421 aatcggcaag ccgccgccca agcctttagc gagcgtgact aaaccaggag ttaaatcaaa
      481 ttgttgataa gcaaaaagtg tgcccgttcg cccaatgccg gtttgcacct catcaatcat
      541 aaataaaata tctttttctt ggcacaggct ttgcacggcg tgcagataat ccgcctctaa
      601 tgggcaaaca ccgccctcgc cctgcaccac ctccagcaaa atcccgcaaa cgttctcagt
      661 ttccaagcga gctttcagtg cctcaatgcc atttacaggt aaatattcaa agccctctgt
      721 aaaggggaaa aaatgcttgt ggaatacctc ttgcccagtg gatgcgaggg ttgaaatggt
      781 tcgtccgtga aaagagttca cgagggttaa aaccgttgaa cgaccggaac cgtatttgtc
      841 gaaactatat ttgcgggcgg ttttaattgc tccttcattt gcctctgccc ctgaattgca
      901 aaaaaatgcc cgttttagac cgcttgcagc cactaatttt tgggctaatt ggcttgccgg
      961 ttcggtaaaa aacaggtttg aggtgtgagc taatttgccg gcttgtgtgg taacagcttg
     1021 tagccaatcc tcatccgccc agcctaaact atttacccca atgccactgg taaaatcaag
     1081 atacttattg ccctcaaaat cccacacttc acagcctttt ccgtgcgaca gtgcaaggtc
     1141 aaatctgcca taggtttggg cgatataatc cttatctaat tgcttaatcg tattactgct
     1201 tgtcatttca ctttcctgtt attttttata aaaccgtgtg ccgtttttgc caccgaacat
     1261 ttctaccaaa atggcgtggt cgattcgccc gtcaataata tttgcctcag agccaccagc
     1321 tctgatgaaa tcggtacagc acgcaatttt ggggatcatc ccaccggcaa taatgccttg
     1381 ctcaatcagg gactgcactt cgcttacttc cacttccgga attaaggtgc tttcatcaaa
     1441 gcgatctcgc aataaacctg caatatcggt catcgagacc aatttttccg cttgtaacgc
     1501 aatcgcaatc tcgctggcag cggtgtctgc attaatgtta taagcctgcc cgttttcatc
     1561 aacgcccacc gtggaaacaa ccggaatcaa gcccgcatta agagcaattt caatcacagt
     1621 tggatcgact ttcacaatat cgcccacaaa gccgtaatcc acctctgcct ctaatttttt
     1681 gcattgcaac atcgccccat caataccaca cagcccaatg cctttccctt ttaataaggc
     1741 gacaaggctt ttattaactt tgcctgccaa catttgcaaa accacgttaa tcgtatcgct
     1801 atcggtaaca cgcaacccgt tgataaattg cggttcttta cccaataatt tcacgccttg
     1861 tgaaatctcc agcccgccac cgtgtaccag taccactttt acgcctaaac gatgaagtaa
     1921 cagcagatct gccatcactg attttttcag ttcctcatta atcattgcgt taccgccata
     1981 tttcaccaca atgattttac cctgccattt caccaaacaa gcggtggatt tttctaataa
     2041 atttgcaaat tgattgattt cttgttgttg catatttctt tctcttgtag ggacgggtcc
     2101 tgtgcccgtc cgaatatggg cgatgattat cggacaggca caggacctgt ccctacattt
     2161 atatttaaag ctctaacccc tcaacctcat ctcttcccaa cataatattc atacactgca
     2221 ctgcggcacc tgatgcccct ttgcctaaat tgtcaaaacg ggcagcaagt aaaagttggg
     2281 tgctgttgcc gtaaataaaa atctctaagc tgtctttacc tgcataagca ttcgcggcaa
     2341 gcattccgtc ttcgggtaga gattggaaag ggtgaacgtg aattagtcgg ctggtttggt
     2401 agtaatcggc gagcaaattt gcaatttctt cgccggattt gaccgcttgt aaggcgaaga
     2461 tctgcaatgg cacagtgact aacattccgc tgtaataatc agcaaccaca ggggtgaaaa
     2521 tcggtgggtt ttgcatttgg gtaactgcct gcatttcagg caaatgtttg tgttggagag
     2581 ttaaaccgta aacacgaggg gcattgaaag catttgggct gttttcattt tcatagtcag
     2641 caatcatcgc tttgccaccg cctgaatagc cggttaagga atgacaactt aaagggtaat
     2701 cggcgggcag aatccctttt tccaccagtg gacgaaccaa cgcaatatag cccgtggcat
     2761 ggcaacccgg caccgcaaca cgcttggcat tttggatttt ttcacgttgt ccgctcaatt
     2821 ccggaaaacc ataaacccaa ttaggattga cccgatgagc ggttgaagta tcgcaaattc
     2881 gggtattttc cggtgcattt gctactaatt cttttgaggc ttcatccggc aaacagagga
     2941 aagttaaatc cgcctctgcg acttttgcca cacgggcgtt caaatctttc cgctgctctt
     3001 cgggcaaggt taataattca atatcgtccg cttggcttaa acgttcgtga atgcgtagcc
     3061 cggttgttcc tactgcccca tcaacaaaaa tcttgtattt gctcattgaa aatccttctt
     3121 tgactttttc tgctcggtag tctaaggcta tttaaggc
//
LOCUS       DANLXB010000237         3119 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLXB010000237 DANLXB010000000
VERSION     DANLXB010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3119
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            195..377
                     /locus_tag="PXD41_002414"
     CDS             195..377
                     /locus_tag="PXD41_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289896.1"
                     /translation="MESHKTGNIITEQASKQASKQASKQASKQASKQASKQSVAQFKQ
                     APLPFTGQKRMFLKHF"
     gene            complement(560..2155)
                     /locus_tag="PXD41_002415"
     CDS             complement(560..2155)
                     /locus_tag="PXD41_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6289897.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLGYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            2304..2744
                     /gene="mioC"
                     /locus_tag="PXD41_002416"
     CDS             2304..2744
                     /gene="mioC"
                     /locus_tag="PXD41_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL6289898.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            2756..2923
                     /locus_tag="PXD41_002417"
     CDS             2756..2923
                     /locus_tag="PXD41_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL6289899.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
BASE COUNT          942 a          638 c          648 g          891 t
ORIGIN      
        1 tgcgccagcc aatatcaata gttgctgtca tcagcatgac cgagactacg gtatcaaggg
       61 cacagtcagc cgagccgaag ccgacaagcg gttaagacat tgcttaattt cgcaagggaa
      121 tccgattaag gcgtgggtgt tttgggttgt ggtgaggttg tttgggtgga tttattacaa
      181 ggagaaaaat atcaatggaa agtcataaaa caggaaatat cattactgag caagcaagca
      241 agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca
      301 agcaaagtgt agctcaattt aaacaagctc cgctaccttt tacaggtcaa aagcggatgt
      361 ttttaaaaca cttttaatga tgatttaaag ggcgtttgtt ttcagtttat tttgcataac
      421 ttttgtgatt acggctatgc aaaatgattt gcaaaactat gcaaaataaa tcgaccgctt
      481 acaattctaa aagaaaagca gtctattctc taccacattt tgcaaaaaag tggcaaaaat
      541 agaccgcttg tatggcatat cactccgata aactcacccc ataaaatggc gtgtagccaa
      601 acggattttg cacaaaacct tgcacccgtt tgctgagtgg tacataattg atagcgtgag
      661 ccagcggaat aaatggcgtt tgttcgttgg caatttccac cgcttgttga tagagcttcg
      721 cccgctcgtc acggttttgg gtttgtacag cttgagctaa taactgctca aatttctcat
      781 ccgtccaacg cccataattt gttcccggaa tattagattt gcttaataaa gggaagagga
      841 aattatcagg atcaccatta cggcttgtcc aaccataagt gccggtagag aactcgcctt
      901 cacgggtgcg tttgttaaaa tccgcccatt cgtgggtcac taatttcgct ttcaccccga
      961 ttttcgccca atccgcctga ataatttcag ccgttcgacg tgggtttggg ttagaagggc
     1021 gcactaccgg ttgtacccaa atttccgttt caaatccatc ggcaaagccg gcttctgtta
     1081 atagggcttt ggctttttca aggttaaatt catattgcgg taaatttgga ttatagccca
     1141 acaccgaatc agggaacgga ttacttgcca ccgtgccacc gccttgataa acagcctcga
     1201 caatcgcttt cttatcggtt gcataatgca aggcttggcg aactttggcg ttatttaatg
     1261 ccggtttggt gctgtttaag ccgatataag ctaaattcag cccgtctctc tgtaacaaat
     1321 tcaccttcgg atcttgtttc atttgggcaa tatcggaaat attcgggaaa tcaatcacat
     1381 cgcattcacc cgctttcagt ttggcataac gagtgcccgc atcaggggta atactaaaaa
     1441 tcagtttctc aaattttgct ttaccttgga aataatccgg gttcgcaaca taacgcaccg
     1501 cttgatcggt ttgataggct tggaacacaa aaggccctgt gccgatcggg gcttgatcca
     1561 ataactccgg cttgccttcc gccagcaatt tatccgcata ttcttttgaa taaatcgaca
     1621 agaaatccat cgctaaggtt gtcagaaaag gagcattagg ttgctgtaag gtgattttaa
     1681 cagtgtaatc gtccactttt tccactgttt ttaaaatctt cggcaaattc atccaatggt
     1741 aatagaaata agtaccgtca gagaccttat ggtaagggtg gtttaaatcc atctggcgtt
     1801 ggaacgagaa cactacatca tccgcattca gcgttcgagt tggcgtaaat tgtttattgg
     1861 aatgaaattt cacgtcttta cgtaaatgga atgtgtaacc taagccatcg tcactgattt
     1921 cccaacgttc cgccaaactc ggctcaaccg ttagttcacc ggctttaaac gctaataagc
     1981 gattataaat ttgttgtgaa ctggcgttga aatcattggc atcattagta attgcaggac
     2041 taagtttcat cggtggagtt gccacgcaat taatcaacgt atttaccgga gctgctgcca
     2101 ccaaactgct ggcacttaag agtaaaacag aaagagataa ttgagaaaga cgcataaaga
     2161 ctccttaaca ttttctacta acttactcgg cattaacgta ttttcaaaat aactaaaggt
     2221 tataatttat aatcagaata atcagttgca aaccaatgat tcttggctag aatattggca
     2281 gttttttaaa cgagagattt actatgacat caatttgtat catcaccggc agcaccttag
     2341 gcggtgcgga atatgttgcc gatcacatta atgaggtatt aagcgaacaa ggttttgaag
     2401 tggaactgtt taaccaagcc acccttgccg atattgaggg caaaaccaat ctgattatcg
     2461 ttacctctac ccacggagcc ggcgagttac ccgaaaatat ccaacagcta tttgacgatt
     2521 tagcaaatag ctcggctgat ttcagcagta tgaaatttgg tgtaatcggt ttaggtagct
     2581 ccgactatga caccttctgc aatgcagtaa atattgttga agaagctctc aaagcgaaag
     2641 gggcaagcca agtttgcgaa tcactgagaa ttgatgtaat gaataatttc gaccacgatg
     2701 gcagtgctga agaatggtta ccatcatttg ttgaacaatt ataacttaag tatcaatgaa
     2761 caaaatcagt gcaaataagg caaagtggat taaaatcgct attatcttaa tctatatgtt
     2821 cagccctgta gatattctac ccgaagcgat tttaggccca ttcggtttgg ttgatgatgc
     2881 cgccgcatta atgctattga ttaagactat tttggaaaaa taggcatagt agacaaaata
     2941 gttgcaaaaa accaaaacaa aacgaccgct tgtaacccaa tacaagtggt cttatctttt
     3001 acttaattct tttaagggag aatatctctt gaaataggat tttgaagtga aataagcgtt
     3061 tctgttgact gaatttcatc aatagactga atttttcctg ctaataccga atgcaactc
//
LOCUS       DANLXB010000238         3076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLXB010000238 DANLXB010000000
VERSION     DANLXB010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            31..1179
                     /locus_tag="PXD41_002418"
     CDS             31..1179
                     /locus_tag="PXD41_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL6289900.1"
                     /translation="MTLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDN
                     ITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEG
                     QGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGALSRKANQPQALVR
                     IANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRS
                     MAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGK
                     MGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPTVYQVNLLKPQSM
                     FLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY"
     gene            1251..2354
                     /locus_tag="PXD41_002419"
     CDS             1251..2354
                     /locus_tag="PXD41_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6289901.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            2354..>3076
                     /locus_tag="PXD41_002420"
     CDS             2354..>3076
                     /locus_tag="PXD41_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6289902.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLI"
BASE COUNT          987 a          533 c          585 g          971 t
ORIGIN      
        1 caaaaaaaat taaatactac attattattt ataacattat cattaatttc agcctgctct
       61 agcctaccaa cgtccggccc aagctatagc gaaatcttag caagtaatga aaatacagct
      121 gaaacgcagt tgcctgaagt caatttaatc aagttagata acatcaccgt acaaaactta
      181 taccaagagc aacaatctca acgtttttca ggatttgatg gctcaatggg tgtgggtggt
      241 tatgctggaa cagttaatgt aggcgatata ttagaaatat ccatttggga agcgccacct
      301 gccgtgctat ttggtggaac atttagtgct gaagggcaag gtaatgggca tttaacccaa
      361 ttacctcagc aaatggtgaa caaaaatgga acggtaactg tgccttttat cggtaatatt
      421 aaagttgctg gaaaaacacc tgaagtaatt cagaatcaaa ttgtcggagc attgagccgt
      481 aaagctaatc aacctcaagc attagttcgt attgcgaata acttgtcgtc tgatgttacg
      541 gttatccgcc aaggaaatag cattcgtatg ccattaagtg ccaataatga gcgtatttta
      601 gatgcagttg cggcagtagg tggtacaagc gaaaatattg aagatgtaac agttcgttta
      661 acacgtggaa ataaagtgcg ttcaatggcg tttgaaacat taattgctga cccctcacaa
      721 aatattacat tacgttcagg tgatgttatt gctttaatga atactcctta tagctttacc
      781 ggattaggag cagtaggtaa taatcaacaa atgcgttttt caagtaaagg cattaccctt
      841 gctgaagcta tcggtaaaat gggaggatta attgatgagc gttcagaccc tcgtggtgtg
      901 ttcgtattcc gccatattcc ttttacacaa ttagattacg ataaccaagc tcaatggcgt
      961 gaaaaaggtt atgcagaggg aatggacgtt ccaactgttt atcaggtgaa tttattaaaa
     1021 ccgcaatcaa tgtttttatt gcagcgtttc cctattcaag ataaagatat tgtatatgtg
     1081 tcgaatgctc cactgtctga atttcaaaaa ttcttgagaa tgattttctc cattactaca
     1141 ccaattacag gtacagctaa tacaattaga gcgtactaat tagctcatag ataaaatggt
     1201 aaaaaatcat taaaaaatga ccgcttgtaa cacttttcgt tgaggatttt atgtcaaaga
     1261 agaaaaaaca ttttttagcc aaccctttgt tgtggctaac tgtaattatt ccaactgctt
     1321 gttctggaat ttattattcc ttatttgcct ctgatattta tgtttcagaa tctagctttg
     1381 tggttcgttc gcccaataat caatcgagct taacaggcgt tggtgcttta ttgcaaaact
     1441 ccggtttcgc ccgttctcaa gatgatacct attcagttca ggaatatatg cgttcccgta
     1501 ccgcattaga acaacttgaa gcagaaattc cggtaaagcg tttttatagt gagcaaggtg
     1561 atttactaag caaatttaac ggtttaggat ttaacgatac ccaagaagca ttttatcgtt
     1621 attttaaaga acgtctgaat attgatgtcg attctatttc aggtattgca acgctacgcg
     1681 ttcgtgcttt taatgcagaa gaaggacaaa aaattaacga gaatttatta cagcaagggg
     1741 aaacattaat taaccgcctt aatgaaagag caagacaaga tacggttgag tttgcagaag
     1801 agcgtgtaaa agaggccgaa aaagacgtca ataatactgc gttagcatta agccaatatc
     1861 gaactaaaaa taaaatttat gatttaccgg cacaatccag cgttcagctc tcattaattt
     1921 ctaccttaaa aagtgaatta attcgggtag aaacacaatt agcacaattg aagtcaatta
     1981 cgccggataa tcctcaggta gccgcattac aaatgcgtca aaaaagtttg aaaaaagaaa
     2041 ttgatgatca gtccaaacaa cttgcaggag gtaatacttc tgtagcaacg caaactgctg
     2101 aatatcaacg tttggttctt gctaacgaat tagctcagca acaacttgca gcagcaatga
     2161 cttcattaca aaatacacga ggtgaagctg atcgccaaca actttattta gaggtaattg
     2221 gtaggccaag caaaccagat tgggcattag aaccctacag aatttataat attatatcaa
     2281 ctttttttat cggcttaatt ctatttggag tattaagttt gttactagca agtattagag
     2341 agcataaaaa ctaatgcgat atggtgataa tacaaccttt aaacgttcct gtgtgattca
     2401 aaaacgggtg attcacgccc ttttaatgag ggaattaatt actcgttatg ggcgtaaaaa
     2461 tattggcttc ttatggcttt ttatcgaacc attattgtta acgttagtga ttactgttgc
     2521 ttggaaatat ataaaagcag ataagttttc aactttaaat attatcgctt ttatgattac
     2581 aggctaccct atcgcaatga tgtggagaaa tgcctctaat agagctcaag gagcaatatc
     2641 agcaaactta agtttgcttt accacagaaa tgtgagagtg ctagatacga tatttactcg
     2701 agttttatta gaagttactg gcgcatctat cgcccaaatt ctcttaatga ctatatttat
     2761 cgctattggt tggatagaaa tgcctaacga tattttctat atgctctgtg cttggatatt
     2821 aatggcattt tttgccttag gtttaggttt aattatctgt actttagcac attatattga
     2881 accttttggt aagatttggg gaacattcag cttctttcta cttcctcttt ctggtgcatt
     2941 cttctttgtc cataatttac cgctaactgc tcaaaatatt gccttatggt ttccaatgat
     3001 tcatggtaca gaaatgttta gacatggtta ttttggtgaa acggtaatta cctatgagag
     3061 cattagttat cttata
//
LOCUS       DANLXB010000239         3053 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.241, whole genome shotgun sequence.
ACCESSION   DANLXB010000239 DANLXB010000000
VERSION     DANLXB010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            12..239
                     /locus_tag="PXD41_002421"
     CDS             12..239
                     /locus_tag="PXD41_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL6289903.1"
                     /translation="MKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRLGR
                     NPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            276..563
                     /locus_tag="PXD41_002422"
     CDS             276..563
                     /locus_tag="PXD41_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL6289904.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            567..1763
                     /gene="lapB"
                     /locus_tag="PXD41_002423"
     CDS             567..1763
                     /gene="lapB"
                     /locus_tag="PXD41_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL6289905.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            1787..2479
                     /gene="pyrF"
                     /locus_tag="PXD41_002424"
     CDS             1787..2479
                     /gene="pyrF"
                     /locus_tag="PXD41_002424"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL6289906.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            2562..2873
                     /gene="yciH"
                     /locus_tag="PXD41_002425"
     CDS             2562..2873
                     /gene="yciH"
                     /locus_tag="PXD41_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL6289907.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
BASE COUNT          988 a          471 c          639 g          955 t
ORIGIN      
        1 caagtttacc aattaaaatg gtggagcatt gtgtaaaaga gcttttagag cagttaacgg
       61 ctactttaga agaaggtgaa aggatagaag taagaggatt tggtagtttt tctctacatt
      121 atcggcagcc gcgtttaggt cgcaatccca aaacaggaga aagtgttctt ttaggcgcga
      181 aatatgtacc acattttaaa gctggtaaag atctaaaaga gagagttgat ctgctttaag
      241 tcttattaat tcaataatcg tagtaaggag attatatgat taagtatatt ttaggtattt
      301 taattgtgat tgcagttatt attgtcgctg ttacgattgg agccaataat gatcaactta
      361 tcacctttaa ctatattttt gctcagagtg aattacgctt atcaacgtta gttgcgattt
      421 tatttggctt aggattgatt cttggttggt tggtaacggg tattttttac ttaaaaatta
      481 agtttcaaaa cgttgcttta aatcgtcgtg taaagcgcca agctcagcaa ataactgaat
      541 taacgactcc aaaggctgaa taatcaatgc ttgaattatt gttcctttta ttgcctattg
      601 cagcactata tggctggtat atgggacaac gtagtgcaaa gaaggatcaa gaaaccgcta
      661 gtaataagtt ctctcgtgag tatgttacgg ggttaaattt tcttttatct aatcagcagg
      721 aaaaggcggt ggaccttttc ctctctatgt tacaaaaaca agaatccgaa aatcatattg
      781 catctgaatc ccaatttgaa gcggagttaa ccctaggtaa tcttttccgt tcaagaggtg
      841 aggtagatcg tgccttacgt attcaccaaa cattagtgaa tagccctcat tattcatttg
      901 atcaaaaatt attagcaaaa cagcaattag ctaaagactt tatggttgca ggtttctatg
      961 accgtgcaga aaattattac atttcattag ttgatgaacc tgagtttgct aaatattctt
     1021 tatctcagct tgctgttatt taccaaaaaa ccagagaatg gaaaaaagcg attaatgtta
     1081 cagaaaaacg gcttcgaata gagccggatg cagataaaat accgctttca catttttatt
     1141 gtgaatatgc gcaaggggtt aaatttgatg ataaagcggc atttattgaa tcgttaaata
     1201 aagcgttaga atattatcct caatccacac gcgcttctat aatattaggt gatttctatt
     1261 tagaagaggg agaatatcta agagcattaa gctatttcga acagattctt gtgcaagacc
     1321 ctgattatat tagcgaagtg cttggacgaa ttaagcaaag ctatatggct cttgaggact
     1381 taaatggcta tgagttattt ctcattcgag caaaccgagt aaaacataat agtagtgtag
     1441 atattgcttt aactgaattt attgaagaaa aagatggtat caatgctgca cattctaaac
     1501 tataccagca gttgagtact tatccgaatt taattacttt tcaccgcttt attcgctatc
     1561 aagcagattt tgcggaggaa ggaaatggta aggaaagctt agttttatta cataatatgg
     1621 tgggaaatca gataaaacgc agcttccaat atcgctgttt aaattgtggt tatcaaagtt
     1681 atcgcttaat gtggcaatgt ccttcttgta atcaatggga aaaaattaag ccggtacaaa
     1741 gtatcgaagg tattattcaa taaagaaaga atctgaggaa ttgaaaatga acaataaagt
     1801 aattgttgcg ttagactatg aaactgaacg tgaagcatta gaatttgtgg atttggtcga
     1861 tccgtcgctt tgtcgtttaa aagtaggcaa agaaatgttt acaaccttag gcacaaattt
     1921 tgtcaaacaa ttacacgaac gtaaatttga tgtattcctt gatttaaaat atcatgatat
     1981 tccaaatacg gttgctcgag cagtacgttc tgctgctgat cttggtgtgt ggatggttga
     2041 cttgcatgct tctggtggtt tagccatgat ggaagaggca aagaaaattt tggagcctta
     2101 tggcaaagag gcaccattat taattgcagt gacggttcta accagtatgg aagatttgga
     2161 tttgcttcaa ataggtatta atgcttcgcc gatggaacaa gttattcgtt tagcacattt
     2221 agcacaacgg gctggtttag atggcgtggt atgttctcca caagaagttg aggtattacg
     2281 tacccattgt ggtcaagatt ttaaattagt gaccccagga atccggccaa aaggaacaga
     2341 ttttggggat caacgccgag tgatgacacc caaacaagca gtagaaacag gctcagattt
     2401 tttggttatt ggtcgtccta ttacccaagc tcaagatccg cttgcggtat taaaatctat
     2461 taaccaatct atcagttaat tcattgcatt tttaatgaag gcggaaaaat ttccgccttt
     2521 tttaatcaaa caagcggtta tttttgagga aaaatttgta aatgacatta gtctattcaa
     2581 cggaaacagg cagaataaag tccgaagtaa taaaagaaga acgccctaaa ggggatggta
     2641 ttgtgcgtat tcaacgtcaa acaagcggta gaaaggggaa aggtgtttgc cttatcaccg
     2701 gtcttgattt agaggataaa gccttaaatt ctcttgcttc agagcttaaa cgtaaattgg
     2761 gttgtggtgg ctcatttaaa gatggagtaa ttgaaatcca gggcgataat cgaggattca
     2821 ttaagcaaat cttagaacag aaaggtttca aagtgaaact ggcaggtggt tgagttttaa
     2881 acaattatca gctggcagtt tttaaataac ttcattttat ttgaaacttc attcctactt
     2941 ttctgcctaa aactcacgat taaggagaaa aactaatgtg gaagaaaacg ttgattgctg
     3001 tatttttagc aagccaatat gcttttgcgg taggaaccgg gaaagaacca tca
//
LOCUS       DANLXB010000240         2928 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLXB010000240 DANLXB010000000
VERSION     DANLXB010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..852
                     /locus_tag="PXD41_002426"
     CDS             <1..852
                     /locus_tag="PXD41_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6289908.1"
                     /translation="EANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPAEFEAGLRL
                     VILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKELVIFLYPK
                     WLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLEKEGNLLAL
                     LASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTLQNEFQHYH
                     KTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFGITPSQIKR
                     DKAKGII"
     gene            complement(856..1296)
                     /locus_tag="PXD41_002427"
     CDS             complement(856..1296)
                     /locus_tag="PXD41_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL6289909.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(1359..1922)
                     /locus_tag="PXD41_002428"
     CDS             complement(1359..1922)
                     /locus_tag="PXD41_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL6289910.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            complement(1925..2638)
                     /locus_tag="PXD41_002429"
     CDS             complement(1925..2638)
                     /locus_tag="PXD41_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL6289911.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            complement(2651..>2928)
                     /locus_tag="PXD41_002430"
     CDS             complement(2651..>2928)
                     /locus_tag="PXD41_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL6289912.1"
                     /translation="VDWRQYKILRIAPHAVDTFLLITGIAAVAIFLAYDFFTLAQFSW
                     LLPKLLFLVLYIVFATKAFKKGQPFSLKFYLLAVVSFLLMMLTATFH"
BASE COUNT          929 a          586 c          607 g          806 t
ORIGIN      
        1 gaagctaacc aaataaaagg tttttcacat ttataccgac tacgttcaga tcttatgctg
       61 aaatatacag agatttcagt tactgaaacc gtagagcaag aacctgcgga atttgaagcc
      121 ggactaagat tggttatatt gttgagtggt cgatcggaaa ttgattttaa ttcggaagta
      181 tttgaattag atgcaagttt aaaacctcaa gccgcatttt taccgctaaa tagagctgaa
      241 atggggcgta aaatttttag gaaagggcaa cttcaaaaag agcttgttat ctttctctac
      301 cctaaatggc taatagaaag ccagttaaat ttggcaagct atcatcactt taaacagcat
      361 ttaaaagccc accaaattat tttgactcag agtatgttaa aacttattca cgatattgtg
      421 tcagagcagg aaatgcaacc atttgggtta cttgagaaag aaggtaatct attagcttta
      481 ttagcaagtg ctttttctca gctgacacag gctccccggt taaaaaaaga tcgggtgcaa
      541 cagttaacag aattgcttga gagcggtaaa tttgacggct ggagtttgaa gcagattgca
      601 atatatttcc ataccaatgt gaccacatta caaaatgaat ttcagcatta ccacaaaacc
      661 tctatttttg cgtatttaag gcgttctaaa ttagaacaag cctataaatt actattacaa
      721 gggcagagta ttacacaagc agctgaattt gccggatatg ccaattcgga gaatttttca
      781 acggcattta agcgaacttt tgggataaca ccaagccaaa tcaaacggga taaggctaaa
      841 ggcattattt gagcttcaaa ttatatttct ctcccaaatc gtctttttcg caaacataag
      901 tttattaccg gtgtgcttga tggtattgaa tgataacacc caaacatcgc taggcttaag
      961 ccgtgcaagc gggtgttttt ggtaataaat ttgcaaagcg gctttttcgg cttgtttatc
     1021 ttctaaacat tcggcggtag cggagaattg gacaccttca atttcgttga tcttctcaat
     1081 ttgcccacaa attgtgccga caatatgtgg gttttcaagc atcaagccag cgtgtctggt
     1141 tttcttggcg gttaagataa tcaagcgaac attttcttgg tcaaaggcat aaaagcaatt
     1201 tgctgcccaa aaatcctgtt cggtatgagc tgcaatattg acaacgtggt tagtttgaat
     1261 gaaatctaaa atatgggtcg ggattggatt gtgcataaaa atacctgata gtttttatca
     1321 ggtattctag catttcaaaa agcaaaagat aagccgaatt attctcccca atgtggggta
     1381 tttggaatgt caatatccaa cagggaaagg gcatggctta cgctgtgggt gaccatctcg
     1441 tcaaggctgg ttggcttttg gtaaaacgcc ggaatgggtg ggaaaataat gccgcccatt
     1501 tctgtgactt ttcgcatatt gtcaatatga gcaaggttga gcggagcttc tctcaccatt
     1561 aataccaatt tacgccgttc tttcaacacc acatctgccg cacgggtcag caaattatcg
     1621 ctcaaaccgt tggcaatagc ggcaagggtt cgcatagaac acggggcgat gaccatacct
     1681 tcggttttaa atgaaccact ggcaatgctt gctccgacat tgtttagcga atgtatttga
     1741 tcagctaaat catgaagagc ttctcgggta taatccgttt cgagagtacg agtgagttca
     1801 gctcctttgc tgattacaag gtgggtttca atttctgaaa acggtttcag cagttcaagc
     1861 actttatagc catattgaaa accacttgcc ccactaatgc cgacaataat acgttttttc
     1921 atcattaatg taccaaccat tcccagaaat aagacatcgg catcgcaagg agtagtgctg
     1981 gtagcatatt tgcgaccgga aagtttttaa ttccacaaat gcgaaagccg gttgcaaata
     2041 gcagtaaacc gccggttgcg gagaaatctg ccatcatatt ggcagtggtt aaaggcataa
     2101 tcacggttgc cagtagaatt aaaatccctt gcacaataat caacggcact gcaatcgccg
     2161 caatggcata gcctaacgaa gcagcgaaaa tcattgcggt gaagaaatct agaatcgatt
     2221 taatgtaaag aatacttgga tcgcctgtca ttccttcctt tattgcacca aaaatgccgg
     2281 taccgctcac acaaaacagt acaagcagag caataaattt ctctaaaaac tcttcttggg
     2341 aaagactatg caccggtggg aataggcggt caattaaacc acgagctaaa ccggcaactt
     2401 taccgattct gttttctaaa taaatcagtt caccgatgat cgtgcctaaa atcaatgcta
     2461 aggcaaccgc agacatatat tttactgagg cagtcagcat catacctaag ccgaaacagc
     2521 ataagccgaa taccagcggc aacgtagtgc gaatacgttc aggcaggtga ctccctaaac
     2581 aagcacccag cacgccccct aaaataattg caccggcatt cacaaaaggc ccgatcatag
     2641 tttcccttat ttagtgaaaa gtggcagtta gcatcattaa taagaatgag actacggcta
     2701 acagataaaa tttgagcgaa aacggttgtc cttttttgaa cgcttttgtc gcaaatacaa
     2761 tataaagtac taagaagagt aactttggta gcaaccaact gaattgtgct aaggtgaaaa
     2821 aatcataagc taagaaaata gcgacagcag caataccggt gataagtaag aaggtatcaa
     2881 ctgcgtgtgg ggcaatgcgc aaaattttat attgtcgcca atccacca
//
LOCUS       DANLXB010000241         2928 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLXB010000241 DANLXB010000000
VERSION     DANLXB010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            1..466
                     /locus_tag="PXD41_002431"
                     /pseudo
     CDS             1..466
                     /locus_tag="PXD41_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            477..962
                     /locus_tag="PXD41_002432"
     CDS             477..962
                     /locus_tag="PXD41_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL6289913.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(1000..1869)
                     /locus_tag="PXD41_002433"
     CDS             complement(1000..1869)
                     /locus_tag="PXD41_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6289914.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            1999..2790
                     /locus_tag="PXD41_002434"
     CDS             1999..2790
                     /locus_tag="PXD41_002434"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL6289915.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT          890 a          556 c          612 g          870 t
ORIGIN      
        1 ttatatgtgg tgggtgaact gcacgattat gaatttgagc atcagcaagt tgcggaactg
       61 aataattttc tcaaaagcct aattgctaat aaaatcaaat ctgttgaggc aaacttcgag
      121 gttaaggaat ccaaaaaagt ggaaggtagt tatagaatta ttttagatgg gaaatcactt
      181 acagaaagtg aaagaagtac ggtgatggtt taattcagct caaaatccat ctattactta
      241 tcaggcggaa gggaacttgg tgaaattagc caatagagaa gagcttttgc aaaaattccg
      301 atttaaacaa gcgcttgagg cgaatgtgcg ttattacaaa atgaaaagtg gtcttcaaaa
      361 tacggctgaa ggagcgttaa gtattgtaat gttgcctgtt gctgtagtag ctgttttacc
      421 attctatatg ttttgggttg gtgcttgtgc cacttacgga tgttaaataa ctttttatgt
      481 attctctata cctgaaaatt ttatcggaat gcgattggtg ttgtgatcca aaaacacttt
      541 ctacctacca gcaagaatgg cttctgcacg aagggtcact tacccaaaaa ttgtatgatg
      601 tcgcaaccaa tttcaacgtg gaagtagtac aagaaaagtg gattgcaaaa aacagtgaaa
      661 aaacgaccgc ttgtaatgaa gatgtttggt cgcgagaagt gttactgaaa gatggtgaaa
      721 aaaattggat ttttgcccaa actcttgtgc caagatcaac aatcgaaaat atcgctcaaa
      781 acgtgttgga attgggcaat cagccgattg gtttatggct attttctcaa aatcctactc
      841 gcaccaaatt agaatggaca caaacagaga acggtttatt cgctcggcgt ggggtgtatg
      901 aaattagagg gtattctctg gaaattcgag agcttttttt agaaaccttt ccttatttat
      961 aaaaaaatcg gttggtaatg acaccaaccg attttcatct tattttgcca agaactgata
     1021 aattgcagcc atatccactt cgctcaagcc tgaatcattg gcttgattgt aggttttagt
     1081 ggcttgctca ataagcgggt aagatttgcc taatttcgca atttcttcgc ttgccaaatt
     1141 aaaatctttg gtcatatgtt tcatcataaa cgcaggcgga aattcattag cttggtacat
     1201 cggcactttt gcttggaaga tcgggctgtt cataaacgag cctgaaatca tttcgattac
     1261 tttctctttc ggaatgccat attggtcggc gaagtttaac gcctcgccat aggcttgaat
     1321 gaagatgccc agtagcgagt tgatcatcaa tttaatccca ccggctttac ccacttcacc
     1381 ataatagaaa gtggtggtac taaaggcagc gaaaagcggt ttgagcaact caacggtttc
     1441 ttctttaccg gcagccagta ccaatagttt acctgcttct gccactttgc ttgaaccgga
     1501 aaccggagct tcaacaaatt ctgcaccgtg ttgggctagt agagcttcta ccgcctggtt
     1561 ttggcttggg gaaatggtgc tcatattcac cactactttg ccgtttaatt cagccaacac
     1621 ttcatcgctt aacacctgtt gcacggcggc atagtctgca atcatcaaga aaatcacatc
     1681 gtaggctttc accaattcca acacagaagg atataatgtg ccgcctgctt caactacctt
     1741 ttctgctttt gctgggtcgc ggttgtaaac gcccacgttc actccgctat ttagcaaatg
     1801 ttttgccatc ggttcgccca tttgccctaa accaatccaa ccgactgctt gtgtattaat
     1861 gtttttcatt atttttctcc ttactgaata aagcaaattg attattgcga ttttccctca
     1921 tcaagtcaaa tagagagaac ttgaatatag caatggaaaa gagtagcatt ttagcactta
     1981 cttttttgaa caataccaat gaaaccaaca attcttttat acgattccgg aatgggcgga
     2041 ttgacgattt acgatgaaat ccgaaaagtg ttaccgcacg ctcactattt atattgcttt
     2101 gataacgctt ttttcccata ttccgagaag tcggaagcag ttttaattga gcgagcggtc
     2161 aaaattgtgc aaaaaattgc agaaaaacaa ccgcttgata tggttgttgt tgcttgtaat
     2221 acggcaagca cagtggttct gccggcattg cgtgagcatt ttaattttcc gatagtagga
     2281 actgtaccgg caattaaacc ggcagcggca atttccgaaa ctaaagtcat cggcttgctc
     2341 gccactaaag gcacggttgc tcgcccttat gttgatgaat tgataagaaa atatgctcag
     2401 gattgtacgg tagaaaaaat tggcacaacc gatttggttg aaattgttga agaaaaacaa
     2461 cgaagcggta aagtggatat gaaccgacta caaaaagtgg tcgaggcttg gcaaggtaag
     2521 ccggaattgg atacggttat actcggttgt acccattttc ccttagtcaa agctgaatta
     2581 cagcaattat tgcccgatgt gaaatatttt gttgatccgg gtgtaggtat tgccaaacgg
     2641 gtgctaagcc ttttggaaga acgcaaattt caacaaaaag ccgattttga aaatcaagca
     2701 ttctgcacta aacaaagttc tgcatttaat atcaaacaag acgttatgca gaattgggga
     2761 tttaataatc tttcggtgat tgatatttaa acaaaacaat ctgttttgat gaaaaaaggt
     2821 tcagttgagc aaaaacttta aaaaagggct tgcactcaat tttaaaatcc ctataatacg
     2881 cagcacacaa cgacgcactg ttgtgaacga tttaaaattg atttccag
//
LOCUS       DANLXB010000242         2919 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLXB010000242 DANLXB010000000
VERSION     DANLXB010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..399)
                     /locus_tag="PXD41_002435"
     CDS             complement(<1..399)
                     /locus_tag="PXD41_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL6289916.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLS"
     gene            complement(403..1233)
                     /locus_tag="PXD41_002436"
     CDS             complement(403..1233)
                     /locus_tag="PXD41_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL6289917.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(1570..1685)
                     /gene="rrf"
                     /locus_tag="PXD41_002437"
     rRNA            complement(1570..1685)
                     /gene="rrf"
                     /locus_tag="PXD41_002437"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(1847..>2919)
                     /locus_tag="PXD41_002438"
     rRNA            complement(1847..>2919)
                     /locus_tag="PXD41_002438"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          860 a          760 c          528 g          771 t
ORIGIN      
        1 agataagcct tgctcgccat attgattcgg ttcaggatta ccggcaaata caccccattc
       61 taaaaagagc aacattccaa taaatgccgg catcacctgt ccaagcaata tctgcataat
      121 tccttgtgaa taaggagctg caagataaca aataatcggc actaatgcca ttaacagggc
      181 ttttgccgaa cgatttcggt cgtgtaatcg tttaataata atagcagaca ggctaaatcc
      241 tgtaattata agcggtagca cactcaataa agacaattca gccaaattta tccacatagc
      301 aaccataaac aggaaaagaa agtggattcc aaatccaatc caaaaacctc gtctatttag
      361 cctaccgtta aaactaaaaa gtgctttata ccaactcatt ttctacccta aagctacatc
      421 aagtaccatc attactacaa agcctaacat caggcttaaa gtcgcaatat cagtatttcc
      481 cgaactttgc gattccggaa tcagttcttc tacgaccaca aaaatcatcg ctccggcagc
      541 aaaggcaaga gcataaggta aaatagccgt catcgacagc acaaaaaccg ccccaatcac
      601 cgccgcaata ggctcaacca ctgctgacat agagccatac caaaatgctt tcttccgact
      661 atgcccttcg cctcgaattg gcaatacaag tgacgagcct tcgggaatgt tttgtaaccc
      721 tattccgatt gccaaaccga tagctcccat aatggaagca tctacgcctg aaacttgggt
      781 tgccaaagca ccgaaagcca cccctatggc taatccttct ggaatattat gaatggtaat
      841 cgcaagaaaa agcaaagtag attttgataa gccttgttta agttgatcat ttccttcagc
      901 ttgctcaatc ggcttactca agtgcaaatg cggcacaaca tagtcaatta atcgaataaa
      961 agctccaccg gcaagaaagc caatcgctgc aggcagccaa gctaaagagc cataatccgc
     1021 ctcggcatat tctaaagaag gtgcaagcaa agaccaaaac gaggctgcaa tcattacacc
     1081 tgcggcaaag cccatcatac tgtctaataa ttttcgatta accgatttaa aaaaatagac
     1141 aaatgacgaa ccgaaaatcg tacaacccca agtaaataaa cccgctaaaa aagcttgcca
     1201 tattggagaa agtgaaagga aatattcaaa caagaaatag taccagctaa aataaatatt
     1261 ggctcattct atcaaagatt cagggttatt aatatagtgt agccaaaggc tcaacgaaga
     1321 tttcacttgt aaaacttagc aagaaaataa ccgcttgcat ttccctttca taaatacaat
     1381 gaaaatccta acaagcggtc attttccgtg agttttttac ctttaccaca acaacaaaaa
     1441 accgcctgta tctctacagg cggctctttc ttggattact tgtactttgt ttatttgtac
     1501 ttattttgct tttgcttaag ttttcgcttt tgtaactttt agctttcgct taagctcgct
     1561 taaattaaaa cccgacgatg ctctactctc acatggcgaa tcaccacact accatcgacg
     1621 ttactgcgtt ttacttctga gttcggtatg gggtcaggta ggaccacagc actcttgtcg
     1681 tcgggaaaat tcttttctat ttttgaattt ctttaagtta acttcctaat ctaactctta
     1741 gttcacttta atagttagat taacttcctt aacttcgatt gatttcttct ctagtttcgt
     1801 tcttcttctc aatacaaaaa caagcctaaa aacatttgag cgttgtatag ttaagcctct
     1861 cgggcaatta gtactggtta gctcaatgtc tcacaacact tacacaccca gcctatctac
     1921 gtcgtagtct ccaacaaccc ttacacactt atagtgtggg agaactcatc tcgaggcaag
     1981 tttcgtgctt agatgctttc agcacttatc tcttccgcat gtagctaccc agcaatgcct
     2041 ctggcgagac aactggaaca ccagtgatgc gtccactccg gtcctctcgt actaggagca
     2101 gcccctctca attctccaac gcccacggca gatagggacc gaactgtctc acgacgttct
     2161 aaacccagct cgcgtaccac tttaaatggc gaacagccat acccttggga cctacttcag
     2221 ccccaggatg tgatgagccg acatcgaggt gccaaacacc gccgtcgata tgaactcttg
     2281 ggcggtatca gcctgttatc cccggagtac cttttatccg ttgagcgatg gcccttccat
     2341 tcagaaccac cggatcacta tgacctgctt tcgcacctgc tcgacttgtc tgtctcgcag
     2401 ttaagcttgc ttataccatt gcactaacct cacgatgtcc gaccgtgatt agcaaacctt
     2461 cgtgctcctc cgttactctt tgggaggaga ccgccccagt caaactaccc accagacact
     2521 gtccgagacc gcgttccgca atcttcgtta gaacatcaaa cgttaaaggg tggtatttca
     2581 aggacgcctc cacaatcact ggcgtgactg cttcaaaggc tcccacctat cctacacatc
     2641 aaaattcaat gttcagtgtc aagctatagt aaaggttcac ggggtctttc cgtctagccg
     2701 cgggtacacc gcatcttcac ggcgatttca atttcactga gtctcgggtg gagacagcct
     2761 ggccatcatt atgccattcg tgcaggtcgg aacttacccg acaaggaatt tcgctacctt
     2821 aggaccgtta tagttacggc cgccgtttac tggggcttcg atcaggagct tctcttgcga
     2881 taacaccatc aattaacctt ccagcaccgg gcaggcatc
//
LOCUS       DANLXB010000243         2913 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLXB010000243 DANLXB010000000
VERSION     DANLXB010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            56..2095
                     /gene="malQ"
                     /locus_tag="PXD41_002439"
     CDS             56..2095
                     /gene="malQ"
                     /locus_tag="PXD41_002439"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6289918.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2163..2894)
                     /locus_tag="PXD41_002440"
     CDS             complement(2163..2894)
                     /locus_tag="PXD41_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL6289919.1"
                     /translation="MGCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTW
                     IATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQ
                     FIGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGS
                     ALAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLV
                     MYVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          934 a          616 c          573 g          790 t
ORIGIN      
        1 attaatcttc acaagatcgt tattttaaca aatacagtaa aggaaaaaag tcataatgtc
       61 aaacaaacaa aatacagctc actattttta ctccccaaat attaaagagt atgccagccc
      121 ctctgctttt gagaaaatag agcggctttt aaataccgat aacgatttgc aaaaaaataa
      181 tcaaattcta ccgcttgtta aagtgattac tcagccaaat gccgagcaac aagcggtcga
      241 aatttcgctg aattttacaa atgtagcaaa gtggcaaatt gtgcttgaaa atggtgaggt
      301 tcggaacggt gaaattaagg cagagcaatc agttctaacc ctgcctgccg atttgccttt
      361 aggctatcat cagctttcta tttcaactga aaatgatgaa gaatcttgct cgctgattgt
      421 aacaccgccg aaagctttcc agcctaagcc attggaagaa aggaaaaagc tctggggtgc
      481 atttttacag ctttatactt tgcgttccga taacaactgg ggaattggcg attttggcga
      541 tctcaaacaa ttccttgcca acatttctga ttatggtgca gattttgtgg gcttaaaccc
      601 tattcacgcc ctctttccgg cagatcctga tgcggcaagc ccttacagcc cgtcctttcg
      661 actttggcaa aatattattt atattgatgt ttcagcagta gaagcctttc aacaatctga
      721 acaggctcaa caatggtttc acaccaaaga aactcaacag caacttgccg aattgcgagc
      781 caaagatttt gtcgattaca gccaagtagc gcaactgaaa ttaaaggctc tgcagtttgc
      841 ttttgagcat ttttcacagt catctcaaca acaatcgcaa acagcgttcg atgcctttat
      901 tgagcaagca ggcgagccat taaaaatcca agcaacgttc gatgctttgc accactggat
      961 ttcatctgaa tttggcgaaa aaggcggctg gacaaactgg gcggaggaat atcaaagtta
     1021 ctattcgcct aaagtagctg aatttcaaat atcgcaggca acgcagatac gtttttatat
     1081 gtggttgcaa tttgtggcaa accagcaatt agcagaatgc aaccggtttg ctcaatcact
     1141 ttcaatgccg attggttttt accgcgattt agccgttggt gttactcaaa gcggagcgga
     1201 aacttgggcg gataaagccc tatttgtgca agaggcgtca atcggtgcac cacctgatat
     1261 gcttgccccg aacggacaga gctggggact ttcgccaatg cacccgcata ttctacaaag
     1321 ccgaggttat cagccgttta ttgatttagt gcgtgctaat atgaaacatt gtggggcatt
     1381 gcgaatcgac catattctcg gcttcgcccg tatgtggtgg gtggcgaacg gtgaatcggc
     1441 aaaagaaggg atttatgtcc gttatccgct cgaagatttg ctctctattt tggcattaga
     1501 aagccaacgt caccaatgtt tagtgattgc agaggcactt ggcattgtgc ctgaaggcat
     1561 tttggactct ctcgagcaaa agggcatttt tgcctacaat gttttttatt ttgaaaaggc
     1621 agaaaacgcg tttaaaccgc tggaaaatta tccttaccaa gcgatgacaa ctctaagcac
     1681 ccacgattta ccgactattc aaggctattg gaaaggctat gattttgagc taggcgaaaa
     1741 atttgacact tacccaagca aagccgtatt gagaaagctg aaagaagagc gttcgtacga
     1801 ccgcttgaat atccgtaatg cggtggaaaa agtgatagca ctcgagccaa atgaagtggg
     1861 agtaacaata aaatttaccc accaattaca acgctatgtg gctcacactc acagtgcatt
     1921 attcggtaca cagcccgaag attggctcaa tatgttagag ccggtgaaca ttccgggaac
     1981 cagcaccgaa taccctaact ggagaagaaa attatccgca accaccgagc agatttttgc
     2041 aaataaagat attcaacaac tgctaaaaga tataaacgaa attcgtaaag gataataaca
     2101 agcggtcatt tttaggtaaa tttttacaaa aaatgaccgc ttgtaatttg tatttattcg
     2161 ctctattgct gatgttttct gtgaagttta atccagttgt aataaccgta aatagagtta
     2221 cataaataca tcacatacat caccaacagc ggcaagctgg tttcgccgtt ttggaagtac
     2281 attgccgtcc ataaagaaat ggtcataata ttcacgataa tccacaatgc ccattgctca
     2341 cggtagcgaa gtaccatcaa aatttgtgcc acaatcgaaa taaccactgt tgcaccatct
     2401 aatatagcta acgcactgcc taaatattta agcaattcaa tataaagaaa tgtgccgata
     2461 atggtggtaa tggcgacaat cacccactgt tttgcggtta aagctttagc aattacctct
     2521 tccacaccag cattatttac cgtgttttcg ctggtcatat ttttacgcca gaaatagaaa
     2581 ccgataaact gcaccggcac atatacaagt aaattcagca tcatttcacc atataactga
     2641 aaggtataag agatataagc ataaagcgaa acggaaatta agccgaatag atagttactg
     2701 atttttcctt taccgacaaa taccacgcat aaaatacctg ttattgccgc aatagttgca
     2761 atccaagtat cgggttgata aataaaaata ccgatttgaa tcgctaaaaa aacaatcaac
     2821 caacttgcct caaaagtagt ccaaccacta aaaaactctt gttttaactt agttgaaaaa
     2881 gatgaacagc ccatatttcc tccatataaa gtg
//
LOCUS       DANLXB010000244         2892 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLXB010000244 DANLXB010000000
VERSION     DANLXB010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..826
                     /locus_tag="PXD41_002441"
     CDS             <1..826
                     /locus_tag="PXD41_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL6289920.1"
                     /translation="TNQPIVIALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPN
                     EWFDIWCQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDS
                     DIVVDDNLSEMYWLNFNGIPLYAVEDYVHNHIPAYLDLDLSPYFNSGVLLINNILWKK
                     YSVCDELVTINEKIVNLTYGDQDALNIYFKGGWGALPIEYNYQVDAILELVLRREQEE
                     LARKNGYLDVIPKIIHYTSKFKPWKKELHTMQISTRKKYWFYYHLEWNDILEQHQK"
     gene            complement(872..1159)
                     /locus_tag="PXD41_002442"
     CDS             complement(872..1159)
                     /locus_tag="PXD41_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6289921.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            1279..1692
                     /locus_tag="PXD41_002443"
     CDS             1279..1692
                     /locus_tag="PXD41_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL6289922.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            1777..2769
                     /gene="mglB"
                     /locus_tag="PXD41_002444"
     CDS             1777..2769
                     /gene="mglB"
                     /locus_tag="PXD41_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6289923.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
BASE COUNT          871 a          449 c          635 g          937 t
ORIGIN      
        1 aaccaaccaa ccaatagtta ttgcattagc agctgattta ggctatcaaa ctcaagttga
       61 aaccttaatt aaatcgcttt gttatcatca ttctcatctt aagatttatc tatttcagaa
      121 aacttttcct aatgaatggt ttgatatctg gtgccaaaaa ttagccttat tatcgagtga
      181 aattattcct gtgaaagtct gtgtagattt ttcaaaatat aagagtttag agcatattaa
      241 tgaaacgggt ttttatcgtt accttattcc atatctggac gaagaacgtg tactatattt
      301 agattcagat attgtggttg atgataattt atcagaaatg tactggctta attttaatgg
      361 tataccttta tatgcagtag aggattatgt tcataatcat ataccggctt atcttgattt
      421 agacctcagc ccttatttta attctggggt actattaatt aataatatac tttggaagaa
      481 gtattcagta tgtgatgagt tggttactat caatgaaaaa attgtaaact taacttatgg
      541 cgatcaagat gctctcaata tttactttaa aggcggttgg ggagcattgc cgatagagta
      601 taattatcaa gttgatgcaa ttcttgaact agtattaaga agagaacaag aggaacttgc
      661 gagaaaaaat ggctatttag atgtgattcc gaaaattatc cactatacga gtaaattcaa
      721 accttggaaa aaagaactgc atacaatgca aatatctacg cgtaaaaaat attggtttta
      781 ctatcattta gagtggaacg atattttgga acaacatcaa aaatagctat catacaaaag
      841 ctgattcaag tgtttgaatc agctttttgt attagaaacg tgttcctaat tgaaaaataa
      901 ccacttctgc ttggcagcta aatttgaagt gagcaaccag ttcaaaaccg ctttcaatcg
      961 gggtgatttc actgctgatt tcacagggtt cagattcgac atcacgggct ttttgagtga
     1021 atttttcaag tgccgcttta gcttcatttt cgctttcata agtgcgctga atagtagcga
     1081 ctgtttcgct gttatctaaa atagaaccta catcaaatgt gttacagcct tcgcattcaa
     1141 tcggtttatc gtttttcatt ggctaatcct tctaaattga tgaataatgt aggtacttta
     1201 aaactaaatt gcgtaacctg caatcatcag tgaacgatta tttgatttag ttggtatttt
     1261 gcaaagtttg gaggaaaaat gaccgcttgg gagcgtgtgt ttcacgcgct gttatttgaa
     1321 tgtttcgcta ttatttttac ggttatctta acttcttggc tgacttctca tcgtatggtt
     1381 gatttaaccg cagtgattgt gatgatttcg gtgattgcaa tggtgtggaa tgttattttt
     1441 aactggggtt ttgataaggt gtttaccggt gagcgagtgc aacgtggttt aggcattcgt
     1501 attttgcatt cattcctttt tgagggcggt ttgctggttt ttactatccc attggtaatg
     1561 tatatgctcg atatcggctg gtggcaggcg tttgtgatgg atattggaat gaccttattt
     1621 gtattagttt attcggtagt ttttaattgg gtgtacgatc atttacgcct gaggtgggtt
     1681 aaatctggct aaattgtgaa ctagatcacg gtttccttac acaaaattcg ctatgcttga
     1741 attggttcat atttggcata gcaagaggga cattctatga agcgtacaat cttgagtgct
     1801 tttgcacttt ctgttatttg cggtgtgaat ctaagttacg cacaatctga aagcagagtg
     1861 ggggtaacga tttacaaata tgatgaccat tttatgactc aaatgcgtaa ggatatgcaa
     1921 aacgaggcga aaggcttcgc tgggttgaag tggtttatga atgatgcaca aaattcccaa
     1981 gtgaagcaat tagcgcaaat tgaaacctta cttcagcata aaatgcgtgt gttggcggtg
     2041 aatattgtga atgcaaatga gtcgaaaact attgtggaaa aagcgaaggc ttataatgtg
     2101 ccggttgtct tttttaaccg cacaccgagt aaacaagcgt tagaaagtta cgaaaaggcg
     2161 tactttgtga gcgctgatcc taaagaggcc ggtagaatcc aaggggaatt aattgcgaaa
     2221 gtgtggaaat caaaccccga tttcgatcta aataaagacg ggaaattgca atttgtattg
     2281 cttaagggcg agccgagtga tgtgagcgct gagcgttctc aagctgtggt tgaatcgctt
     2341 aatcaacaag gtgttcaggc agaagaaatt tacagtgaca cggcgagatg gcgtagaaca
     2401 ttggctcgca ataaaatgaa tgagtggctg gtggaaaacc gtgcagctga gattgaagtt
     2461 gtgatttcaa acaatgatga aatggcaatt ggtgctttag atgcgttaaa tgcacacgag
     2521 aaaagattgc cgatctttgg tattgatgcc ttgcctgaga cgttagcatt aatgaaaaaa
     2581 ggggaaatag ccggcacggt attaaatgat agctctgcac aagcgaaagc ggtggtgaaa
     2641 ttggtatcta atttggcaca aggtaagcct gcgctgaaag atacgcagtg ggaaagccat
     2701 tcctctaaaa cgatttatct tccacatatt ggtattgata aggaaaattt agggcaattt
     2761 ttaccttaaa tggaggagcg gggcgttata aatacgcccc ttattgatga taacaagcgg
     2821 tcatttttca gtaaaatctt gcaaatcctt tctcttttct tccaacagat ttgaatagag
     2881 cgaatattca aa
//
LOCUS       DANLXB010000245         2852 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLXB010000245 DANLXB010000000
VERSION     DANLXB010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(63..212)
                     /locus_tag="PXD41_002445"
     CDS             complement(63..212)
                     /locus_tag="PXD41_002445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289924.1"
                     /translation="MDNILITIHPTETIDITIDKLVVIHIGEEYGDTPDFLTIYQQAK
                     ELNDD"
     gene            complement(446..739)
                     /locus_tag="PXD41_002446"
     CDS             complement(446..739)
                     /locus_tag="PXD41_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289925.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGEESDSEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
     gene            complement(862..>2852)
                     /locus_tag="PXD41_002447"
     CDS             complement(862..>2852)
                     /locus_tag="PXD41_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL6289926.1"
                     /translation="FTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTP
                     APEDVDSAVSAVSAKIDTIQETLANADSALSSRIDTVNASVGSNSSKITQVSNAVASV
                     DGKLSATHTIKTETIAGGRKAIAGIAFGATADNRNAESSVIVMADKFEVVKNAQDGTP
                     VRLFGVVENKVAINGNLIATGSISGDHINANSVRTAVLTAGAIKTEHLAAGQISADKL
                     AIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRTIFNRNEQDNYGLKNG
                     GLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIEN
                     IEKPGGAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGK
                     ANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITA
                     NEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTI
                     TGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGK
                     LKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEAN
                     QSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS"
BASE COUNT          739 a          627 c          555 g          931 t
ORIGIN      
        1 tctctcctac gtctttacct aattgataaa atgcttctgc aagtgggtgt ttgtgtttag
       61 ttttagtcat cgttaagctc ctttgcttgt tggtatatag ttaaaaagtc aggtgtgtca
      121 ccatactcct cacctatatg gataactacc agtttgtcta tggtgatatc aatagtttcg
      181 gttggatgta tagtgattaa gatattgtcc atattcccgc cttaaatttg ggtttggtca
      241 gggataagtt ggatcgtgcc gtagtactgc cattttgggt ggatagctca atttgaggct
      301 ctgtgctgcc ctctactatg gcgtgtaaat ccagcctaat accctctaaa tttacaggct
      361 cgccatttgt ttgcctaaaa aaaaaggcga taacttacgt catcgcctct gaaaaactta
      421 aatttatgct tttgcattta gacccctaca ctacaatctg accggtttct ttgaggtggt
      481 tgtagatacg tcctaacata atctgcgttg gcgttttgcc aatatcctct tttgttagcg
      541 gtgcatcagt aatcgctttg gctgattgag catcaatata tttgtactca cttgtgatga
      601 ttacaaagtt tgttacctcg ctatcgctct cctcacctgt gccaacgaca tatttagcat
      661 tgagtgagcc gtcgtcttga gttgagtagc ttgcgatggt ggaatacatt gggtttaaga
      721 ttttgttaaa agttgtcata atttttcctt ttatcgatag ttgaaataaa aacaatcgcc
      781 tgaattgacc tgcaagcggt tggttttgga tatttaaaaa agctgtggct atccgcactc
      841 agtactacat tgaggcgata actaactgat agagatatat ttagccgtcg aaatggaata
      901 ggctaaaaca ataaaatcta aagagctacc acttgcattt ctatttaatg atttctctat
      961 tgtttttgtg attgattgat ttgcttctaa aatgaatgac tcacttccga tgatttcaat
     1021 atacctcctt gtcggcgctg catttatggt gacagttgct ttatagatat attcgtgtct
     1081 ataaattgga gaggaggagt tttctccatg ttcttgcccc tcataaatgc gattacgatg
     1141 tgaatatttt aatttgcctg taacctgctc tataacacct ccccctatta attgagatac
     1201 ttcaagttcg ccggtaaatt tgccagtagc cccctccaat cttgcaccct ttattgtgcc
     1261 gccagagata gttgtaccgc taattgttgt accattaata cttccgccac taattgtatt
     1321 accagtaatt gtcgtacctg taattgtacc agcagttacc ttaccaagat ttgccgatat
     1381 tgccgctaaa ttgtttacat ttagcttatc cgcagtgatc gaactcccca caatatgact
     1441 tgcattaatc gagtttgctg ccatatttcg agctgcaatc gtgccggttg cgatttcgtt
     1501 ggcggtaatg gtatttgctg caatttgttg agcagtaacg gtattagtaa ctattgagcc
     1561 accgtggata gcggttacac cggcattttg ccaagggcta ggctgagtga tatctgtaac
     1621 attatcacta gcctcctcaa gcattggtct acgagcaaat aaaaatggat tagctttacc
     1681 ttgaatatta tctaatcgta atgcgaaacg aatacagcct gaagtaggtg cagtaaatac
     1741 aaccttaacc cgtttcatat ttttaaattc gccttgatga gcactatagc cagtaattac
     1801 ctcgctgttg cctatccgac ctaaataagc accaccaggt ttttcgatat tctcaatgac
     1861 taatttagct tgcccacgat gacaagctaa ccatacggag gcaatatatt ttttattagg
     1921 cacaacatta atatcctgag ataaccaccc aattcgccca gtatcagagg tttcctttgt
     1981 agtgctatac cgcatcgaaa atactaactc atttggtagt cctccatttt ttagtccgta
     2041 attatcttgt tcattcctat tgaaaatagt acgggtgtca atatttagcc gatcaccaac
     2101 ttctcctcgc cagtagttcc agccaaacgg agctattgac aaatcgggtg ttgcaaaaat
     2161 aggattaacc agcaaattcc cacctagccc aatcgctaac ttatccgccg atatttgccc
     2221 tgctgccaaa tgctccgttt taatcgctcc tgcagtcaat acagcagttc tgacggaatt
     2281 tgcattgatg tggtctcctg aaatcgagcc tgttgcgatt aaattcccat taatcgctac
     2341 tttattttct accacgccaa atagtcttac tggcgtgccg tcttgggcgt ttttcacgac
     2401 ctcaaattta tctgccatca caatcacaga agattccgca ttacggttat ctgccgttgc
     2461 accaaatgca ataccggcaa tcgctttgcg tccaccggca atggtttcgg ttttgatggt
     2521 atgggtagca gataatttgc cgtccacact tgctaccgca ttgctgactt gggtaatttt
     2581 agatgagttt gatccgactg aggcattgac cgtatcaatg cgagagctta atgcagagtc
     2641 ggcattcgct aaagtctcct gaatagtatc aattttagcc gaaactgcac taaccgcact
     2701 gtccacatct tcaggtgctg gcgtccagtc tgtggctacg ttgccttttt caagtttgac
     2761 gctgtgaaac gctaaccaat ctgtggtctc ataagtacca tttacaccaa caagcagata
     2821 ggctcgctca cttgtccatt cggcagtaaa gg
//
LOCUS       DANLXB010000246         2844 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLXB010000246 DANLXB010000000
VERSION     DANLXB010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            152..298
                     /locus_tag="PXD41_002448"
     CDS             152..298
                     /locus_tag="PXD41_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL6289927.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
     gene            365..547
                     /locus_tag="PXD41_002449"
     CDS             365..547
                     /locus_tag="PXD41_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289928.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            570..1145
                     /locus_tag="PXD41_002450"
     CDS             570..1145
                     /locus_tag="PXD41_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL6289929.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            1216..1386
                     /locus_tag="PXD41_002451"
     CDS             1216..1386
                     /locus_tag="PXD41_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289930.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            1386..1940
                     /locus_tag="PXD41_002452"
     CDS             1386..1940
                     /locus_tag="PXD41_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289931.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            1924..2349
                     /locus_tag="PXD41_002453"
     CDS             1924..2349
                     /locus_tag="PXD41_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL6289932.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            2438..2785
                     /locus_tag="PXD41_002454"
     CDS             2438..2785
                     /locus_tag="PXD41_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289933.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
BASE COUNT          999 a          468 c          635 g          742 t
ORIGIN      
        1 atcatttgca tattttaaat cagttaaaaa gaaagtctta gttaaaaaac cttttcaatg
       61 ccctttaaaa atctccccta gcccctcttt ttcaaagagg gggacaagat agaagggcat
      121 ttataaagtg ttttaaccac aggaggaaaa aatgaaaaca gaacaaaagg cgaccgagtt
      181 tgaccgctac aaacattatg ccgagaaagc agcggaagcc gaacgtaaag gcaattatgc
      241 agaagcccaa gaccattgga aagttgcaaa attatcagca aaaaagaccg ctaactgaga
      301 ctgggcgggg caacgagcgg tattttgtaa acgtatgcat aagaaaccgt tttaggagga
      361 gatgatgacc gaacaagaga aaaacgaact taacagccaa ttaaacgagg cgttaatgca
      421 gattattcag gcacaaaaat atttaaaaca gagtgacttt attcgcagtg gtgtttatct
      481 cggcacggtg caggatttgt tgccaaaggt gcatttgaag ttattaacgg caaatcggaa
      541 acattaacca ccccagtaag gagttaagaa tgaaatttag attttttaaa ggggatataa
      601 cccaagagcc actaaaaagc atttatgcag attatcaagt atctaaagaa gaacgcaagg
      661 ataagctcaa tgctatttta gaaaaatatc ctttcaatga tggattaatt agtaggtcag
      721 gctggtttca tagaatagtt atagggattg cttgtaaagc aaccaatatt agccaagttt
      781 tagatgttaa agggttcaag gtcggtaaat ttaatgatga gttttacctc gtcaaacctg
      841 ataaacgtta cgaaaaaggg aaagaacttg cagaagattt taaagcaatt aatgaaattt
      901 atgagaaaca tcgtgatttt tcgccctata tcttaaaacg tttgaatatg ctttattttg
      961 taagtgattt tagttattcc ccaacatcag gtagaagtta tttagccgta gcaggcattt
     1021 gtgaaaacac cttactggtt gaaatgccaa tgcctattga taaaaatgat gaaccatttc
     1081 ctgagattgc agagggattg gttgagatta aagaaagtga gtttttagca atacagggga
     1141 agtaataaaa cccatttaca gcccatttaa cccctattta agtgggctga ataatgtgtt
     1201 ttataggagc ataaaatgga atatcaaaaa attcctgaat atcggttatg taaaaagaaa
     1261 tcgggagaga ttgtgttaca acaattagtt atttgcgagc taactccagc aacttggcat
     1321 aacccatacc ctgatagtcg aacttattgg gttgatctcg aaacaataga agaaggaaca
     1381 gaatgatgaa actatgcaaa tgcccgattt gccattccga catctcgttt gaggcgttga
     1441 ttgaagatga tgcagggcgt gagttgttaa atacgatagt caatatcggt gggaattgtg
     1501 ggcgtgcggt ggtggcgtat ttagggttat ttaagccaca gaaaaacagc cttgccaata
     1561 gccgagcctt gaaaattgtg cagagtttat tggagcttta ccctccctct aatgtgttag
     1621 aaaaagcctt aatggatacg gtggaacaag taagacggaa tcggcgtgaa actggcagat
     1681 gtgagccgct ggcaaatcat aattacttga agaaagtata tgaaagcgtg aagccacaat
     1741 ttgcagtagt aagaagtgaa gcgaaagcag tgagtagcct tgagcaacag caacggcaag
     1801 cagaccaaaa gaaacacgat gccgtgatgt atgtggaacg aatgaagcaa atggggcaac
     1861 tggaagccgt taagaacacc gaaagttatc aaatttggct gaaatggcag gaggaaaagc
     1921 aaaatgcaac cgcaaactag aaagcagatg atacagaaaa tccatatcgg caaaaatgag
     1981 ctaaaactgg atgataacgc ctataaaatg ctgttgttag aggcggtgga taaaccaagc
     2041 tgctcaatga tgaccgatag cgaattaatg accgtactgc aaacaatgaa agctaaaggg
     2101 tttgtggtga agtcgaaaaa atacggtaaa cgcccaacag caagtaaaac cgcccctcac
     2161 cggcaagggt tgataaataa aatcggggcg ttgctgtatc aaagccaaaa gccgtgggat
     2221 tacgcccacg ccattgccaa acgctcgttt ggtattgagc gggtgcaatg gctgacagat
     2281 gatcagttgc ataaattagt gcagatattg gcgagttata accataggca cggaatgagt
     2341 gttaaataat aaatttattg catagcccac tttaaatagt gggctttttt gtggtagatt
     2401 ttaggtgttt tttaatcaac ttttaaaggt atttaaaatg aaagaactgc tattaacaac
     2461 cttatgctta ttgtcgttac cagcaatagc aatgacagaa aaagctgaac aagaaacagc
     2521 aaatgctctt gtaagtggtg attatcaaca gttaagaaat gtagcttacg gaatggaaac
     2581 tggttcgttt gggcacgatc acaatcctat tgctgcttgt gctttacgcc gtgttatttt
     2641 gcttgttaat tcggacaagg ttgatatgac tgactttaac aacgaggcga ttgcttgccg
     2701 taaaattgag gttacagata atcaacaggc ttgggaaact gcctttacca ttgcaaaatc
     2761 catttctgca accaagaaaa aataaattta gaccgctttc aagcggtctt ttttatttac
     2821 ataaaaaaat ttaagaaaaa aacg
//
LOCUS       DANLXB010000247         2840 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLXB010000247 DANLXB010000000
VERSION     DANLXB010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            127..1194
                     /gene="hisC"
                     /locus_tag="PXD41_002455"
     CDS             127..1194
                     /gene="hisC"
                     /locus_tag="PXD41_002455"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6289934.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            1379..2467
                     /gene="hisB"
                     /locus_tag="PXD41_002456"
     CDS             1379..2467
                     /gene="hisB"
                     /locus_tag="PXD41_002456"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL6289935.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            2562..>2840
                     /locus_tag="PXD41_002457"
     CDS             2562..>2840
                     /locus_tag="PXD41_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289936.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKED"
BASE COUNT          836 a          649 c          673 g          682 t
ORIGIN      
        1 atattgggta acagataaaa acaatcatca agcacaacag ctttataata aattagctaa
       61 tgatagcggt attattcaat atcgaaaaaa tttctaaact atgtataaat tatacaggaa
      121 cacaatatga caatttcaca actttcccgt aaaaacattc aagctctcac cccttaccaa
      181 tcggcacggc gtttgggggg tagtggcgat gtgtggctga atgccaatga atatgccctt
      241 tcgccaaact ttgatttaac cgaccgcact tttaaccgct accctgaacc tcaaccgcag
      301 gcggtgattg aaggttacgc ccgatatgca ggcgttgcac ctgaaaacgt gctggtttcc
      361 cgtgggggcg atgagagcat tgagctgatt atccgagcct tttgcgaggc aaacgacagc
      421 attctctact gcccaccaac ctacggaatg tacgccgtga gtgccgacac ctgtggcatt
      481 gcgaccaaaa ctgtgccttt aaccgccgat ttccagttgg atttagccca aatcaaagct
      541 aacctcgagg gcgtgaaagt ggtgtttgtg tgcagcccga acaacccgac aggcaactta
      601 atcaagcggt cggatttgtt cgaacttttg caaatcaccg caggcaaagc gattgtggtg
      661 gtggacgaag cctacatcga attttgccct gaagctcgct tggtaagcga gctggcgaat
      721 ttcccacatt tggcgattat ccgcacccta tccaaagcct ttgccttggc gggtttgcgt
      781 tgtggcttta ccttggcaaa cgctgagctg atcggcgtgt tacaaaaagt gattgccccg
      841 tatccgctgc ctgtgcctgt ttccgacatc gccgcccaag ccctctcccc acaaggcatt
      901 gagcagatga aaacccgtgt ggcggaagtc atcaccctgc gtgccgaatt gcaaaaaaat
      961 ctggaaaact taccgcttgt agaacaagtt tttgacagcg aagccaacta cctcctattc
     1021 aaatgccaag acggacaaaa agtcttcaaa gcactttggg agcaaggcat tattttgcgt
     1081 gaccaacaca aagcgttagg attgcaaaat tgcattcgga ttacggtggg ggcgagagag
     1141 gagaatttga gggtggttga ggcgattaca gcactgagcc aatttcagag atagaattta
     1201 acgagcagta ttttaagaga catttatagc ctagcacggc atagccgtac taggttacgc
     1261 ataagtcagt ccctttggga ctgaatacag agaggcaaag tctctcacta atgcttaacc
     1321 ccatatgcct tggcgtgtgg ggagagtaat gaataagata cagatacagg agaaaccaat
     1381 gcaacccacc ctttttatcg accgtgacgg cacgttaatt gatgagccaa aaaccgattt
     1441 tcaaatcgac agcttggaaa agctgaaatt cgagaaaaac gtgattcctg ccctgctcaa
     1501 actcaagggc aaataccgct ttgtgatggt tacgaaccaa gacggcttag gcacgagttc
     1561 gttcccacag gcagatttcg acaaaccgca caatgcaatg atggcgttgt tcaactcgca
     1621 agggattgaa tttgatgatg tgctgatttg tccacacaag cccgaagacg gttgcgattg
     1681 ccgcaaaccg cacaccaaac tgctacaaaa atatatcgac cgccaactgt tcgacccagc
     1741 caacagcttt gtgattggcg accgtgctac cgatgtgcaa ctggcggaaa accttggcat
     1801 tcgggcgttg caatatcacc ctgaaaaact gaactgggat ttgattgctg aaaaactact
     1861 gggcgaagcc gtcaccaaca ttggcgagcg accaaagcgc tttgccgaag ttatccgtaa
     1921 aaccaaagag accgacatca aagtgcaagt gtggctggac gaaacaggca acaacgaaat
     1981 cagcaccggc gtgggctttt tcgaccatat gcttgaccaa attgccaccc acggcggttt
     2041 tagaatgaac atcaccacca aaggcgactt gtggattgac gaacatcaca cggtggaaga
     2101 caccgccctc gccctcggca ccgcattaaa acaagcgatt ggcgacaaac gcggcatcgc
     2161 ccgtttcggc ttcgtgttgc cgatggacga aagccgtgcg gaatgtgcga tggacttatc
     2221 aggcagacct ttcatcaagt tcaaagcgga tttcaaacgc gacaaagtgg gcgatttcag
     2281 caccgagctc accgaacact tcttccaatc catcgccttc acgatgctcg ccaccctgca
     2341 catcaaggca aaaggcgaca acgaccacca caaaatcgaa agcctgttca aagtcttcgg
     2401 cagaacactc agacagtgca ttcgtattga agggaatgaa ctaccaagca gtaaaggtgt
     2461 attataatca ccgtaggggc gggttttaac ccgcccgaaa gtgcggttga aatttgcaaa
     2521 gtttttgggg attttgaccg cttgttataa aggatatatt gatgattaga gaagttattg
     2581 actttataaa gaataataaa tggtatgttc tgttagttgt attgttatta ggattatatt
     2641 tttatcagtt tcacggggga ttatcctcag atagtgaaaa atgggatcat tttggtagct
     2701 atattggtgg tatattttct gctgttactt tattgagtgt tttgcatgga atgcagttgg
     2761 aacgtaaaag atttaaggag caaaaagaag aatttgaaaa tgacaaaaga gtattagaaa
     2821 agagaagaag aaaagaagat
//
LOCUS       DANLXB010000248         2750 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLXB010000248 DANLXB010000000
VERSION     DANLXB010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            156..1652
                     /gene="pepA"
                     /locus_tag="PXD41_002458"
     CDS             156..1652
                     /gene="pepA"
                     /locus_tag="PXD41_002458"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL6289937.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
     gene            1826..>2750
                     /gene="cysK"
                     /locus_tag="PXD41_002459"
     CDS             1826..>2750
                     /gene="cysK"
                     /locus_tag="PXD41_002459"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003899275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL6289938.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTL"
BASE COUNT          862 a          548 c          614 g          726 t
ORIGIN      
        1 ttatctatac gaccgcaaaa aacatttaat atttgcaaat aaaaagtaaa ttattttaaa
       61 taatgattta catcagggta tatctatatt ttacttatca ttgatgatta tgttggcatt
      121 ataaaatctg tagcaataaa aattaaggag gaaaaatgga atttagtgtc aaaaatggca
      181 gtgttgagaa acaaagaacc gcctgtttgg ttgttggtgt ctatgaaccc cgccgattat
      241 gttctgccgc agaacagctt gataaattaa gtaacggcta tatcagcaca ttactgagaa
      301 gaggagattt agaaggcaaa gcagggcaaa ccttactctt gcataatgtg ccgaatgtac
      361 tcgctgatcg agtattatta gtcggctgtg gaaaagagcg tgaattaact gaacgccaat
      421 acaaacaaat tattcaaaaa agtgtacaaa ctattaatga aaccggttca atggaagctg
      481 tcagcttttt aaccgaactg cacgttaaag gtagaacacc ttattggaat gtgcgatttg
      541 cggtagaggc aatccaagaa caactatatg cctataacga tttcaaaagc atcaaacctg
      601 aagttcgccg tgaattacgc cgtgtgattt ttaatgtcgc acaccgtaaa gatcttcctg
      661 atgccgaacg agctttagaa cacggaaaag ccgtagcact tggaatcagc cacgctaaaa
      721 atgtagcaaa ttgtccgcct aatgtgtgta atcctcacta tttagccgaa ttggctaagg
      781 gtttagccta cgactatcct gccatttcaa ctaccattgt tgatgaaaaa cagatggcag
      841 aattgggaat gaatgcttac ttagcggttt ccagagcctc tgaaaatgag gcctttcttt
      901 cagtgattga atataaaggc aacccgaatg ctgatgcgaa gccgattatc ttagtcggca
      961 aaggaatgac ctttgactct ggcggtttat ccattaaacc tgcggaggcg atggacgaaa
     1021 tgaaatacga tatgtgcgga gctgctactg tttacggtac aatcaaagca attgccgaga
     1081 tgaaattacc actcaatgtt atcggcttac tcgccggctg tgaaaatgcg gttgatggca
     1141 aagcctatcg accgggggat attctcacta caatgtctgg tttaaccgtt gaggtactca
     1201 acaccgatgc agaaggacgt ttagtgctat gtgatgctct cagctatgta gaacgttttg
     1261 aaccggaatt agtgattgat attgctaccc taactggtgc ttgcatgatt gccttaggta
     1321 atcataacag cgggctgatg tcacctcata acggtttagc aaacgaactc ttagctgccg
     1381 cagagcaagc cgatgacaaa gcgtggcgtt tacctttagg ggaagaatat caagaacagt
     1441 taaaatctaa ctttgctgat cttgctaata tcggcggacg tttaggcgga gcctgtactg
     1501 ccggtcaatt cctctctaac tttacaaaga aatatacttg ggcgcatcta gatattgccg
     1561 gcacggcttg gaaatctggg gcagccaaag gggcgaccgg cagaccggta tccttactaa
     1621 cacaattttt gatcaataaa gcccaggtct aactctcaca agcggtctga ttttatcgag
     1681 tttttgcaaa aagaaaatca gaccgatcct cttcatacgc ccctatattc tttttagtta
     1741 tatcaaataa attccagcta ctagaaaagc gattaaaaat aagtatgata aatcccaatc
     1801 tcaatactta ttaaggaata tcactatgac tatctatgca gacaactcat actcaatcgg
     1861 caataccccg ctggtgcgtt taaagaattt tggcaacggc aatattgtgg taaaagtgga
     1921 agggcgtaac ccaagtttta gcgtgaaatg ccgtattggt gcgaatatgg tgtggcaagc
     1981 agagaaagac ggtattctaa ccaaagacaa agaaattgta gatgcaacca gcggtaacac
     2041 tggaattgcc ttggcttatg tagcagccgc tcgtggttat aaattaacgc tcacaatgcc
     2101 ggaaacaatg agtaccgagc gtaaacgctt attgcgtggc ttaggagtaa atttagtctt
     2161 aaccgaaggg gcaaaaggaa tgaaaggagc gattgcgaaa gctgaagaaa tcgcggcttc
     2221 cgacccagat cgctatgtta ccttaaaaca gtttgaaaac ccggcaaacc cggcaattca
     2281 ccaacaaact accggtcctg aaatttggga tgcaactgaa ggtaaaattg atgtattagt
     2341 ggcaggcgta ggaacaggtg gcactattac cggtgtttcc cgtgctatta agcaagataa
     2401 aggcaagcaa attatttcag tggcggtaga accgagtgaa tcgccggtca ttacgcaaac
     2461 tttaaacggt gaagaagtca aaccgggccc gcacaaaatt caaggcattg gtgcaggctt
     2521 tattccgaaa aacttagatt tatcactgct tgaccgtgtt gaacaagttt caagcgaaga
     2581 agcgattaca accgcacgcc gtttaatggc agaagaaggc attttaggcg gtatttcatc
     2641 aggtgctgcc gttgctgccg cagatcgcat cgctaaacta cctgaatttg ccgataaatt
     2701 aattgtagtg attctgcctt cagcctcaga gcgttattta agtacgctac
//
LOCUS       DANLXB010000249         2678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLXB010000249 DANLXB010000000
VERSION     DANLXB010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            139..579
                     /locus_tag="PXD41_002460"
     CDS             139..579
                     /locus_tag="PXD41_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6289939.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXD41_002461"
     CDS             605..892
                     /locus_tag="PXD41_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289940.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXD41_002462"
     CDS             993..1916
                     /locus_tag="PXD41_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL6289941.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXD41_002463"
     CDS             1906..2646
                     /locus_tag="PXD41_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL6289942.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
BASE COUNT          801 a          531 c          571 g          775 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacat
//
LOCUS       DANLXB010000250         2606 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLXB010000250 DANLXB010000000
VERSION     DANLXB010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(18..554)
                     /gene="hpt"
                     /locus_tag="PXD41_002464"
     CDS             complement(18..554)
                     /gene="hpt"
                     /locus_tag="PXD41_002464"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL6289943.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(593..1942)
                     /gene="pmbA"
                     /locus_tag="PXD41_002465"
     CDS             complement(593..1942)
                     /gene="pmbA"
                     /locus_tag="PXD41_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL6289944.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            2041..2571
                     /locus_tag="PXD41_002466"
     CDS             2041..2571
                     /locus_tag="PXD41_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL6289945.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
BASE COUNT          786 a          570 c          460 g          790 t
ORIGIN      
        1 gtagtgattg agttttttta ttcaatcact actttagcaa tataatctaa atgacgatat
       61 ttttgggcat aatcaatccc ataacccacc acaaattcat cggggatctc aaatcccacc
      121 cattttacgg gcacatcaac ttcgcggcgg caaggtttat ctaataaagt acaaatagca
      181 agtgaatttg gctcacgtaa cttgagaatc tcccctacct tgcttaaggt gaagccagta
      241 tcaataatat cttctacaat caatacatct ttaccttgaa tttcgccatc taaatctttt
      301 agaattttga catcacggct ggattccgtg ctgctgccat agcttgatgc ggttagaaaa
      361 tccacttcta caggtaactc tagctttctt actaaatctg ccataaacat aaacgagcct
      421 cgcaataaac caaccactac aaggttttgg cactgttttt ggtgatagtg ttgattgatt
      481 tcttttgcta attcattgat tcggtttaat acttcttctt ttgaatgtag cgtttcgata
      541 tgatgttttt ccattgattt ctccaaataa aattgattac aagcggccgt ttttactcgc
      601 ctgaaaccat cattttttct aataagattg aacctgtttg gatatttgag cggtgttcaa
      661 tatcatcgcc taccgccact aaatttttat acatatcttg cagttgccct gcaatggtaa
      721 tttccgctac agggtattga atttcaccgt tttctaccca aaatcctgct gcacctcgag
      781 agtattcccc tgttacgcta ttaatcgcag aacctagcat ttccgttact aataatcctg
      841 ttcccatttc cttaagtaac gtatttaaac caccttgacg atttggttta actaaccagt
      901 tatgaatacc acctgcgtgt cctgtacttt ttaaccccat tttacgccct gaatagctag
      961 tcattaaata cgtttgtagc acgccatcag taataatttc acggttttgg gtaattacac
     1021 cttcactatc aaacgcagaa gaggctaatt gacgcaacaa atgcggacgc tctgaaatcg
     1081 caaaccattc aggcagaatc tgttcgccta atttatctaa taagaaactt gatttgcggt
     1141 ataatgcacc gccactaata gctccggcca aatgccccac taaaccggtt gccacatcgt
     1201 tatagaaaat cacagacatt tcgccggtct taattcgttg cggattcaat ctatctaccg
     1261 ctttaattgc agcttgctcc cctacccatt tcggtgcttg taatttatca aactcacgga
     1321 aaatggtgta ttcataatca cgctcaagct gatcttcata agctgaaatc acgctacaag
     1381 agagtgaata tcggctcgac aggtaactct gcaacattcc gtgcgtattg ccataaacac
     1441 gcacgccact gtgagaattg aaagttgccc cgtcactatt cacaattttt tcgtctgcat
     1501 ttaaggcata atgctccgct tcaatcgcca attcgactgc ttgatcaact gaaatatccg
     1561 cttggtggta caattccaaa tcttctgcct caaaggcaag caattcttta tcagcaagcc
     1621 cggtacaagc atcttctgag gtatattttg caatcgcaag agctgcttca accgtttttt
     1681 gaatcgactc tggctgaaga tcggaggtgg aagcattacc tttgcgtttg cctaaataaa
     1741 ccgaaatacc gagagaacca tcgttattga actcgatgtt ttcaacttgc tctaaacggc
     1801 ttgaaaccga aagcccggca actttagtca cgcctacttc cgcctctgcc ccagcctgtt
     1861 ttgcaaaatt taaggcaaat tcgaccgctt gtcgtagctc ctgttcttgt tgtaacaagg
     1921 tttgtttatc tgtaattgac attttgttcc attgattgat tgcattgatg aatatattct
     1981 aactcaaatt tctgttagaa tacggcattt tttagagttt atgtaatgaa aggataaaga
     2041 atggctaaaa aacggagcaa aaacgaaatt gactggacag atgaggaaga agaaatcatc
     2101 tgggtcagca aaagtgagat aaaacgagat tctgaacact taaaaaaaat tggggctgaa
     2161 ttgatcgaat tgaccccaca aaatttggaa aaaattccac tagacgatga tttaaaagag
     2221 gcaattcgcc aagctcaagg ctttaaaatg gaggctcgcc gccgtcaaat tcaatttatc
     2281 ggcaaattat tacgcaaccg tgaccaggag ccgattcaag aagccttaga taaagtgaaa
     2341 aatcgccata atcagcaaca agccctatta cataaattgg aattagtgcg taatcaactg
     2401 attgcaatgg gcgatgcatc attagataat ttattgacgg aatatcctca attagaccgc
     2461 caacatttgc gtaatttaat tcgtggggca attaaagagc gtgaagccaa taaaccggca
     2521 aaaaattacc gtgaaattta tcaatattta aaaactgaaa tcgtggagtg attattatgg
     2581 agtacctatc aaccattctt aaagct
//
LOCUS       DANLXB010000251         2602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.253, whole genome shotgun sequence.
ACCESSION   DANLXB010000251 DANLXB010000000
VERSION     DANLXB010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            22..834
                     /locus_tag="PXD41_002467"
     CDS             22..834
                     /locus_tag="PXD41_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6289946.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKGNCTKKVTVNYTLDTRK
                     YYGSVFNELLEEPFLLSEYDAYQFTNEVIKFHSEESLKAWGGCLIWEQNNGS"
     gene            966..1664
                     /gene="aphA"
                     /locus_tag="PXD41_002468"
     CDS             966..1664
                     /gene="aphA"
                     /locus_tag="PXD41_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL6289947.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1845..>2602
                     /gene="udp"
                     /locus_tag="PXD41_002469"
     CDS             1845..>2602
                     /gene="udp"
                     /locus_tag="PXD41_002469"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL6289948.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
BASE COUNT          826 a          424 c          552 g          800 t
ORIGIN      
        1 gtagctgtta tcagttcaac aattggtcgt cctgaattag aaagagctgt tttaagcgta
       61 caaaatcaga cttatccttg taaacattat gtttttgttg atggagagaa atatcaccaa
      121 caagcggctg atattttaaa gaattttcca agtgttattg ttacttatct cccaatgaat
      181 accggggctg atggttgggt aaatagcagc attaatgcaa ttgcaccatt tttagtgaaa
      241 gaagatatta tttgttatct ggatgatgat aattggtttg aacctactca cgttgaatct
      301 ggtgtgcatg ctttattaga aatgcaatct gattatgctt actctttacg taatttttat
      361 gatttagatg gcgagttttt gtgtattgat acgattgaat cgttgggaga atataattgc
      421 gtttatcaag aaccattaga atgtaattat caattaggtg gtgttaaagg tgttttatca
      481 ataaatctga atgattgtca gcatattgat acgaattgct attttattcg tagtgagata
      541 gctcgcctta tcagtacggc ttggtacaca ggtattcata atgatagaaa tgtatataaa
      601 aaattacaag aattggcact aaaaggaaat tgtacaaaga aagttacggt taattatact
      661 cttgatacac gtaaatatta tggatcagta tttaatgaat tattagagga gccattttta
      721 ttaagcgaat atgatgccta tcaatttacg aatgaggtga ttaaatttca ttcagaagaa
      781 agccttaaag cttggggagg ttgcttgatt tgggaacaga acaatggctc ataagcgtta
      841 agcgtaatcg tttgcttgtg atcatattca caaaataagg tttttgtatt agctaagagt
      901 gcctaataag attaaaatag gtatggttaa tcatatggag gtattttata aaatttacat
      961 taaaaatgac ggcagcgaca atgtttgcat ctcttattgc tttttcagca caagcaggcg
     1021 gaccaaaagt agcttatacc cagccgggaa ttgatatgcg aacacatgaa gcacagcaag
     1081 cgccaattca ttgggtatct attgagcaaa ttaaagaaag catcaaagat ttacccccta
     1141 tggcggtaag ttttgatatt gatgatactg ttgctgcaac tagcggttgc ttccactacg
     1201 gaaagcaaaa atattcgcca gacgatttca gctacttaaa aaatcaagat ttttgggacg
     1261 aaattaatgc tggctgtgat aaatattctt tgccaaagca agttgctatt aatttaataa
     1321 aaatgcacca agaacgtggt gatcaagttt atttaattac ggggcgtacc gcaggtaaaa
     1381 atgaacaagt tacaacgatt atgcaaaagt atcttggtat taaaaatatg caaccggtaa
     1441 attttatggg ggggaaagca cattcaacaa aatatgataa aacccctgcg attattgaac
     1501 ataaggtgca aattcactat ggtgacagtg atgatgatat cttagctgcc cgtgaagccg
     1561 gtattcgagg tattcgtata cttcgtgcag caaattctaa ttatacgcca ttccctcagg
     1621 ccggaggata tggtgaagaa gttgttgtca attcaagtta ttaatttctt agtctgaaat
     1681 atggccacca ttgcgtggcc atcatttttt atttatataa tgacgaaacc gtttaccttt
     1741 gatctagttc acaaaatcaa actttgcttg caaaaaattg tcgtaaatta accgcttgct
     1801 aagatagaat ggctcatatc cagttagata aaaaggagat aaaaatgtct gaagtatttc
     1861 atttaggttt aaccaaagcc atgctcaaag gtgcaaaaat tgcaatcgtt ccgggcgatc
     1921 cggctagaag tgaacgtatt gccaaaaaaa tggacaaccc agagttttta gcctcaaccc
     1981 gtgaatttac ctcttggtta ggttatttag atggcgaacc ggtggtggtt tgttcaaccg
     2041 gtattggcgg accgtcggtg tcgatttgtg tggaagagtt agcacagtta ggtgttcgca
     2101 cattcttacg cattggcaca acaggtgcaa ttcaagagca tattaatgta ggcgatattt
     2161 taattaccac cggagcggtg cgtttagatg gtgcgagcca acattttgca ccaatggaat
     2221 atcctgcagt agcgaatttt gaatgtacta atgctcttta tgcagcagca gtggaatcag
     2281 gcgttacacc ttatgtgggg attacagctt catcagacac tttctacccg gggcaagaac
     2341 gttacgacac tttcaccggc aagatctatc gtcatttcca aggttcatta aaacagtggc
     2401 aagatctcaa tgttatgaat tttgaaatgg aatccgccac tctctttacg atgtgttcgg
     2461 cattaggctt gcgagcaggt atggttgctg gtgtaattgt aaaccgcact caacaagaga
     2521 ttccgaatga agcaaccatt cacgacaccg aacataaagc cgtttcggta gtagtggaag
     2581 cggcaagaaa attaattaaa gg
//
LOCUS       DANLXB010000252         2592 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.254, whole genome shotgun sequence.
ACCESSION   DANLXB010000252 DANLXB010000000
VERSION     DANLXB010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            4..735
                     /locus_tag="PXD41_002470"
     CDS             4..735
                     /locus_tag="PXD41_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6289949.1"
                     /translation="MRPLKEIRYDNLLRLIDEAKSTSDLANRTGIAVSYLLQIKNKNA
                     IQNGKPKGIGDKIAAKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDF
                     IIIDVLDVSASAGFGSSSELVEVVNQMRYVPEQFYSLFRNMAPRYIRIINLSGDSMYP
                     TFSSGDMLFVDISVNEFTGDGVYVFTYKGHLYVKRLQNTGDQILVISDNKLYEKWSIT
                     EENQDQLFIHARVKVHQSQQLNFIG"
     gene            740..1243
                     /locus_tag="PXD41_002471"
     CDS             740..1243
                     /locus_tag="PXD41_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4365 domain-containing protein"
                     /protein_id="HDL6289950.1"
                     /translation="MLSPTQQMEQFNIAYVLAITANAGFNHAVPVVDNHSVDLAISAE
                     FPTEEGKRSDPEIKLQLKSEGDLHIKNGLVSYKLKKKNYDDLRKNCANPRYLIVCDLP
                     KKTTQWLSHKKKFMTLKRHCYWVSLKGFPATTNRSSVTLTFPENQRFTTDVLIKMIEY
                     ARVGETL"
     gene            1240..2352
                     /locus_tag="PXD41_002472"
     CDS             1240..2352
                     /locus_tag="PXD41_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289951.1"
                     /translation="MKNNKTDTLLFLEQFARYLTAKSWQIAFELEYAVIWQKDLGHRI
                     LEVTLPKPIAEDREEVLQKALEKLAKIEEKNVETLKLNISNQYTDKLSVRVIGESVKD
                     GTIPLNEGVKLFEKTKHLINALALSAKKKKAAFGHNSGGKDVAEFMSQVRLGQTQIGS
                     YIVNLSYPVENIEIKEQNEIIQAISFSRSVSHNLVNSLNKLKEKITHYDHNPTIFAEL
                     IPEGVSHNLCEAIIGLSGSDQQRKIEIKLQVGEISDESMPSETFNIKFSQKEIKVIQV
                     ASRYYQGEYTLPHYEIIGKVVGLHSSNLADGGYIQVPCKIEDKTVDIRVDLPPEQYKL
                     AAEAHKTEQQIRCKGENLYINKKKGRLQKLTSINIL"
BASE COUNT          959 a          414 c          469 g          750 t
ORIGIN      
        1 gatatgagac ccctaaaaga aattagatac gataatttat tacgcttgat agatgaggct
       61 aaaagcacat ctgatttagc taatcgaaca ggtatcgcag taagctatct actacaaatc
      121 aaaaataaaa atgctattca gaacggtaag ccaaaaggca ttggtgacaa gattgccgcc
      181 aaattagaag atgggatgaa taaacctaga ggctggttag atcaaataca ttcagagcaa
      241 tcaaacctta tcaattcaag gataggcaat gaagaacaaa aattgcagga gcaagattta
      301 aatgacttta tcataattga tgtattagat gtcagtgcta gtgcaggctt cggctcaagc
      361 agtgaattag ttgaagtagt aaatcaaatg cgttatgtgc ctgagcaatt ttattccctc
      421 tttcggaata tggcacctcg atacatcaga attatcaatt taagtggtga ttctatgtac
      481 ccgacatttt cctcgggaga tatgcttttt gttgatatta gcgtaaatga gtttaccggc
      541 gatggtgttt atgtatttac atacaaagga catttgtatg taaaaagatt acaaaataca
      601 ggcgatcaaa tattagtgat ttcagataac aaactctatg aaaagtggag tatcactgaa
      661 gaaaatcaag atcagctatt tatccatgct agagtaaaag ttcaccaaag ccaacagttg
      721 aattttattg gatagaaata tgctttcacc tacacaacaa atggaacaat ttaatattgc
      781 ttatgtgtta gctattactg ctaatgcagg ctttaatcat gcggtaccag tagtagacaa
      841 tcatagtgtt gatcttgcaa tttctgcaga atttccgact gaagaaggga aaagaagtga
      901 tccggaaata aagctacaac ttaaatcaga aggagatctt catattaaaa atggtctggt
      961 aagctataaa ctcaaaaaga aaaactatga tgatttaagg aaaaattgtg cgaaccctcg
     1021 ctacttaatt gtatgtgact tgcctaaaaa aacgactcaa tggctctcac ataagaaaaa
     1081 atttatgact ttaaaaagac attgttattg ggtatcatta aaaggctttc cggcaacaac
     1141 aaatagaagt agtgttaccc tcacatttcc agaaaatcaa cgatttacca ctgatgtact
     1201 cattaaaatg attgaatacg ctagagtagg agaaacttta tgaaaaacaa taaaacggac
     1261 acgttactgt ttctcgaaca gtttgctcgc tatttaactg ccaaaagctg gcaaattgcg
     1321 tttgaattag agtatgcggt tatttggcag aaagatcttg gacatcgaat tttagaggtt
     1381 acattaccaa agccaattgc tgaagataga gaggaagtgt tgcagaaagc acttgaaaag
     1441 ctcgccaaaa ttgaagaaaa aaacgtagaa acgttaaagc ttaatatttc aaatcaatat
     1501 acagacaagc tatctgttag agtgattggc gaaagcgtta aagatgggac aattccgcta
     1561 aacgaaggtg taaaattatt tgaaaaaacc aaacatttaa ttaatgcctt ggcactttca
     1621 gctaaaaaga aaaaggcagc ttttggacat aactcaggtg gcaaagatgt agcagagttt
     1681 atgtctcaag ttcgtttagg gcaaactcaa attggaagct atattgtcaa tttatcttat
     1741 cctgttgaga atattgaaat taaggaacag aatgaaatta ttcaggcaat ttcattttct
     1801 cggagtgtat cgcataattt ggttaacagc ctgaacaagc tgaaagaaaa aattactcat
     1861 tatgatcaca atccgactat ttttgctgaa ttgatacctg aaggagtaag tcataatctt
     1921 tgtgaagcta ttattggatt aagtggttca gaccaacaaa gaaaaatcga aattaaactc
     1981 caagtgggtg aaattagtga tgaatcaatg ccttctgaaa catttaatat taaattttct
     2041 caaaaagaaa ttaaagtaat tcaggttgca tctaggtatt accaaggaga atataccctc
     2101 ccacactatg aaatcattgg caaagttgta gggttacact ccagcaattt agctgatgga
     2161 ggttatattc aggtaccttg taaaatagaa gataaaacgg ttgacattag ggttgacctt
     2221 cctcctgagc agtacaaatt ggcagctgaa gcacacaaaa ccgaacagca aattcgatgt
     2281 aaaggagaaa acctatatat caataagaaa aaaggtcggc tacaaaaatt aacctcaata
     2341 aatatcttat agacaaaccg ccctcgtggc ggttttcttt tgcctaaaat ctgcaaaatc
     2401 ccaattcaaa atgaccattt gcacttctta cctgtttatt tattaagcag ttaaaccgcc
     2461 ctccaaaatt ttattttctt ttaaattcaa atagataaca ataaacgata ataaatttat
     2521 tatcttttag ttaaattgtt attgttgtct ttttatcttt aagataatat aagcacatca
     2581 aaacaaacaa cg
//
LOCUS       DANLXB010000253         2571 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.255, whole genome shotgun sequence.
ACCESSION   DANLXB010000253 DANLXB010000000
VERSION     DANLXB010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..395)
                     /locus_tag="PXD41_002473"
     CDS             complement(<1..395)
                     /locus_tag="PXD41_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6289952.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQR"
     gene            complement(499..963)
                     /locus_tag="PXD41_002474"
     CDS             complement(499..963)
                     /locus_tag="PXD41_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL6289953.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            1172..1435
                     /locus_tag="PXD41_002475"
     CDS             1172..1435
                     /locus_tag="PXD41_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL6289954.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(1519..2544)
                     /locus_tag="PXD41_002476"
     CDS             complement(1519..2544)
                     /locus_tag="PXD41_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6289955.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT          706 a          580 c          494 g          791 t
ORIGIN      
        1 tctcgttgct ttgattgttc ttcgggagct acattcgggg gcaaaatata gctttgacga
       61 actttagctg aaaaagcaat aacttctaaa ccgtgatcaa gcattccacc gatatgtgaa
      121 tgatggtgtg attcagaagc tggtaatagt tgaaccatct cagcgtaacg ttctattggc
      181 tgctgataaa gtacctcaaa catttgacgg ttcattgata cctgttgcca aagtagccca
      241 agatattttt gtcgtaattc tgtattaagt aattgagagg ctttttccgg gtataaccac
      301 ccttcattat cttgctcaat agaaaaaata gtatcggatt tgaccgcact ttgagattta
      361 tttttaccaa aaaatttttt gaacattgaa cgcattggaa gagaccgaaa atatgaatgc
      421 tgtattgaat gaaagccgtt tagccctttg cccttttggg taagaccttt ccccttggaa
      481 aggttactct tatccccctt aggggattac aggatcgtac agttccgccg gtaaattttc
      541 acactggtct aaattgaaca gattgtgctt agcaatgaaa aagtgttgtt ccatttccgg
      601 atttccttcc tcgtcataca caatatttcc ctcctcatcg agtttttctc tctcattagg
      661 acggtagttc atcacaacag tagctttttc ccctttacgg atatatccgc cgagttcatt
      721 ggcttttttc gccgtaatcc acttacactg tttgtagccg tgttcagcgg tagcaatcca
      781 aagcaataac gtattgatac cggaatacag acggttagaa accgcattgc gaggtaatgc
      841 catattgcat tccggatggc tccacggttt taaccacgga gctgtacctt gttccaatgc
      901 agcaatgatt ctatcagtaa tatgttggta taaatcaaat ttaggttgtt gagtgttcat
      961 catgtgtttc tccaaagttt gggtaaaaaa atggggaaac acggttaccc tatggggaac
     1021 ttgtttcccc gatgggtagt ttataaaatt tcaatggcca caatttttct agaatcatca
     1081 aagccaacag aactgcctat ggcgtagtaa ttacgaatag tctgttcatc ggcattgatt
     1141 agcagatacc tatcgaggaa gagagattgg gatgagaccg gtaacgagaa ataatcgtgg
     1201 aaccagtttt gaccctcgtc acaataaata catcaataca ttggcaaccg cattattggc
     1261 acgttggcat attgagcaat tctctgagcg taatatccca gtcaatgatg aaaatctcta
     1321 tatggctcac aatattggct tagatggttt ccatcgagcg ttattagggc aatctactcg
     1381 taaagacatt gagaatatgc gtaagaatgg gatgaaacct tggatgtcca tttagctctg
     1441 ttttcaaatg acctaatcca gtttgttccg gagagagtac cgaaattttg cactctttca
     1501 tccgtggtgt atcaaacttc aacgtgctaa atgagacatt aaatatacat caacataatc
     1561 taccgcactc atcgttaaga aaccgggatt cccatcagaa tgaggaatat cgttaaagcc
     1621 cgataaggag acggttaaac aaaatggtgt taaattactt gcttgatttc gtttcacagc
     1681 tctgctttct ccactcgctc gcccattcga aatacgaccg tctgcaaaca caaaggtaat
     1741 gctcgttacc tcagaacgaa cgcaagatag cgtccaatct ccggttgatg taccggatac
     1801 aatcgccccc tcaacatcag gtaaatcaat gccattggca attaaatttt ctcgcccgat
     1861 taatacttta aacggaaacg gatctgtcac agcaccttga ataggtacac ggcctaacaa
     1921 tgccgtcatc gcagtagaac ccattaaagt cgaattttcg ggaatagtgt aataaggtgt
     1981 acgctttatt tgctgtatct gagtattacc agtcatattt tctgtcccag cattattatt
     2041 taatgctgtc ccagtatttg aactttcccc ctctgcttta aaagggcttg gaaagccggt
     2101 ttttgttttc ccggaataat tgcctgtaac cggtttacct tgttcatcgg ttaccaccat
     2161 atcatcagga tcgacccagc gaatgccatt gttatctaca ttccctgttt gtcctgctga
     2221 ttcagtccca aagccagaag aagcccctcc tacagggatt gcctctgctt ctttctgctg
     2281 ctgattacca ctttgaaccc gacctttcag ttcttcgatt tggcgattaa atccatccca
     2341 agcagcagcc aaacggcttt ctacacgact ttctacttca cccgcaatac gagaatccac
     2401 ttcggcttct cttgcttgta agcgtaatac ctcttgctca aagcgatcac cacgctcatt
     2461 tgctttacga gcttcttcac gagtatcttt taatgctcct accaacgttt ttaatgtatc
     2521 gtgaggcgta tctcctgcag taatacctaa tgtattcgcc tcctcatcac t
//
LOCUS       DANLXB010000254         2541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.256, whole genome shotgun sequence.
ACCESSION   DANLXB010000254 DANLXB010000000
VERSION     DANLXB010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            79..2466
                     /locus_tag="PXD41_002477"
     CDS             79..2466
                     /locus_tag="PXD41_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL6289956.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
BASE COUNT          832 a          446 c          490 g          773 t
ORIGIN      
        1 atctggtatt ttatacataa gattgaacca tataatagct gttcagctaa aaattagtct
       61 ttgcacttta tccccctaat ggagaaaatg atgagaaaaa tcaatcagtt aatcatatcc
      121 ccatactttt tcctaagtat tttatctgct tccgctaact ctgatttttg gaaaagcgac
      181 cttaatttta atctcacaaa tattaccaag cgtgtcggag tcgataactt taccactcca
      241 gtagctggcg agccttgggc tggtattggt ccaaatggtg aagctgcagg tactgcgcca
      301 ttatattata gccgtattcc agctatgcaa gttaccgaag ataacaaatt agttgttatg
      361 tttgatttac gctggaatcg tgcgtatgac caagatcgta ttgatcctgg tattgcgatt
      421 tcttccgatg gtggccatac ttggacgaag aaaaccgctt ggtcttttga tagaactaat
      481 cacccagcac gccgttcaat ggatccaacg ctattacata atcctattga taatagttta
      541 tatgtaatgc acggaacttg gtctatgtcg gatcaacaat ggtatggtgg gcgtgttcct
      601 cactttaata gtggcagctg ggcagctacc atttataaat ctactgatgg tggtttaaat
      661 tgggagaaaa atactgagtt tagtaaattc agcaatttag acgtattttc taaagtcacc
      721 aaaaatggaa aacctacctt aggcttttta ggcggggtcg gatctggaat tgtaatgcaa
      781 gatggtacgt tggttttccc aattcaaacc gcacatcaaa atggtattgc gaccactatt
      841 atgtattcta aggataatgg gaaaacttgg gaaatgccag aaattgacaa cccagttgca
      901 ccgaaccaaa gttctttaga aaatatggtg tttgaactcg aaccgggtaa gctagtgatg
      961 actggacgag gaaacagtcg ctgggcatac tcttctactg atatgggtaa gacctgggaa
     1021 ttatttactc caactaatgg attattacca actagctcac aaccaactca aggctcttct
     1081 atctatgtaa cactaccaaa tggtcgaaaa gtgctactaa tctctaaacc agatggaaag
     1141 aatgatgggt ggaaaagggg tgatattaca ctttggatgc tagatgcaaa agatccatcg
     1201 cacaaacaca aggtgcatat tattcgtcca ggttcaggta atgccgctgg tgctggttat
     1261 tcctctttag cctataaaga agggaattta tttgttgctt ttgaaaacga tggtgatatt
     1321 tcagtaaaaa atttaactga acatattgct gaaatggaag caaaagctat cgaatgggga
     1381 ttaccagatg aacttactcc tgctttggat aaaatcaatg cactgcctta tctcaataaa
     1441 gctcaaaaag agacgctagt cgaaaaaatg cgtcgtgcta atgatactgc gattgcacaa
     1501 tcttttgtga ttaacaaaga aatgtataat ctgaaaaaca atagtgatga gctggataaa
     1561 ttggcaaaaa atattactaa agcactgccg tctcaacaga atatttatca aagagcctta
     1621 gcctatgtga ataaagtcac caatacagcg gataccactt atttaaatta taatggtatt
     1681 atggatacct atgctaattt atatgaaagc tatttggctt taaatactaa attagacttc
     1741 actcgctaca tccaaaaagc gagaaagttc aatgaatata acactgatat tttatatcgt
     1801 agctttgata atttctttgc ccattacgac acaggtgtaa aacacaataa tctatcctta
     1861 ggcttgaata caaaattaag tgagaattta cgtggtggct tattctttga atacagtaat
     1921 aaaaatcgta atagcgtaca aattggtgca agagctaaat atgaaatgga taatcaccaa
     1981 ctttctggct tcttacgcta tcgtggcgta aaacataaag atatgctagc acgtaataac
     2041 agtgttgatg gctacctaaa ttatgcttat cgtattcaat tagatgataa attaagcatt
     2101 agcccatcag ttggtgctta cgtttcacgt tcttctcgct cattaataga tgaagatctt
     2161 gcgattaata gccgcacggt ctatgcaagt gatgtaggat tgaatatcca ttataagcta
     2221 aatgatattg atgcttatat tcgtccaagt ataggctttg tcaatggtga tataacttta
     2281 tctcaatcta atgatatgac aaacacatac aaaataaagg ataaaagtaa cgtgtattct
     2341 gtcacgacag ggttgaaaaa acgctttgca aatggtgtgg cattaggggc tgatttcaaa
     2401 ttacatcgtt atggttctca aactactgaa agtaatttcg gtctaaatgt aagttataac
     2461 tggtaatacc gtaaactgat tacgatttaa aagttagact agcccaagac tgagttctat
     2521 attccataga gctcagtctt t
//
LOCUS       DANLXB010000255         2530 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.257, whole genome shotgun sequence.
ACCESSION   DANLXB010000255 DANLXB010000000
VERSION     DANLXB010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            20..1135
                     /gene="wecB"
                     /locus_tag="PXD41_002478"
     CDS             20..1135
                     /gene="wecB"
                     /locus_tag="PXD41_002478"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL6289957.1"
                     /translation="MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQ
                     VLELFEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASS
                     LAAYYNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENI
                     AEGTIYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGN
                     GFENICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVY
                     LMRESYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQV
                     TELLNDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
     gene            1150..2421
                     /gene="wecC"
                     /locus_tag="PXD41_002479"
     CDS             1150..2421
                     /gene="wecC"
                     /locus_tag="PXD41_002479"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6289958.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
BASE COUNT          817 a          488 c          495 g          730 t
ORIGIN      
        1 atttttaaag gagtaataaa tgcgctatct catcgtcttc ggtactcgtc ctgaggcaat
       61 caaaatggct cccttagttg agggctttaa gaaaagcggt ctaaatttta aagtctgtgt
      121 tactgctcag caccgccaaa tgctggacca agttttagaa ttattcgaaa ttactccaga
      181 ttatgacctg gatattatga gcaataagca aacactttct actgtaactt ctgctatttt
      241 agaaaaaatt caacctgtta ttgccgaata caaaccaact actatttttg ttcatggcga
      301 tacagcaacc actcttgcct cttcattagc agcctattac aaccaaattg atatcgctca
      361 tattgaggca ggtctaagaa cgcataatat ctactctcct tggccggaag aaggcaatcg
      421 caaattaaca gctgctttgg caaaatacca tttcgcacca acacaaagca ccaagaaaaa
      481 tctactcaac gaaaatattg ctgagggcac catttatgta acgggtaata cggtaattga
      541 tgccttattc ctcgcttgca aaaaattaga tgaaaatatt gatttattaa gctcgctaca
      601 agagaaattt tcttatataa aaagtaagcg tactattttg atcaccggac atcgccgcga
      661 aaatttcggt aatggttttg agaacatctg taaagccgtt tcaacattag cgtctgattt
      721 ccctgacgtt caatttatct accccgtaca cctcaaccca aatgtaagag aaccggtcaa
      781 tcgcctatta gcggataaat ccaatgtgca tctcattgag ccttgcgact atctctcctt
      841 tgtttattta atgagagagt cttaccttat cttaactgac tccggaggta ttcaagaaga
      901 agccccatca ttaggaaaac cggtattagt aatgagagac acaacagaaa gaccggaagc
      961 tgtagaagcc ggaacagtaa aacttgttgg aactgcacaa tctgaaatta ttaaacaagt
     1021 tactgagtta ctcaatgatc aagctgctta tacaaaaatg tctgaggctc acaaccctta
     1081 tggcgatggc acagctgtga aacaaattct ctcagtattt caatcaaaac aataataagg
     1141 gataaatgta tgtcgaactt taataccatt tcagtagtag gcttaggcta tattggctta
     1201 ccaaccgcca ctgtatttgc ccaacacggt ctaaatgtaa ttggcgtaga tgttaatcag
     1261 cacgccgtag accatatcaa tcaagggaaa attcacattg tcgagcctga tttagatgtt
     1321 gctgttcacc aatgtgtatc tagcggaaaa ttaaaagcca cactgacacc tgaaccagca
     1381 gaagcatttt taattgctgt accaacgcct tttaaaggcg aggattatga gcctgattta
     1441 agttatattc aagctgcttg caaagcaatt gcacctgtgc tggaaaaagg taatttagtc
     1501 attttagaat caacctctcc ggttggtgca acagaacaga tggctgagtg gcttgccgag
     1561 taccgtccag agctaagctt ccctcagcaa gcaggtgaag attctgatat tcgtatcgcc
     1621 cattgcccag aacgagttct accaggacaa gtgatgcatg aattgattga aaacgaccgt
     1681 attgtgggtg gtatgacaaa taaatgctct gtgcaagcgg tcaatttata caaaactttt
     1741 gtaaaaggcg actgtatagt taccaatgcc cgtaccgcag aaatgtgtaa attaaccgaa
     1801 aatagtttcc gtgatgtcaa tatcgctttt gcaaatgagc tttctattat ttgtgatcgc
     1861 ctagatatta atgtatggga actaattgct ttggctaaca gacaccctcg agtcaatatc
     1921 ttacaaccgg gttgtggtgt aggtggacac tgcattgctg tagatccttg gtttattgtg
     1981 aataaaactc ctgacttggc aaaaattatc cgcactgctc gtgaggtaaa cgatcataaa
     2041 cctgaatggg ttatctcaaa gatgaatgaa gcggtaattt atgccttaca aaaaacaggt
     2101 aaatctatcg atcaaatcaa aattgcttgt ttagggttgg cattcaagcc tgatattgac
     2161 gatttgcgtg aaagtccggc attaaaaatt actgaaaaat tggcggaaaa gtatccaaat
     2221 caagtatttg cagttgagcc gaatgttgaa gagctaccga aaaaattggc taacaagaac
     2281 atttctttga tttctgttga tgaagctctg gaagtagctg atgttgtagt tgttttggtg
     2341 gatcatagcg aatttaaact agtcaaacct gtgtttttga atgatatttg tgtggtggat
     2401 actaaaggaa tttggagata agtgatgaaa aagaaacagc aatatcgtaa atccactatt
     2461 aacaatacta atgcatcaca acaaaattca ggcgaagtat taaattctgt caattatcaa
     2521 acattactgg
//
LOCUS       DANLXB010000256         2509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.258, whole genome shotgun sequence.
ACCESSION   DANLXB010000256 DANLXB010000000
VERSION     DANLXB010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(61..237)
                     /locus_tag="PXD41_002480"
     CDS             complement(61..237)
                     /locus_tag="PXD41_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289959.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            complement(491..1192)
                     /locus_tag="PXD41_002481"
     CDS             complement(491..1192)
                     /locus_tag="PXD41_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289960.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            1737..1952
                     /locus_tag="PXD41_002482"
     CDS             1737..1952
                     /locus_tag="PXD41_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289961.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            complement(2004..2222)
                     /locus_tag="PXD41_002483"
                     /pseudo
     CDS             complement(2004..2222)
                     /locus_tag="PXD41_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
BASE COUNT          682 a          473 c          566 g          788 t
ORIGIN      
        1 gttagctaca agcggttggt tgtcaagtgt tcatttgttc aatgaacagt tcatcagtgg
       61 ttaatcttca atatcaatat attccgctaa ctcacttcga gcttttaaat aagccttgcg
      121 aagcccgtgg aatttttcat cttggacttc ttcaaagtca ctataactga cgaaagcgta
      181 ttcaaaacct tcgttttcaa ttttagtttg aagatattct ttgtcttctt ctgtcatttc
      241 gtttctccta ttgagagtgg ataaaaataa acactgcacg ggcagggtcg gggaagcatt
      301 atcgctgtgc gatagtgcat ggtttgccat cgcagtcgtt gtgtaactct aagtagtcgg
      361 cagcaactgc aaaggcggtt aaaaagagta tgatttttgc gtatttcatc gcctaatcct
      421 tgaattttgg gtgcaggaaa ccgccgcttg atgtttcaca agcggtcgga ttgtgtgatt
      481 tttttgcaaa ttaaattcgg actaagccgc ctaagccttt cggctggtat tgccttaagg
      541 tagttagggc tttgtggtag tgagcttctt caaacggatc gacctcgaag tcggctaaca
      601 tcggttcaag tatccgtttc attacgccaa gcgtggtttg atactcggtg gcgtgagtgt
      661 aggcggttgc cccaaacggc gaaccgatag cacgcaacgg tttttctaac gtagcaagta
      721 cttcaaggct gttgtagagg gcgtaccaca ttgaagcgaa acgtagccat tcttttttgg
      781 ttagctccat tgggatttta ggttcgacaa tcggggcgat ttgtgaacgt tccgctttgc
      841 ccttgaacca gtaatcgtgc agggcttggt agcactcttt tttgtatttg atgagcgttt
      901 ctctgatttc gggtttgcag cgattgatgt caatgccgaa gagccagccg ttgaggtatt
      961 caattgggag gcagatcatt tgttgatcgc caccgtttgt aggtattctt atgataagaa
     1021 taccctgcga aaggatttca tctcgtttga tccgttcgta ttgagcgtgc caagtcaagc
     1081 cgatattttc gcagatcggt ttcattgcgg tgtaatgtgt gccgttttgc tcgaatgtga
     1141 ttaaggcttg gttgttgaaa gaaatggttt gagtagaaat ttgagttgac atagtcgtaa
     1201 tccttagagt ctatttgttt aaaacaagcc actttcgaca gtggcgtcgg gaggttcgaa
     1261 aacccactct aaggtaaggg ctggacgtat ttcctttcgg tcttgtatta gtcgccctcc
     1321 cgacatagtc aggattacgg atataaaaaa atcgcctagt ggcgattagt gaactatccg
     1381 ccttagagta tgaggtttcg acaccttggg cggaatagta agttaaagtt tggcggttgt
     1441 caaataaaat tattttaata aatactaaaa aatagcttgc gttttatttg gtatgtatta
     1501 aaataatctt gttttcggaa agggtctgaa aatgaagaag ccgcccttga agagagcggc
     1561 aaacatcagg aactggatta tgtatcttaa gttgttaatc ctagtgatct taatcttaat
     1621 aagcacgcca gcttattaga ttagaaagct aaaagtccta gcagagaacg ccatctctgc
     1681 taggcagttc ctaaataata taacgttccg tattaaaaat caacaaggaa ttgacaatgc
     1741 aaacagagaa acgaggtcgt ggtcgcccta aatcaggttt aacgcttcaa gaattacaag
     1801 caaaaagcga tgcaaagcgt ggtgtgcgat tgaagtcatt caagttccac gaagatttta
     1861 ttgctcaact tgaacagctt gcagaacaac acggcatttc gcaaacacag gtaatcgttc
     1921 aagcggttga gcagttttca aaaggggcgt aagcccctat aaacctaccc ttcactgttc
     1981 gatgttttta attagttgtt gcatttaatt tggtgtaatt ccaccaaatt aaaatttgga
     2041 ttattcagct cttcccaaac ttgaagaaat tcaatggtat ttttattttg aagccagttt
     2101 ttaatgagct ggtcgctgtc tccaaaagct ttgcacatat cagttaggct gatgtaatcc
     2161 tcaccatcac gagcggttac tttgacctcc acgccttgta caatcattac gctatttgcc
     2221 atttcgtttc tccgttttta ggtacaaaaa aagccgttgg tggacggctt gaaagtgcgg
     2281 ttatcttaat ccgaagtttg gcggtgtcaa gcctcaatat ctatttttgc gatctgcatc
     2341 gaaaaaataa atttttgttc tgacagtaaa acgctttcgt agtaatctca taaaaaaata
     2401 taaggagaac actatgaaag agcttttcaa acaatggcta atcaatcagg actcgccatt
     2461 cattaatagc tgtggcgttg agtgtatttt gtcaaaagtt gatgaccgg
//
LOCUS       DANLXB010000257         2501 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.259, whole genome shotgun sequence.
ACCESSION   DANLXB010000257 DANLXB010000000
VERSION     DANLXB010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            37..327
                     /locus_tag="PXD41_002484"
     CDS             37..327
                     /locus_tag="PXD41_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL6289962.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            396..2036
                     /gene="groL"
                     /locus_tag="PXD41_002485"
     CDS             396..2036
                     /gene="groL"
                     /locus_tag="PXD41_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL6289963.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2161..2487)
                     /locus_tag="PXD41_002486"
     CDS             complement(2161..2487)
                     /locus_tag="PXD41_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL6289964.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT          791 a          411 c          605 g          694 t
ORIGIN      
        1 gttttattta ttcattttta agaaaaggaa catattatgg cacttcgtcc attacacgat
       61 aaagttattt taaaacgtga agaagttgaa acaaaatcgg caggcggtat tgttttaacc
      121 ggttcggcag caacaaaatc aacccgtggc aaagtaattg cagtaggaac aggtcgcatt
      181 ttagacaatg gttctgttca gcctttagca gttaaagtgg gcgatgtagt gatttttaac
      241 gaaggctacg gcgtaaaaac cgagaaaatt gacggcgaag aagtgctaat tttagcagag
      301 cacgatattt tggcgattgt agaataattt cgttctgcac aagcggttaa aaaagcaaaa
      361 ttttttacat atttcaaata caaaggattt agaaaatggc agcaaaagac gtgaaatttg
      421 gtaacgatgc acgcgtaaaa atgttaaaag gcgtgaatat tttagccgat gcggtaaaag
      481 taactttagg tccgaaaggt cgtaatgtgg tgttagatcg tgcttatggt gcaccaacga
      541 ttacaaaaga cggtgtgtcg gttgcccgtg aaatcgaatt agaagataaa tttgaaaata
      601 tgggggctca aatggtgaaa gaggttgcct ctaaagccaa tgatgccgcc ggtgacggta
      661 caactaccgc aactgtatta gctcaagcga ttgtaaacga gggcttaaaa gcagtggctg
      721 cgggtatgaa cccaatggat ttaaaacgtg gtatcgataa agcggttgca gcagtggttg
      781 aagagttaaa agcgatttca aaaccgtgcg aaacctcaaa agaaattgag caagtaggga
      841 cgatttctgc aaactcagat tcaacagtcg gtcaattaat tgctcaagca atggaaaaag
      901 tgggcaaaga gggcgtgatt actgttgaag acggtacagg tttagaagat gcattagacg
      961 tggttgaggg tatgcaattt gaccgtggtt acttatcgcc atactttatc aataaaccgg
     1021 aagccggtac ggttgagtta gaaaacccat atattctttt agtggataaa aaagtgtcta
     1081 acattcgtga attattaccg gtgttagaag gtgttgcaaa agcaggtaaa ccgttattaa
     1141 ttattgccga agatattgaa ggcgaggcgt tagctacctt agtggtgaac actatgcgtg
     1201 gtatcgtgaa agtggcggca gtgaaagcac ctggctttgg tgatcgccgt aaagcaatgt
     1261 tacaagatat tgcgatctta actgcaggta ctgtgatttc tgaagagatc ggtatggagc
     1321 ttgaaaaagc aacccttgaa gagcttggtc aagcaaaacg tgtggttatc agcaaagata
     1381 acaccacaat tattgacggt attggtgatg aaactcaaat caaaggtcgt gtagcacaaa
     1441 tccgccaaca aatcgaagat tcaacttcag attacgacaa agaaaaacta caagagcgtg
     1501 tagcaaaatt agccggtggt gttgcggtaa ttaaagtagg tgcggcaact gaagtggcta
     1561 tgaaagagaa aaaagaccgt gttgatgatg ctcttcacgc aacccgtgct gcggtggaag
     1621 aaggtattgt accggggggc ggagttgctt tagtgcgtgc agccaacaaa gtggctgata
     1681 cactaaaagg cgataacgaa gagcaaaatg taggtatcaa acttgccttg cgtgcaatgg
     1741 aggctccatt acgccaaatc gttgccaatg caggtgaaga agcctcagtt gtagcccgca
     1801 acgtgaaaga aggttcaggc aactacggct ataacgcagg tacagagcag tacggcgata
     1861 tgcttgaaat gggaatttta gacccaacta aagtgactcg ttcagcactt caattcgcgg
     1921 cttctattgc aggtttaatg atcactacag aatgtatgat taccgatctg ccaaaagaag
     1981 agaaattaga tcctgccgca atgggcggta tggggggaat gggcggaatg atgtaattgc
     2041 ccattgagtg aacaaaagct actgaaatta attcagtagc ttttttgttg gtaacaagtg
     2101 gttaaattta tgctattttt tgcaaataaa aaaccaagca agtaagcttg gttttagcgt
     2161 ttattgatgt ttttgtttaa ggctgtttag tgctgttaaa cctttctcac aacttttttg
     2221 ctgtaattca gaatccattt ttaggatttg ttgctttgtt aaagaaagtt tatttttcat
     2281 ttttagcact tgagtatgag taccaggctg tctttctgca tcagagacca atttatttgc
     2341 cgtgttaaac attttctcac attcagttgg caaattttta cttaaagtag gttttgcaac
     2401 tgtaagtgat gaggttttaa cacttgctat agcattactg gaaaccaata tggtacaaag
     2461 tgttattcct aaaattcttt ttagcatgcg ttctccacac a
//
LOCUS       DANLXB010000258         2471 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.260, whole genome shotgun sequence.
ACCESSION   DANLXB010000258 DANLXB010000000
VERSION     DANLXB010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            101..1393
                     /locus_tag="PXD41_002487"
     CDS             101..1393
                     /locus_tag="PXD41_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6289965.1"
                     /translation="MEKSVPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYR
                     DFTHIDPVLLRYAQGKIALLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQL
                     NQAQAQFEKAKSAEHLPPKVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQP
                     NIEQTGYVKQPNLLPQTAHGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDE
                     ITNRTLFGYAYKKSDQTTRLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATAL
                     EYGKKRYFDLPIYNGSYKLASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIR
                     FGWQREWQALELSSRLTLGYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWH
                     WLGLMPKLQFSYAKHRSNLPSLYAYTDKNINLIIESRF"
     gene            complement(1643..1966)
                     /locus_tag="PXD41_002488"
     CDS             complement(1643..1966)
                     /locus_tag="PXD41_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL6289966.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(1935..2462)
                     /locus_tag="PXD41_002489"
     CDS             complement(1935..2462)
                     /locus_tag="PXD41_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL6289967.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
BASE COUNT          715 a          591 c          439 g          726 t
ORIGIN      
        1 ggcacttttc ccaatgatgt tatttgcccg agatcctaat actacacagg cttatattga
       61 gcatactgca cagccaacta caacccccca aagggtcaag atcgaaaaat cagtgcctat
      121 ttttaacgaa actgaattac gtgctaatca attattgacc gaaaagctac ttatccaagc
      181 tatttatagt cgtaggcttg ctaacatgga aaaattaact gcgatttatc gggattttac
      241 ccacattgac ccggttttac tgcgttatgc acaaggtaaa attgccctac tgaaaggcga
      301 ttacgcacag gcaattcagc acttccaaac cattcttgcc aaacaaccca aactaaacac
      361 tgtaagaatt gagctggcga ttgctctatt gtacgatcag caacttaatc aagcccaagc
      421 acaatttgaa aaagccaaaa gtgccgaaca tctaccgcct aaagttcacg cattaattga
      481 gcaatatcag caacatctgg caaaaaaaca ggaatggaaa tttagttttt cagccaatta
      541 tgtgcgagac ggcaacatta accgaacctc gaaacagccg aacattgagc aaaccggcta
      601 tgtaaaacaa cctaatttgt tgccccaaac cgcacatggt gttcactatg cgtttggatt
      661 acagagagat ttcaacctgt tcgactcaca ctatgtgagt tttgacaacc aaacccaagg
      721 tgaactttat tgggataacc acgattatga tgaaattacc aatcgcacct tgtttggata
      781 cgcttacaaa aaatccgacc aaaccacccg cttgttaccg ttttatgaaa aacgctggaa
      841 acatcaccgt tcggaacgct ggacaaacgg aattcgactt gaacacgcac aatggttttc
      901 accgcattgg caactcgcca ccgcattgga atacggcaaa aaacgttatt ttgatttgcc
      961 gatttataac ggcagctaca aacttgcctc tgccacattg ctttggttac gcaatccaca
     1021 acaatttttc tttgtcggca ctgatttcaa tcaagacaaa actcagttaa aacaatatag
     1081 ctctgatact aaaggcatac gctttggctg gcaacgagaa tggcaagccc tcgagctttc
     1141 cagtcgcctc acgcttggct atactgacag acgttacaaa gacaccgcta tattgggagg
     1201 aaaacttaat cttggcagaa tccgccatga ccgtgtgcaa agtgctaacc tcacgctttg
     1261 gaaacgagat tggcactggc tcggcctgat gccgaagctg caatttagtt acgccaaaca
     1321 ccgtagcaac ctgccgagcc tctatgccta caccgataaa aacatcaatt taattattga
     1381 aagtcggttc tagctccata aaaacaacaa gcggttaaaa ttcctagaaa ttttgcaaat
     1441 tgcaaaaaat gtagaaaatt taaccgcttg tatctatact gcagcttctt ttccttcagt
     1501 ataaattaat atacaccgtt gcaacaataa tggctgctcc ctgtcatcac cttgaactga
     1561 aaattgctca aggtggatat gactatcgca gccgcttcca ccgcacccag taatgtatgg
     1621 gcaagcaggt tggcttgggt atctactttt taatttgttc gttgagatat ggcgaagcta
     1681 agcctactgc tgcttgtcct gaatctttcg ccgctaaacc ttgtaaggct gccgtcaccg
     1741 catccaccgc acgcttggtt ttgctgcccg tgccgtaggc gttatcaaaa gtctgctgtt
     1801 tatcgtttaa atcccgtttt aattggagat attcaggatg ttgagcgatt tcttcttttg
     1861 tttttccctc atttctcaaa cgggtttcca ctttgcccaa ttccagcttc gcttccgtca
     1921 ctttttcacg ctcactatgc gtgtaaatct gataagcctt ctgcaatctc gcctatgccc
     1981 ttcaccagct cctgtgtttc tttcacctca ctaatatcgt gttctattaa ctctatctct
     2041 ttaggaactg ctccaatcat agacaatgga ataacttgat ctttattttc aatattcgga
     2101 tctgcccccg catttaataa tgctatcgct gcatcaacat tctttgccct cattgcataa
     2161 tgtaaagggg tcattccgta gcaatcttgg gcattaacat ctaccccatg tttaatgtaa
     2221 aattcgacta cagaaagagg agatggtgaa taactattta agttacacat atgtagccag
     2281 ttccattttt cttttggtgt gctatccgta atagtcagtt caccttttac gaaaaatgtt
     2341 tcttgtaaaa gatcgagatc gccttctgag tttgctgcaa taactcttaa ttcaggatct
     2401 tgatcatata attcttgata acgttctaat gtctgctgac gttctttatt cttatctctc
     2461 attttacttt c
//
LOCUS       DANLXB010000259         2338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.261, whole genome shotgun sequence.
ACCESSION   DANLXB010000259 DANLXB010000000
VERSION     DANLXB010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1783)
                     /locus_tag="PXD41_002490"
     rRNA            complement(<1..1783)
                     /locus_tag="PXD41_002490"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(2100..2175)
                     /locus_tag="PXD41_002491"
     tRNA            complement(2100..2175)
                     /locus_tag="PXD41_002491"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2140..2142),aa:Ala,seq:tgc)
     gene            complement(2232..2308)
                     /locus_tag="PXD41_002492"
     tRNA            complement(2232..2308)
                     /locus_tag="PXD41_002492"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2272..2274),aa:Ile,seq:gat)
BASE COUNT          522 a          659 c          440 g          717 t
ORIGIN      
        1 ttaataaaca gttgcagcca gctggtatct tcgaccggtt caaccttcat ccgcaaggga
       61 ctacaatcta cgccggcgca ccttctcccg aagttacggt gctattttgc ctagttcctt
      121 cacccgagtt ctctcaagcg cctgagtatt ctctacctga ccacctgtgt cggtttatag
      181 tacggtttat aataacctga agcttagtgg cttttcctgg aagcgtggta tcgattactt
      241 catctccgta gagactcgtc atcacttctc ggtgttaagg aagaccggat ttgcctaatc
      301 ttcccaccta ccggcttaaa cagacatcca acagtctgct aacctaacct tctccgtccc
      361 cacatcgcag ttattacaag tacgggaata ttaacccgtt tcccatcgac tacgcttttc
      421 agcctcgcct taggggccga ctcaccctgc cccgattaac gttggacagg aacccttggt
      481 cttccggcga acgagttttt cactcgtttt atcgttactt atgtcagcat tcgcacttgt
      541 gatatctcca gcagacttct caatccacct tcatcgactt acacaacgct cccctaccca
      601 acagactttc gtctgatgcc gcagcttcgg tgctatattt gagccccgtt acatcttccg
      661 cgcaggccga ctcgactagt gagctattac gctttcttta aatggtggct gcttctaagc
      721 caacatccta gctgtctaag ccttcccact tcgtttccca cttaatatag actttgggac
      781 cttagctggc ggtctgggtt gtttccctct ccacgatgga cgttagcacc caccgtgtgt
      841 ctcctgagta tcactcttcg gtattcgcag tttgcatcgg gttggtaatc cgggatggac
      901 ccctagccga aacagtgctc tacccccgaa ggtgtccgct caaggctcta cctaaataga
      961 tttcggggag aaccagctat ctcccggttt gattggcctt tcacccccag ccacaagtca
     1021 tccgctaatt tttcaacatt agtcggttcg gtcctccagt tagtgttacc caaccttcaa
     1081 cctgcccatg gctagatcac cgggtttcgg gtctatacct tgcaactaca cgcccagtta
     1141 agactcggtt tccctacggc tcccttattc agttaacctt gctacaaaat ataagtcgct
     1201 gacccattat acaaaaggta cgcagtcaca agattactct tgctcccact gcttgtacgc
     1261 acaaggtttc aggttctatt tcactcccct cgccggggtt cttttcacct ttccttcaca
     1321 gtactggttc actatcggtc aatcaggagt atttagcctt ggaggatggt ccccccatct
     1381 tcaaacagga tatcacgtgt cccgccctac ttgttgttag cctagtacca caatggagtt
     1441 ttaaggtacg ggattatcac cctctacgat tgtccttccc agaacattcc cctaacttta
     1501 ctgctatcac taactggctc tttcgcgttc gctcgccgct actaacgaaa tctcggttga
     1561 tttcttttcc tcggggtact tagatgtttc agttctcccg gtttgcctca cacagctatg
     1621 tattcactgg gtgatagtag gttcttcacc tactgggttt ccccattcgg acatcttgga
     1681 ttaaacgcct cttatcgact catccaagct tttcgcagat tggcacgtcc ttcttcgcct
     1741 ctgattgcca aggcatccac cttgtgcgct tagtcactta actatacaac ctcaaatgtt
     1801 ttctaaaact tctcaaaaat aaaagtaaaa aaacaatgaa gtcagtttta caactaaaca
     1861 cttgactgct tttgttcagt caagattttt tctactcaga ctttcaattt attcgttatc
     1921 acttatgtat aattacttat gcgtaacgaa cttgaaatat ctctcagttt ttcagcttgt
     1981 ttccatattg ttaaagaaca aagataatgg ctttcgccta tcatcatacc taaaattgca
     2041 aataatccgg tatttttaac cgcttgtaat cttaggtatg atgataaagt cacgatgatt
     2101 ggtggagata agcgggatcg aaccgctgac ctcctgcgtg caaggcaggc gctctcccag
     2161 ctgagctata tccccatttc atcttccgtt ttcttcactc atagtcgctt cgctttcgct
     2221 tgccttctga gtggtgggtc tgagtggact tgaaccaccg acctcaccct tatcaggggt
     2281 gcgctctaac cacctgagct acagacccaa cggatgacct tcggtttttt gtcttctt
//
LOCUS       DANLXB010000260         2330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.262, whole genome shotgun sequence.
ACCESSION   DANLXB010000260 DANLXB010000000
VERSION     DANLXB010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..329
                     /locus_tag="PXD41_002493"
     CDS             <1..329
                     /locus_tag="PXD41_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-1-phosphatase/inositol phosphatase"
                     /protein_id="HDL6289968.1"
                     /translation="VGHDSNIIALLSALNVKPYKLAHQYEQTPIGGKVFIEIWKEKSS
                     QAQKVKLEYVYQSTDQIRKAIPLSLDKPPQHHILSLDYCQADQYGLCDYMEFKQLLEK
                     VIADTL"
     gene            637..>2330
                     /locus_tag="PXD41_002494"
     CDS             637..>2330
                     /locus_tag="PXD41_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL6289969.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLEQEYLNYEQIILENKQDKIKL"
BASE COUNT          803 a          377 c          401 g          749 t
ORIGIN      
        1 tagtcggaca cgattccaat attatagcct tactttctgc attaaatgtt aagccttata
       61 aattagcaca tcaatatgaa caaactccaa taggagggaa agtctttatt gaaatctgga
      121 aagaaaaaag tagccaagca caaaaagtta aactggaata tgtatatcaa tctactgacc
      181 aaattcgtaa agcgattcca ctaagccttg ataaaccacc gcaacatcac attttgagtt
      241 tggattattg ccaagctgac caatatggat tatgcgatta tatggaattt aaacagttac
      301 tggaaaaagt cattgctgat acattgtgag attttgacaa agtgagtgaa aaaggtagca
      361 taaaaaagtc gggacagttg ccagctgctc cctgtaagat gttgtttaca gcactagtaa
      421 tgctactatc cccaaaaagc tgctgaaagg cagctttttt gttgtatata aaagtacacc
      481 tttctacgct tcattctttt tctccaatta aacctaattt aggacttcta gtgataaatt
      541 cggtatcata tcttaattca ctacatatcg tgcaagcctt aaaattgaaa gggctgacga
      601 aatcctattt aattctgaca cacataaggg aatattatgt cgcaagatat tcaagccgat
      661 ttaaaaaaga tattggcact attaagccgt aaccgtcgat ttcaatcatt atttttatta
      721 ctgttaagaa gtgaacaatt tattaatagt gatgcacttt ctacggagtt acagctttca
      781 gtacgaacgg taaaaaaaga gattaagtta ttaaaagaaa aacttgaacc ttacggcatt
      841 cagatttttt ctcgaccgtt ttatggctat aaattattga ttcagtttga agaattacac
      901 acgcaactaa aacagtattt ccaaatatca cagccgatga cggtaaataa taaatttgag
      961 tctcgggtaa atgcgatttt acgccgatta ctggtgagcc agcgtgcatt gaaagttgaa
     1021 gattttcaga gtgagcttta tttaagtttt accagtgcct taacaaaaga atttagtcaa
     1081 gttaaagcct tgttaggaaa atatggattg atactcgaag cgaaacccta tcacggaatg
     1141 aacattgtag gtgaaagtta tcgtaaaata atgctcacag tacgattata taaatatttt
     1201 acccagcttg aacatccatt tggaattaaa gaatttgaac agtgttttgc ttgtcctatg
     1261 actgaaaaaa tccgtgaaag gttagctaag acaattattc atttcaattt agtattttct
     1321 gatatttatg ctgagcggtt tattatttac ttacgctatt tttataatca acagcctgag
     1381 ttattgttac cgaagttaaa ttttaattat caacagacga atgaatatca gtttgtaatt
     1441 aagttactgg aacagcttcg tgaacaagac agtcgttttg agtttaatcc ggaagttatt
     1501 cgatttctga cctatattgc gatagccagt acagatctct accgctttaa agattgtaat
     1561 tcggataatt acccattgtt gctagataag gcttgggaaa ttcatcgttt tatttttact
     1621 cagttttctg catatttaaa tttatcggaa attcacgatg acacttgccg taaagatttg
     1681 cttaaaatgc tgatccctat cgcaatgaaa atgatgctta gcatttcaga tgatgtggat
     1741 ttagggctat ttaaccaaac agaactacat agaaatccaa ttttggctca tacagtagaa
     1801 aaattagtgg atgacattga aaaaaactac gggtatagcc tatctattcg agaacagtat
     1861 tttatttttg atattttttc cggaatggtt aatcgaattg aattagaacg taaaccgctc
     1921 cgactggcga ttattgccct taatggcaga ttaagcaccc aacagttaaa acggaatatt
     1981 aagcggtact tttccgacta tattttgaaa attgaaacca aagtgctata tgagcttgcc
     2041 ataatggaag ataaacctta tgactactat ctctgtaatg aatatggaaa aaatatggct
     2101 attccctata agcctattta ttttgctgac agtagtttaa atgaaaatga atatgcaaca
     2161 tcactcaacg aagtatttta tcacgcttat caatatgatg aggtgttgcc tagcattaaa
     2221 tcgattgaaa ttgaagcaca atatcgccta aatgagtttc atcttgagca agaatatctt
     2281 aattacgaac agattatttt agaaaataaa caagacaaga ttaaactatt
//
LOCUS       DANLXB010000261         2287 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.263, whole genome shotgun sequence.
ACCESSION   DANLXB010000261 DANLXB010000000
VERSION     DANLXB010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..158
                     /locus_tag="PXD41_002495"
     CDS             <1..158
                     /locus_tag="PXD41_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL6289970.1"
                     /translation="SRKLIPDLNALFGQLPESMWYFLNIFQIPMAISLMISAMISRFV
                     RRMPFIG"
     gene            168..707
                     /locus_tag="PXD41_002496"
     CDS             168..707
                     /locus_tag="PXD41_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289971.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYGLNKEK
                     IHQYLLRKNKKLMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEVWRI
                     WGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTECKN
                     TLVWGCVIVIGLMFFKERI"
     gene            638..1201
                     /locus_tag="PXD41_002497"
     CDS             638..1201
                     /locus_tag="PXD41_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289972.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            1198..>2287
                     /locus_tag="PXD41_002498"
     CDS             1198..>2287
                     /locus_tag="PXD41_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL6289973.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGNLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSNEN"
BASE COUNT          773 a          313 c          472 g          729 t
ORIGIN      
        1 tgtctagaaa attgatacct gatttaaatg cgttatttgg gcaattgcct gaaagtatgt
       61 ggtatttttt aaatattttt cagataccaa tggctatttc tttaatgatt tcagcaatga
      121 tttcacgttt tgttagacgt atgccattta ttggatagag gagtgctatg gctgtttcag
      181 cgtatatagg gattcctgga agcggcaaat cgtatgaagt ggttaagtca gtaattttac
      241 ctgctgttgc ttcgaatcga agagttgttt ccaacattta tggattaaat aaagagaaaa
      301 ttcatcaata tttactgcgt aaaaataaaa aattaatgat tgaagagctt ggtgaagtca
      361 tatatgtaac gaatgaacaa tgcttggaat cggatttttt accatcaatg gacgaacaag
      421 attcattttg caaagctggg gacttgataa ttattgatga agtttggcgt atttggggaa
      481 acgacaagga tattccaaaa aatcatcgtt catttattgc tgaacatcga cattttgcag
      541 atcctataac aggtgtaact tgtgatttag tcgtaataaa tcaagatatt tctcaaattc
      601 caagatttat taaagaagga ttgagacaac ttaccgaatg caaaaacacg ttggtttggg
      661 gttgcgtaat cgttatcggg ttgatgtttt tcaaggaaag aatttagcta aaaagaaccg
      721 gacaaattct tatcaagaaa aatatgataa aaaaatattt gagctttata aatcttatga
      781 atctgatggt gcaagagaag cggttacaga tagtaggcaa tctatatttt catctttttg
      841 ggtcaaggta tggattattc ttttaccatt ggcattattt tattgtggct ataaccttta
      901 cattttccta aatggttcag agagtgaagt aagccataat actgaacagg ctaaatttgc
      961 ttctgatgaa aaccataacg atatagtaat tcatttactt cctactattg gaaaaccttt
     1021 atcaactaaa tggcgaataa caggggaact aaaaagggat aataaatcat ttgtgatctt
     1081 agctgacaat gaaaaccgtt taagacttga gcctagtagc cagtttagtt ttagcggtcg
     1141 aatgttgcaa ggagagatag atggtggaat agttagttat ttttcgggag aatctaaatg
     1201 aaaatccatc aattagggct attgctcatg attagctcat tttcttatgc taagaatgtt
     1261 gattttaaat tagaagctgt gccgttaccg aaagcaatat caataatata cgatgaagtg
     1321 ctacaaaagc catatatgct tgatcctaaa ttatctaatg attcaagggt tattagcttt
     1381 catacaacag agcaacagaa ttttgagcag tttattcaac ggtatttcag caatatgaat
     1441 atcagtgtat cagagaaaaa aggtgttgtt tatattggac atattgaacc aaaacagccg
     1501 aaagtaataa aacgtagttt tgtgtattcg cctattcatc gtgatgttga ttatttggct
     1561 agcttcctga aagatggaac agaaggaaac caagtttttg caagtggcga caagcttgta
     1621 tattatggta cttctgaaga tattgcacga gtgaaaagta tcttgaaatc aatcgacaca
     1681 aaaagccgtg aagtagtggt aactggttat gtttttgaag tgcagaatat tgaaaaagag
     1741 ggtagtggca taaacttgtt agcgaaattg ctatcaggaa aattaggcat tagtgttggt
     1801 tacaagcaaa gttatgaaaa ctttatcacc gtgaatgcag gaaatttaga tgcaatgttt
     1861 gaattgtttc gcacagatca gcgttttagg gttgtcagca gtccgacatt aagagtaaaa
     1921 tcaggctcaa gaggtaattt ttcagtaggc tctgatgtcc ctgtattatc gaatgtaacc
     1981 tatcaggacg gaaggcctat tcagtcgatt gaataccgtt caagcggtgt aatatttgat
     2041 attcagccaa cgataaaaga taaagcgatt gatttaaaaa ttcaacaact atcaaatttc
     2101 atcaaaacag ataccggtgt aaataatagc ccaacgttgg taaagcgtga tctggtaaca
     2161 gatgttacgg ttaaaagcgg tgatgttatc gttttaggtg ggttagctga aaataaaata
     2221 tctaatggcg aaaccagttt ttcattgcta cctaaaggtt ggttaagtgg aaaatcaaat
     2281 gaaaata
//
LOCUS       DANLXB010000262         2272 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.264, whole genome shotgun sequence.
ACCESSION   DANLXB010000262 DANLXB010000000
VERSION     DANLXB010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            19..1614
                     /locus_tag="PXD41_002499"
     CDS             19..1614
                     /locus_tag="PXD41_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL6289974.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1701..2000)
                     /locus_tag="PXD41_002500"
     CDS             complement(1701..2000)
                     /locus_tag="PXD41_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289975.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(1987..>2272)
                     /locus_tag="PXD41_002501"
     CDS             complement(1987..>2272)
                     /locus_tag="PXD41_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL6289976.1"
                     /translation="LISVLIFILLAFVFLLVSFVSLLFGLDNYLLPEQKVKVFFSIAI
                     IMFIAVTICGMMILSALKKQRHFMQSTLTELKLDIAAFKSALTLKQNGEH"
BASE COUNT          756 a          428 c          449 g          639 t
ORIGIN      
        1 gagcaaaagg agcaaaaaat gcaaagacat gaacagctag ctcaagtaca acaaacgcaa
       61 aaatgggatt ttattattat cggtggtggc gcaagtggtt tggggattgc ggtagatgca
      121 gcttcccgtg gctataaaac cttattatta gaaagccatg actttgcgaa aggtacatcg
      181 agccgaagca caaaattagt ccacggtggc gttcgctatc ttgcaaatgg cgatgttgca
      241 ctcgtgagag aagcattgcg tgaacgaggt cgtttagcta aaaatgcagc tcatttattt
      301 aaaaaccaaa gctttattat tccaaactac aaattcaaag actgtgtaat gtatcgtgtt
      361 ggtttaggct tatacgatat gctttcaggc aacctgagtt taggaaagac tgaaaacatc
      421 agtaaaactg aagcgaaaag acgtttacca accttaaatg atactggttt acgtacaggc
      481 actgtttatc aagatgggca atttgatgac tcacgtcttg cagtgaatat ggcacaaacg
      541 gtagtagagc acggcggtac agtactaaat cacgccaaag tgacttcact gcacaaaacg
      601 ccacaaggca aaattgatgg ggtgactttc tacgatgaac tcaatcaaca agaacatact
      661 gttttcggca ctgcggtgat taacgcaacc ggcgtattta tgaatgatat tttaagtatg
      721 gatcacggta gcacgaaaaa atttgtcgta ccaagccaag ggattcactt agtattagat
      781 aaatcattct taccaagtaa tgatgcgtta atgattccaa aaacctctga cggacgagtg
      841 ttatttgctg taccttggca cgaagtgtta gtcgtaggga caacagatac tctgattgaa
      901 aatccttctt atgagccaat tccattggaa caagaggtga actttatttt agagacagcc
      961 gcacaatatc tgacaaaaaa accaactcgt gatgatgtaa aagcagtctt tgccggtcaa
     1021 cgtccgcttg cggcaccgga aaaagaaggt caaagcacta aagaagtatc tcgtagtcac
     1081 aaagttctca ctgatgcaac cagcggtttg attacgatta caggtggtaa atggacaact
     1141 tatcgtcaaa tggcagaaga taccgtagaa gaagcgttaa aagtccactc tgaactaggc
     1201 aataaacctt gtgtgaccgt caacttaccg attcacggta atattccggc agcacaagtg
     1261 aatctacaag atcatctata tgtatatggc tcagatattc cacagttacg cgccttaatg
     1321 actgagaccc cggaatatgc acaaaaaatc catccgagac tagattatac cgttgcagaa
     1381 gtgatctggg cagttcgcca cgaaatggca caaacggttg aggatgtatt agctcgccgt
     1441 gttcgtttgc tcttcactga tgcgagagcg gcgattgata gtgcagcaaa agtggctgct
     1501 attatggcga aagaattagg taaagatgaa atgtggcaac aacagcaagt tatccagttc
     1561 cttgatgttg cgaagcacta tttattggta gattatcagc cacagccaat ctaatacgct
     1621 aaaagcaagc ggttaaaatc gataaaaata ttgcaattac gttatttgca actttttaaa
     1681 ccattttaac cgcttgtata ttagctatca tctcttttat gtttctgttg taataaaaag
     1741 aatgctgtta accccaatac agaaaagcta attcctttca tactcaataa tctttttacc
     1801 aaaaaatcta atgcaatggt tttaactgcc ggtgaattga ccagtgcaag ccctgtttgt
     1861 ttcacttgtt taaaaggctg cataatctca tttttggttt tattggtttc cgctttaaat
     1921 cgcattctaa gtgcattacc ttttagaact agaagttcct tttcggttaa tttaagctct
     1981 tccattttaa tgttctccat tctgtttcaa agttaaagca ctcttaaatg cggcaatatc
     2041 taattttagc tcggttaatg tactttgcat aaaatggcgt tgttttttca aggcagaaag
     2101 tatcatcatt ccgcaaatag tcacagcaat aaacataata atggcaatag aaaagaatac
     2161 tttaactttc tgttcgggta acaaataatt atctaaacca aataataaac tcacaaaaga
     2221 aactaataaa aatacaaaag ccaataagat aaatataagt actgaaatta at
//
LOCUS       DANLXB010000263         2265 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.265, whole genome shotgun sequence.
ACCESSION   DANLXB010000263 DANLXB010000000
VERSION     DANLXB010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            116..1687
                     /gene="guaA"
                     /locus_tag="PXD41_002502"
     CDS             116..1687
                     /gene="guaA"
                     /locus_tag="PXD41_002502"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL6289977.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(1848..2243)
                     /locus_tag="PXD41_002503"
     CDS             complement(1848..2243)
                     /locus_tag="PXD41_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL6289978.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
BASE COUNT          617 a          493 c          540 g          615 t
ORIGIN      
        1 tggactgcaa caggttgtaa taaaacgcaa tcttttatta ttacatatag aaacgatggg
       61 gtaggcggca cttttattaa catgaccaca acgccataat ttaaaggaaa ttacaatgac
      121 aaacatccac caccacaaaa ttttaatttt agacttcggt tcacaatata ctcagcttat
      181 cgcacgccgt gtgcgggaga ttggggttta ctgcgagctt tgggcttggg acgtaacgga
      241 agagcagatc cgtgaattta acccaacggg gattattctt tcaggaggtc ctgaaagcac
      301 cactgaggaa aacagcccac gagcgccgga gtatgtgttt aacgctggtc tgccagtgct
      361 gggcatttgc tacggaatgc agacaatggc gatgcagttg ggcggtttaa ccgaaacgtc
      421 cgaccaccgt gaatttggct atgcctcggt ggctctcaaa tctgccgatc aactttttgc
      481 aaatttaaac gatgatttga ccgcttgcga gccaaaattg gacgtgtgga tgagtcacgg
      541 cgacaaagtc accaaattac caccgcactt taccatcaca ggcgttaccc caacctgccc
      601 gattgccgcg atgtcggacg aaagccgccg tttctatggc gtgcagttcc accccgaagt
      661 gacccacacc aaacaaggct tggcgttgct gaaaaacttc gtggtcggca tttgcggctg
      721 tgaaacgaac tggacggcag aaaacatcat tgaagatgcg gtgaaacgca ttcgtgagca
      781 agtgggcgat gacgaggtga ttttaggttt gtcgggcggg gtggattcct ccgtcaccgc
      841 cttgctatta catcgtgcta tcggtaaaaa cctgcactgc gtatttgtgg ataacggctt
      901 gctccgcttg aacgaaggcg atcaagtcat ggaaatgttc ggcaacaaat tcggtttgaa
      961 cattgtgcga gtgaatgccg aagaccgttt cttagaagcg ttaaaaggct tagacgaacc
     1021 ggaagctaaa cgcaaaacca ttggtaaagt gtttgtggac gtgtttgatg acgaaagcaa
     1081 aaaacttagc tcggtcaaat ggcttgcaca aggcacgatc taccctgatg tgattgaatc
     1141 cgccgccagc aaaaccggca aagcccacgt gattaaatca caccataacg ttggcggctt
     1201 gccggattat atgaagctcg gcttagtcga accgttgcgt gaattgttta aagacgaagt
     1261 gcgcaaaatc ggcttggcac tcggcttacc ggctgaaatg ctcaaccgcc acccgttccc
     1321 cggcccgggc ttaggcgtgc gtgtgctggg cgaaatcaaa aaagagtact gcgatttact
     1381 gcgtaaagcc gatgcgatct tcatcgaaga actgcacaaa gccggctggt actacaaagt
     1441 cagccaagct ttcacggtat tcttgccggt gaaatcggtg ggcgtaatgg gcgatggacg
     1501 caaatatgac tgggtcgtca gcctgcgtgc ggtggaaacc atcgacttta tgaccgctca
     1561 ctgggcgcac ttgccgtatg atctattagg caaaatctcc aaccgcatta ttaacgaagt
     1621 gaacggtatt tcccgtgtgg tgtatgacgt gagcggaaaa ccaccggcaa ccattgagtg
     1681 ggaataactc ttacaaaata ggcttcttat aacctaagtt cagtatctaa agctgaaaaa
     1741 tgttgttaac tgcttaatgt agcggtttag aataaaggat tgattccaac ggaatcaatc
     1801 cttaaactaa gtgcctttta gtaaaactaa atattcaatt tttagtttta tgatttcagt
     1861 aagccagatg aaccttcgga ataatctcta ggttgatctt cttccgtttt ttctgccgga
     1921 ataggtaatt tggtttgttg gaaaaaggta atattttttg atgcttctgg taatagcttt
     1981 tcagagcttt gtgctaaatg ggtataaagc tttttataat cagaagctag acttgaaagt
     2041 aattgggctg attgctcaaa gtgttgttca agtttttgtt tttgctcatc cacttgagtt
     2101 ttggtttgct tcaactcttt ttccagttca tgctgttttc tgacactact gttaaatact
     2161 ctaactagag tgcaacctat tacagcacct acaataaatg ctgccataat ggctgcccaa
     2221 acatctgttg tccattgttc catcataaac tccttatgtt ttagt
//
LOCUS       DANLXB010000264         2225 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.266, whole genome shotgun sequence.
ACCESSION   DANLXB010000264 DANLXB010000000
VERSION     DANLXB010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            99..446
                     /locus_tag="PXD41_002504"
     CDS             99..446
                     /locus_tag="PXD41_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6289979.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            443..1360
                     /locus_tag="PXD41_002505"
     CDS             443..1360
                     /locus_tag="PXD41_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL6289980.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1360..2151
                     /locus_tag="PXD41_002506"
     CDS             1360..2151
                     /locus_tag="PXD41_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL6289981.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
BASE COUNT          746 a          361 c          383 g          735 t
ORIGIN      
        1 ttacttattc tcttcttaag aagtaacatg tttataagat tagcttttaa tgtatataaa
       61 ataaatgtgc taatgtagta gtgtaaaatt ggtattatat gttcagagaa gaagctattg
      121 aatatcaatc gaaaaaatgg aaaagcacag ctgtactatt tagcagagtt ccagctttgg
      181 ttgtcttttc catttctttc tttatcttta ctgcctttat tctatttatt gtgtttggta
      241 attatacccg ccgtgaaacg gttgtgggtg aattagtgat gcaatctcat ccgattttat
      301 tatctgcccc aaaatccggc tatatatccg aaaattatat tcaaccacat cagcaggtaa
      361 aaaaaagggc gatccgctgg ttaaaattac gctggataga attacgcata gcgaaaatat
      421 taatgttaat tctattcttt cgttgaaatc acaaattcaa gcaacagaac aagcgataac
      481 tgctttatat aagaataaat cagaaactat taatagcctt gaaaagcaga tcaaaaacag
      541 tcaaaaaatt tatcaagata agcagagtta tttagtggaa attgaaaaaa gtatgaatga
      601 ctatgcggag ttggttaaac gctatgagaa attattaaaa gtagggcatt ccagccacga
      661 tgaagtgaat attcagaaaa gccgttattt ccaacaaaaa tcactgttta atgagctaaa
      721 gcaagaatta attcaattaa aatccaccca acttagcttg gaaaatgaaa ttgaaacccg
      781 taaaaccgaa tttaataatc agattattcg ctatgaaatg caaaaaagcg atttaaacat
      841 tcgtttaatg gaatttgaat ctgtttcaga tattattgtt aatgcctctt tagatggaaa
      901 aattgaaagt accagcgtaa cagttgggca aattattaaa gaaaatgacc cgcttgcaca
      961 aattctgcca cagaataaag gaaattatca gctagtgatg tgggtaccga atagtgccat
     1021 ttcatttatt aaacaaggcg atgaggtgaa tattcgctat gaggcttttc cgtttgaaaa
     1081 attcgggcag tttaagggca aaattacgtc aatttcaacc ttaccagctt ctttgcaaga
     1141 acttagtttt tataaaaatc tccctgtaaa tttagagcaa ggtattccgc tttataaaat
     1201 tctgattgag cttgccgatc aaaacgtaaa atataatgat acctcccttt attttatgag
     1261 tggaatgaaa gccgaagcca cgttattttt agaaaaacgt aaactgtatg agtggatatt
     1321 tttccctatg tatcaattac gcaaaaatat ggagcaataa tgacaggaat taagcagtta
     1381 aaatttgatt ttcggagaag aatacctgtt attttgcaaa ctgaaacagc tgaatgtggc
     1441 ttagcctgtt tagcgatgat gttgggctat tacgataaaa acaccaattt atttgaattg
     1501 cgaagtcaat atggtacttc ctctcgtggc gtaacgctgc atactttaat ttctattgca
     1561 aatgactgtg gtttaataac tcgccctctt tctctagagt tagatgaagt accacaactt
     1621 cgtctgcctt gtattcttca ttgggatttt aatcattttg tagtattaac tcacgcaagt
     1681 gaaaaacagt ttattatcca cgatcctgct ttcggtaaac gtaaattatc ccgtgctgaa
     1741 ttttccaacc attttaccgg agtcgcttta gaagtttggt ctgaagttaa atttgagaaa
     1801 agcaacaatg aaaataccat tagtttgtat gaaaccttaa agcatatttc tggcataaaa
     1861 ggtgcattag tgaaaatttt tgccctttca atgctcattg aactcattgc cttattgatg
     1921 ccaattggaa cacagttagt gatggatcac gttatgcaag cgaaagatca atcattactt
     1981 ttaattatct gtattgggct atttttattt accctttttc gcacaatggt cagtatgttt
     2041 agggcttggg tttccttgaa aatgaattat ttaattgatt ttcaatggac agccagtttc
     2101 ttttctcatc tcttaaaatt accgcttgat ttctttgaaa acgccaagta ggtgatattc
     2161 attcccgatt tagttcatta aaaaccattc agaaaactct aacttcaagc attattacca
     2221 cgatt
//
LOCUS       DANLXB010000265         2219 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.267, whole genome shotgun sequence.
ACCESSION   DANLXB010000265 DANLXB010000000
VERSION     DANLXB010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..609
                     /locus_tag="PXD41_002507"
     CDS             <1..609
                     /locus_tag="PXD41_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6289982.1"
                     /translation="AEEAKKIAEAKGIGNKEYKDGLNELEEKNETGKNGEEIRTYGYL
                     YNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLPTEGKATYKGEAFDSHGNNSN
                     SVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIKNDSIIASAHQKYNDQAVGNG
                     SYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTREEQK"
     gene            658..2052
                     /locus_tag="PXD41_002508"
     CDS             658..2052
                     /locus_tag="PXD41_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6289983.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT          743 a          377 c          498 g          601 t
ORIGIN      
        1 gctgaagaag caaaaaaaat tgcagaggca aaaggaattg gcaataaaga atataaagat
       61 ggattaaatg agttagaaga aaaaaatgaa acaggtaaaa acggagaaga gattcgaacc
      121 tatggttatc tctataacag ccattattcc gttgtaactg ccaaaatgaa acaaacttta
      181 caggaaaatg gtcgtcaaat ggaacctacg gttgaagtga aagggcttaa aactgagaat
      241 ttaccgacag agggcaaagc aacatataaa ggagaagcct ttgattctca cggtaataac
      301 agcaattcag tagtaggtgg agaattaatc tataatgttg atttctctag tcgtaccgga
      361 tcaggtctag ttaaaaatgt acagggcggt tctatcgagt tagcacaagg cgaaataaaa
      421 aatgatagta ttatagcttc tgctcaccaa aagtataatg atcaggctgt tggaaatggt
      481 agttacaata tccaattctt tggtccaaat gcagaagaaa ttggagggaa aattgagctt
      541 aatggtgagg gcgaaggctc aatgaagcag atgttaggta ttgcaggaac ccgagaagaa
      601 caaaaataac atttaatacc caatgccgtt taatcttaaa cggcattctt ttttactatg
      661 tataaaaaac attttctatt tttacttgtt tcgcctttag taatggcgga aacggttgag
      721 tttcagcaag atcccaaaga gtttgatggg cagcgacaag cggttaaatt tgagcaagaa
      781 attgcaaaaa aggatttaaa attaaccgct tacttggagg aagataattc tcttaaaggt
      841 attgaacagc acattaacca agcgattctt agacaagatt gggcgaagct ggaaaggctg
      901 cttggcgatt atgcaaagca agagcaattt gatccgctac ttttagacta tgctttggcg
      961 gcattggctt atgctaaaaa agattatcgc tctgcggcgt tttattatca gcagttgctg
     1021 aaaaaacagc ctgatttaac ctaccctcgt tttgatttgg ctctgatttt aaaagaggat
     1081 tatcgctaca gggaagcaga gcaagaattt aagcaactca aaaccgatga tttacgcaat
     1141 gcggtgaaca gtgcgttggc tcaaatagag gaggaagaga gctggaagcc ggatttttat
     1201 ttgcaatata ctcaaaccaa caatgtgaat aatgcttctt cgtcgccaac ggtaaatgta
     1261 aacgggcgga tttttattaa agaatcagac agcttgccgc agtcggcaaa aggcgtaaga
     1321 tatggcgttg gcttgagtaa aatgcgaaat atcggcggta atcattttgt gggagtcgat
     1381 cttggctata acggcgttta ttactggaat aaccacgatt atagcgaaca gtcggtctca
     1441 ctaacaccaa aatatagcta cagaacggca acttatcgta tcggggtttc gccctttatt
     1501 gagcagaatt ggctgggtag ctcacggtat aactatcaat ttggtagcag tatcaatgct
     1561 gttaaacttt ttgaacgagg gctgatttcc ggctcattca gccatctgca aaaacgttat
     1621 agtgaacagc atattgccga ccgttacaat ggttatcgca accaactcac gctaggtacg
     1681 caatggcaag cggtcaaaaa ttggcgattt tttgcaaatc ttaacgctag ccgtgaaatt
     1741 acccgtgaga aagctcaatc ttccaataag tggctggcga ccattggcgt aatttaccaa
     1801 accccaagct gggcaagttc ggtaagtgtc ggatatggca agcgttattt tgctgataaa
     1861 cattatctgt ttggctataa acgccaagat aaggaatatc aagcgaatgt ggcggtgtgg
     1921 aatcgaagtt ggcactggca agggattgtg ccgaaattga atttccgtta tcaaaaaatc
     1981 gatagcaata ttgccgattt ctactctcgt agcaataaag aagtctttat gaccttagag
     2041 aaactatttt aaggctgtgt atgaatgtcg gggagaaaaa ttttctcccc gatatttatg
     2101 tgtagaagat cagacttgat ctgacaattc actctaaaaa gtgagagttt cccgtttaga
     2161 atatgagtgt caaaaatcaa tctaaacaaa aaggaaactc tcatgtttta ttctaacaa
//
LOCUS       DANLXB010000266         2176 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.268, whole genome shotgun sequence.
ACCESSION   DANLXB010000266 DANLXB010000000
VERSION     DANLXB010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            156..534
                     /gene="rnpB"
                     /locus_tag="PXD41_002509"
     ncRNA           156..534
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXD41_002509"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            595..1233
                     /locus_tag="PXD41_002510"
     CDS             595..1233
                     /locus_tag="PXD41_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL6289984.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            1224..>2176
                     /locus_tag="PXD41_002511"
     CDS             1224..>2176
                     /locus_tag="PXD41_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL6289985.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSF"
BASE COUNT          665 a          366 c          467 g          678 t
ORIGIN      
        1 gttcacttag acttcaaacg tgcgtaattt ttacgagtga attaaagcga agaggattaa
       61 gtttttaaat gaacttaatc cttttttatt ttgccataat aactacaagc ggttatttcc
      121 ttgcaatttt ttgcgaaagc attatactct agtgctgagt tggttaggca atcgctggtt
      181 tattgaagcc tctaaattcg tgaaaacgta aactggggga caagtaaacg agaggaaagt
      241 ccgagctaca cagggcagag tgccggataa cgtccggggg gcgtgagcct acgaccagtg
      301 caacagagag cagaccgccg gctttgtcgg taagggtgaa agggtgcggt aagagcgcac
      361 cgtgtgggtg gtaacattcc acagcagggt aaactccact cgtagcaaga ccaaatagga
      421 actcaatcgg tggcccgctg agagttcggg taggttgctt gagcgtatgt gtaaatgtac
      481 gtctagagga atgattgtcc acgacagaac tcggcttatc gaccaactca ctaaattctt
      541 gaaatgcgaa cagggggaac ttgttcgctt ttttatttta tagtgaaagt aaatatgaaa
      601 tttattaaga cgattatcac gttaattgca ttatattcaa tgccagtttt ttctcaccca
      661 cattcatttg ttgatttgaa aacgaatgtt attgtggaag gctcaatgtt gaaatctttc
      721 caaatggaat ggatgctaga tgaaattgct tcttctgagt taatttatga agtgaaaaat
      781 agccaagata aagaaaaaac tcagcagaat atcactgcag aaatggtgca aaccgcattg
      841 caaaatcatt attttagcac cttatatgat agtcaaaatc agccgataaa atttacgaca
      901 aagcccacag cgactcgctt tgaaatcaag aataacagag tgatttttta tattactttt
      961 catttagcta aacctcacga attaaagcag agtaaagtga gattctatac ttatgaaccg
     1021 agttattata ttgcgatgga atataatcgc cctgctgatg tcaataccag taatgcaagt
     1081 tgtaaagcaa cattggtgca acctcaagta gatagtaagt tacgcttata tgcttccggt
     1141 ttggataaaa accaatcact ggatatgcct gaaaatggag attactctct tggtgcccaa
     1201 tttgctcaaa aagtggagat tatatgcgat taaaagcaac atattgggga atgatagtga
     1261 taggattttt gagcctattt gctctttatc agctttatcc aatgatattg tttaaagtga
     1321 tggaatggca aaaaaacttt aatttacagc tttccgcttc gctcaatgaa ttagctgaaa
     1381 atcaaagtaa agccggtatt accttagtat ttattagttt tttatatgga gtatttcacg
     1441 cagttgggcc tggtcacgga aaatttattc tgagcagtta tctttctttt gaaaaaacaa
     1501 aattaaatca ggcgatgaaa atcacttttg cctcagcatt ggtgcagggc ttagtggcaa
     1561 tttcattggt gacggtgatt gtggtgattt ttactctctc tcgccaatat tttaatttaa
     1621 ccctaaaatg ggttgagcgg gggagctttg gtttgatgat cttgttcggc atttactggt
     1681 gttaccaggt gtatcgaacg gtgaacagag cgcgaaagcc tatcattaaa tccattcgta
     1741 tttcgcaaaa aaaagctgga aaattaccgc ttgtcacgca gaaagggcat attcataccg
     1801 aaaattgtag ctgtaggcat aaacatttac cgacttcaaa tgaaatgcaa caagtgagag
     1861 attggaaagc acagctgatg ttggtattaa gtattggctc aagaccttgc tctggcgcta
     1921 ttcttgtttt atttctttct tatacgctca atctctatgc ttggggggtt atttcagcat
     1981 tagctatggc agtaggaaca gggctgactt taagcttatt tgcttatctt gttatcattg
     2041 cgagaaataa ggcagttaag gttagccaat ggtatttttc agctcaaatt aatcgaaata
     2101 tcgtttggat attaaaattt acacttggac tcgcattaat tctatttgga atggtattat
     2161 ttcacagtag tttcat
//
LOCUS       DANLXB010000267         2113 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.269, whole genome shotgun sequence.
ACCESSION   DANLXB010000267 DANLXB010000000
VERSION     DANLXB010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..734
                     /locus_tag="PXD41_002512"
     CDS             <1..734
                     /locus_tag="PXD41_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6289986.1"
                     /translation="FDVKVVRNNPNVGAAQSRNVGATNATQEWLLFLDDDDRFMPEKC
                     ERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKHKSELTKENILKANKIGGMPM
                     IGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEPLYVDEALTYCTFHTKRSSVS
                     TDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPHVMNLSRKAAGYYFEMFKQTK
                     NIKQLIIALVIFISPKLAINLKRFM"
     gene            734..1534
                     /locus_tag="PXD41_002513"
     CDS             734..1534
                     /locus_tag="PXD41_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6289987.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(1571..2077)
                     /gene="msrA"
                     /locus_tag="PXD41_002514"
     CDS             complement(1571..2077)
                     /gene="msrA"
                     /locus_tag="PXD41_002514"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6289988.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
BASE COUNT          633 a          383 c          449 g          648 t
ORIGIN      
        1 catttgatgt gaaagtggtg cgaaataacc caaatgttgg ggcggcacaa agccgaaatg
       61 taggggcaac taatgccaca caagaatggc tactgttttt agatgatgat gaccgcttta
      121 tgcctgaaaa atgcgaacgt ttagcggcag agattgcgaa caatccaact gccaattttg
      181 tgtaccaccc ggcaaaatgt gaaatggtaa atgagggttt tacttatgtc accaagccgt
      241 ttaaacataa aagtgagcta actaaagaaa acattctaaa agcgaataaa attggcggaa
      301 tgccgatgat tggcttgaaa aaatcactct tttgtaaaat tggtggatta tctgaccgct
      361 tgcgatcact tgaagattat gatttcttac tgaaattatt ggaagaaccg agttttgagc
      421 cattgtatgt ggacgaagcc ttgacctatt gtactttcca taccaaacgc tccagtgttt
      481 caaccgatac cactaataca gaaaaggcta ttgagtatat tcaacaaacg tatatcaaaa
      541 cacctgaggc gaataatttt aagctcaatt cgctttatat tttaagttat ccacacgtaa
      601 tgaatttatc ccgcaaggca gccggttatt attttgagat gtttaaacag actaaaaata
      661 tcaaacaact gattattgcg ttggttattt ttatttcgcc gaagttggcg attaatttga
      721 aaaggtttat gtaatgaaat tttccgtttt aatgtcgtta tacattaaag agcaaccgca
      781 atatttaaga gaatgttttg aaagcttgaa agtacaaact gtgcaggctg atgaaatcgt
      841 tgtttgtttt gatggtgcag ttacgcctga attagaggcg attgtagaag aatatagtgc
      901 aattttgccg attaatgcgg tgaaattccc acaaaatcga ggtttaggta aaacgctaaa
      961 tgatgggcta acctattgta agaatgaatg ggttttcaga atggatacag acgatatttg
     1021 tatgccggaa cgtttcgaga aacaagtggc atttattgaa cagaatcctg aaaccgtgat
     1081 ttttggcggc caaattgctg aatttgggca agatattcac gatcttgtcg cttaccgcaa
     1141 tgtaccaacc acggtggagg aaatcgtcag attcactcgc ttgcgttgcc cgtttaacca
     1201 tatgacggtt gcttatcaga aatccaaagt gttggaagtc ggtggctatc aagatctgca
     1261 agaagattac tatttatgga tcaaactcat tgctcaattt aaacaagtgg caaacttgcc
     1321 ggatttatta gtgtatgccc gagtcggtaa cggaatggtt ggcagacgcc gtggaatggc
     1381 ccaagcagag gcagaatggc gtttatataa attaaaaaac cgctgccaga ttcacgatcc
     1441 gatttcaggt tttgggattt tcataatgcg tgcaattcct cgtttattac cggtttcagc
     1501 actgaaaaaa gtgtacggtt tgctcagaaa ataaagctaa aaaaaccaca gattgctctg
     1561 tggttttttg ttattgattc ttcaaaatct cattcattaa ttgaatatca atatggcagt
     1621 agccgttcgg gttttttact aaatattctt ggtggtactc ttcggcaggg aaatattgct
     1681 ctaacatttg gttttccact gccagcggct gatcaaattg ggtttgtaat tgtgcaagtg
     1741 cggcggttac caccggttcg tcttgtgggt cggtataata aataccggtg cggtattgaa
     1801 taccgatgtc gccaccttgt ttgttaatgc tcaccgggtc tattacttta aagaagtaat
     1861 ctagtaattt tgccaagcta atttgattgg catcataagt cacttttacc acttcagcgt
     1921 gtccgctacc ggcacacacc tcttgatagc ttgggttatc ggtattaccg ttggcatagc
     1981 ctgattgtgc cttaatgaca cctttaatcc gttgcataaa agattccacg ccccagaaac
     2041 agccaccggc taagtaaatt tcacgaatat tttgcatatt acctctctat aattgtaaat
     2101 ttttcgataa att
//
LOCUS       DANLXB010000268         2059 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.270, whole genome shotgun sequence.
ACCESSION   DANLXB010000268 DANLXB010000000
VERSION     DANLXB010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(54..746)
                     /locus_tag="PXD41_002515"
     CDS             complement(54..746)
                     /locus_tag="PXD41_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6289989.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            complement(764..2038)
                     /gene="nadR"
                     /locus_tag="PXD41_002516"
     CDS             complement(764..2038)
                     /gene="nadR"
                     /locus_tag="PXD41_002516"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL6289990.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
BASE COUNT          623 a          396 c          376 g          664 t
ORIGIN      
        1 ttatgaatgg gaagggtaaa atgacaattt gtttaattca gtcaaatttt tggctatttc
       61 tctcgatcat caacacctaa aattagataa tttccattaa tatccgctag gctacgaaag
      121 ccgatattat aaatagcaca ttctctgctg acatttagat tgccataatt aaaattatca
      181 tggtagtggc catggaaaat tttgctcgcc cctaattttc ttgctagctg gttgattaca
      241 gagaagcctt gagggtgtgg ctttggtgct tcgtgtgtaa ttaaaatatc ggctttttca
      301 ttttccaatg cttcaaaatc agaagggaag atcgaagagc ggtgccttaa tggaatacca
      361 ccacgccaaa ttttttccgg agcagagtat tggcaaaaat ggatgggatc aaaaaacatt
      421 ggacgattgg gcggcatcca aatatgacct cggaagaccc ctccaatacc tgcaattttt
      481 attccttgaa tgtcaactac tttaccgtga atattgcgtt ctttccagct actattccaa
      541 atagcatcaa aggcagcaac ggttttactg tcatggttac catgaataaa ccaaatatca
      601 caatactgcg aaagccgatc taattcatca ggagtagtca attgaagatc gcctagaata
      661 actaaagcta cctcctccgt ctgctgttgt agaatcggat aaagatgctc gtagctaccg
      721 tgtggatcgc ctgcaaaaag tatcatgtta tttcctgtgg cagttattca aattcgtgaa
      781 tattatattg cttaaactgt aatgggattg gttcttcatt taaaatagct tctaccacct
      841 ctttggcttg attgtagcga tccaaataac ttggagattc aattttaata taaggaatat
      901 ggtgtttttc tagtagtttt ttcagtaggt gttgaaactg ttgacgctgt tttttcgatc
      961 ctaaactgcg taaaccatcg gctacccatt ttgtattgtt agaaagtaaa atcgtcacat
     1021 caaaaggata ttcgcggatc attgaatcca gaaacgggtg agccttccct tcatactgaa
     1081 tacagaacgc ttgagttgtg atgtaatcgg tatcaataat agccacttta tgagcatgtt
     1141 tcatggcata atcaacgtag cgttgatgtc caagcaccat ttgcggatag tcggaatatt
     1201 gcattgcttg ttcattgcca ccaagttgct caaacacaaa ctcacgccca tattcccaag
     1261 cagaggtagt gttaaataca ttcgctaatt tgctcaccaa cactgattta ccactgcttt
     1321 caccacctaa aatcgcaata gttttaacaa agaaaggacg aacttctttc ggaataaagc
     1381 gccagtattg aaaaggatta ttacgaattt gtgttgctga aatattaaag gattcacgag
     1441 taggatcgac aagttgaact tctagattca aatatttttc ataagattct ttatcttgaa
     1501 tttcactact aaaaacaata gtaggattaa tgcttttttc ttcaaatagc gctttaacac
     1561 gaccagacca atcttcccag ccatttggat agctcggaat accgtcttca actaaatggt
     1621 gaataaagat ctgtttttgt tggtatttaa aaatttgctg tacccagcgt agccgatctt
     1681 catttgtcgg cattcgtttc attttacttt cctggaaaag acgtaaatcc cgttcagaat
     1741 cggtacaaac aataacatgt aaaacatcta ctttactaaa tgcttcatag atcatattaa
     1801 tatgacctgt gtgaatagga tagaatttgc caaaaataac cccggaacgc tggttgctat
     1861 cttctacgat atctaaaacg gaatgcaagg ctttaagctt attggcgctt ggatttttga
     1921 tttttccgct tactaactga ttaaaataag ctcgggttac cccagcttgt tcacaaatat
     1981 cattcacttt gagtttaagc tgtttgcgct tttgttgaag ataagcaaaa tctgtcataa
     2041 tgattccctc gattttttg
//
LOCUS       DANLXB010000269         2033 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.271, whole genome shotgun sequence.
ACCESSION   DANLXB010000269 DANLXB010000000
VERSION     DANLXB010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXD41_002517"
     CDS             complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXD41_002517"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL6289991.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(360..2012)
                     /locus_tag="PXD41_002518"
     CDS             complement(360..2012)
                     /locus_tag="PXD41_002518"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL6289992.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          585 a          444 c          428 g          576 t
ORIGIN      
        1 aaataaagag caataagtga aaaaaaagag ttgaaatttg aagaaatgaa taaaatcaaa
       61 aggatagcga atgataaatt ttaagcataa aaaagccgtg tattttttta cacggcgaat
      121 gaaaagtctg attaattgat ttcaatgata tcaaacagtt tttctaattg atggcttaaa
      181 agagagagtg gacgtttact tgctaatgta aaatttaggt taaaggcgct gtctgttgat
      241 tctacattta agcatttcac ctcaaaacca cggtgacgta taacccgtaa aatacgctct
      301 aaggtttcag ggcgtttgtt agctttaagc gttaattgat attcttccat cttattctcc
      361 tatacctcat cgtctaacat atcggcatta cacgcccccg gcggtaccag tggccaaacg
      421 ttatcttcct gtggaataca aacgtgaagt aagtaagccc ctttggcatt gaacattctg
      481 tctattgcat ctgacacttc gctcgctttc tcaattcgct caccgtcaat atcaaaggct
      541 ttcgccaaca acacaaaatc agggttatca tctaaaatgg tttggctgtg tcgcccgtgg
      601 aagaacagcg attgccattg gcgaaccata cctaaacgtt ggttatccag taataggatt
      661 ttgaccgcta aatcagctct tttaagcgtg ccgagttctt gaatattcat cataatcgag
      721 ccatcaccgg taattaaaat aacctgatct tccgctcgag ctttgattgc cccaatcgcc
      781 gcaggcaagc caaaacccat agagccaaaa ccggcagagg tgatatagtt tttcggatcg
      841 tgataagtta aatgttgtgc cgaccacatt tgatgctgcc ctacatcggt agtgacgatg
      901 ctgtttttgg ctttccgctg tgaaagcgtg tgtaataacg ccacggcatc aatattgcca
      961 tcaccactat tttcttgata ttgaaagtca aattgctgct ttaaattacg cacatcttca
     1021 cgccatggtt caatatctaa cggttgagcc aagtaattca cggcttcaat caaattccct
     1081 tttaaggcaa cttgtgcttg acggagcttg ttgatttccg cattgtcgat atcaatgtga
     1141 atcactttag cgtgaggggc aaaagtgtct aatttgccgg taacacggtc atcaaagcgg
     1201 gcaccacagg caatgagtaa atcacactct tgtaccgcgt aatttgctgc ttttgtgccg
     1261 tgcataccga tcattcccat atagagcgga tcggttggat cgatagtgcc taaccctttt
     1321 aaggtagaaa cagacggaat atttgcaatt tttacaaaat ttctgaccgc ttgtacacca
     1381 tcagccatac taacgccacc gccgacataa agtaccgggc gtttggcggt ggctaataat
     1441 tgtttggcaa ccactaattt gttgggatct tgtgcatcgg caggttcttt aggataaacg
     1501 ataggcagag ccgaagtttg agctagttgc acatcacgtg gaatatcgac cagcaccgga
     1561 ccaggtctgc cactttgtgc aatttggaat gcgagggcta aaatttcagg gagctcctca
     1621 atattctgaa caataaaact gtgtttagtg caagcgagtg acaaacctag tacatcagct
     1681 tcttggaagg catcagtgcc gattaaatgg ctggcaactt gtccggtaat tgctaccaca
     1741 ggaatagaat caagtgcggc atcgcctaaa ccggtgatta aattagttgc cccagggccg
     1801 gaggtcgcaa tacaaacccc tactttacct gttgcacggg cataaccgat agctgccatt
     1861 gcagcacctt gttcattgcg gcaaagtaaa tgatctaagc ctgaatcata aattgcatca
     1921 taggtaggca taatagcccc gcccggatag ccaaaaagtg tcgttacccc gtgagctttt
     1981 aaactctcgg tgataaatct tgctccattc atggatgttg tgtccttaat att
//
LOCUS       DANLXB010000270         1992 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.272, whole genome shotgun sequence.
ACCESSION   DANLXB010000270 DANLXB010000000
VERSION     DANLXB010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            26..673
                     /locus_tag="PXD41_002519"
     CDS             26..673
                     /locus_tag="PXD41_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6289993.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(751..1380)
                     /locus_tag="PXD41_002520"
     CDS             complement(751..1380)
                     /locus_tag="PXD41_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL6289994.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(1452..1925)
                     /locus_tag="PXD41_002521"
     CDS             complement(1452..1925)
                     /locus_tag="PXD41_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL6289995.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT          627 a          373 c          365 g          627 t
ORIGIN      
        1 gttttagtaa agggatagaa ccaagatgat tagtattaga aatgtaagta agcaatatcg
       61 aactaataac ggttggaaaa ccatattaaa agatataaat tttgagctga aaaaaggcga
      121 aaaagtgggg attttagggc gcaatggtgc aggaaaatca accttaatcc gtttaatgag
      181 cggagtagaa cctccaacaa caggtacgat tgaacgtcaa atgtcgattt cttggccact
      241 ggcatttagt ggtgcattcc agggtagttt gaccggaatg gataatcttc gtttcgtcag
      301 ccgaatttat gatgctgatt ttgactatgt aaaatctttc accgaagaat tttcagaact
      361 cggtgaatat ttatatgaac cggtaaaaag ctattcttct ggtatgaagg cccgtttagc
      421 ctttgcatta tcgctttcta ttgaatttga ttgttactta attgatgaag tgattgcagt
      481 aggcgatgct cgattcgctg ccaaatgtaa gcacgagctt tttgaaaaac ggaaagaccg
      541 ttcattgatt ttagtttctc atagcccagc ctcaattaaa gaatattgcg attctgcaat
      601 ggttttagaa gagggtatca tgcatacttt tgattctata gataacgctt ataatttcta
      661 caataaaaca taaaagaaca agcggttata tttcacaagt ttttcgcaaa aaactctcaa
      721 aatataaccg cttgttacta aaactgaaaa ttagaaacct gcgtcttttt ctaattgttc
      781 aactaatgcc tcagctaaac ctaaagcatc agctaaatta gctaagaaaa cgatttcttt
      841 gcgttctaaa tctctgcata ctgcacggga agctaagtaa acttgtgtag ccaatgcttg
      901 gtcattacct acttggcggg caatctcttc aactgtagcc ggagtgtcca tttcttgacg
      961 aatccactca atgacttcag cctcatctcc aacttgggaa acaatagctg ctttttcctc
     1021 ttcagtaata gcaccatctg aagcagcagc ggcaatcatt gcttgtaaaa tcactttact
     1081 tgccacattt tcatctacat tttcaaaatt attttggcta agttctgaaa ccgatgaatt
     1141 ttgcgcttga tacttttggt atgcttgata agcaaggcta ccgatagcgg ctaaagagcc
     1201 taattttgct aaacttgaac cgccattacg cccaaataac attgaaatta aaccaatagc
     1261 gacagcgccg ccaccaattt tagcgatttg atcgttttta gaattacctt taattaatcc
     1321 gtttgtagcg gcatcttttg ctgtatctaa tacttgactt aaaatcttac tgaaatccat
     1381 ttttgttcct cttggtaagt aaatgaaatt tactcattag tccttagatt caaacaagag
     1441 ttcaattcaa attaaagata atttccacaa cagtgcttaa acttctttcc ggagccacat
     1501 acacaaggtt gtttttgatg aggcaaaggt acggtaggat ccacaaaaaa ccatcgctca
     1561 tcaatttgaa caaaaagaga ggtttcgtgg tgtccctgta tcccctcatc tgtatcaaaa
     1621 aaggctttaa attcaacctg actatgtatt ctcgaaagag aaggtaagtg atttagcacg
     1681 gataatccta cccattttgt attttcagcc cactctttca ttgcagtctg atcaagtaat
     1741 ttctgctgac ttggcactgt cgtttccaca atatagggaa tattaaccaa agtataagca
     1801 ctgtaacggg agcgcattaa ttgctctgcc gttgatgcaa atgtctgttt taaatggaaa
     1861 ggttggcaac attcagcgta gcgtttgcct gtttggcaag gacaagcggt gattttttct
     1921 aacattttta catttccgca taaaaataaa gatgtgaaaa gtttacgcta taaataaaga
     1981 aaaataaatt tt
//
LOCUS       DANLXB010000271         1986 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.273, whole genome shotgun sequence.
ACCESSION   DANLXB010000271 DANLXB010000000
VERSION     DANLXB010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(38..1753)
                     /gene="proS"
                     /locus_tag="PXD41_002522"
     CDS             complement(38..1753)
                     /gene="proS"
                     /locus_tag="PXD41_002522"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL6289996.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT          517 a          506 c          366 g          597 t
ORIGIN      
        1 agggcgtatt ttatacgccc aattttgtta tttataatta agcctttaca ttcgctttta
       61 agaacgcaag taagctctct ttggcgatca tctgtttttc accgctgcgg cggtttttgt
      121 attcgatttc gccgttctcg aggtttttct caccaataac caccatatgc ggcacaccga
      181 taagctccat atccgcgaac atcacgcccg ggcgttcttt acgatcatca aaaatcacct
      241 caacgccttg agcttttaag ttagcgtata actcttcagc gaatgcctgc actttttccg
      301 atttgtgcat attcatcggc acaatcgcca ccgtaaatgg cgccatttca tcacaaggcc
      361 agataatacc acgatcatca taatgttgtt caatcgcagc tgccaccaca cgggtaacgc
      421 cgataccgta acaacccatt gtcatcacta gcggtttacc gtcttcacct tgcacagtgg
      481 ctttcattgc ttctgagtat tttttgccta attggaaaat atgccctact tcaatacctc
      541 gtttgatttg aagtgtgcct ttaccgtccg ggcttgggtc gccttccacc acattgcgta
      601 aatctgcaat ttccggcaca gcaacatcac gctcccagtt cacgttaaag tagtgtttgc
      661 catcaatatt cgcaccgcag ccaaaatctg acatcaacgc cactgagcgg tcaataatca
      721 ccggaatcgg catattcacc acacctaacg agccaacacc ggcaccgatt ttggctttaa
      781 tttccgcttc atcggcaaac tcaagcggat cagccaccaa cgggtgtttt tgagctttaa
      841 tttcgtttaa ctcgtggtcg ccacgaatca ctaacgcaat taacggttgc tcttcagttg
      901 cccctttcac cactaaggtt ttcaccgttt tttcaatggc taaaccgtga ttttctacta
      961 attcattgat ggttttcgca tttggcgtat ccactaattg catttctgcc gttggtgctt
     1021 ggcgttcacc caccgcaacc gcttcggcta attcaatatt ggcagcaaaa tctgattcgg
     1081 ttgaaaatac cacatcatct tcaccgcttg aggctaacac ttggaactcg tgagaggctg
     1141 aaccgccgat agagccggta tctgcctgca ccgcacggaa atctaagccc aaacgggtga
     1201 aaatattgct gtaaacctga tacatcacat cataggtttc ttgcaggctc tcttgtgtgg
     1261 tgtggaaaga ataggcatct ttcatcacaa attcacgcga acgcattacc ccgaaacgag
     1321 ggcggacttc atcacggaat ttcgtttgaa tttggtataa attcagcgga agttgtttgt
     1381 acgaagaaac ttcacggcga accaagtcgg taatcacttc ttcgtgagtc gggccaagca
     1441 cgaaatcacg ctcgccacga tctttaaaac gtaataattc cgggccgtaa tcattccaac
     1501 gaccggattc cacccataat tccgccggct gaaccaccgg cattaatacc tcgatagccc
     1561 cgcctttgtt catctcttca cgaataatat tttccacttt tttcaacact ttgatcccgg
     1621 tcggcaacca gttgtataaa cctgacgcca tcgggcgaat cattccggca cgcaacatta
     1681 attgatggct aactacttgt gcatcattcg gcatttcttt aagggttgaa aataaatatt
     1741 gacttgtacg cattgctatt cctattcttt ttaaactttg aaacctgaaa aaatctgctt
     1801 attttaaaac aaagcggtta aattttcagg aaattttgca aaatcctata aaaaaataac
     1861 cgcttgtaag cggttatttt gttttaacta agggtatttt cttaaactgt gtatgcttaa
     1921 ttttctcgtt caatttgctc aataatctct tgccattcgg catttgcttg ttcaagagta
     1981 aaaatc
//
LOCUS       DANLXB010000272         1927 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.274, whole genome shotgun sequence.
ACCESSION   DANLXB010000272 DANLXB010000000
VERSION     DANLXB010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            61..1569
                     /locus_tag="PXD41_002523"
     CDS             61..1569
                     /locus_tag="PXD41_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6289997.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1569..1667
                     /locus_tag="PXD41_002524"
     CDS             1569..1667
                     /locus_tag="PXD41_002524"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL6289998.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1715..>1927)
                     /locus_tag="PXD41_002525"
     CDS             complement(1715..>1927)
                     /locus_tag="PXD41_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL6289999.1"
                     /translation="KTLAEKMKQELSDFDFKFIDMIAENISKQDLEPRVGKPVATVPQ
                     IFVDNNHVGGCTDFQAFVEEKFGITV"
BASE COUNT          471 a          385 c          461 g          610 t
ORIGIN      
        1 taatttacat ttaactcaat tcttttttat ataaaacttt atcagtttga ggtatttacc
       61 gtgtctaatc aatcatcaaa cgcaccgcaa agagaaacgt tctccggacg tggtgcattt
      121 attatggcgg ctattggttc cgctgtcggc ttagggaaca tctggcgttt cccttatact
      181 acttatgaaa acggcggtgg ggcttttatt ctgccgtata tcattgccct tttgaccgca
      241 ggtttaccgc tgctgttctt agattattct atcgggcata aatatcgtgg tggtgcaccg
      301 ctcgctttcc gccgtttcag ctcgaaattt gaaaccttcg gttggtggca agtgctgatc
      361 aacgtgatca tcgggattta ttatgcggtg gtactcggct gggcagcaag ttacacctac
      421 ttctcattca gcggagcgtg gggcgataaa ccggtggatt tctttatcgg tgaattctta
      481 aaaatgggcg atattactca aggcgtgagc tttgaatttg tcggtatggt tacagggccg
      541 ttaattgcgg tatggctgat tgctattgct gtgttggcta tggggatcaa aaaagggatt
      601 tctgctgcct caaacctgct aatgccgcag ttgatcgtga tgttcttagt gttggtcggc
      661 tattcattaa ccctaccggg tgctgcgaaa ggcttagatg cgttatttac cccaaactgg
      721 gaaaaattgg ctgatccaag tgtgtggatt gccgcttacg gtcaaatctt cttctcactc
      781 tctatctgct tcgggattat gattacctat gcttcatacc tgaaaaaaga aaccgattta
      841 accggttcag gcttagtggt gggttttgcg aacagtggtt ttgaattatt agcgggtatt
      901 ggcgtatttg cggcactcgg ctttatggca acggctgcag ggcaagaagt gaacgaggta
      961 gcaaaaggcg gtatcggctt ggcattcttc gctttcccaa ccattattaa ccaagcacca
     1021 atgggggcat tagttggcgt gctgttcttt ggttcactca cctttgcggc attaacctca
     1081 tttatctcgg taattgaagt gattatttca gcggtgcaag acaaactcaa ttcaggtcgt
     1141 gtgaaagcca cgctactagt cggcattccg atgatggtgg tatctgtctt gctattcggt
     1201 acaaccaccg gtttaccaat gcttgatgtg atggataaat tcgtaaacca attcggtatt
     1261 gttgcggtgg cgtttgtttc cttgattgcg attgtcacca gcgagaaatt aagcaccctt
     1321 gaaaaacacc tgaacgaagt ttcttcattc aaagtcggct ttatctggcg tttatgtatc
     1381 gttattacct ccggcgtact ggcatttatg ttattcagcg aaatcgccaa agtgtatcgt
     1441 gaaggttatg aaggctaccc aagctggttt gtaaacacct tcggctgggg aatggcaatc
     1501 ggcttagtgg tggtggctta tttgctatca aaaatggcgt ggaaaaatga accaaaagga
     1561 gatgagtaat gagttcagca gcaattatta ccatggtggt ggcaatgacg attatctggg
     1621 gcggtttact ttttgcgatt aaacgtctgc cgaaagaaga acaataattt gcaaattttt
     1681 gtataaaaaa gcccgcttgt tagcgggctt ttggctatac ggtaatccca aatttctctt
     1741 ccacaaaggc ttggaaatcg gtgcaaccgc caacgtggtt attatccaca aaaatttgtg
     1801 gtacagttgc aaccggcttg ccaacacgag gctctaggtc ttgttttgaa atattttcag
     1861 cgatcatatc aataaattta aaatcaaaat cgcttaattc ttgtttcatt ttctcggcta
     1921 atgtttt
//
LOCUS       DANLXB010000273         1927 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.275, whole genome shotgun sequence.
ACCESSION   DANLXB010000273 DANLXB010000000
VERSION     DANLXB010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.275"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            246..1196
                     /gene="coaA"
                     /locus_tag="PXD41_002526"
     CDS             246..1196
                     /gene="coaA"
                     /locus_tag="PXD41_002526"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL6290000.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1349..1888
                     /locus_tag="PXD41_002527"
     CDS             1349..1888
                     /locus_tag="PXD41_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL6290001.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          608 a          391 c          348 g          580 t
ORIGIN      
        1 ttgctgtgtc gtaagcaagt gatgtgcatt atagggaaat tttaacagcg tgcaagtgtt
       61 ttttaaaaaa atattaaaaa aagcgttctt tcgattttta aatatacaaa atgactattt
      121 tttgtaaaat acaacggatt ttctctgcat aactacggca aaataagtgc atatattgta
      181 tagttacgcc cttaatttgg tatttaatta ccttaatatt ccagcaaaaa attgagattt
      241 tggctatgag ccttgaaaaa accagcaaaa ttactccttt tctcactttt gatcgccaac
      301 aatgggctga tttacgcaaa tccgttccat tgaagctgac cgagcaagac ctaaaaccgc
      361 ttttaggctt taatgaagat ctttcattag aagaagtacg cactatttat ttaccgcttg
      421 cccgtttaat tcaatactat atagaagaaa acttaaaacg ccagacagtc ttacatcgct
      481 ttctcggcat tgaaccgcca aaagtccctt acattattag tattgccggc agcgtatcgg
      541 ttgggaaaag tacctctgcc cgtattctgc aagctctgct ctcccattac cctaaagagc
      601 gaaaagtgga tttaattacc accgacggtt ttttatatcc acttgcaacg ctaaccgaaa
      661 agaacttact caagaaaaaa ggctttccgg aatcttatga tattcacagc ctgattcgct
      721 ttgtatctga tattaaatcc ggcaaacgca atgtgaaagc tccgatttat tcacatttga
      781 cctacgatat tatcccaaat caatttaata cggtggatca acccgatatt gtgattttag
      841 aagggctaaa cgtgttacaa agtggaatga actacccgtc cagcccacat aatgtatttg
      901 tatcggactt tgtggatttt tctatttatg tggatgccga agaaagtttg ctgaaaaaat
      961 ggtatatcaa ccgtttcttg aaattccgcc gcagtgcctt tgccgaccca aactcctatt
     1021 tccaccatta tgcgagtttg tccgagcaag aagcgattga aaccgcctca acgatttggg
     1081 aagagatcaa cggcttaaat ttacgccaaa atattctccc aagccgagag cgtgccaacc
     1141 tcattttaat caaagggcaa gaccacgcca ttgaaacggt aaaattacgc aaataatatt
     1201 ttgcaaataa ttgggctttt tcgaccgctt gtaatacctt aaaatccgtt gaataccact
     1261 caacggattt tttatttaaa tcaatgctta ttcaactatt ttttggtaag ctaacgactt
     1321 tgagagtgat tgatattagg catatacaat gaacaaaaaa tttctacttc ctttaattct
     1381 ctttttggcg ttatctgtgg catttttggt tcaactcgct cgcaactcgc aaggcgatga
     1441 tccgaaaaaa ttagaatcag ccttaattgg caaaacagtt ccgagcttta atttagaatc
     1501 ggtattagat gaaaaacaga caatcgacca aaatatcgtc aaaaccggca aacctcgcct
     1561 gcttaacgtg tgggcaactt ggtgtccgac ttgttatgcc gaacacgaat acttaaccat
     1621 tttggcaaaa caaggggtgg aaattgtcgg tattgattat aaagacgaac gcccaaaagc
     1681 gattaaattc ttagccaatt acggcaaccc ttataaagcg attatttttg acccgaaagg
     1741 ctcactcggt ttagatttag gtgtttatgg tgcacccgaa acctttatta ttgacggcaa
     1801 cggcgtgatt caataccgcc acgccggcga tgtaaacgac caagtgtgga accaagtgct
     1861 taaaccgatt tatgatggat taaagtaaat gtttgtattt cctgctgaca ttaagaaatc
     1921 tataaaa
//
LOCUS       DANLXB010000274         1871 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.276, whole genome shotgun sequence.
ACCESSION   DANLXB010000274 DANLXB010000000
VERSION     DANLXB010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            33..524
                     /locus_tag="PXD41_002528"
     CDS             33..524
                     /locus_tag="PXD41_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6290002.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPHVLFADNRQIETTMKDSGKVR
                     HLEIKPDVLHDFTNMPYENESFWHVVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            550..825
                     /locus_tag="PXD41_002529"
     CDS             550..825
                     /locus_tag="PXD41_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6290003.1"
                     /translation="MEQPTEFLTKDELTDLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            785..1840
                     /locus_tag="PXD41_002530"
     CDS             785..1840
                     /locus_tag="PXD41_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6290004.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITPQHIREYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNLPSPNIG
                     MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGY
                     LHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIR
                     EQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLGHTSVQMTKTYIRKA
                     PIVTPIKESVPSSKHQS"
BASE COUNT          663 a          371 c          376 g          461 t
ORIGIN      
        1 tgttccgcaa gcggttattt tttggagaaa aaatgcaaac aaaaccgata ttagatgcct
       61 gttgtggttc ccgtatgttt cattttgaca agcaaaatcc acacgtttta tttgctgata
      121 atcgacaaat agaaaccaca atgaaagaca gtggcaaagt ccgccattta gaaatcaaac
      181 ctgatgtttt acacgacttc acgaatatgc catacgaaaa cgagagtttt tggcacgttg
      241 tttttgatcc gccacattta gttcaaggtg gagaaaatag ctggcttgtg aagaagtacg
      301 gcaaattacc ttgcaactgg cgagaagtct tgaagaaagg ctttgacgaa tgtatgcgag
      361 tgctaaaacc aaacggcacg cttattttca agtggaatga aacacaaatc cccgtttcag
      421 aaattttaaa agttattgat tgtcagccga tttatggaca caaaagcgga cgcttgaacc
      481 aaacacattg gctggcgttt gtgaaaattg agcaatccct ctaaattgag ggggttattt
      541 ggagagaata tggaacaacc gactgaattt ttaacgaaag acgaacttac tgatttaaca
      601 ggctatcgtc aaaagaaaag gcaaatcgaa tggttgaggg agcgtcacta tataattcaa
      661 gatgaaaaca agtataagcc attagtgcta tacaaagatg tctatgggca cccccgccaa
      721 caatatccag aagctcaatc cactgggaaa tggaaatcac ctgcttattt aatgggagtg
      781 aaaaatggga agaccacgca aacaacagaa tcgctactta cctgagaatt tacgtccaaa
      841 aacagttaca cgaaaatcag gcaaaactgt catttattgg ctatatcgca cgcacggaaa
      901 aacggaaatc tctctaggca caaatagaaa tgaggctttt attaaggctg ctcaactcaa
      961 tatagaaaga gaaagccaaa ctgccagaat taccttcggg cttgtagcca aacgttatcg
     1021 agatgaagtt atacctcaga aaaaagcgag cacagcacaa acagatttgt gcaagataaa
     1081 aaatctactg ctattcttta atgacgctcc tctcgaagaa atcacccctc aacatatccg
     1141 agagtatatg atttggcgaa aagacacacc tggatctgct aataacgaat tttcaatgtt
     1201 cagtcatatt tggcaatacg ctcgagagtg gggttataca aacttaccaa gccctaatat
     1261 cggaatgaaa cgctacccta tcagaaagcg tgaaatttac gttgagaaca atatatttca
     1321 gatggtatat gaagtggcag atcaggatat gagagactta atggatctcg cctatatcac
     1381 cggacaacgt cctgtcgatt tggtcaatat ccggaaagaa cacatttttg atggttatct
     1441 ccatattgtt cagcaaaaaa cacaagccaa actacgtatt gagatagtgg gaaaactggc
     1501 tgatattatc caagataggc tggagaaagc tactggaaca cacttattca gcactaagaa
     1561 aggggaaaag ctaaccgcta gaaaactagg taaaaggttc acttatattc gggaacaagc
     1621 ggtcaagaat aacccggaat acgcaaatga aataatggca ttccaatttc gggatctaag
     1681 agctaaatca ggaacagata aagccctttc tctaggtgaa gaagccgctc gccaacaact
     1741 aggtcatact agcgttcaaa tgaccaaaac atacattcga aaagccccaa tagtaacccc
     1801 tatcaaagaa agtgttccct cctcaaaaca ccagtcttaa aagacagttt cggaacattt
     1861 tgcatttttt c
//
LOCUS       DANLXB010000275         1841 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.277, whole genome shotgun sequence.
ACCESSION   DANLXB010000275 DANLXB010000000
VERSION     DANLXB010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>1841)
                     /locus_tag="PXD41_002531"
     CDS             complement(<1..>1841)
                     /locus_tag="PXD41_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290005.1"
                     /translation="FSNPLYLKLFCESLKYQGETCVPKGHKGFNHIVKSYLDGIEKRI
                     CEQIEQDIGSHLVQRAANVIAKLQLEEDKYSLDYMTVKRAICDELIVDIAETDAKKFL
                     DYLIKENVISKNAYYNRDEEYIYFNYERIGDYQKANLILKNIHNQDDFVQWLSTEQGK
                     KLYSRVGYDKGVWEALSVLLPERFDFEVFEVIDYSKEWSWFEIIVENLFWRQPEKINM
                     QKLHQFFKNSPYFNQATWINILYQLATEINHPLNIKYLHNKLYSFSLADRDEIWTAFI
                     ALESDQCPAIERLLTWCQKSSGQENIEPEALLLGAIAVSWLFTSTDKRSRNGYINALA
                     HLLWNRLEIALALFKEFIEVNDPYVMEGILSAIHGAVAYSENSSGLKALALEIDNQIF
                     NQPETEEIYPNVLVRDYARHIIEYSLQKDEYSSDDIEIIRERITPPYRSSFPQNLPTN
                     EEIDKKYHSDGQRIIIRSMTTEYGRGMCGYGDFGRYTFEAKFRNWESYKFGNLINVDL
                     LSNYACQMIFEQFGYDDKKHLEFDKETRSRYWRRDDTNKIERIGKKYQWLALYEILAR
                     VMDNFPTFSNRYADEIGLEYITNLDNFYLPKTQIKIVPPTKTDVFFQ"
BASE COUNT          607 a          337 c          245 g          652 t
ORIGIN      
        1 attgaaaaaa tacatctgtt ttagttggcg gtacaatttt aatttgggtt ttgggtagat
       61 aaaagttgtc caaattagta atatattcaa gccctatttc atcggcatag cgattagaaa
      121 aagtaggaaa attatccatc acccttgcca agatttcata caaagccaac cattgatatt
      181 tcttgccaat tcgctcaatt ttattagtat catctcttcg ccaatatctt gaacgagttt
      241 ctttatcaaa ctcaaggtgc ttcttgtcat catagccaaa ttgctcaaaa atcatttggc
      301 aagcataatt acttaataaa tcaacattga tgagattgcc gaatttataa ctctcccaat
      361 ttcggaattt ggcttcaaaa gtatatctgc caaaatcacc atatccacac ataccacgac
      421 catattcagt tgtcattgaa cggataatga ttctttgtcc atcagaatga tattttttat
      481 caatttcttc attggttggt aagttttggg gaaatgaact tctataaggt ggcgtaattc
      541 tttctctgat tatctcaata tcatctgatg aatattcatc tttttgcaaa gagtattcaa
      601 taatatggcg agcataatca cgaaccaaaa cattgggata aatttcttct gtttcaggtt
      661 gattaaatat ttgattatct atctctaatg caagtgcttt taagccagat gaattttcag
      721 aataagcaac agctccgtga atggcagata aaataccttc cataacataa gggtcattaa
      781 cctctataaa ttccttgaat aacgccaatg caatttccaa tctattccat aataaatgag
      841 ccagtgcatt aatatagcca tttctacttc gtttatcggt agaagtaaat agccaactaa
      901 cagcaattgc acccaataat agtgcttcgg gttcaatatt ttcttgacca cttgatttct
      961 gacaccaagt tagtaatcgt tcaattgctg ggcattgatc agactccaaa gcaataaaag
     1021 ctgtccaaat ctcatctcta tctgccaaag aaaaagaata aagtttgtta tgtaaatatt
     1081 ttatatttaa tgggtggtta atttcggtag ccagttgata taaaatatta atccaagttg
     1141 cttgattaaa atatggacta tttttgaaaa attgatgtag tttttgcata ttgatttttt
     1201 caggctgcct ccaaaagaga ttttctacaa taatctcaaa ccaagaccat tcctttgaat
     1261 aatcaatcac ttcaaatact tcaaaatcaa atcgttctgg caacaataca cttaatgctt
     1321 cccatacgcc cttatcatag ccaactctac tatatagctt ttttccttgt tcagtgctta
     1381 accattgaac aaaatcgtct tgattatgaa tattttttaa tattaaattg gccttttgat
     1441 aatccccaat tcgttcataa ttaaaataaa tatactcttc atctctgtta tagtaagcat
     1501 ttttactaat aacattttct ttgattaaat aatcaagaaa ttttttggca tctgtttctg
     1561 caatatctac tattaattca tcacaaattg ctctcttaac cgtcatataa tccaaactat
     1621 atttatcttc ttccaattgt aatttggcaa taacattagc tgctctttga accagatgag
     1681 aaccaatatc ctgttcaatt tgttcacaaa tgcgtttttc aataccatct aaataagatt
     1741 ttacaatgtg attaaatccc ttatgacctt ttggaacaca ggtttcccct tgatacttca
     1801 aagattcaca aaataatttt aaatataatg ggttggaaaa t
//
LOCUS       DANLXB010000276         1838 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.278, whole genome shotgun sequence.
ACCESSION   DANLXB010000276 DANLXB010000000
VERSION     DANLXB010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..932
                     /locus_tag="PXD41_002532"
     CDS             <1..932
                     /locus_tag="PXD41_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6290006.1"
                     /translation="GKIQINRNARPTGQYNLNNEELGAIKVPLIDLETQKQVDKIIKQ
                     SNDFVQKSTQSYQEAETLLLENLGLRAFQADSNPVNVKSLKESFLQTGRLDAEYYQTK
                     YEQYWNLIQSQDYVFIRDEYLHITQKPDWTKPMYQYIEIGDVNIGDGSYQTNWIETQE
                     LPANAKTQAQTGDILISTVRPYRGAVTIIGENDQDLVVSGAFTVLRRKENSVFNNEVL
                     KVLLRSELYKDWLLQFNVGTSYPVIKDNDILNLPIPKISGEIQEKIAEYIRQSNDLRQ
                     QAQNLLAQAKNNVEFEIENNSFNINELEVRGGG"
     gene            956..1690
                     /locus_tag="PXD41_002533"
     CDS             956..1690
                     /locus_tag="PXD41_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6290007.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
BASE COUNT          662 a          285 c          351 g          540 t
ORIGIN      
        1 atggaaaaat ccaaattaac cggaatgcac gcccaacagg acaatacaat ctgaataatg
       61 aggagcttgg tgcgattaaa gtccccttaa ttgatctaga aacacaaaag caggtagata
      121 aaatcattaa gcaaagtaat gattttgtac aaaaatcaac acaaagttac caagaagctg
      181 aaactttatt attagaaaat ctcggtttga gagcttttca agctgatagc aatcctgtaa
      241 atgttaaatc cttaaaagag agtttcttac aaacaggacg attagatgca gagtattatc
      301 aaactaaata tgagcaatac tggaatttaa ttcaatcgca agattatgtt tttattcgtg
      361 atgaatattt acatatcacc caaaaacctg attggacaaa accgatgtat caatatattg
      421 aaattggtga tgttaatatt ggtgatggtt catatcaaac gaattggata gagacacaag
      481 aattacctgc taatgctaaa actcaagccc aaacaggtga tattttaatt tcaaccgttc
      541 gcccttatcg tggtgcagta acaattatcg gtgaaaatga tcaagattta gttgttagtg
      601 gtgcgtttac agtattacgc agaaaggaaa actctgtttt taataatgaa gttttaaagg
      661 tgctattacg gtcagaacta tataaagatt ggttactaca atttaatgta ggtacgagtt
      721 atcctgtaat taaagataac gatattttga atttaccaat tcctaaaata agtggagaaa
      781 tccaagaaaa aattgctgaa tatatccgcc aaagcaacga tttaaggcag caagcacaaa
      841 atttactcgc tcaagctaaa aataatgtag agtttgaaat tgaaaataat tcatttaata
      901 tcaatgagtt agaagtgcgg gggggggggt agatcctgct aagccttatg gtttattggc
      961 gagatcttct tattttgcac gtttagcaga atggacttta ttagaacatt tacttgtcaa
     1021 acagcctgaa aatatttcgg tatgttcatt cggtcaatca ttcggtacaa gcggtcgttt
     1081 agatgcagaa tattaccaac ctaaatttgc aagcttattt gcacaattag ccaatttcaa
     1141 aacgatgaaa ttaggtgaga ttgttaattt acaaaaatcg gtagaaccgg gctcggaagc
     1201 ttatcaaaca gagggaatac cctttgtgcg tgtatcggat ttatctaaat tcggcatcag
     1261 ccaaacagat aaatacttac atccgaaaga ttttggcaat gttgtaagac ctaaaaaaga
     1321 cagtatatta ctgactaaag acggcacagt cggcattgct taccgtgttc cgcaagattt
     1381 gaatgtgatt acatcagggg caattgtgca tctagagctt aaaactgacg aagttttacc
     1441 cgattatttg gcgttagcat tgaattctcc tgctgtacaa ttacaagcgg aaagagatgc
     1501 gggaggctct attatccaac attggaaacc gtctgaaatt ttagatgtag tgattccggt
     1561 attacctaaa aatatccagc aaaccattag cgacaaagta caacaaagtt ttgcattgag
     1621 agtagaaagt gaagttttac tggaaaaagc taaaatactt gtagaacaag aaatagaaaa
     1681 tatgaggtaa taatgcctaa tcataatcaa gatttgaaaa aagagtggtt taataaagca
     1741 aggatagatt accactctcc ttttttaatg ttatggctca gttgtaatag ctggtataac
     1801 ttccattatt ccttaggtaa ggatagaaca catattga
//
LOCUS       DANLXB010000277         1794 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.279, whole genome shotgun sequence.
ACCESSION   DANLXB010000277 DANLXB010000000
VERSION     DANLXB010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            50..823
                     /locus_tag="PXD41_002534"
     CDS             50..823
                     /locus_tag="PXD41_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL6290008.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
     gene            967..1758
                     /locus_tag="PXD41_002535"
     CDS             967..1758
                     /locus_tag="PXD41_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6290009.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
BASE COUNT          557 a          360 c          347 g          530 t
ORIGIN      
        1 ttgttctaaa tcaaatttag gaatactttt ctaatttaag gttgaatgga tgaaaattgt
       61 atcagaacct aaaacaagcg gacgtcatac ttgcacaatt cattgtcaaa attgcagtat
      121 tagccaacta tgcttacctt ttactcttaa tgaaacggaa ttaactcaac tagataatat
      181 tattgagcgt aaaaaaccga ttcaaaaatc gcaagttatt tttaagttag gtgatgaact
      241 gcgttcgctt tatgctatcc gttctggaac attaaaagcc tataccttaa gtgaaagtgg
      301 tgaagagcaa attaccggtt tccatttacc tggcgatcta attggctttg atgcaattac
      361 caatatgcag cacgaaggct atgctcaagc actcgaaacc tcaatgattt gtgagattcc
      421 attcgatatt ttagatgatc ttgccggcaa aatgccaaaa attcgccatc aaattatgcg
      481 tttgatgagt aatgaaatta aaagcgatca agaaatgatt ctattgctct caaaaatgaa
      541 tgcggaagaa aaactagctg catttttgta taatctttcc caacgttact cagcccgtgg
      601 tttctctgca aaagagttcc gtctaactat gacccgtgga gatatcggca attatcttgg
      661 tttaaccatt gaaactatca gccgtttatt agggcgtttc caaaaaagcg gtatgatttc
      721 agtacaagga aaatatatta ttattaaccg tatggaagaa ttagccgaat tagccggggc
      781 aatcaaaccg cagcaaaata ttattgctca aactaccgct taatttatct taccaaatcc
      841 ctttttgaaa cctcgttcaa aaagggattt ctgatccgat gagccgctaa ctccatttgc
      901 ccgtttttcc tatatccgtt ataatcgaca caattttgcc ccaatcaata taaaagagga
      961 atttttatgg gtatcttaac tggtaaacgt attttagtga caggtttagc aagcaaccgt
     1021 tcgatcgctt acggtattgc aaacgcaatg aagcaacaag gtgcagaact tgcattcacc
     1081 tacttaaacg ataaattaaa accacgagtt gaagaatttg ccaaagaatt tggctcagac
     1141 attgtccttc cgttagatgt agcaaccgat gaaagcatta ctgagtgctt tactgaatta
     1201 agcaaacatt gggaaaaatt tgacggtttt gttcacgcta tcgcatttgc accgggcgat
     1261 caattagacg gcgattatgt aaatgccgca acccgtgaag gttatcgtat tgcacacgac
     1321 atcagtgcct atagctttgt tgcaatggct caagctgctc gccccttctt aaatgaaaat
     1381 gccgcccttt taaccttaag ttacttaggt gcagagcgtg caatccccaa ctacaatgta
     1441 atgtgcttag ccaaagcctc tttagaagct gcaacccgtg taatggcagc cgatttaggt
     1501 aaagaaggta ttcgtgtaaa tgcgatttca gccggcccga tccgtacatt agctgcttca
     1561 ggcattaaaa acttcaagaa aatgctttct gctttcgaga aaaccgctgc tttacgccgc
     1621 accgtaacta ttgatgatgt aggtaactct gcagctttct tatgctcaga tttagcctct
     1681 ggtgtaacag gtgaagtgtt acacgttgat gccggcttca gcgtaatggc aatgggtgaa
     1741 ttaggcgacg aagagtaatt cctataaaaa taacggactc aattgagtcc gtta
//
LOCUS       DANLXB010000278         1715 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.280, whole genome shotgun sequence.
ACCESSION   DANLXB010000278 DANLXB010000000
VERSION     DANLXB010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            9..1541
                     /locus_tag="PXD41_002536"
     CDS             9..1541
                     /locus_tag="PXD41_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL6290010.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
BASE COUNT          454 a          283 c          368 g          610 t
ORIGIN      
        1 gaggttttat gaatctagtt gattattcta cgtcactttg gtcggtattg ccggcactga
       61 ttgcgctaat attggcaatt gtgacacgca aggtgattat ttcacttagc atcggtattc
      121 tctttggtgc atttatgctt actaatagca attttcttga tgcacttact tatattaaaa
      181 atagcgttgt ttctttagtt tataaagggg ctgaagaagg attaaattca aataatgtta
      241 acattatttt atttttgctt ttattagggg tattaacgtc attattaagt atttcaggta
      301 gtaatcaggc gtttgcgaat tgggcgcaga aaaaggtaaa aggcaaacga ggcgcaaaat
      361 taatggcggc aggtttggtt ttctttacct ttattgatga ctatttccac agtttagcag
      421 taggtgcgat tgcccgccct gttacggata aattccgtgt ttctcgtgct aaattagctt
      481 atattttaga ttctaccgcc gctccaatgt gcgtgttaat gccaatttca agctgggggg
      541 cttatattat taccttaata gctggcttat tggctacgca ttccatcaca ggctattcgc
      601 cactaggcgc atttatgaca atgagcgcaa tgaactttta cgccattttt gcgatgatta
      661 tggtgttctt tgtggcatat ttctcatttg atattggttc gatggcgcgt tttgaacgtc
      721 aagcagcgca tttagcagaa ttagatgatg agcaaattga aacgaaagga cacgtgcgcg
      781 atttgatttt gccaattatt gcacttattg ttgctacagt ctcaatgatg atgaaaacag
      841 gtgcagatgc actggccgaa tcaggtgctt cattttctat actaggtgct tttgaaaata
      901 ctacggtagg catttcatta gttgttggtg gtgtggcagg gcttatagtt gcaactattt
      961 gtatcattac aagcggtaat atttctttta aaaattacgt ccgtgcttat ggcttaggtg
     1021 tgaagatgat gtctggtgca atcactattc tcttctttgc gtggacaata aacggcgtag
     1081 taagtgatat gcaaacaggg aaatatctat caggattggt tgcagaaagc attggagcag
     1141 agtttttacc tgcaattcta tttgtgttag ccgcagcaat ggcgttttca acaggaacta
     1201 gctggggaac atttggtatt atgttgccaa ttggagcctc aatggcagtg cattcagatc
     1261 cagcattaat tattccttgt ttatctgcag taatggctgg tgcggtttgt ggtgatcact
     1321 gttctccagt atctgatacc actattcttt cttcaacagg cgcacaatgt aatcatatgg
     1381 atcatgtcat ttctcaatta ccttatgctt tattagttgc aacagcttct attattggtt
     1441 acttagtggt tggctttacc caatcagcgg tattgggatt tattgctaca gctgttgtta
     1501 tggcaatact cattttgctt tttaaagaaa aaaagcatta atttccgaaa atgtgaaggg
     1561 aatcacagaa tgagatttat tgatgagata aaatagcact caagatatgg atatcgaatg
     1621 ttgtgttata taaatcttaa aataagatcc tcctagcatt agcgtacctt ttggtacgct
     1681 tttttctttt atggcaatat tatttcttgc aattt
//
LOCUS       DANLXB010000279         1699 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.281, whole genome shotgun sequence.
ACCESSION   DANLXB010000279 DANLXB010000000
VERSION     DANLXB010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            18..704
                     /locus_tag="PXD41_002537"
     CDS             18..704
                     /locus_tag="PXD41_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6290011.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            708..1226
                     /locus_tag="PXD41_002538"
     CDS             708..1226
                     /locus_tag="PXD41_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290012.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1244..1654
                     /locus_tag="PXD41_002539"
     CDS             1244..1654
                     /locus_tag="PXD41_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290013.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
BASE COUNT          591 a          276 c          334 g          498 t
ORIGIN      
        1 aaaataagga gttcctaatg gatactttgg caagtcgttt gaaaatcgtt ttagaccaaa
       61 aaggtttaac acaggaaaaa tttgcagaac aaataggtgt ttcacagcca tctgttttta
      121 aaatcctgaa tggacaaact cgaaatccca caaggattta tgaaattgca aacgtcctag
      181 atgtcgatgt aaattggctc aaaaccggca aaggcgaagc accagatttt gcgaaaatcg
      241 gaaaaaatcc gaccgcttat gaagaggaaa gctcaatgct tcgacttgag gtgttagatg
      301 tatatgcctc tgccggcaat ggtagttttg tcacgggaga cttaaccgct tacacgcacg
      361 cagtagaatt tgaaaatgcc tattttgcac aagtctttca acgtgcaaat gccaaaggct
      421 tatcaattat taatgtagat ggcgactcaa tggagccaac tatcggtaac ggtgatttgc
      481 tgttcgtaga taccactaaa tccgcttatc aaggcgatgg tgtctatgtt ttcagctatg
      541 gcgaaaactt atatgtaaaa cgcttgcagt tcgccggtga tgaattgtta gtcatttccg
      601 acaatccgct ttataaagag tggagaatca catcagaaaa tgagcataaa ttccaaattc
      661 acggtaaagt ggaatttatg caagggcata ttaggagggt ttaggtgatg gaacatcaaa
      721 atctaactca tcttgtctat attacatcac ataaacaaat tggagtttat tcgatttcta
      781 atttgaatat tgatgacctt tacttcaaag gttactgtat tcagaaaaat agagttatca
      841 cattaagagc tgatcgcatt attaaacaat ttgatgattt agctcttgcc gaaaattatg
      901 ccaaaaatat tcctcaagat gtgttttatc tatttgattc tcttctgaac cagcaacgaa
      961 aagaaaaaat aacaccgatc tataaaatcg gtttgtgttt tactggattt aagcaagcta
     1021 gaaaaaatga attaattcaa ctagcagtag ataatgattt gagagtagta caaaacgtaa
     1081 ctggtgcagt tgatttttta attttcgata aagagtcgaa aactgttgga ccagcaaaac
     1141 tagcaaaagc tgaaaagtta ggaattaaaa tcatcgatga tgaagaattt ttatatatgt
     1201 tagaaactgg cgttgtgccg gattaggttt gacttctcaa tagatgttta taccaaaatc
     1261 atctaaacta aaaactaaca attacataga agaattaaac atcaaatcaa taggggaaac
     1321 cgatatgaaa aaagcactta cactacttgc actatcacta tttgcattgc ctgtacaagc
     1381 cgatagcctc gaacttgctc gtaataaagt aaagcaaatt tttatcagtg atgaagagcc
     1441 aaaggtaaaa gatgcgactt ggactgcacc atttatcttt aaggttggag tttttgatga
     1501 cggcacgaaa agagatggct acgccgaata tgtttgccaa gttttatacg accacggatt
     1561 taaaggtaaa ggtgtgttgg ttagcgtaat cgatataaaa aaactagtcc aaacaggtga
     1621 ttgggttgat cttggcaaag ctaaatgtca gtaatacata agggacagat tattctgtct
     1681 ctttgtattt aatcattaa
//
LOCUS       DANLXB010000280         1662 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.282, whole genome shotgun sequence.
ACCESSION   DANLXB010000280 DANLXB010000000
VERSION     DANLXB010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1385
                     /locus_tag="PXD41_002540"
     CDS             <1..1385
                     /locus_tag="PXD41_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL6290014.1"
                     /translation="ANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKA
                     DQHSVTLAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGL
                     WLVSKTAADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSG
                     WTPATTFTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKIS
                     LLPSKQSEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQN
                     ISVISSNKEQQIVMTTLTEQEKVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKEF
                     VNWLKEGIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQY
                     DFQGLGLHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTHLLFGDKMLLNN
                     HCLTLQEEDT"
     gene            1425..>1662
                     /locus_tag="PXD41_002541"
     CDS             1425..>1662
                     /locus_tag="PXD41_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase SAM-like domain-containing
                     protein"
                     /protein_id="HDL6290015.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCM"
BASE COUNT          561 a          283 c          343 g          475 t
ORIGIN      
        1 ttgcaaatca gctcattccc aagtctgcgt ttgattggct gggacagtat ccagaagtca
       61 tttcttcact gatgtatgca atgtctgggc ataacgataa agccgggctt ttatctgaga
      121 tcgtgcagaa agccgatcag catagtgtta cgctagcaat cggtggcgat gtgaataagc
      181 tggtacagcg accagttaat tcattgccga agcaaattgt gctggctcta cgttatttac
      241 tggagcagaa aatcaaatta aatacgccaa aaggaccagc agacggctgg tttaccgaag
      301 atgggctgtg gctggtaagt aaaactgctg ccgataatat ccgaacttat ttactgggac
      361 aggggatttc cgtgcctaaa gataatccaa aactgtttga tgaaatgcaa tctcttggta
      421 ttgtggaaga gtctccttcc ggcggtgcaa tttggagctg ccgtatccaa gccgattccg
      481 gttggacacc ggcgacaaca tttacgctat tacgagttaa accggaggtt gcttgggaga
      541 atatcaacga tagaccggcg tattttgccg gaaaagtcaa agtgattgaa cagataactg
      601 aagaggtcaa tgcagaggtt cagcctccat tagttgaaga aaccactaaa atttctctat
      661 taccgagcaa gcaatcggag gctattattc cgtctgagga aacggaaata tcgaaggcaa
      721 ttacaagttc agacaatgca acatctgcgg aagtaatcat aaataatgaa aatgatttaa
      781 cttcttttgt attggatatg tttgctccta cagagacaat tgagcaaaat atttctgtca
      841 tttcttcaaa taaagagcag caaatcgtaa tgacaacact tacggaacaa gaaaaagttc
      901 cgccgaaaaa agttaaatta gagaaaagta agaaaaaaaa tcttcaatta accactctag
      961 aaccatggaa tgatatgatt aatccaatta ctggaaaaga attcgtaaat tggttgaagg
     1021 aggggatagc aaccaataaa tttgcaatta acaaaccttc tgcaaaatta catatagtag
     1081 atggtaattt atttttagtc acaccagtta tttttgaaat gtatttgcaa gaatgtggcc
     1141 aaccttatga taaggaaact ataaacaatc ttcagtatga tttccagggg cttggtcttc
     1201 attctcttaa aaaaaccatg actaatggta agccagatac aataaatttt tggaagtgtg
     1261 acgtgattgg tcctagaaag acttcctctt taacaggata tttgataaaa aatactcatc
     1321 tcttatttgg ggataaaatg ttactaaata accactgttt aactttacag gaagaggaca
     1381 cataatatgg attctaagat ttccttcgat atattattgg aacgattttt ttctatcgtc
     1441 attatttacg ggcggacacg aaacgaagtt ataacaatat tattcgaatt atcaaaaagc
     1501 gttatccaaa cttaaatgcg aatgatgtga ctactgatat gttaattgaa tggcgtaatc
     1561 aagttgttgg taatacaatt aaagctgtga cgtggaataa ttatgtgaga cacctaaaag
     1621 cattatataa ttttgcgata gcacaggggc tactttgcat ga
//
LOCUS       DANLXB010000281         1602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.283, whole genome shotgun sequence.
ACCESSION   DANLXB010000281 DANLXB010000000
VERSION     DANLXB010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            188..1552
                     /gene="glmU"
                     /locus_tag="PXD41_002542"
     CDS             188..1552
                     /gene="glmU"
                     /locus_tag="PXD41_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL6290016.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          538 a          318 c          339 g          407 t
ORIGIN      
        1 acctatttat accagttttc cacaagataa gaatcgacat aatagaaaaa gataacaaac
       61 agacaaattt cttttgcttg tcgatgaaat ccacttataa aaaggttaaa atattacaaa
      121 aatatcactt atagcaattt acacgttact ataagccttc atctatttag tcaaataagg
      181 attctatatg actcaactga gcgttgttat tttagctgcc ggtaaaggca ctcgtatgta
      241 ttcagattta cccaaagtgt tacacccagt tgccggtaaa cccatggtaa aacacgttat
      301 tgatactgcc aaacagctag atgcccagca aattcattta atttacggac acggtgccga
      361 tctgttaaaa gcacgtttaa gcgaagagcc tgtaaactgg gtattccaag ccgaacaatt
      421 aggcacagga catgcaatgc aacaagcagc tccttttttc gctgatgatg aaaacattgt
      481 aatgctttat ggtgatgccc ccctaatcac aaaagccact ttagagcgtt taatcgcagc
      541 caaaccggaa aatggtattg cattactaac cgttgaattg gaaaacccga caggctacgg
      601 acgaattatt cgtgaaaatg gttctgtggt agcgattgtt gagcaaaaag atgccaatga
      661 agcacagctt aaagtcaaag aagtgaatac cggcgtgatg gtagcaagcg gtgcgagctt
      721 caaaaaatgg ttgaaaaacc taaataacaa caatgctcaa ggtgaatatt acatcactga
      781 tgtgatcgca atggcaaacc aagaaggctt taaagtacaa gcggttcagg caactgaatt
      841 tatggaagta gaaggggcaa acaaccgttt gcaacttgct gcacttgaac ggttctacca
      901 aaaacgtgag gcggaaaaac tgttattggc tggtgtaact attatcgacc caagccgttt
      961 tgatcttcgt ggcactgtca cccacggaaa agatgttcag atcgatgtga atgtcattct
     1021 agaaggtgaa atcaaactcg gtaacaatgt aaaaattggt gcaggctgcg tactgaaaaa
     1081 ctgcgaaatt ggcgataatg ttgaaattaa accttattct gtgattgaag attcgattgt
     1141 cggggcaaaa tccgctatcg gtccattctc tcgcttacgc ccgggggcag aattagcgga
     1201 agaaacccat atcggtaact ttgtggaaat caaaaaagct accatcggca aaggttcaaa
     1261 agtaaatcat ctcacttatg taggcgatgc ggaaatcggc aaagaatgta acatcggagc
     1321 aggtgtaatc acttgtaact atgatggtgc gaataaattc aaaaccatta ttggcgataa
     1381 cgtatttgtc ggctcagaca gccaactcat tgccccggtc acgattgcca gcggttcaac
     1441 cattggtgcc ggtgcaacag tcactaaaga cattgcggaa aatgaactgg taattagccg
     1501 tgtaccacaa cgccatattc aaggctggca acgcccgact aaaaagaaat agtgccagtg
     1561 gtcaaaagtt attatattta aaaattggct ttgccaataa ca
//
LOCUS       DANLXB010000282         1582 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.284, whole genome shotgun sequence.
ACCESSION   DANLXB010000282 DANLXB010000000
VERSION     DANLXB010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..130
                     /locus_tag="PXD41_002543"
     CDS             <1..130
                     /locus_tag="PXD41_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL6290017.1"
                     /translation="INASNLDEKQMMWQVVIHLAFIVSALAMAYIDKMLNSGHMKH"
     gene            207..1577
                     /gene="gorA"
                     /locus_tag="PXD41_002544"
     CDS             207..1577
                     /gene="gorA"
                     /locus_tag="PXD41_002544"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL6290018.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
BASE COUNT          473 a          243 c          376 g          490 t
ORIGIN      
        1 tatcaatgct tcaaatcttg atgaaaagca aatgatgtgg caagtagtta ttcacttagc
       61 ctttattgtt tcagcattag cgatggcgta tattgataaa atgttgaatt cagggcatat
      121 gaaacattag tcttctatgc aaatttaatt tgataaagcg cttaacgaat aagttgcttt
      181 tgtttttata gatcgaggaa tagcttatgg ctaaacatta tgattatatt gctatcggcg
      241 gtggtagtgg tggtattgct tcaattaatc gagcagcaag ctatgggcaa aaatgtgcca
      301 ttattgaagc aaaacattta ggtggcactt gtgtgaacgt gggatgtgta cccaaaaaag
      361 tgatgttcta tggtgcacaa gttgcagaag cgattaacca ttacgcccct gattatggtt
      421 ttgacattac ggtaaataat tttgattatg ccaaattagt tgagagtcgc caggcctata
      481 ttgggcgcat tcatacctca tatggtaatg tgctggcaaa aaataatgtt gatgttttaa
      541 atggttttgc tcgctttaaa gatgctaaaa cattagaagt gagttatgct gatggttccg
      601 ttgaggaggt cacagcagac catattctga ttgcaacagg tggtcgtcca actgtaccca
      661 atgtgaaagg ggctgaatac ggtatcactt ctgatggtgt atttgcacta gatgctttac
      721 cgaagtccgt agcaattgtg ggggcagggt atattgcagt tgaattagct ggagtattta
      781 atagtttagg agtaaatacc catctttttg ttcgtcaaca tgctccaatg cgtaatcaag
      841 acccattaat agtggataca ttgcttgaag tattagctca agatgggatc gaattacata
      901 cacaagcgac tcctcaagaa gtagttaaaa atgcagatgg ttcattgaca ttaaaattgc
      961 aagatggtcg tgaaacctct gttgaaagct tggtgtgggc tattggtcgt gagccagcga
     1021 cagataagat taatttagag gctgctggtg ttgaaaccaa cgagcgtggt tttatcaaag
     1081 tggataaatt ccaaaatact aatgtgccaa atatctatgc tgttggtgat attattgaag
     1141 gtggtattga attaactcct gttgcagttg cagctggtcg caggctatcg gaacggttgt
     1201 tcaataataa accaaatgaa catttggatt atagcttagt accgacagtc gtttttagcc
     1261 acccaccaat aggtactgtt ggtttaagtg agccaaaagc gattgagcaa tatggggcag
     1321 aaaatgtgaa agtgtataaa tcttcattta ctgcaatgta tactgcggtt acacaacatc
     1381 gtcaaccttg ccgaatgaaa ttagtttgtg ttggggaagg ggaaaaagtg gttgggttac
     1441 atggtattgg ttttggtgtt gatgaaatga ttcaaggttt tgctgttgca attaaaatgg
     1501 gcgcaacgaa agctgatttt gacaacacag tggctattca cccgacagga tctgaagaat
     1561 ttgtaaccat gcgctaaatg ta
//
LOCUS       DANLXB010000283         1565 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.285, whole genome shotgun sequence.
ACCESSION   DANLXB010000283 DANLXB010000000
VERSION     DANLXB010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.285"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            246..725
                     /locus_tag="PXD41_002545"
     CDS             246..725
                     /locus_tag="PXD41_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL6290019.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
     gene            694..1458
                     /locus_tag="PXD41_002546"
     CDS             694..1458
                     /locus_tag="PXD41_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6290020.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
BASE COUNT          523 a          308 c          317 g          417 t
ORIGIN      
        1 ggctgggacc aacttaaatt ttccactctt atttcttcat tcgcattctt acgcaaaacc
       61 attgatgata ctggctttag agcaatttta aattatttct tcattcgtat tctttcgtgt
      121 tcttgcgttt acatcccctt attttaaggg tatatttgag ggtataacgt aaaagggtat
      181 gaaacccata cccttaaatc ccttatgatt ctgataaagc acaatgcgat tttaggtaaa
      241 tttttatggc tagagttacc acagaattaa ataacactca aatcaaaaac gcaaaggctc
      301 aaaccaaaga ctacaagcta atggacggca aggggctgtt tttgctggtt aagaaaaacg
      361 gctcgaagtt atggcggttt aggtataaaa agccgattac cggcaaagag agcgatttag
      421 gcataggcag ttaccccgaa actaccctag cccaagcaag aacgattaga gaagaatata
      481 gggcattact agcggaaaat atcgacccac tcgaacaccg ccaaagatta gaggctgaag
      541 cgttagccga aatagaaaac accttttata aagtctgctt gaaatggcgt gataaatgcg
      601 aaagccgtgt aaaaaatggc gaacttcaag ccttaacgct gaagaagaat tggcgaatcc
      661 ttgaaaagta tcttttgcct tgccgactac tctattccaa acatcacgcc aaaactagtt
      721 attaatgctt tagagcctgc taaagaaaaa ggcataggcg acacccttaa acgagcaatt
      781 aggctactta atgaagtgat gaattttgcg gtaaatgcgg acgttatcga gtttaacaaa
      841 tgccaaaatg taggctcaaa ttttagcgta gcgaaatctg aacataaccc aacgatacac
      901 ccaaaagagc tacctcaatt tttagctgca ttgcgtgatt acaacctatc atttcaaact
      961 aagatgttga ttaaatggca actattaaca atgacacgct cacgagaggc aagcgaaacg
     1021 ttgtggagtg aaattgattt agaggcgaaa acgtggacca tttcagccga aagaatgaag
     1081 atgaaacgcc ctcacgttat ccctctttca cggcaagcgg tcgaaatttt agaaagaatg
     1141 cgaaaaatca cagggaatag cccatttgtt tttcaaagcg aaatgaaacc acgccaaccg
     1201 atgaacagcc aaaccgccaa cagagccata ggcttattag gctatgccgg cactctaacg
     1261 gctcacggta tgcggtctat tgcctcaacc tatttgaatg agcagttagt caattatgat
     1321 gtagtagagg cttgtttagc tcacgttatc aaagaccaaa cccgaaaggc ttataaccgt
     1381 tctgattatt tagatcagcg tgtagatgta atgcagcaat gggcggatta tgtagaaagc
     1441 tgctcaacgg ggatttagta aatttttggc ggaatttgac cgcttgttta attagaggtg
     1501 tacaaatatg aataaccttt ctgagtttaa attacgatat atcaataacc cttattctaa
     1561 taaag
//
LOCUS       DANLXB010000284         1554 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.286, whole genome shotgun sequence.
ACCESSION   DANLXB010000284 DANLXB010000000
VERSION     DANLXB010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.286"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..226
                     /locus_tag="PXD41_002547"
     CDS             <1..226
                     /locus_tag="PXD41_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290021.1"
                     /translation="KQNKNLTDESEEQAILAYLTENIMARIEKEQPLEKTLILYSEQL
                     ASFEQKSPMALHREKFEAKPTGLAELINNL"
     gene            237..1187
                     /locus_tag="PXD41_002548"
     CDS             237..1187
                     /locus_tag="PXD41_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL6290022.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            1184..1378
                     /locus_tag="PXD41_002549"
     CDS             1184..1378
                     /locus_tag="PXD41_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290023.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
BASE COUNT          579 a          323 c          296 g          356 t
ORIGIN      
        1 caaacaaaat aaaaacctca cagatgaaag tgaagagcaa gctattctgg catatctaac
       61 agaaaatata atggctagaa ttgaaaagga acagccactt gaaaaaacat taattcttta
      121 ttctgaacag ttagcaagtt ttgaacaaaa atcgccaatg gcattacacc gtgaaaaatt
      181 tgaagcaaaa cctaccggct tagctgaatt aattaataac ttataagagg taaaaaatga
      241 gtttatccac tttcgcccac gcattaaaac tagataaaca aggtaacgtt attttatttg
      301 acgatagccc cgaagaacag gcaaaactaa ttagccgctt aaaacaaaat cgccttttta
      361 aattattgaa tttagtgcaa accaagcacg caaagggcga agcgattggg ctattcacac
      421 cgatagccgg cacaaccaac accgaaagcg gagaggaacg agagccaaaa caagcccttg
      481 cacccgctca aaaataccac tgcgaacaaa tcaacattga tagctatatt cgctatgaaa
      541 aaatcgatgc ttacaacctc gaaaacagct tagaagaacg cttaaatcag ttacttgatg
      601 acaaccttct aagagggctt ttaatggttg gctggcaagg cgtaagccgt gcagatacat
      661 caaacgcgac aaacaaccaa ctcgcccaag acgtgaaaaa aggctggcta caaaaaatca
      721 gagagggcaa gcccgaagcg gtaattaatg gagcaaccat aggcaaagag caacaataca
      781 aaagcctaaa tgctctgatt aagcagggat taggcaaaat tagcccagcg tatgcaatgg
      841 gcggagatat gatcgccatt tgtgggcggg atattatcgc tgatgatgta attcagcttg
      901 aacacaacga tttaagcgaa aacctagccg acttattaac cttatgccaa caagctaaag
      961 gcggactaaa agcggtaagt attccctact tcccaagcaa tgcgatttta atcactcgat
     1021 tagataacct ttcgctatat cttcatttaa acaatatccg ccgtaaagcg tttgatacgc
     1081 cacaaaaaga cagcgtagag acattttact ccctcaatgt ggattacatt gtagaagatt
     1141 ttaacgcctg ttgtttaatt gaaaatattg aggttattga agaatgagcc tagaaagcta
     1201 tatccaacaa gcggaagaaa tggagctttt agaaaaactc gattttgttt cagacctgtt
     1261 agaacttgag aaagtcagcg aaattgaagc ctatcgcatt ttaaccgccc acggcgaacc
     1321 taaaccccaa ccggcacaag aaaagctaat aggttgcgta gattttcttg atgactaacc
     1381 caagccccga aaggggcttt ttgcattttt gcaacaaaaa acgaccgctt gcaccctttg
     1441 aaattattgc tatcattaat aaaaaacaat aaccaaatca aatgagagta cagcaatgac
     1501 aaactataaa ctaccggcta gaaagtggta caccttagag caggcaacaa aacg
//
LOCUS       DANLXB010000285         1553 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.287, whole genome shotgun sequence.
ACCESSION   DANLXB010000285 DANLXB010000000
VERSION     DANLXB010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.287"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..179
                     /locus_tag="PXD41_002550"
     CDS             <1..179
                     /locus_tag="PXD41_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290024.1"
                     /translation="LRTTYDYLEIENKRYYVLSIHRNNIYVLGEKTKDNDEFLFFNQD
                     TLKYYRINITKMPN"
     gene            complement(233..1378)
                     /gene="lldD"
                     /locus_tag="PXD41_002551"
     CDS             complement(233..1378)
                     /gene="lldD"
                     /locus_tag="PXD41_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL6290025.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
BASE COUNT          461 a          367 c          328 g          397 t
ORIGIN      
        1 agctgagaac aacgtatgat tatcttgaaa ttgaaaataa gcgatattat gtcttatcta
       61 ttcatcgcaa taacatttat gtgctgggcg aaaaaactaa agataacgat gaatttctct
      121 ttttcaacca agatacattg aaatattacc gcattaatat taccaaaatg ccaaattagc
      181 ctatctaaaa taacaatccg cacctaaaac gtgcggattg tggctatttg agctaaagat
      241 tacttaaatc taccaaagca tctctgccga tgtcgctaat tttagcattg ctggtaagtg
      301 tcatcgccac tttcatttct ttaaggaaga tgtcgagcag gttttccaca ccggcttgac
      361 cggcggcgct aagagcgtaa acaaaggaac gcccgatcat cgtacaatct gcgccgagag
      421 ccagcattct caccacatct aagccgttgc ggataccaga gtcggcaagg attttgatct
      481 ccccttttac tgcatcggca atgcttggca gggctttggc agaagaaagt accccatcta
      541 actgacgacc accgtggttg gagacgatga taccgtccgc accaaatctt acggcatctt
      601 tagcatcttc tgggtcgaga atgcctttga tcaccatcgg gccgtcccaa aattcacgaa
      661 tccactctaa atctttccac gaaattgatg ggtcgaaatt atcggtcagc cagccgatgt
      721 agttgttcag atcaatcggt ttacccatat agtttgacac attgcctaac gtgtggggtt
      781 taccgtgaat gcccacgtcc cacgcccaaa acgggtgaac cattgcctgc aacacacggc
      841 gaatgtcttt gtatgggccg ctcattccgg agtgcatatc acgataacgt gcgccggggg
      901 tcggcatatc tacggtaaac actagcgtgg aacaaccggc ggctttggct cgttccaatg
      961 catttttcat aaagccccga tcttttaaca catagagctg aaaccacatc gggcgtttga
     1021 ttgccggtgc aacctcttca atcgggcaaa tagagacagt ggaaagggta aacggaatac
     1081 ctttgttatc tgcggctttg gccgcttgca cttcgccacg gcgggcatac attcctaatg
     1141 caccgacagg ggcgagggtc accggcatag acagtttttc gccgaacagc tcgatgccgg
     1201 tgtctagttg cgacatatct tttaacacac gttgacgcag ggcgatgtct tccaaatcgc
     1261 tcacattacg acgtaaggtc tgctcggcgt aagaaccgcc atccgcataa tggaacataa
     1321 aagggggaac acgacgtttt gccgcacggc ggtaatcgtt tgcagatgaa atgatcattt
     1381 aaaacctcat aaatcattaa gaaaaaagtg cggctattct actttaaaat aaaaataaga
     1441 attactacta tttgcaaaat atgagaaata gatcacattt ttgttacaaa ccaattagca
     1501 taaaaataca attgcacaaa aagcaaccaa caaaacaatt gattattcac aga
//
LOCUS       DANLXB010000286         1498 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.288, whole genome shotgun sequence.
ACCESSION   DANLXB010000286 DANLXB010000000
VERSION     DANLXB010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.288"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            5..442
                     /locus_tag="PXD41_002552"
     CDS             5..442
                     /locus_tag="PXD41_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL6290026.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            complement(727..1455)
                     /locus_tag="PXD41_002553"
     CDS             complement(727..1455)
                     /locus_tag="PXD41_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6290027.1"
                     /translation="MKSFDKVWFSAKELEELDLPDLPKQATNITRKALKELWIKRDAV
                     GVKGGGNEYHITSLPRKAQEALGFKSGINAIKDSIVREITPEEQNKGSELSGTVLNNI
                     ISMIDSFASIKVSAGFGSFNEGVTKPDGQEPYADSLLHTLGVNAKKCAVFWASGDSMY
                     PTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDGVELISDNREEYELI
                     KITADQAQNLQIIGQVVHIGHSLV"
BASE COUNT          432 a          294 c          263 g          509 t
ORIGIN      
        1 tcctatgtta agcttatttg atgcaggaca gcgttacctc aacactctgc cgaatcagaa
       61 aaaattagcc aattttatgc cagattacca cattattcgc ttggtaaaat tttcctctaa
      121 agtaatgcct gcttttgctt gctttgcatt agtttggcaa tattgcttta ccgatccgac
      181 ccaatctatt ttagccaatt cggtacttac tgctgttttc gccatttcta ttccgtttca
      241 agggttatat tggcttggaa aacgggcaag atcaccgtta tctttatcat tattggaatg
      301 gtatgagtcg cttagacaaa aattaatttc ggcacaagtc aaattagaag aaacacaagc
      361 ggtaccttct ttccaagatt ttgcaaattt actcaagcta gcagaagaga cttggggaga
      421 tgaatatttt gatgagttat aaaataaaaa aagccccact taaaataagt ggggtaaaac
      481 ttttgttcta attctggagg tttgaattac tgttttattg tggggtactg atcttttttg
      541 catagagaga aagaaaaaaa tttgggcgga aaaataacgg cgagccccgt gaatacaagg
      601 gttcgccgtt attgtttggt tggagctatg caaaaaacaa aatgagcagg attagaaaaa
      661 aacgagcagt ttttgcgtta ttttttgcat aggtttgatc ggttttaaaa ctattttaaa
      721 tctgttttaa actaaagaat gcccgatgtg taccacttgc ccgatgattt gtaggttttg
      781 ggcttggtct gctgtaatct ttattaactc gtactcttct cggttgtctg aaataagctc
      841 tacaccgtcc catagcagtt ttacacgctt aacccaaaca ctgtcgccgt tttgtacaat
      901 gtaaatatta ttgtcgcctc gtatctcatt acgacttaaa tcaactagta gctggtcgcc
      961 attatcaata gtcggataca tcgagtctcc acttgcccaa aaaacagcac acttcttggc
     1021 attaacacca agcgtatgca acaagctatc agcataaggc tcttgtccat caggttttgt
     1081 tacaccttca ttaaagctcc caaagcctgc agatacttta atagatgcaa aactatcaat
     1141 cattgagatt atgttattca aaacggtgcc tgataattca gatcctttgt tttgctcttc
     1201 aggtgtaatc tctcttacta tgctatcctt gattgcattt attccacttt taaatccgag
     1261 tgcttcttgg gctttacgag gcaatgaagt tatgtgatat tcattccccc caccttttac
     1321 tccaactgca tcacgtttta tccagagttc ttttaatgcc tttcttgtaa tgtttgttgc
     1381 ttgctttgga aggtcaggca aatccaattc ttctagttct ttggctgaaa accaaacttt
     1441 atcaaatgat ttcataatta accccttctt aatcaaaaat gattttaaaa tcaaaatt
//
LOCUS       DANLXB010000287         1471 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.289, whole genome shotgun sequence.
ACCESSION   DANLXB010000287 DANLXB010000000
VERSION     DANLXB010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.289"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            150..1268
                     /gene="malK"
                     /locus_tag="PXD41_002554"
     CDS             150..1268
                     /gene="malK"
                     /locus_tag="PXD41_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL6290028.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
BASE COUNT          463 a          265 c          320 g          423 t
ORIGIN      
        1 tctgaattgg cgttttttaa ataattatgg ctatggctct aaccctaacc ctaaaaaaaa
       61 gtattttagg atgatttctt ctttagataa aaaggcgact attcagccta aataaaacca
      121 acaagcaaaa gcagaaaaga ggtttagtta tggcgaatgt atcattacgt aacgtgggaa
      181 aatcgtatgg tgatgttcat atctctaagg atattaattt agaaattaac gaaggagaat
      241 tcgttgtttt cgttggaccg tcaggttgtg gcaaatctac gctattacga atgatagcag
      301 gtttggaaga tattacgaca ggagaactct atatcggtgg aaaactgatg aatgaagtag
      361 agccttcaaa acgtggtatc ggtatggtgt tccaatccta tgctctctat ccacatttag
      421 acgttgccga aaatatgtct tttggcttaa agctggcagg tgtaagtaaa gcagagcggg
      481 atcaacgagt taaccaagtt gccgaaatct tacagcttgc ccatttatta gatcgaaaac
      541 ctaaagcact ttccggcgga caacgccaac gggtggctat tggtagaaca ctggtttccc
      601 aaccggaagt atttttactc gatgaaccac tttccaacct tgatgccgca ttgcgtgtac
      661 aaatgcgggt agaaatttcc aaattacata aaaaactaaa ccgcacaatg atttatgtta
      721 cgcacgatca agttgaagca atgacattag cggacaaaat cgtggtatta aatgccggcg
      781 gtattgctca agtaggtaaa ccgttagaac tttatcatta cccggcaaat cgctttgtag
      841 cagggtttat cggctcgcct aaaatgaact ttttaccggt aaaagtgatt gcggtagagc
      901 cggaacgggt aaaaattgag ttacctgatg cgaatcatca taatttttgg attccggttt
      961 ccggcgaagg ggtgaatgtg ggagataact tatctttagg tatccgcccg gaacatttag
     1021 ttccttcgga tcaaacccaa gtgaccttac acggtattgt gcaagttgtg gaattgctcg
     1081 gaaatgaaac acaaatccac cttgaaatcc ctgaaatcaa acaaccaacc ttaatttatc
     1141 gtcaaaacga tgtggtatta gttaatgaag gcgacgatct gaatatcggt atattgccgg
     1201 aacgctgcca tttatttaag gaagacggta cagcttgcaa acgtttgttt gttgaaaaag
     1261 gggtataaca atttcagttt attactgatt ttagagggta ttttcaatct tctaatcaat
     1321 taataattaa cctaagtaaa atcaaatctt aagagaggtt ctattatgaa aaaaacagtc
     1381 ctagcagttg caatcagtgg tgcaatgttc gcagccagtg catcagcggt tgatttccac
     1441 ggatatgcac gttcaggtat cggttggaca t
//
LOCUS       DANLXB010000288         1447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.290, whole genome shotgun sequence.
ACCESSION   DANLXB010000288 DANLXB010000000
VERSION     DANLXB010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.290"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            12..335
                     /locus_tag="PXD41_002555"
     CDS             12..335
                     /locus_tag="PXD41_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6290029.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(412..1430)
                     /gene="glpX"
                     /locus_tag="PXD41_002556"
                     /pseudo
     CDS             complement(412..1430)
                     /gene="glpX"
                     /locus_tag="PXD41_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT          442 a          348 c          260 g          397 t
ORIGIN      
        1 tcaaaaataa aatgaaacta tcaagcgaac tacaaaatca gataaaccaa ctaaatcagt
       61 tacgaaaaca ggcactcaaa caagagcaag acgagcagaa attgtttgaa aaaaataaaa
      121 ttgaagattt gccacatttt ggcacgcagc ttaatgctca gaggaaacta ttaggcatag
      181 aattaaccac ccttgaaatg caaaccggca tttcaagctc taccctaaaa cgcttattta
      241 aagacccaag ccaagtgaaa tttcagacaa tttgtattgt ggcagaaaca ctcggcttta
      301 atttatgtgc aattaatact cacaaacaag agtaagcgtg acaatgtagt gattttgatt
      361 actttgggaa gacaaaaaat cgggctaaaa gcccgattta tcagagaaaa gctataaatc
      421 caataaagaa aggagttcgt tatctttacg atcgacataa tggtcggatt gaattttacg
      481 aatggttcta gatttgccac gaataagtaa ggtttcagtg ctggcaatat tgcctctacg
      541 tttaatccct tttaacaatt cacctgaagt aatgccggtt gcaacaaaga cgatattgtc
      601 atcacgcacc aaatcttcta atttcaacac cgtattcacc ggtacattca tttcattaca
      661 gcgtaaaagc tctttttcgg tagcagttaa attttccggg ctattcccct tcacttggtt
      721 gcgaggaatt aaacgtgctt gcatatcgcc acccaatgca cgaaccgcag cccccgccac
      781 taccccttca ggtgctccgc cgataccata aagcagatcc aattcgctct ctggcaaaca
      841 gcattgcacc gcagccgcaa catcgccatc aggaatcgca atcactctta cccctaattt
      901 ttgcacatcg gcaattattt tttcgtggcg aggcttagca agatagcaat ggttaattgg
      961 gaaagtaatt tgcccttttt cgaggcgaca cggcgaagat tttgttcaag cggaagattt
     1021 aaatcaatca ttcctttgca ttcctgcccc accactaatt tttccatata catatcaggg
     1081 gcttttaaaa aggtttcttt gccgcctgct gctaataccg acaacgcatt tgcctgcccc
     1141 attgcagtca tacgagtacc gtcaatcggg tcaaccgcaa tactgatttc ctcatcttct
     1201 aggcgggata gaccgatttt ctcgccaata taaagcatcg gtgcttcgtc aatttcgccc
     1261 tcaccaatta ccacttcgcc acggatttcc atttggttca gcataaaccg cattgctttc
     1321 accgcagctt catcagcggc atttttatcc ccacggccta gccaagagta agctgctaga
     1381 gccgctgctt ccgtaacacg agaaaattca aaagaaagag ttcgtttcat ttttgttcct
     1441 tagtttc
//
LOCUS       DANLXB010000289         1435 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.291, whole genome shotgun sequence.
ACCESSION   DANLXB010000289 DANLXB010000000
VERSION     DANLXB010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.291"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(139..849)
                     /locus_tag="PXD41_002557"
                     /pseudo
     CDS             complement(139..849)
                     /locus_tag="PXD41_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(753..1076)
                     /locus_tag="PXD41_002558"
     CDS             complement(753..1076)
                     /locus_tag="PXD41_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6290030.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1157..1324)
                     /locus_tag="PXD41_002559"
     CDS             complement(1157..1324)
                     /locus_tag="PXD41_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL6290031.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
BASE COUNT          355 a          315 c          259 g          506 t
ORIGIN      
        1 gtcttgtgtt taatgagagg gttgttagaa taaaacatga gagtttcctt tttgtttaga
       61 ttgatttttg acactcatat tctaaacggg aaactctcac tttttagagt gaattgtcag
      121 atcaagtctg atcttctaca gcttaattgc ctcttgattc agtaatagcg atcgtgcctt
      181 acctgattta gcgacatcat tagtcacgat tgctaccttt cttacaagat ctatcttatc
      241 ccaagtcatt gtcaaaattt ctgtccgtct ggctccagtc atcaaagcaa acttacagat
      301 agatttcatc cagtctgaac ttaatttatc tattagctgt tttgcttgtt ctttggtgat
      361 ccagcgtaca cgaattggcg gctctttctt tttcggtatg tgtgggactg catccaacat
      421 accaagttta tgagcgatat ttaatactct cgataaagat ttcacatact tattttgcgt
      481 actatgagat agaggctttt tcgtatttgc attctttttc gggatattta ggataatctc
      541 ctgagctgtt aaagagctga gttcacgacc ggcaaatttg gataaccagt attcagcatg
      601 tcgctttttt gtggctttat cttttaattc ttcggccgca cgaacgtaat ggagcaaagc
      661 atcttcaaag atatattttc tcttttcctc gagtttatcc tctgcccaca tttcttgctt
      721 gagtttatcg tgatactgct gagcttcacg ttttacaagc gtgcgagtgc ttctcttaat
      781 tctcttgccg tttggggttg tgatatcaac ccaccacgga ccgtttgctt ttcgtctgta
      841 gatcgacatt tttcattctc ctcgaccgac agagataacc ctcggtcatt atcagatcgt
      901 tttcttattg ggtcaatacc ggctctcttt tttgctcttt ccaaatcttc tcggttgatc
      961 cgccaaactt ccgagcctac cattttaaaa aatccccaat ccgccaaatg ttggcggact
     1021 gtatttggat ggcaatttaa ttcttttgcc acttgattaa tagtaagatg ttccattcat
     1081 tactttctcc aaaataaatc cctctaaacg agggattgta ctaaataatc gttaagtctt
     1141 tgccttatcc actgcatcaa ggcacagcca taccgtttcc atttggcaca ttggggaaac
     1201 ggtgagctaa taccgcacag gggaatggct caatttcaga gaaccacaaa ggcttaccta
     1261 aaccgtgcca cgctatactt gtagcttcga taccgctaca aattgagccg taggtgaatt
     1321 gcatttttta cctatcctat cgaaatactc aaattcccaa tacggacaac attttcttcg
     1381 ttggcttcta ggatttctct caacttagca taggttttgg ggcatcttat ttgac
//
LOCUS       DANLXB010000290         1417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.292, whole genome shotgun sequence.
ACCESSION   DANLXB010000290 DANLXB010000000
VERSION     DANLXB010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.292"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..220
                     /locus_tag="PXD41_002560"
     CDS             <1..220
                     /locus_tag="PXD41_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290032.1"
                     /translation="DEQSLKLQELKQTINEQTEQIKTLGTVVNKLIDALQQSQSLNVR
                     SESAVAATENQDHLTDGVQYQGPGRARA"
     gene            complement(367..885)
                     /locus_tag="PXD41_002561"
     CDS             complement(367..885)
                     /locus_tag="PXD41_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290033.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARRVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(955..>1417)
                     /locus_tag="PXD41_002562"
     CDS             complement(955..>1417)
                     /locus_tag="PXD41_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290034.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTRAFDAAVKAFENAFNAKD
                     TAENTAPVESKETEQENKQETTKLVITKPTLKGSEKQIDSANEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDNSEPKQFWLSVKYGW"
BASE COUNT          384 a          289 c          260 g          484 t
ORIGIN      
        1 ggatgagcaa tcattaaaac tgcaagagtt aaagcagact attaatgagc aaaccgagca
       61 aattaaaaca ctcggaacag tggtaaataa acttattgat gcattacaac agtcacaaag
      121 tttaaatgta agatcagaat ctgctgtagc agcaaccgaa aatcaagatc atttaactga
      181 tggtgtgcag tatcaaggcc caggacgtgc tagagcttaa ctctgttaac atctgcactc
      241 aaaacggcta tagctctagc cgttttttgt aatttttcgc acgttttaac aggcaaattt
      301 ggcaaaatta gccattgtga ttttattttc tataattaag ccccgagagg ggctttaaaa
      361 tcagtgctaa tctattgtta attttttaag aattgatgat aagttagctt ttttggcttt
      421 aaccaattcg gtcaaatcag cccaaacccc gaaagggatt ttacgttcac cagccaccca
      481 ttcgcggaca cggcgagcat cagataatct caaatctctc gctagattag actgccattg
      541 agtgccatac aatgactcgc caatgatgga tagctctttt gatgtgtaat tttttacatc
      601 gttacttaat ttgcagtatt gatagtatcc aagccaaaac gccccctgac aatcaaaagg
      661 catcccgtct ttagggtcct cgaggtcgcc tggtatttta tccattaatc ttgctatctc
      721 tccattgtta atagatagct ctctgcgact agagataaac cctatgcctc ttatagggta
      781 tctcaagatt attgtctgta cgtttgttgg cacatcgtca ccataagtag cagcgacaat
      841 ttgcccgata atgcgcataa tttgtggtgt tacttgtgta gtcataataa tctccagtta
      901 tctgtttgtt ttagccgtaa gcctttgctc ttacggctta tttgttatct caatctacca
      961 tccatatttt acggataacc aaaattgctt tggttcgcta ttatcattta gacctttaaa
     1021 tttttcgatc cactttccag cgtttgtcat tgcaaaaaaa ttatctacca ttgcttgagc
     1081 ttgagtaatt tgttcttgcg ttgctgttac tgggatagag gtatcaccaa tcttcgcaat
     1141 aaaaagattg atgatttcgt ttgccgaatc aatttgtttt tcagagcctt ttaatgttgg
     1201 ttttgtgatt acaagcttag ttgtttcttg tttgttctct tgctctgttt ctttgctttc
     1261 taccggcgct gtattttcag cggtgtcttt agcattaaaa gcgttttcaa aagcttttac
     1321 ggcagcatca aacgctctgg ttgttaatcc tttgccaagt ttgctcacta actcgcctgt
     1381 ggctaggtca atgtacaact ggtaattccg atcacct
//
LOCUS       DANLXB010000291         1393 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.293, whole genome shotgun sequence.
ACCESSION   DANLXB010000291 DANLXB010000000
VERSION     DANLXB010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.293"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>1393)
                     /locus_tag="PXD41_002563"
     CDS             complement(<1..>1393)
                     /locus_tag="PXD41_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6290035.1"
                     /translation="LKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEE
                     NRNLERMISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTP
                     KQQTALVTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCK
                     FAFFESAWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYE
                     MFKPIAEKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVC
                     FAGTYYAQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVN
                     FNEIVKLYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVI
                     TVNNEKEAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEK
                     TPSVRIIAVYHNYL"
BASE COUNT          421 a          251 c          229 g          492 t
ORIGIN      
        1 agataattat gataaaccgc gataattcga acactaggtg ttttttcctt tattggttca
       61 ttattgatta cactacacgc aaattcccaa cgattttcat aagtatgttt tgacattact
      121 tcacgtatgc ccagcatgga ctgcttatgc caataatagc tatctgtcag taatttatgg
      181 acagcaagct cagcttcttt ctcattattt acagtaataa caatgccagg gaattgtgcc
      241 gtaatagctt tagatggcgt agatacaaca ggtgtgccgc tagctagaag ttcatacaca
      301 cgtcttgaca tcattgtggt tgattgagtg atggtattaa catttaaaaa tactttaaat
      361 ttcttataca acttaactat ctcattgaaa tttacccctt ctcggataag atgagtgtat
      421 tgttcaggat aagcatattt gccacttgta tctttagatg ctctatcata aatacagccg
      481 ttgtaagcca ataatgcagg taacaacata tccatctgtt ttttacgatt ttcatgattt
      541 tgagcataat atgttccagc aaaacaaact gtttctgtat caagagaaaa tctgccaatt
      601 ggattggtta ctttaattgg ggcagcaaaa ggcaaagccc aaatatttga atgcccaagt
      661 tcttttttat atttatctac aaccaattga tctgttgtaa aaacataatc tactttttct
      721 gcgattggct taaacatctc ataatgcatt ggatcttctt tattccaaaa aatgatagga
      781 atgcttttat cttttagttt ctgaattgca tctaacaatg cttgagcatt attatgtttt
      841 aagcctggtg aagtaaaagc atagatccat gaccctttat ttgcctgcca agcactttca
      901 aaaaaagcaa atttacacgt gctgccagca atatgatcag cataagattt tctaactaaa
      961 ggataccctg taaaggcatc tgcccagcat aattcagaaa taggatccag tagtgtcaat
     1021 cctcttgtca agtcaataga ttgagatcgg gcaggtgcac ttgtaactaa tgcagtctgt
     1081 tgctttggtg tatttgcaac aggggaagat ggcaataatt tctgctgttt cttatcctta
     1141 gctaacttcc tgatttttaa taattctgaa ggcaaggata taaaaccact aaatgattta
     1201 caagcgttta ttaaagcata tcctaactga taagaaatca ttctttcaag atttctattt
     1261 tcttcaatgt tcttttgctc taacaaaata tttaatctgg atatgtcttg ctgttgaaca
     1321 tgattagttt gctcaaggct gcttacttta ttttctagct ccttgagctt tttattatgc
     1381 tcagttttca gct
//
LOCUS       DANLXB010000292         1364 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.294, whole genome shotgun sequence.
ACCESSION   DANLXB010000292 DANLXB010000000
VERSION     DANLXB010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.294"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            68..328
                     /locus_tag="PXD41_002564"
     CDS             68..328
                     /locus_tag="PXD41_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL6290036.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(378..1268)
                     /locus_tag="PXD41_002565"
     CDS             complement(378..1268)
                     /locus_tag="PXD41_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6290037.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
BASE COUNT          396 a          218 c          271 g          479 t
ORIGIN      
        1 aaatttgttt tatttgtcat aatcttgtag agtaaaaatt catttcaact cagctaagga
       61 gaatattatg ggatggattg ctgcaattat tgttggcgct ataattggtt ggatagcttc
      121 ggctgtaatg aaaagtgaag gcggactttg caaaaatatt attattggta ttttgggttc
      181 gtcacttgga cgctgggtat ttggtgatgt attaggtatt ggttccgctt atagtgccgg
      241 agactttaat atagtcggta tcttttttgg tgtattaggg gcagctcttt tgattttcat
      301 tttgagaaaa ttaagcataa ttaactaatt tcgtatttca gaaaggaagc agttgtttta
      361 taactgcttc ttttttgtta aatatactct ttttgctctt gcatcagttg tgtgaaaaaa
      421 tcaattagga ttcgcacttt aggagagaga taacgacggt ttggatagag taagctgatt
      481 tgtaaaggtt cctgtgtcaa aaaaggcata ataggaatca actctccgtt ttttagctcg
      541 tgttttatta aaaactttgg aatgttaatg atgcccaaac cagcttttgc catttgtact
      601 aacgcataac cattgttact gtaaatttta ccttgtggtt taatttgcat tttttgtcct
      661 tgttgagaaa attgccattg aggatggtat tcatagagta ggcagtctcg ttccactaat
      721 gcttctaagc ctttaggttc gccaaatcga gctaaataat ctggagaagc aactaaaacc
      781 aaatgggaat ctgcaatttt tttcgctaca atggaactat ctgcaaggct accaatacgc
      841 agcaccaaat caaagccttc tgcaatcaca tctacccgac ggtcactaaa ttcaatatga
      901 agggctaaat tagggtaatc ttccataaat ttcccaaggt aaggggcaat gaagcgagag
      961 ccaaaatcca ttggtacaga cattgttatt ttcccttgta gcgttgagtt aatattactt
     1021 acgctggcat cggcctcttt tagttcattt aaaataggca agcattgctg atagtagagc
     1081 aaccctgcct cagttggcgt aatttttcga gtggttcgtt gtagtaaacg cacattgaga
     1141 tgttcttcta actgagccac caatttactt gccatgggta acgaaatttg agcttgttgt
     1201 gctgcttgag tgaaactttg ggtttcaatt actttacaaa ataaactgat tgcgtttagt
     1261 ttatccattt tctctcttct ttatattgta atttgtgtta aggcttgcta tcgtaaaaat
     1321 agtgtctaaa aaaatcaact taaaaagaaa taatttcaaa caat
//
LOCUS       DANLXB010000293         1360 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.295, whole genome shotgun sequence.
ACCESSION   DANLXB010000293 DANLXB010000000
VERSION     DANLXB010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.295"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            216..464
                     /locus_tag="PXD41_002566"
     CDS             216..464
                     /locus_tag="PXD41_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290038.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            476..679
                     /locus_tag="PXD41_002567"
     CDS             476..679
                     /locus_tag="PXD41_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290039.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
     gene            718..1360
                     /locus_tag="PXD41_002568"
                     /pseudo
     CDS             718..1360
                     /locus_tag="PXD41_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT          450 a          194 c          316 g          400 t
ORIGIN      
        1 gtctattctt cttgtaaaga agattgtaaa aaataaaaat gtacaagatg ttattgaggc
       61 tatagttcta atagtatttg ttgtaattat aaacatcata gaggaatatc tcttatgaaa
      121 gagttaaaaa ttgaggattg ccaatttgtt tcggcaggct tgcacttgtt attgtaggag
      181 ctgttgctgg agctgcatat tatgttggga atggtatgat ttctggggaa aaaatgactt
      241 gggagagttt gggagcatca gctataggtg gggctattgg tggcggtatt ggagcaacaa
      301 tgaaagctgg tgcggtgaca gcgtcaacct tatctgcttt aggtggtggt atgggggagg
      361 gcttgtataa aagtacttct caaggtatca aaaatagtat tggtataaag gcgagttgca
      421 atcaatcagg ttcggattat ggtgatggat gtgattatca ataagagagt atattatgaa
      481 aattcaattt ccaatttctt atcaagaatt tcgtgaaaac tattttgaga aaaaaccact
      541 tttaatgaaa ggagcaatat ctcagaaaga tttactttct tggaagtcaa taaatgaaat
      601 attacctcgc tgtgatttaa tttctgagga tgcaattaag gtaatgcata aagggaaaag
      661 ggctcataaa aaagattagg ggctgtagta gattagcatc actgctatac tacaaaaatg
      721 aagataaccc attgtaaatt aaagaaatct ttgcagaaaa agcttcttga attttttgtt
      781 gctgaagtga ccgctagaac cgctgctgat ttattaggta ttcaacccaa tacggcagcc
      841 ctgttttacc acaaaattag gctggtcatt gaacaccatt tagcccttga agctcatgaa
      901 atttttgagg gaaaaattga ggtagatgaa agctattttg gtggtcatcg caaaggaaaa
      961 cgagggcgag gtgcggctgg gaaagtcgct gtattcggtt tgttgaagcg tcaaggaaag
     1021 gtgtttacaa aataccaaat cagaaacgct aatgccggtt attacaagga aaatcaagcc
     1081 tgacagctgg gtttatacgg atacctatcg tagctatgat gcccttgatg tgagcgaatt
     1141 tcatcacgag cgaatcaacc attccgaact gtttgcggag aaacaaaacc atatcaatgg
     1201 cattgaaaat ttttggaatc aagcgaagcg agtactccga aaatataacg gaattaaccg
     1261 aaaaaatttc cctttattct tgaaggaatg tgaatttcgg tttaactttg gtacaccaaa
     1321 agaacagctc aaaacgttgc gaaaatggtg tgagatttag
//
LOCUS       DANLXB010000294         1354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.296, whole genome shotgun sequence.
ACCESSION   DANLXB010000294 DANLXB010000000
VERSION     DANLXB010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.296"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            322..576
                     /locus_tag="PXD41_002569"
     CDS             322..576
                     /locus_tag="PXD41_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290040.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXD41_002570"
     CDS             776..952
                     /locus_tag="PXD41_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290041.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..>1354
                     /locus_tag="PXD41_002571"
     CDS             913..>1354
                     /locus_tag="PXD41_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290042.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILEC"
BASE COUNT          496 a          237 c          234 g          387 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtg
//
LOCUS       DANLXB010000295         1346 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.297, whole genome shotgun sequence.
ACCESSION   DANLXB010000295 DANLXB010000000
VERSION     DANLXB010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.297"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(159..452)
                     /locus_tag="PXD41_002572"
     CDS             complement(159..452)
                     /locus_tag="PXD41_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290043.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
     gene            complement(567..1166)
                     /locus_tag="PXD41_002573"
     CDS             complement(567..1166)
                     /locus_tag="PXD41_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290044.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
BASE COUNT          411 a          248 c          221 g          466 t
ORIGIN      
        1 ctcaatttga ggctctgtgc tgccctctac tatggcgtgt aaatccagcc taataccctc
       61 taaatttaca ggctcgccat ttgtttgcct aaaaaaaagg cgataactta cgtcatcgcc
      121 tctgaaaaac ttaaatttat gcttttgcat ttagacccct acactacaat ctgccccgtc
      181 tcttttaagt gcttatagat acgacctaac ataatctgcg ttggcgtttt gccaatatcc
      241 tcttttgtta gcggtgcatc tgtaatcgct ttggctgatt gagcatcaat atatttgtac
      301 tcacttgtga tgattacaaa gtttgttacc tcgccatcgg tatcatcacc tgtgccaaca
      361 acatacttag cattgagtga gccgtcatct tgagttgagt aacttgcgat agttgagtac
      421 attgggttta agattttgtt aaaagttgtc ataatttttc cttttgtgga ttgttgataa
      481 aaaaagaccg cttgtattgc tacaagcggc gatgaatgtg taatcagaat tttagttcgc
      541 ctctattaaa tgaaggcgtt taatgtttaa tagcctgtta tatctacaac cagagcatta
      601 aaatacattg cttttgaatt ataactcatt cccgtcttat acaaaccaga ataatggtat
      661 ttacagaacc caaattcaat aaaattacca cttactttgg cagatctaga tgttgaatat
      721 ccgttatcgt agttaatgac aaaatcaaag ccaaaattgg ataagataat gccatattgc
      781 ctatttgctt gccctgtaaa tctaaaaaca ttttttgatg gatttagatc gacatattca
      841 ataggtctta aaaatttgtg gtttgatgaa aatacaacat ttcctgctga gttataaacc
      901 tctatgccgt aacctccgct tttcggtaca tttgtactaa aaatgagata ttcagcaaat
      961 gttgcgtttt ctgtagctaa tgtggcaata ccattttctc gatatagcaa acatacttgc
     1021 ccatcagaat atttaatgac aataatttca tctgacgctg cctgaatagt tgcaatttta
     1081 ttagaaaagt tagctcgtcc ttttctttgt aaggataaac ttctgaaatt ttcattgatg
     1141 ttaaaagtag atagtccgta actcatttaa tatgctccat atacaatctg aatataatct
     1201 gaatcatcag ccggtagact aaaaggaaaa atacaaacaa cttctcctga aatcgtttta
     1261 tcgttgatcg aaacattttc taaatgaata agattgggaa tattcgtttt ataacctgtt
     1321 gcttgttttc ggtgaactga atgtaa
//
LOCUS       DANLXB010000296         1304 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.298, whole genome shotgun sequence.
ACCESSION   DANLXB010000296 DANLXB010000000
VERSION     DANLXB010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.298"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            174..1292
                     /locus_tag="PXD41_002574"
     CDS             174..1292
                     /locus_tag="PXD41_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6290045.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
BASE COUNT          423 a          190 c          256 g          435 t
ORIGIN      
        1 tgccgtcttt gttttggggt ttgaactatt gacattgagt tttctttttg caattattct
       61 ggcgaaaaca atgttaggcg ttttgctgat acattgtatc ttggataatt actcttacac
      121 cttaatgagg gtaattactt atcatataac atataaaatc taaggtgaaa attatgaaaa
      181 aaacattagt tgcattagca gtaaccgcgt tcgcagcgtc agcatcagca accaccgttt
      241 acgatgcaga aggttcaaaa gtagattttg atggttcttt acgtattgtt cttgatagaa
      301 caaattctaa agagctagac aatcataatg ttgttaaaac taaaaaagat gcacacacag
      361 gaatccgtaa cactggttca cgttttggtg taagagtaaa acatgattta gctcaagatt
      421 tctatgcatt aggtcgtgtt gagttccgtt ttaacaaaaa taccagtgat gatggttttg
      481 gtgatttata tactaaacgt gcttatgttg gtttaggtag taagcaatat ggtgaattaa
      541 cttttggtcg tcaagtaacg attgctgatg atttaagtca atcagtagat tacaactacg
      601 gtattaatcc aaaaggtgat tatattcaaa ccgatggtaa ccaagttatt cgttataact
      661 accgtggtgt tgaaaactta catgtaagtg caaactataa ctttgcacaa gatcgtaaag
      721 atggtaaagt attagcaaat aaacttcaaa atgcatacgg cattggtgca ttatacactg
      781 tagataactg ggatttacgt gcagcttatg gtcatacaaa ctacaaaaca gctactgata
      841 gcactaagca ccgtaaagat ggtgtattag gttctgttgg ttataaattt ggtgacttaa
      901 aattaagtgt tgatacaggt tattctcgtg agaagggttt agctgttacg gatgataatg
      961 gtgtaactac attctataat ggtgttaaat caaacgcttt ctatgtatct ccaaactttg
     1021 aatatcaagt agtgcctgca tctaaagtat atggtaacta cttatatgag cgtgtgaaat
     1081 ctaaatcaaa tggttctaca tatgctgctg gtaaagaaaa aactcatggt ttcttacttg
     1141 gtgttgatta ccaattccat aaacaagtag ttgcttttgt tgagggttct tatactcgta
     1201 ctaaagacta tgataaagta actaatggtt atgaatactc aggcaaatca actaacaaag
     1261 ctatcggtgt tggtatgcgt gtatactggt aatcaattga tttt
//
LOCUS       DANLXB010000297         1296 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.299, whole genome shotgun sequence.
ACCESSION   DANLXB010000297 DANLXB010000000
VERSION     DANLXB010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.299"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            32..751
                     /locus_tag="PXD41_002575"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXD41_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXD41_002576"
     CDS             811..1260
                     /locus_tag="PXD41_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL6290046.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
BASE COUNT          423 a          229 c          291 g          353 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa aaatca
//
LOCUS       DANLXB010000298         1287 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.300, whole genome shotgun sequence.
ACCESSION   DANLXB010000298 DANLXB010000000
VERSION     DANLXB010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.300"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            95..682
                     /locus_tag="PXD41_002577"
     CDS             95..682
                     /locus_tag="PXD41_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL6290047.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            675..1123
                     /locus_tag="PXD41_002578"
                     /pseudo
     CDS             675..1123
                     /locus_tag="PXD41_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252950.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
BASE COUNT          456 a          260 c          247 g          324 t
ORIGIN      
        1 ggaacaatcc ccacaggtat ttgaacaaat cgcacgtctt taaaatatta aattaagaga
       61 aagcactatt tgcgatgtag caggagataa aacaatgttt gatgaattaa aaatagccca
      121 agcgaccgcc tatttgctac ataaggcagg cggaacaatg gagcatatta aggtaatgaa
      181 attgctttat cttgcggatc gcttatcgtg gcaaagatac ggctattcta tttctaatga
      241 tgaatattat tcattgcctt atggaccggt attaagcaac acactcaacc taatgcgagg
      301 agaagaagcg agcttatacc aaaaaaccag tatttggggc gagtggatag cagataagga
      361 agatcacaaa atcagcctta aaaaatccgt aaataccgaa gatgaatact tctttgattg
      421 cctttcagag agcgacaccg aaattttaga agaggtattt gcgacctttg gaaattataa
      481 gccattcgcc ctagtggaat atacccataa ccctaaatac attcccgaat gggaagaccc
      541 acaaggcaga agcaagccga tttctttaag cacgcttctt actaagctag ggaaaacgcc
      601 aagcgagatc gaaagcattt tagagcaaca ggcggaaaaa gggacaatgg ataacctttt
      661 caagggctta ggcaatgctt gaaatcaaaa gacaagtaac gattcttaga ccgaccaact
      721 acggcaagga agagaaccac tacaagcatt tatatattct gcttaccgat ccgtgctttg
      781 atggtgaaac cggtaaagga gatatgattt taagtgtaaa ctgctcaagc attaaagacg
      841 ggaaagcact tgatgaaact tgtattttaa aggcaggaac acacgaattt atcacacggg
      901 acagcttcat tttctaccgc catataaaaa ttgattcgtt agatgagatt aaggcaaata
      961 tagaagccgg ttattttatt caaaagccct aattaatgat gaagcctatc aacaaatact
     1021 aaaaggcgta ctatcgtcaa aatcagtaac gcctagatat aaacgcttcc taaaaaatgc
     1081 aatccgccaa agtgcttgcc ctgatattct agccgaacct taagccgttg atgagaatta
     1141 aggccttttt tgccctttaa ccactaccaa aaccgctaat atttcccctc taaaagtggc
     1201 taacagtggg taaaaatcaa agttacccac ttaacccact tacttcccac tggctataaa
     1261 gccttatata tcaaggcttc tagcaaa
//
LOCUS       DANLXB010000299         1271 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.301, whole genome shotgun sequence.
ACCESSION   DANLXB010000299 DANLXB010000000
VERSION     DANLXB010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.301"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            208..1203
                     /locus_tag="PXD41_002579"
     CDS             208..1203
                     /locus_tag="PXD41_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6290048.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVVYR"
BASE COUNT          420 a          210 c          236 g          405 t
ORIGIN      
        1 atgaatttca tcataaatgg catttcctcc cattcctaga gttaaagggg atagatctat
       61 cggaaataga aaagacccat tggagagaac aacagagcaa agatgtaaaa gttattttgt
      121 attctcatga atcaggtcat gcagctgaac ctaaggaaat gattcccgag atattatccg
      181 ctgttgatca actgatagct agctaaaatg ctgttttatt tggtatctga ttctttaact
      241 aggctttcat tatcaaatga aagcctagtt gatcttggaa gaataacatc tataggaaat
      301 tatcctttct tgcataatgc aaagaatgct aaatttctta tggtcgaatc cgcctggcaa
      361 ggctacaaaa accgttggaa atataaaatt gcctcttatc ctgataatcc tgaacgaacc
      421 aatgaaaagt tggttcgttt agtagaaaaa gcgaaggata aaggcattcc aacggtcttt
      481 tggaacaaag aagattctgt gcattttgat cgatttattg attcggcgaa gcattttgat
      541 catattttta ccgtagatca aaatgccatt gctcgttata gggaagtagt gcctgcgaca
      601 acaaccgtca atgtcggaat gttccctgtt cagcccaaaa tccataactt tcaaggattt
      661 aattttaaac accttgccgc aaattttgta gggagttaca gtcatcatat ccacaataag
      721 cgtagagaaa gacaggatat gttgtttggt gcagcactta aagcaggtct tccggtaacc
      781 atctttgata gaaactctga tagaaaatcg gaaaattatc gttacccaaa aaatagcttt
      841 aatttaaatg ttcaacctaa tgttagttat actgaaactg ctaatattta tcgtgattat
      901 cttgtttctt tgaatattaa tactgtcgaa gattccccta cgatgttttc tcgcagagtc
      961 gttgaaatat tagcttgtgg aggaatatta gtctctacac caagtatggc tatcgacaat
     1021 atatttaaag aatattgtca tatcgtacaa agtgaagatg aggctataga attattccaa
     1081 cgtttaaaac gaggtgcttc tcgtgatgat ttgaataaag cgattgcagg ctctgaattt
     1141 gtattgagta actttacttg ggaacatttc ttatcccaaa tacagaaagt tgtatatagg
     1201 taacttaaat agcattatta aaaactctct gccaagaaat tattttctat ttcgagtaat
     1261 taattagggg a
//
LOCUS       DANLXB010000300         1241 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.302, whole genome shotgun sequence.
ACCESSION   DANLXB010000300 DANLXB010000000
VERSION     DANLXB010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.302"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            24..1214
                     /locus_tag="PXD41_002580"
     CDS             24..1214
                     /locus_tag="PXD41_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL6290049.1"
                     /translation="MCPGPTDADPRVLRAMSAPILGQFDPEFTSLMNETMEMERRLFQ
                     TKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNEILARSGADITIIE
                     REWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKICKQYDAMLIVDTV
                     ATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEIIAKRKRVEKGIRAE
                     SDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEALRIILQEGLEARF
                     ARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPALRSDILNHFGIEL
                     ATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVPSGDAVAAALAVYK
                     EADK"
BASE COUNT          378 a          259 c          263 g          341 t
ORIGIN      
        1 ttaatccctc ccctcgttta ttaatgtgcc ctggcccaac agatgctgac ccacgtgttt
       61 tgcgtgcaat gtctgcaccc attttagggc aatttgaccc tgagtttacc tcattaatga
      121 atgaaacaat ggaaatggaa cgccgtttat tccaaaccaa aaatgagcaa acttatgtag
      181 tcaactccac ctctcgtggt ggcttagaaa ctgttctaac cgcagcgatt tgcccaggcg
      241 ataaagtgtt aattcctgca tttggtcgtt ttggttattt attaaatgaa attttagctc
      301 gtagcggtgc agatattacc attatcgaaa gagagtgggg aaccgtattt gaaccagaag
      361 aaattgaagc agagttgaaa aaaggcggct ataaagcagt tgctattatt cacggcgaaa
      421 cctcaacctc tatgatgcaa ccgttagaag agatcggcaa aatctgtaaa caatatgatg
      481 caatgttaat tgtagatacc gttgcaacct taggcggtgt agatattcgt gtggatgaat
      541 ggggcattga tgcttgtatc ggcggtacac aaaaatgtat ttccgcccca tcaggcacag
      601 ctttaatcac ttataacaaa cggattgaag agattattgc aaaacgtaaa cgtgtggaaa
      661 aaggcattcg tgcagagtct gatgtagatg gcacattacc gccaattcca agtaactact
      721 tagacttggc acagctacaa gattactgga gcccacgccg tttaaatcac cacacagaaa
      781 ccacttctgc acaatatggt gtacacgaag cgttacgcat tattttacaa gaaggcttag
      841 aagctcgttt tgctcgccat attttaaacg acaaagcatt atgtgcaggt ttagaagcaa
      901 tgggtttgaa aatttttggc gatcgcaaac ataaagcccc cgttgtaacg gcattccaca
      961 ttccagaagg tatgagtggc ccagcattgc gtagtgatat tttaaaccac ttcggtattg
     1021 aattagccac ctcattcggc cccttagatg gaaaagtaat ccgtatcggt aatatgggtt
     1081 tctcaagcca aaaacgtaac gtacttttaa ccttaggtgc gttagaagcc gtacttttaa
     1141 gccataaagt aaaagtgcct tcaggcgatg cggttgcagc tgccttggca gtctataaag
     1201 aggctgataa ataaccacct tcctaaattt acaatacaac t
//
LOCUS       DANLXB010000301         1238 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.303, whole genome shotgun sequence.
ACCESSION   DANLXB010000301 DANLXB010000000
VERSION     DANLXB010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1238
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.303"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..1024
                     /locus_tag="PXD41_002581"
     CDS             <1..1024
                     /locus_tag="PXD41_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290050.1"
                     /translation="LSACGGSGSGGSSSTPNHPKPVLVPKTQNNLQAQNVPQAQNASQ
                     AQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPPVPQPQSQKIDGSFDKI
                     GSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKDFLVLNLSDINAEQLSG
                     DFLIRRSDDLFYGYYHNTNGKNLVDAADKFSQYFVVYDEKRVNDNISDKLTATYRKKE
                     GFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDGNAEIFTIKGDTKQLEI
                     TPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSDQKYLIGEAKSDNWQAI
                     MVSEKK"
BASE COUNT          447 a          237 c          229 g          325 t
ORIGIN      
        1 tttaagtgct tgcggaggaa gcggtagcgg aggttcgtct tcaacaccga atcaccccaa
       61 accagtacta gtaccaaaaa cacaaaataa tcttcaagca caaaatgttc ctcaggcaca
      121 aaatgcctct caggcacaaa atgcccctca ggcacaaaat gctcctcagg cacaaaatgc
      181 tcctcaggtg gaaaatgctc ctcaggcaca aaatgctcct caggtagaaa atgctcctca
      241 agcagaggtt actccgcctg taccacagcc acaatcacaa aaaattgacg gttcttttga
      301 taaaattggt tcagtaaaac tcaataaaga ggctcaaact cttgagctta gtagattcac
      361 tttggtggat aaattaggca caccaccgaa gtttgataaa gtaagcggta aaaaaattat
      421 tgaagaaaaa gattttctcg tattaaattt gtctgatatt aatgctgaac aactctctgg
      481 cgattttctt attcgccgta gcgatgatct attctatggc tactatcaca atacaaatgg
      541 caaaaatctt gtcgatgctg ccgataaatt cagtcaatat tttgtcgtgt atgatgagaa
      601 acgggtaaat gataatatct ctgataaatt aacagcaact taccgtaaaa aagaaggctt
      661 tgtatatggt tcaaatccac atactaaaga atttgccgca cggatcagca aattggggga
      721 tgtagaaatt aaatttgaaa atggtcaagc tcaaggaagt ataaaagacg aaaaagatgg
      781 aaatgctgag atctttacta ttaaaggtga tacaaaacag ttagagatta ccccaacgga
      841 aagtaaccga atcattatag caattttaga ccaaaatcaa aaaagctata ctccaggaat
      901 ggaaaaagca attatggaaa ctaagtttat tgattcaaag gctggtaatt ccgaccaaaa
      961 atacttaatc ggtgaagcaa aaagcgataa ctggcaagca ataatggtta gcgagaaaaa
     1021 ataaagttat cttttgctaa aaactgaaat aaaaaggctg agtccgggta atatcggcct
     1081 cagtctttta aattgtagaa aatcatctgt agaagatcaa acctaatctg acagtccccc
     1141 gttttaaatt accgtgtctg tcagattaat ttgagcttaa attcttttcc acccaaatcc
     1201 gttttccatc aagtaaggtt gccatcggtg ttctgcca
//
LOCUS       DANLXB010000302         1220 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.304, whole genome shotgun sequence.
ACCESSION   DANLXB010000302 DANLXB010000000
VERSION     DANLXB010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.304"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            203..448
                     /locus_tag="PXD41_002582"
     CDS             203..448
                     /locus_tag="PXD41_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290051.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
     gene            667..>1220
                     /locus_tag="PXD41_002583"
     CDS             667..>1220
                     /locus_tag="PXD41_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL6290052.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYV"
BASE COUNT          416 a          199 c          223 g          382 t
ORIGIN      
        1 aatagctaca attttcaata aaactgtagc tattttttat taagaattta ttttagtatt
       61 aattttatat tgcaccacac tatttcccat atctccgact tttaccagca cagaaggtaa
      121 acctctcaca gttaaacggg taggaaatga ttacgagtat tcgtatgaca aaactacttt
      181 caaaaacccg attaaaaagg cagtgaccaa cgacggttcg attatcgcca gaggctcagg
      241 ttttactact tatgccttag agttggaaaa tgatggcttg aaatatctag tcggatttgt
      301 tcaaccaaat ggaaatgcaa aagagtttat tgagccggga gcaacaattc gccgtagtaa
      361 tgatcaacca agtattggtt ctgtggattg tgaccctcgt aaaaaaatcc attataagtt
      421 tgatgttcat ttgatgaata ctttataata cctttgtggt gctagagcta gcccaagtta
      481 aaaaagacaa agctcggcag atgaacaatt gtggtgtcag agctgaccca cgttaaaaaa
      541 cacaatgctc ggtaggtaaa tcccttaggt ttaaaaaatc taagggattt ttgtttaaaa
      601 gacttgctct ttattatcag gtggatctat cataatttaa actctctaat gtgtcaggag
      661 ataaaaatgt gtaaaaaagc tttcccatta tggggcttaa tcttcggatt actgctatcc
      721 acttcagcat tctcagtgtc taaaaacttc aactatcaaa acatattgat ggaatcatta
      781 cattttagtg agaatatcga gcttagttcg ttatctaaag actggttact ttacagcgat
      841 agaaatacgt atcataaata tcaaaatgac gagtttgagt ttcaggataa aattgagcaa
      901 gctggtaaga aactacaaaa actggtggat gacagaaaat ctgaagaagc ccctattgtt
      961 ttcacaattc ctgtaaactc agaattcggg aattatgatt ttgaacaagg taagtttgag
     1021 taccaacccc tgatgaatgg gcatatgtat atttcttcta atcaatatac tgaaaatttg
     1081 ccaagaaaaa ttaatctgta tgtttctaat cccgagttta ttgacggtat acctatgggc
     1141 aaggataaag ctaaagagtt tttacagaag cgtaaaaatt ctttgggaaa cataaatcgc
     1201 tctgttatat tgtatgttga
//
LOCUS       DANLXB010000303         1190 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.305, whole genome shotgun sequence.
ACCESSION   DANLXB010000303 DANLXB010000000
VERSION     DANLXB010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.305"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..695
                     /locus_tag="PXD41_002584"
     CDS             <1..695
                     /locus_tag="PXD41_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL6290053.1"
                     /translation="FGKKQKSIYNLDTVKNYDFTTVFPKQVHFADYLNYAIFADFLEK
                     NQVNYNLNIPNELSSFANTLWQEKKIRLLLNPQGSMREISTQELSELLSMIDKRYVQH
                     ISCLLTNTTNSAEYLSKIKAPFEISLAPNSDILGYCALVNSADIVIAVDGGGVHISCA
                     LGKKLLSFYANHPANIARWYPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNH
                     QFAKLIEKYTAC"
     gene            complement(750..962)
                     /gene="rpmE"
                     /locus_tag="PXD41_002585"
     CDS             complement(750..962)
                     /gene="rpmE"
                     /locus_tag="PXD41_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL6290054.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
BASE COUNT          407 a          208 c          204 g          371 t
ORIGIN      
        1 acttcggtaa aaaacaaaaa agtatttaca atttagatac agtaaaaaat tacgatttca
       61 ccactgtctt tccaaagcag gttcattttg ctgactatct caactatgct atttttgctg
      121 attttttaga aaaaaatcag gtcaattata atttaaacat tcctaatgaa ctaagcagtt
      181 ttgcaaatac gctatggcaa gagaagaaaa ttcgattact attgaatcct caaggtagta
      241 tgcgtgaaat ttctactcaa gaattatcag agctattatc tatgattgat aaaagatatg
      301 ttcaacatat tagttgtttg ctgaccaata caaccaatag tgccgaatat ttgtcgaaaa
      361 ttaaagcccc atttgaaata agcctagcac ctaatagtga tattttaggt tattgtgcat
      421 tagtaaactc tgctgatatt gtaattgcag ttgatggagg tggtgtccat atttcttgtg
      481 cattaggcaa gaaattgctc tcattttatg ccaatcatcc agctaatatt gcacgctggt
      541 atccaaaacc taagaaagat gttgaaactt ttatggtgat cgcagataaa tggaccgagg
      601 ataataatga tactcgaggt ttttctctgg tagctcctgc aaaatggtta aatcaccaat
      661 ttgcaaaatt gatagaaaaa tacaccgctt gttaattcga tatataagaa aaacaaaacc
      721 ccgcattagc ggggtttgca ataatcaaat tattttgagc ttgggatgct gaaacgtttg
      781 ttaaagcgtt caacacgacc accggtgtca acaacacgtt gtttaccagt atagaacggg
      841 tggcagttgc cacatacgtc taagtttaaa tctttaccca ctgttgagcg agttttaact
      901 acattaccgc aagagcaagt tgccgtaatt tctttatatt ctgggtgaat accttgtttc
      961 attggggaac ctcataagaa gccatatcgc cgcctatctt gttagaatct ctaccgctga
     1021 taggtaccat atgtaattaa taaaaatgtt gagcaaatgc tcaacgccaa aaagagtgcg
     1081 tattttagat aaatttgttg cctagatcaa ctactaaaca ttcgctttat caagaaaata
     1141 ttgtattagg aaaaaaccgt ctattaaaat ccaatcaaaa caaatcacaa
//
LOCUS       DANLXB010000304         1181 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.306, whole genome shotgun sequence.
ACCESSION   DANLXB010000304 DANLXB010000000
VERSION     DANLXB010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.306"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..1043)
                     /locus_tag="PXD41_002586"
     CDS             complement(<1..1043)
                     /locus_tag="PXD41_002586"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL6290055.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFF"
BASE COUNT          334 a          237 c          252 g          358 t
ORIGIN      
        1 tcaaaaaagt cataatcaac caaaaaggca tcgtgtccga aatcggagtg aaactcgtgg
       61 aactccaaat ttacgcctgc ctgttctaat ttttgtttgc tcttatacac gtcaacttgc
      121 ttgaatagtt ggtcgcttgt taccgctaca aaagtgtagt tggctttaat acgttttagg
      181 gcggtttctt cattttcata gccaagagcc gggtcgtata aatctaatgc tcggagtaaa
      241 cggaggtaag tgttggcatc gaaacgacct aaaaatttcg tgccttgata gcttaaatag
      301 gattccactt ggaaatggtc gccccaaatt tgtccttgct gtttggtttc tcgtccaaag
      361 gctttagcaa gttgaatatc agtacggtaa gtcagcatac cgagcatacg ggcgattttt
      421 aagccgttat caggtgcaat gccatcataa tagttcccac cgttaaagtg tggatcgtta
      481 ataatagctt ggcgcataac gtggttaaaa ccgatagcct cggcacttag ggtaagtgac
      541 gaacaaagat ttataatgtt gcgaacttta tcagggtaac taatacccca ctgtgttgct
      601 tgcattccgc cgaaagatcc ccctaccact gcgtgaagtt gagggatttc taaatagtcc
      661 aataatgctt tttgtacatt aacaatatct tgcactgtaa taattggaaa caaactaccg
      721 taaggtttat tggttttagg gttaatcgaa gctgggccgg ttgtgccttt acaaccgcct
      781 aatacattac tgcaaataaa gaaatattta tcggtatcaa acgcaagccc tttgccgatg
      841 aaatcttgcc accagccttt ctcggttggt gagtcatagt aaggcttagc atcaccggta
      901 agggcgtggc aaagcaagac cgcattgctt ttctctgcat ttaatctgcc gtaagtctgg
      961 taagccactg tgatagggga cagttcgcct cctaatgtga gtggtaaagg tacgtcctca
     1021 aaaagggtaa tctgctgagc cataaaaatc ctgtttgcaa aaaattctgc ttttttgacc
     1081 gcttgttgta atgaccgtta aattagcggt gttcatttca attgtcaaga atttttagac
     1141 gtctaaacgt ctagattttt aaacggctaa aatcaaaatt t
//
LOCUS       DANLXB010000305         1176 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.307, whole genome shotgun sequence.
ACCESSION   DANLXB010000305 DANLXB010000000
VERSION     DANLXB010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.307"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..673
                     /gene="purU"
                     /locus_tag="PXD41_002587"
     CDS             <1..673
                     /gene="purU"
                     /locus_tag="PXD41_002587"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL6290056.1"
                     /translation="FNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDL
                     LMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEY
                     SPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATA
                     HFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKN
                     KTIIL"
     gene            complement(710..>1176)
                     /locus_tag="PXD41_002588"
     CDS             complement(710..>1176)
                     /locus_tag="PXD41_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6290057.1"
                     /translation="KFYSKDVINQYYKYRLEAAKQLVQEGKVNQLLLSGDNKTPYYNE
                     PKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPFTIISQKFHCERALFI
                     AKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEPESLEDIRSK"
BASE COUNT          371 a          227 c          203 g          375 t
ORIGIN      
        1 ttttaatgat gaaaccttac tcactgattt aaaatttacc ttacctgaag gctcaagcta
       61 taaattactc cctaaacaaa gaaaacgtat cgttatttta gttaccaaag aagcacattg
      121 tttaggtgac ttactgatga aaaattacta tggtggatta gatgtagaaa ttgctgccgt
      181 gattggaaac cacgaaacat taaaaagttt agttgaacgt ttcgatattc cattccattt
      241 agtcagccac gaaaatttaa cccgagtgga acacgataaa ttattagcgg aaaaaattga
      301 tgaatattca cctgattata ttgtgttggc taaatatatg cgggtgctga atccggaatt
      361 tgtcgctcgt tatccaaacc gagttgtcaa tattcaccac tcgttcttac ccgctttcat
      421 tggtgcaaaa ccttatcatc gtgcatacga acgtggagtg aaaattatcg gtgcaaccgc
      481 ccattttgtg aatgatgaat tagatgaagg cccgattatt atgcaaaatg tgattaatgt
      541 tgatcacacc tacaccgcag aggctatgat gcgtgccgga cgtgatgtcg agaaaaccgt
      601 acttagccaa gccttagaat tagtgcttgc tgacaaagta tttgtatata aaaacaaaac
      661 cattatttta taagcaaaat agccggtcaa cattatctga ccggctatct catttagaac
      721 ggatatcttc caatgattca ggctctttac ctatcaacaa actaaaaacc attgccgatc
      781 tggctaaaat ttcccgcatt cgtacctgat aagccccctc tggatatgta gcggcataac
      841 aaattgcatc aatatcccta aattttgcaa taaacaatgc cctttcacag tggaattttt
      901 gggagataat cgtaaatggc ggtaatttat atactttttt agccctaatt attgaataaa
      961 aagtggtata ccccgcataa tcctgcttaa tttttgaagt cgcaatcccc attttaagta
     1021 gatcacttgt cattgttttt ggctcattat agtacggcgt tttattatct ccacttaaca
     1081 aaagctgatt gacctttcct tcttggacta attgcttagc ggcttccaaa cgatatttat
     1141 aatattggtt aatcacatct ttagagtaaa attttg
//
LOCUS       DANLXB010000306         1132 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.308, whole genome shotgun sequence.
ACCESSION   DANLXB010000306 DANLXB010000000
VERSION     DANLXB010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.308"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..223
                     /locus_tag="PXD41_002589"
     CDS             <1..223
                     /locus_tag="PXD41_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290058.1"
                     /translation="AALIEKIKTLGAWAKVQQSAWYLHTSYSSKEVLEMLSTVTDYND
                     SLFVAQLSEANWRGLSNEVSKFIQEQWWK"
     gene            complement(226..477)
                     /locus_tag="PXD41_002590"
     CDS             complement(226..477)
                     /locus_tag="PXD41_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290059.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENGLSDEDKYHIKQA
                     VLKAVENGCLDPEMLASRCCSAIETINKSGINTGNGSCE"
     gene            complement(930..>1132)
                     /locus_tag="PXD41_002591"
     CDS             complement(930..>1132)
                     /locus_tag="PXD41_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290060.1"
                     /translation="KDYILCGRKEKRTSDFINVFEVFENETTQEFVIERAMFRNGKLI
                     DWNQSDKMNAEQAQQLWQAYIH"
BASE COUNT          295 a          249 c          202 g          386 t
ORIGIN      
        1 cgcagcactc attgaaaaaa ttaaaactct tggagcttgg gctaaagtac agcagtcagc
       61 ttggtatctt catacttcat attcctcaaa agaggtttta gaaatgctaa gcaccgtaac
      121 tgattacaat gactctcttt ttgttgctca attatccgag gctaattgga gaggattatc
      181 caatgaggtt agtaaattta ttcaagaaca atggtggaaa tagacctatt cgcaacttcc
      241 attacctgta tttattccgc ttttattgat tgtttcaatt gcagaacaac atcgtgatgc
      301 aagcatttct gggtccaagc aaccattttc tacagcttta agtacagcct gtttgatatg
      361 gtatttatcc tcatcagaca ggccattctc tacaaccttt aattccaaat ctttagggct
      421 tcctagttgt tcatttaaaa taacaacttt cgcaatttca aaatttttgt ttttcataat
      481 tacctcgtgt ttaaattatt ccaaaaccca ctcataatag gctttggaat aaatgcgtgt
      541 ctgcccacgc cgtcgcccgc cctgcatttc gcctgttcag tcgggtgctg tttgtatccg
      601 tacttactca aacttgagat aagcgtgatt gcttaggact gataccagtg ttgccttttc
      661 agctctccac accttgcgag tgtgttgcct aaaccttgcc acctctgttt ggcaagtcgt
      721 tcaaatttgt atgtcagggt ctaaccaacc ttgccgagtg ataaagcatt actttacaac
      781 tgctcgaggt tgttaatatc gtccgcacaa gcactaaatt gttaaagaac atcccacagt
      841 ctctgcttat ctctcggcta ttgcctgcta tgtgggctag gtctagaacc tttattcaag
      901 ccctcagtaa agggctttga taaaaattct tagtgaatgt aggcttgcca aagttgttga
      961 gcttgttctg cgttcatttt gtcgctttgg ttccagtcga ttaacttgcc atttctgaac
     1021 attgctcttt caatcacaaa ctcttgcgtg gtttcatttt caaagacctc aaacacattg
     1081 atgaaatcac tagtgcgttt ttctttacgt ccgcataaaa tgtagtcttt gt
//
LOCUS       DANLXB010000307         1116 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.309, whole genome shotgun sequence.
ACCESSION   DANLXB010000307 DANLXB010000000
VERSION     DANLXB010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.309"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            26..304
                     /locus_tag="PXD41_002592"
     CDS             26..304
                     /locus_tag="PXD41_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6290061.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            349..>1116
                     /locus_tag="PXD41_002593"
     CDS             349..>1116
                     /locus_tag="PXD41_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6290062.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT          358 a          211 c          278 g          269 t
ORIGIN      
        1 aaatagataa aaagaggtgt atcgaatgag tgtattaaac gatgttaaaa aaaccgcaca
       61 gagagattgg cataaagccg atattcttgc ggaacttcgt aaaaaaggtt ggtcacttcg
      121 ttctttggct aaagcaggca atgttagcca taacacgctg aagtctgttt tagacaagcc
      181 ttaccccaaa atggaacgct tagttgcaaa tgccataggg gttgcccctg aagtgatttg
      241 ggctgggcga acagcagaac gcattgaacg taatcggcga ccaactttaa ctaataagtt
      301 ttaatcataa atgatcttta acgtaaaaga tataggagaa gaacatttat gagcgaatta
      361 agtttaaaaa cgcactattc agtggctgaa ttgttaagtt ttaagttatc tagcctacca
      421 agtgctcata aaaatgtgct tgagaaagca ataagggaaa actggcaatc tcaaaaacgc
      481 aaaggcagag gcggcggggt tgaatatgaa ttaatcagtt tacccaccga agtccaacag
      541 gaaatccgca ccaagttact caaacttctt cctgctgaaa tcagcaaagg cgaattgagt
      601 gtagtgcgac aaaacattga tttggagcag ataaccgata aacaactttc tacggcagat
      661 gctcgcatta tggtggtgcg gtggttcttg atgcaggaag tgcagttggg gctaagccgc
      721 acaaaaacgc tagaccaagt cattgcagcg gtggcaagca gtgaaattcc tgctgaaatt
      781 tgcaaagcga ttatggcggg caatagtaaa gccggtggaa agttaaagct atctaaacgc
      841 accttgcata gttgggtgct ggcgtatgag gcaggcgaaa attcagcgga acggttaaaa
      901 cagatgatac cgctgaaaac acaaaaacgt gccgtgcccg agcggtgtgg ttggttgcaa
      961 gcctttctgc cgttttatca aacctttagc aatgtggcac tcacacaggc ttatgctcaa
     1021 tttgcaatgc agtatgaggg cgaagattta cctacagaga gccaagttcg gtatgccttg
     1081 aagcagttgc ccgattatgt ggtgcaacaa gggcgg
//
LOCUS       DANLXB010000308         1109 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.310, whole genome shotgun sequence.
ACCESSION   DANLXB010000308 DANLXB010000000
VERSION     DANLXB010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.310"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            12..1010
                     /gene="pyrD"
                     /locus_tag="PXD41_002594"
     CDS             12..1010
                     /gene="pyrD"
                     /locus_tag="PXD41_002594"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL6290063.1"
                     /translation="MRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQVMGL
                     TFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDAEGII
                     NRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQYADY
                     VAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDLTDEE
                     IVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLISKLSA
                     ELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQLNS"
BASE COUNT          345 a          189 c          247 g          328 t
ORIGIN      
        1 tgtattccct gattcgtaaa ttactttttg cactagatac ggaaaaagca catcaattct
       61 ctattcaggc acttgcttta gccggaaaat cgcctttttc gattctgcca acacccgata
      121 atccgaccca agtaatggga ctcacgttta aaaatccaat agggcttgca gccggagcgg
      181 ataaaaacgg tgaagcgata gatggttttg ggaaattagg atttgggttt attgaggttg
      241 ggactattac tcctctcgct caagacggaa accctaaacc gaggcaattt cgtattgtag
      301 atgcagaggg aattattaac cgcaatggat ttaataataa aggcgttgat gttttagtag
      361 aaaatgtaaa aaatgcaacc tatagtggta ttttaggtat taatattgga aaaaatgcgg
      421 ttacaccaat tgagcatagc tttgatgact accaaatttg tttgcgtaag gtttaccaat
      481 atgctgatta tgtggcggtg aatatttcat cacccaatac caaaaatttg cgcagtttac
      541 aatatggtga ggcattagat gatttgctgc gaaacctcaa aaatgagcag gcacaacttt
      601 cgcaaaaaat ggggaaatat cgaccgcttg ttttaaagat tgcgcctgat ttaaccgatg
      661 aagaaatcgt ttctgtagcc gatagtctta ttcgttacca aattgatggg gtgattgccg
      721 gcaatactac cttgtctcgt gaaagtattg ccggattacc gtattcggaa caactgggtg
      781 gattaagtgg caagccatta cactcattaa gtacaaggtt aatttcaaaa ttatctgccg
      841 agttgggcga gagaatacca attataggtt gtgggggagt ccattcgtta gagagtgggc
      901 aggagaaagt gaatgcaggt gctagtttat tgcaagtcta ttccgcaatg atttaccaag
      961 gaccatcatt aattcaaacc ttagccaaac accttcagct gaacagttag ggatagattt
     1021 ctagttaaaa atgattggtt aggtttattt ctgtcatctt agtggaatag atggcggtat
     1081 tagctatcta tcaaaaatag acaaaattg
//
LOCUS       DANLXB010000309         1093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.311, whole genome shotgun sequence.
ACCESSION   DANLXB010000309 DANLXB010000000
VERSION     DANLXB010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.311"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..192
                     /locus_tag="PXD41_002595"
     CDS             <1..192
                     /locus_tag="PXD41_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6290064.1"
                     /translation="PQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSESYT
                     VDGESVRDIQLNALRKVNE"
     gene            192..560
                     /locus_tag="PXD41_002596"
     CDS             192..560
                     /locus_tag="PXD41_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290065.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            590..778
                     /locus_tag="PXD41_002597"
     CDS             590..778
                     /locus_tag="PXD41_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290066.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            831..>1093
                     /locus_tag="PXD41_002598"
     CDS             831..>1093
                     /locus_tag="PXD41_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290067.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          348 a          216 c          274 g          255 t
ORIGIN      
        1 cctcaagacg gttcggtaat tgattgggat aacattaaaa atgcgaagct cactaaatac
       61 ccgttagaca atagcgaaaa acgcacctct tatttaggct gttttactac cgatgtgagc
      121 gagtcttaca ccgttgatgg tgagtcggtg cgtgatattc aactcaacgc attgcgtaag
      181 gtgaatgaat aatgaaaatc actttaaatc ttggcattga atataacggg aaaattcgcc
      241 gtgattgtac ggtgcgattg ctgacgatgg gcggtcaatg cacggctcaa gaaatgattg
      301 cggatttagg gtttgaggaa aactcggaag ccctatcaaa gcgtgaacaa accttggtcg
      361 atatggctta cctttcgcag caagttacct ttgatggtat ttatcaaggt aatgtgacgg
      421 ctcaattttt atttgacaat ttagctaccg aagactactg gcagttgatt gaggcaacgc
      481 tcacactccg aaaaaagcgg ttagaaaatg gggtgagcca aagcgagagc gaaagcccgg
      541 caaatcccga tttggcgtag cagaagcctt taagcagtac cgacaagcgg tgattttact
      601 ctcaaaattt gcaattaccg ccgagcaggt atggcaaatg ccgttgcttg aggtatttgc
      661 gtggattgag agctacttgg agagtgaggg cgtaaaaaca ccgcatagcc caatgggtgc
      721 gaatagcgaa gtgaaacgcg aaagctatgt ctttactcgg tgtggcaaaa ttgaataggg
      781 gcgaaagccc cttttttgta ctttaaaatg agtttaaaga gactttaaaa atggcaaaaa
      841 atatgaaagt gcaactggaa ttgacggcaa aagatactgc ctccccagtt ttaaaccaag
      901 ccgctaaaac cgccgaaaaa gcctttaaaa atacagagcg agcggcacaa aaaagtggca
      961 atgctcaaac gcaagcagca cagaaagcag cgaatgctac agaaagctca aatcggaaaa
     1021 tagaacagag ttaccgtaat gcccgccgag tggctgccga tgtgagccga gcccgtgaaa
     1081 cattaggtgt tcg
//
LOCUS       DANLXB010000310          979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.312, whole genome shotgun sequence.
ACCESSION   DANLXB010000310 DANLXB010000000
VERSION     DANLXB010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.312"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            134..820
                     /locus_tag="PXD41_002599"
     CDS             134..820
                     /locus_tag="PXD41_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290068.1"
                     /translation="MAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGT
                     TISGGTISGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSK
                     TYSETKNSFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSETFYGSGSNRTPT
                     TITLPSVIDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAII
                     SSTNGSSYQL"
BASE COUNT          344 a          178 c          202 g          255 t
ORIGIN      
        1 cccttggcaa aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt
       61 tactgctcaa caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat
      121 tgcagctcga aatatggcag caaactcgat taatgcaagt catattgtgg ggagttcgat
      181 cactgcggat aagctaaatg taaacaattt agcggcaata tcggcaaatc ttggtaaggt
      241 aactgctggt acaattacag ggacgacaat tagtggtggg acaatttcag gtacaacaat
      301 tacaggggga ataattaaag gagcaagaat tgagggatta acaggtaaat ttactggaga
      361 acttgaaatc aaccaattga tcggaggtaa tatctatgag gctaaaactt ggacatcaaa
      421 agcaacaggg aaaagtaaaa catattcaga aacgaaaaac agttttgcat taagtgatac
      481 atattatgag tatgtatgtc aatttgtact acctgctaca aaagcgacga gaacattgta
      541 tgttgtccac actccaacag gagagagtaa aagcgaaact ttttatggta gtggtagtaa
      601 tcggacaccg acaacaatta cattaccgtc tgtaattgat attagcaata ctatttcacc
      661 taatgtatct aacccattta atgattctgg ggcaatactc attgctaata ctcaatatgt
      721 agtaacgtgt cgtgcgtggt gtgcagggcg tgggagaagt gctaaagtga attttcgagc
      781 aattatatca tctacaaatg gttcatctta tcaattatag gaggcaaata tgaaaaaaat
      841 tatactactt acaacaatta tggtttcagc ttgtacaact caatataagc aagactatac
      901 aacaaaacca accttttgtt atcaactagc ccctcaagag caattaccgg ggaaaaactg
      961 tattggctca ggagggcat
//
LOCUS       DANLXB010000311          965 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.313, whole genome shotgun sequence.
ACCESSION   DANLXB010000311 DANLXB010000000
VERSION     DANLXB010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.313"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            224..965
                     /locus_tag="PXD41_002600"
                     /pseudo
     CDS             224..965
                     /locus_tag="PXD41_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          343 a          167 c          152 g          303 t
ORIGIN      
        1 ggactcctct aatagtccac tcttgttcca ttttggaaca tttttgtata ttatttcgcc
       61 ttttctttct cattgtgttc tatgtaggca acagcatttt ttgcaaagtg atcgacgaga
      121 acattcatta cttcagtcca ttttacaggt cttcctatct tcattccaac ttccatcgct
      181 aatctttcta tcttgagttt tttctctaat ttaatattga acagagcttt atgaaatggt
      241 tgatatagaa caaacgtcag ttgattggat tgatgtaact tattcagctc atattgattc
      301 ggaatctatc caaaaacaac ttatctcttt tttccaaaac atccatttag gacaaacacg
      361 tcgtacaaga cataacaaag aatatgacac aacggcagaa tggaattcag gttcagaaca
      421 ccgtatttta aaagtttatc taaaaggtaa tgaagttcaa aaaagactac aagaagccca
      481 gcacgacttc aaaaaatcac caagtaaaaa gtatctgcaa aactcaattc aagtattaag
      541 taatccaaat ctcattgaat tttcaaaaaa atgtgttcgt tttgaagcaa gattaaaaca
      601 acgttattta gataaacatc aaatcccacg caatttattt gacttaatta aatatcagag
      661 agattacgaa gagcagggta gaagcctgat taaagaccta tggcaagacg cattcaaaga
      721 cattattaag gctgtcgggg aaagcaatat gaatatttac aacagagatc aaattcagcg
      781 tttattacgg aaaaattatt tttcaatcac tccaaaagga aatatgagct atgcaaaggc
      841 tgatcgttta ttcagctttt ataagaattt actaagtgat ggctatagag aaacgctaga
      901 ttctatgcca agaaacacat tttggagata tgaaaaggat cttatggccg ttggtttaac
      961 taaaa
//
LOCUS       DANLXB010000312          938 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.314, whole genome shotgun sequence.
ACCESSION   DANLXB010000312 DANLXB010000000
VERSION     DANLXB010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.314"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            57..683
                     /locus_tag="PXD41_002601"
     CDS             57..683
                     /locus_tag="PXD41_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6290069.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            732..>938
                     /locus_tag="PXD41_002602"
     CDS             732..>938
                     /locus_tag="PXD41_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6290070.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          316 a          173 c          211 g          238 t
ORIGIN      
        1 agaaaaataa agaacataaa tcccctttat tttggctata attgtaatgg tgagtcatga
       61 ctaaaattaa attttacggc aatttaaaaa aatttggtag tgaatttagc ttagaagtta
      121 aagatactgc cgaagctatc cgagccttat gtacacagat tagcggattg cgtgaggcat
      181 tacgagacgg tgtttataaa gtccgtatcg gcaaacagta tttagacccg tcagcccttg
      241 aaaaagggct tttttattgt ctgaagaaag ggcaaaccat tcattttacc cctgttatca
      301 aaggagcgaa aagcggtggc gtgtttaatt ttgttttagg tgcagccttg atcggagccg
      361 cattttttac tggcggtgct tctattgcgg cttggggagc tggagcaaaa atgatgggta
      421 tgttaggggc ttcgatgtta ctaggaggag tttcccaaat gctcaccaaa atgccaaaag
      481 cccccacaat gggtaatgaa acagaaaaag aaagctcaac ggctttttca aatttaaata
      541 acttggtgac tcaaggcaaa cctgtgccgt tggcttatgg cttaattcgg accggctcgc
      601 ttgtgatatc gcagggagtt gagacgatca ccattaaaga aaaccaaccg gcaagcaaca
      661 agaaaacagg ctttagaaaa taagggataa ttaccgattc agcacaagca cagcaactta
      721 atcagttatc tgtgaacttg accaaagcag agagcaattt aaatgccaaa atcacggaag
      781 aaaaaaaagc tcgtgttgat gcagataaag tgaatgcaga taaactcaca gacataacaa
      841 gccgtgttgc aaatgcggaa tcaactatta ccaatttcca atcaaccaaa gcgaataaaa
      901 gtgaggttgc gagccttgca caaagttcgt tgcaggca
//
LOCUS       DANLXB010000313          934 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.315, whole genome shotgun sequence.
ACCESSION   DANLXB010000313 DANLXB010000000
VERSION     DANLXB010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.315"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            36..215
                     /locus_tag="PXD41_002603"
     CDS             36..215
                     /locus_tag="PXD41_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL6290071.1"
                     /translation="MRIATGAGYRIYYAQQGNVIYILLHGGDKSTQQADIEKAKALWA
                     ELKTTGESNGNNTNQ"
     gene            193..516
                     /locus_tag="PXD41_002604"
     CDS             193..516
                     /locus_tag="PXD41_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6290072.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          329 a          181 c          187 g          237 t
ORIGIN      
        1 ataaatcttt agccggtaca ggcggacttt atgaaatgcg gatagcaaca ggagccggat
       61 atagaattta ttacgcacaa caaggaaatg taatttatat cttgttacac ggcggcgata
      121 aatcaacaca gcaagccgat atagagaaag cgaaagcatt atgggctgaa ttaaaaacta
      181 caggggaaag caatggaaac aatacaaatc aatgaacagg cagcagaaaa gcacggttta
      241 cgcccttttg acgtggcgga gtttttaacc gatgaggcaa ctattcaagc ctatttagcg
      301 gaagtgttaa aagagggcga ccaagacgaa tttttagaag ccttgaacaa tgtggcaagg
      361 gcaaggggaa tggcggagct tgccaagcaa acagggctag ggagagagag cctatataaa
      421 accctagcca aaggcagcaa accacgcttt gacactattc aaaaaattct aggggcattc
      481 aatttagtgc ttattccaca agtcaaaaat ggctaaaact tatcacttgc tacctgccaa
      541 aacctcacat tcaaatagcc gttgattgat attaacggct tttttattgc ttaattctgt
      601 accaattacg caccgattgc ggatcaatac ggggcaagtt ttcgcaaaac cttaatgaaa
      661 tatgaccgct tgtgattttg tacaaaacga cacaaaccaa tgtataaaat caaaacttgc
      721 cacaaatggc ggaatgatat taaatgcccc acaaactagc agtatttctt aatgactttt
      781 cattttaagg gtacatttaa gggtatgttt aacaagtctt aaatgcactt ctcaataata
      841 acaagcctca tagcatacaa ttcaaactcg gctggggacc atttaagcgt tgcatattgt
      901 ctttcactgt ctcaaattta ctataaaatc aaga
//
LOCUS       DANLXB010000314          893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.316, whole genome shotgun sequence.
ACCESSION   DANLXB010000314 DANLXB010000000
VERSION     DANLXB010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.316"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            46..>893
                     /gene="msrA"
                     /locus_tag="PXD41_002605"
     CDS             46..>893
                     /gene="msrA"
                     /locus_tag="PXD41_002605"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6290073.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDN"
BASE COUNT          340 a          164 c          152 g          237 t
ORIGIN      
        1 tcatccttaa aaaataaaat tacataagtt ataaaggaga actggatgaa atacaatcaa
       61 ctgttactat gtttggtgtc tgctatcttt accacctcct caatagcaaa catcacaacc
      121 cctaacgaga tgcgatctga aaacttacag gatatttact tggcaggagg atgtttctgg
      181 ggcattgaag cctatatgga aaaaatatat ggcgtaaaag aggctacatc gggctatgcc
      241 aatggcaaaa ctgagcaaac tgcttaccga attatcgggc aaaccgatca tgcagaaaca
      301 gttcacgtga cctatgatgc taataaaatt tctttagaaa agctgttgca atattacttt
      361 aaagtaattg atccaaccag taaaaataaa caaggtaatg atattggccg ccaatatcgg
      421 acaggtattt attatcagaa tgagcaagat aaacaaatta ttttaaaaga aatacaagct
      481 caacaagcaa aatacaaaca aaaaatacaa gtgcaagtag aaccattaaa acattatatt
      541 ttggcagaag agtatcatca ggattaccta aagaaaaatc caaatggcta ctgccatatt
      601 gatttaaacc aagccaacag cattattatc gatccgaaag attatcctaa acctagtgat
      661 gcaacattaa aaatgaaatt aacgcctttg caatatagcg ttacccaacg taaaaatact
      721 gagcgttcat tcagcaatga atattgggat aataccgcac cgggcattta tgttgatata
      781 actacaggag agcctctttt ttcatctctc gataaatatg actccggctg tggctggcca
      841 agttttacca aaccaattat caatgaggtt gttaactata ccgaagataa tag
//
LOCUS       DANLXB010000315          884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.317, whole genome shotgun sequence.
ACCESSION   DANLXB010000315 DANLXB010000000
VERSION     DANLXB010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.317"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..759)
                     /locus_tag="PXD41_002606"
     CDS             complement(<1..759)
                     /locus_tag="PXD41_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL6290074.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMET"
BASE COUNT          308 a          164 c          136 g          276 t
ORIGIN      
        1 agtttccata gaataagaca taaaatccag cagcacagat tgcagttcac tataagaact
       61 atttgctaaa taccataaca ctgggttttc atcagttaaa tcaaacccta cggctaaatt
      121 aggattaata tgctgtgcag cagaaatatc aaccgacatt gcaattgtat gtgaaatttc
      181 accttgtgcg acttttaaca atagctcttc ttgtgtaaat ttatccgaga tctgccattt
      241 tagttccgga ttatccacct taagctgatt taatattgga attaccgcag aaccggctgg
      301 aataatcaca ttttcccgca aatcggaaag tcgatatggt ctagcacttc cctttttata
      361 aacaagctgc caagaagccg aataatagga aggacctatc tgaaattcat cgtttaattc
      421 agaatggtaa agcagcccag cggcagcaat atcaacatca ttatttctta aggcctcaaa
      481 caatttctcg ctactatcat aagttttaat atcaagattg acctttaaat attgagcaaa
      541 ggctgttgct aaatcatatt caatgccact ttttccttca ggaccaacaa agtaagaaag
      601 tggatggttg atcattccaa cctttaacgt tttgctttgc tgaatttgtg tataatgatt
      661 tgcttctgaa tgaatgattt tttgccaagg aaaaatcata tcccaagccc acagtaacaa
      721 tgctacggca ataaaaaggc gagcaattaa tcctttcaat ttaaaatcct cattatttca
      781 agctaagcat taagcctatc tgaaattaca aattaacgga ataatacttt atagtttaat
      841 tatttattaa aaaaataaaa tgggaatata atggatataa tata
//
LOCUS       DANLXB010000316          858 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.318, whole genome shotgun sequence.
ACCESSION   DANLXB010000316 DANLXB010000000
VERSION     DANLXB010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.318"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            141..>858
                     /locus_tag="PXD41_002607"
     CDS             141..>858
                     /locus_tag="PXD41_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6290075.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKNAKDMCQDEN
                     GHYVHASGKRVLVGENKFNQP"
BASE COUNT          296 a          146 c          166 g          250 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaagaattct aaatttattt ctgtaagtaa tgatttttgt attatttatg
      721 ctaaaaataa agaaatgggg aaatttgttg aaaatattcc taaaaatgct aaggatatgt
      781 gtcaagatga aaatggacat tatgttcacg caagtggaaa acgagtatta gttggggaaa
      841 acaaatttaa tcagcctg
//
LOCUS       DANLXB010000317          855 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.319, whole genome shotgun sequence.
ACCESSION   DANLXB010000317 DANLXB010000000
VERSION     DANLXB010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.319"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>855
                     /locus_tag="PXD41_002608"
     CDS             <1..>855
                     /locus_tag="PXD41_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290076.1"
                     /translation="ASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGG
                     SSRVASSQYGDRRLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGF
                     TRTGLNYVYLIREDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEA
                     TDWFAFHSVKLEMGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISG
                     LTTRMGAAESNLTRTERAVTELNQTTVTTLRDLTARTKTTEGSLSRLETAKANKTEVA
                     SIAQSSLQS"
BASE COUNT          235 a          212 c          224 g          184 t
ORIGIN      
        1 gcaagtattg cccagcagaa cttacagagc atttggcgca ccgatgcgca aagtgcggtg
       61 gatgccttga aaatcggtgg tgcaaatcta ctggttgata gtgagtattt gacgacagcc
      121 cgttggggcg gtagctcacg agtggcaagc tcgcaatatg gtgatcgtcg cttgactcaa
      181 gtgtttgtga cccaagcagg cacagggcat tttggtgtga ctcaaggcac acaaaaagcc
      241 actacgcgta ttcgtcaggg tgaaacctat accttgtcac taaatgcgca ggggacggca
      301 ggttttaccc gcacagggtt aaactatgtg taccttatcc gcgaagatgg tggcaatttt
      361 agattgccaa ctttgccgct tactgcatca ttgtcccaac gccctaaagt gacatttact
      421 gcgccgtgga cgagcaatca agttcggtta ctgattggcg caaatggcat atttgaggcg
      481 acagactggt tcgcatttca cagcgttaag ctcgaaatgg gtaatgttgc cacaggctgg
      541 acaccaaccg ccaaggatat tgacgacaaa gtatcagcgg ttcagtccaa cctcaccgct
      601 tatcaggcgg cacaagctaa agcagatcaa gccaaagcta cgcagatttc ggggctcaca
      661 acccgaatgg gggcagcgga aagtaacctc actcgcaccg aacgggcagt gacggaactt
      721 aatcagacaa cggtgacgac actgcgtgat ctaaccgcgc gcaccaaaac aacggaaggt
      781 tcgctctctc gtttggaaac cgccaaagca aataaaactg aggtggcaag tattgctcaa
      841 agctccttac agtca
//
LOCUS       DANLXB010000318          854 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.320, whole genome shotgun sequence.
ACCESSION   DANLXB010000318 DANLXB010000000
VERSION     DANLXB010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.320"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..413
                     /locus_tag="PXD41_002609"
     CDS             <1..413
                     /locus_tag="PXD41_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290077.1"
                     /translation="IASDWEIIEAAQNKVKAELIRKSEKKAELCLNVAQAVLITNQKV
                     QKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIESDYIYQRATKDFYFNY
                     NGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK"
BASE COUNT          311 a          113 c          161 g          269 t
ORIGIN      
        1 ttattgcatc ggattgggaa ataatagaag cggctcaaaa taaggtgaaa gcagagctta
       61 taagaaaatc agaaaaaaaa gcagagttat gtttaaatgt tgctcaggct gtcttaatta
      121 ctaatcaaaa agtacaaaaa gatactttct caatgtgtgg tgaattttcg acagagattg
      181 tcttttctga ctctaaagca tatagccttg cagtatgtgg aaaggttaaa ggtaaagata
      241 ttatcggaaa tccgatagag agcgactata tataccaaag agcaactaag gatttttact
      301 ttaattataa tggcaaaaaa tcagcttatt atgatcctca atctgatctt gcaaggcttc
      361 aagaggtctc agactctatg tttaatgcta tgcaaaatag atattgtaag tgatgcttgc
      421 attggttttt aaatatttaa ctcaaataat ttatgtgttt ttagtttaat agggcgattt
      481 atggatgtaa aggtaattaa cgtcttacta attattcttt tttcagcaat tgtaataggt
      541 ttattccttt ttcaagaatc aagattaaga gatccaaaca accattcagt gatatattta
      601 gagcagattc aagaaatgtg cagcttagat aaaataggct cataccagat tgattttgta
      661 cgacaaagtg ggaatgagta caaagagagt attcttgtta atgattttga gttagcaata
      721 aaaaccgtat tatccacgtt aagaagggca aaaatagata gtgtgccagt aatatctaac
      781 acacttattt attatccacc gagctttcta caacgcaaga ggtagtcaag aaggaaagaa
      841 attaggatcg ataa
//
LOCUS       DANLXB010000319          850 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.321, whole genome shotgun sequence.
ACCESSION   DANLXB010000319 DANLXB010000000
VERSION     DANLXB010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.321"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            25..735
                     /locus_tag="PXD41_002610"
     CDS             25..735
                     /locus_tag="PXD41_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290078.1"
                     /translation="MWKKIRIDFTDTVKCQFCSRMITSGKAIVVQNELGNISFSGPSC
                     AQNKNGQNVVNPKEKIVDITKGCLLHEPTTNDKTDKQVDVEQDNFTSIHDDEVHNYLD
                     NNAVNAYLTLRFEKLSHLTSIIKSQKLNEIYHNYELTGQISQKDESYIRVIMYGEAYP
                     LYTYQNLQAVYAAEYWLQSFIQHNPENDLNFIQDTLNQLRRKLTLTEKQIMGINNWFK
                     NSDGKMVKLKTNAFVRGK"
BASE COUNT          318 a          121 c          149 g          262 t
ORIGIN      
        1 actcactata tggagagata tgttatgtgg aaaaaaatta ggattgattt tactgataca
       61 gtgaaatgtc aattttgcag tagaatgatt acatcaggca aagctattgt tgttcaaaat
      121 gaacttggca atatctcttt ttcaggaccg tcttgtgctc aaaataagaa cggtcagaat
      181 gtagtcaatc ctaaagagaa aatagttgat atcacaaagg gatgtttact tcatgagcca
      241 acaacaaatg ataaaacgga taagcaagta gatgttgagc aagataattt cacatccata
      301 cacgatgacg aagtacataa ttatttggac aataatgctg ttaatgcata cctgacctta
      361 agatttgaaa aactatcgca tttaacctcg attataaaat ctcaaaagtt aaatgaaatc
      421 tatcataact atgaacttac agggcaaata tctcaaaaag atgaaagtta cataagagtg
      481 attatgtatg gtgaggcata tcctttgtat acataccaaa acttacaagc tgtttatgct
      541 gctgaatatt ggcttcaatc atttattcag cataatccag agaatgactt aaattttata
      601 caagacacat taaatcagct cagaagaaag ctaacattaa ctgaaaaaca gattatgggc
      661 ataaataatt ggtttaagaa ttctgatgga aaaatggtga aattaaagac aaatgctttt
      721 gtaagaggga aatagttaac ataattgtgg tggccactta ttttgttacg taggcccgac
      781 gtaagactgg ttttaaaaga ctctttccta ttatttgctt gcttattttg acaaattcaa
      841 gttatatgta
//
LOCUS       DANLXB010000320          838 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.322, whole genome shotgun sequence.
ACCESSION   DANLXB010000320 DANLXB010000000
VERSION     DANLXB010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.322"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            16..789
                     /locus_tag="PXD41_002611"
     CDS             16..789
                     /locus_tag="PXD41_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6290079.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
BASE COUNT          277 a          133 c          187 g          241 t
ORIGIN      
        1 tcaaaggaat aaattatgaa cttgagtaat gcattaaaat taatcaaata taatgaatta
       61 gacgtgctag aagttaatca caataaattc aaagctaaaa ttgcattaca aggagcacaa
      121 ttgctaagtt ggcagccgta taatgcagag caagatgtgc tgtggttaag tgagatagaa
      181 ccgtttagaa ttggctctgc gattcgtggc ggtataccaa tttgttatcc gtggttcggt
      241 tcaataaaag agcctgccca cggcacagct cgcattcaag aatggcgttt agttgagcat
      301 acttgttctg atgaaaatgt cggtttggta tttgccttag agaataaagc gaaaatggaa
      361 atgatgttag gcgaaacttg tgagttatat tttacccatt tagatccaga accagcacaa
      421 ctggcattgc actcttattt taatattggt gatattgaaa aagtggaagt gcaaggcttg
      481 ccaactcgct gttttgataa gctaaccgat caagaagttg aagtgccatc acctcgcaag
      541 ataagtgaaa atgtggattg tatttatccg gcacaagcgg tgaattttat tcaagatttt
      601 gcaaatcagc gcaccattaa agttgagcat attaatgcga ccgaaaccgt actttggaat
      661 ccttggcata ataccgttag tgcgatgaca gaaacggcgt atcaaaatat ggtatgtgtg
      721 gaaaccgctc ggataaatac tctacttcaa caaaatgaaa cgctaggagt gagggtttta
      781 gtgcgatagt gtttaatgag agcaagcagc tgaattagta atattgttta caaattta
//
LOCUS       DANLXB010000321          838 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.323, whole genome shotgun sequence.
ACCESSION   DANLXB010000321 DANLXB010000000
VERSION     DANLXB010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.323"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(133..822)
                     /locus_tag="PXD41_002612"
     CDS             complement(133..822)
                     /locus_tag="PXD41_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL6290080.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
BASE COUNT          291 a          178 c          134 g          235 t
ORIGIN      
        1 tttttagtta taaccaataa ctatcggtta tattgtaacc taaaagcacc tttccataca
       61 aataataatg tttttatgct actggtacga tcagctctat caacttatgc cgcttaaatg
      121 tagcaccttt aactaaaaat aagccaacaa actcagcccc aaaatatccg caatactgtg
      181 tgccacccaa aatggaaata ggtttttctg ctttgagcgt gagtagagca aataaataat
      241 taaaccgagc caaattccta atcctaacgc actttccatt ccttgatagg tatgaaaact
      301 cacccgaata atcagtgaat aaatcaccgc ccattttaaa tattcaggtt taaccgccaa
      361 gcaaataccg aggaaaaaga tttcttcata aaagccgttt aaaatcgcat acagcacggt
      421 agaaatattc acttctctca atactgccca aaatggctcc ggatacacta ggttgtaaac
      481 accatataat gtttcaaaat agagatccat cgctaacgag agcaagataa acaacccgat
      541 accgctaaaa aaagccagcc aagagggacg aatcacccaa cggctgaaat caaaattccg
      601 ccattttaga tagcccattg caatcagcaa caatgcaagt tgcgtcagta atgcccaata
      661 attttgttca tttgaaaagg ttaaattttc ttcaaaatta ccttgcattt cggtggtgat
      721 gaaatattgc tgggttgagg tataaattgc ctcaccaaac aggatcaggg ttagcacgca
      781 taaatcgtac caatttaggt aggtggtttt attattttgc attaatgtct cctttgta
//
LOCUS       DANLXB010000322          825 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.324, whole genome shotgun sequence.
ACCESSION   DANLXB010000322 DANLXB010000000
VERSION     DANLXB010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.324"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>825
                     /locus_tag="PXD41_002613"
     CDS             <1..>825
                     /locus_tag="PXD41_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290081.1"
                     /translation="AFSYVTHYIKKHSYAYSKADNIQELLVKFFSRKQPVMQSAFNHQ
                     KRIVKWLWAEFWDKNIISMTLRIDGYRNANLWHYLRYQSRIEVLYKIANEHPNLLPLL
                     AYVKPEYWKCSDLFSYQNWVRSRDKQPFILYAKCQDKMLCESKGQWRWLKKQSRIVVD
                     QCFLHVNQWQLLTEIQMPFKIPVCVICFILTNFSMISCELDRSRQRRLLSIFIQYIYH
                     YWKDNGFRQLKIHLSHLRVLFQDIEDYMIHEGYLHGIPQTWQHLVYHLNLINSNTS"
BASE COUNT          283 a          123 c          143 g          276 t
ORIGIN      
        1 agccttttca tatgtaactc attacattaa gaaacattcc tatgcctata gtaaggcaga
       61 caatattcaa gaattattag taaagttttt ctctagaaag caacctgtta tgcaaagtgc
      121 atttaatcat caaaaaagga ttgttaagtg gttatgggct gaattttggg ataagaatat
      181 tatctcgatg acacttagaa ttgatggtta tagaaatgct aacttatggc attatttacg
      241 ttatcaatca cggattgagg tattgtataa aatagcaaat gaacacccga atctactacc
      301 attattagcc tatgttaaac ctgagtactg gaaatgctcg gacttattta gttatcaaaa
      361 ttgggtaaga agccgtgata aacagccttt tattttgtat gctaaatgcc aagataagat
      421 gttatgtgaa tcaaaggggc aatggagatg gttaaaaaaa cagtcgagaa tagttgtaga
      481 tcaatgtttt ctacatgtta atcaatggca gttattaaca gaaattcaaa tgcctttcaa
      541 gatcccagta tgtgtcatat gtttcatact tactaatttt agcatgatca gctgtgagtt
      601 agatcgatct agacaacgtc gattactctc tatttttatt caatatatct atcattattg
      661 gaaagataat gggtttagac aattaaagat acatctttct catctgagag tgctttttca
      721 agatattgaa gattacatga tacatgaggg gtatttacat ggtatacctc agacttggca
      781 acatttggtt taccacctca accttataaa ttcaaataca tcaaa
//
LOCUS       DANLXB010000323          802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.325, whole genome shotgun sequence.
ACCESSION   DANLXB010000323 DANLXB010000000
VERSION     DANLXB010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.325"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            130..519
                     /locus_tag="PXD41_002614"
     CDS             130..519
                     /locus_tag="PXD41_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6290082.1"
                     /translation="MADPIEWSIITTDCFDEWFGQQDGSTQERVLACLIYLRKFGYSL
                     GRPYADTVYQSKFPNMKELRIQNKGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKM
                     IALADAEFTSYLNNLEKENENVRSNAQ"
     gene            491..790
                     /locus_tag="PXD41_002615"
     CDS             491..790
                     /locus_tag="PXD41_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6290083.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          279 a          138 c          153 g          232 t
ORIGIN      
        1 tggattgttg ataaaaaaag accgcttgta gtcatacaaa cggcttagta ggaagagtaa
       61 attgctttac ataatataac cttttattta tacttcattt ataaatagta agttataaaa
      121 ggttcaaaaa tggcagaccc tatagaatgg tctattatca cgactgactg ctttgatgaa
      181 tggttcggtc aacaagatgg aagtactcaa gaacgtgtct tggcttgttt aatctatctg
      241 cggaaattcg gttatagtct aggcagacct tatgctgata cagtttatca gtctaaattc
      301 cctaatatga aagagttacg cattcaaaac aaaggtaagc caattcgagc attttatgct
      361 tttgaccctt tacgccaagc gatagtactt tgtgctggcg agaaaggtaa agacaaaaga
      421 ttctatgaaa aaatgatcgc tcttgctgat gcggaattta cctcctattt aaataattta
      481 gagaaagaaa atgaaaacgt tagatcaaat gctcaatgaa ctctctcctg aacgccgcca
      541 aaaagtggaa gatatggctc aagaaatgat tagagagata caactttcaa aactaagaga
      601 agagctaaat ctctctcaac aacaattagc tacagctctc ggtatttcac agcctgctat
      661 tgctaaactt gaacagaaag ataacgatcc aagattatcc acgctcaaac gctatattga
      721 agcaatgggc ggtaagttaa aacttgccgt tgaattgcct acaggcgatg agcgtgtaat
      781 taggatttaa ttactttgtt aa
//
LOCUS       DANLXB010000324          780 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.326, whole genome shotgun sequence.
ACCESSION   DANLXB010000324 DANLXB010000000
VERSION     DANLXB010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.326"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(77..382)
                     /locus_tag="PXD41_002616"
     CDS             complement(77..382)
                     /locus_tag="PXD41_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL6290084.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
     gene            complement(391..666)
                     /locus_tag="PXD41_002617"
     CDS             complement(391..666)
                     /locus_tag="PXD41_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6290085.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
BASE COUNT          245 a          157 c          104 g          274 t
ORIGIN      
        1 aatattcctt gaataaaccg ccctcgtggc ggttttcttt tcctaagaac aataaaatcc
       61 tccgaagagg gcattattaa gcgtgagcag tttctccata atttccacca aaatgaaaag
      121 gcataacagg atttaaccgc tgctgcttta actcccataa atcatattta gtttgtaagt
      181 ttagccataa cttagccgta ctaattcctg cctcttctaa acttaacgct aaatttgcag
      241 tcattggtgt tttgccgtgt aatactcttg ataaagtttc acgagaaaac ccaagatgat
      301 ctgctaattc tttaattttg atgttatttg gttcaataaa tccatctaat aaaatttgcc
      361 ccggatgtgc tggtttacgc ataactcccc ctaatgataa tcttcataat tcaaaatata
      421 agcatcgcca tttacaaatt caaatgtaat ccgccagttg ccattaaccg tcatagaata
      481 aatgcctttt cgatttcctt ttaactcgtg gcattggtaa aaaggcataa attcatcaat
      541 actttctgct gaatcaatca aatctaaaat accatcgatt ttacgttgat gattaagctg
      601 aatacctttt gttattcctt tttcaaaata ttgttttaag cctttatgct tgaagctctt
      661 aatcataata acacctagca aacacaatgt gatacaaata tatcacgcac aataaaaaag
      721 acaatctttt ttaagtgctt tttctcctaa ttgtctttct cttcttatgt taagtgttta
//
LOCUS       DANLXB010000325          773 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.327, whole genome shotgun sequence.
ACCESSION   DANLXB010000325 DANLXB010000000
VERSION     DANLXB010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.327"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..509
                     /locus_tag="PXD41_002618"
     CDS             <1..509
                     /locus_tag="PXD41_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL6290086.1"
                     /translation="LFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIAEIEK
                     TVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNIHRLA
                     PNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLKAIED
                     LEQELLFK"
     gene            complement(513..586)
                     /locus_tag="PXD41_002619"
     tRNA            complement(513..586)
                     /locus_tag="PXD41_002619"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(552..554),aa:Cys,seq:gca)
     gene            complement(602..677)
                     /locus_tag="PXD41_002620"
     tRNA            complement(602..677)
                     /locus_tag="PXD41_002620"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(642..644),aa:Gly,seq:gcc)
BASE COUNT          267 a          150 c          143 g          213 t
ORIGIN      
        1 aactttttat cgcccaaata aaacaaaacc tctcggaatt aaatgtattt tcaacggata
       61 atatttttct gaattcaccc tatttctcac agcaaaccgg tttggtgagt gtgttcattg
      121 ctgaaattga aaaaacagtt gagctattat tgaaccaaac tgaggtgtta tatagtgaat
      181 tttacgctga aaaattggtt aaacaagttg atgcattaaa gaatgccgta gaaaaaatcc
      241 aaagtaagcc agaatcagct caattccatt cttcctatca attttctcca aatattcatc
      301 gtttagcgcc caacaaacgc ttacaagaat accgtaaagc gttacgtgca ttgaacgaga
      361 aaattagctg gttagttgag caaaatttaa atacgcaaaa tgaagcaact aaacaaaccc
      421 tgcaaaatca aattacagag acagaatatc gcaaaatgaa atgtttaaaa gcaattgaag
      481 atttagaaca agagttgcta tttaaatagt gatggaggcg tgtcccggag tcgaaccgag
      541 ctacatggat ttgcaatcca gtgcataacc gctttgctaa cacgccataa gatttggaaa
      601 ttggagcggg aaacgaggct cgaactcgcg accccgacct tggcaaggtc gtgctctacc
      661 aactgagcta ttcccgcatc tgaattccca caacattgcg ctgtggaacg aggtgcattt
      721 tacggattta tcattttatg tcaatgctaa atttaacatt ctagattcaa atg
//
LOCUS       DANLXB010000326          752 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.328, whole genome shotgun sequence.
ACCESSION   DANLXB010000326 DANLXB010000000
VERSION     DANLXB010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.328"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            73..>752
                     /locus_tag="PXD41_002621"
     CDS             73..>752
                     /locus_tag="PXD41_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6290087.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NPVLISNL"
BASE COUNT          246 a          111 c          144 g          251 t
ORIGIN      
        1 atcctgctta tattgagagc tatgaattgc ttgaaaaatt aggcgttcag attgttgata
       61 ttagagaata aaatgaagaa atatttaatt tcattagaaa aagatgtaaa aagacgagag
      121 ctatttttta gccagcctaa tacggaagat tttgaggtgt tcagtgccat taatacaatg
      181 agtagtgatt gggaggcatt aaataaccat tttgatttgg ctctgtttga acagcgatat
      241 gggcgtaaaa ccactaaggg cgaagtaggt tgtactttaa gccatttagc cgtttaccaa
      301 aaaattgccg aagatagcac tattgcggaa gatgattact gcctagtctg tgaagatgat
      361 gccttatttg ccgatgattt ccaaaaacat cttgatgctt tattagcaca aaatttaaaa
      421 gtcgatatta ttttagttgg gcagtcgaaa attccaactt ttaacgatag cgaattagag
      481 cttaattacc catcaacctt tggctttttg caaaaaaata ttccgaatag ccaatataaa
      541 tatgcttatt cttacctgaa ttattttgct ggtacggttg catatttaat taaaaaatcg
      601 accgcttgtc agtttttagc acaatgtgcc ggaaaaaatc catactggct tgccgatgat
      661 tttattttat ttgaaaagaa tttcaaattt gatgtgttaa ttgtccgccc gttaatggcg
      721 atagaaaatc ctgttctaat tagtaatttg ga
//
LOCUS       DANLXB010000327          692 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.329, whole genome shotgun sequence.
ACCESSION   DANLXB010000327 DANLXB010000000
VERSION     DANLXB010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.329"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>692
                     /locus_tag="PXD41_002622"
     CDS             <1..>692
                     /locus_tag="PXD41_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290088.1"
                     /translation="KEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAFLG
                     NMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKAKV
                     GVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYPEI
                     FVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDKLQ
                     SQTTQERAILFT"
BASE COUNT          226 a          105 c          138 g          223 t
ORIGIN      
        1 aaagaagtta tggattttta tgaagctaat aaccatccaa aaggctttaa ttttccgttt
       61 tggacagatc atgtagcatt tccaagtgta tataacccgc ttcattctga ttatgagatt
      121 gcatttttag gtaatatgaa tgggcaagtt agacgcaaaa gatacatgga attggcttca
      181 ttaccattta ccaaaaaagt attcggttta atagattcag atccattagc aatgcatggt
      241 ggatttatca atgaagcata tttacataca aaacgtgtaa cagaggtttt atctaaggca
      301 aaagttgggg tgagtatccc acaattcttt accgaatata atggtttaga ttatgattat
      361 cctgaattgg cgggtttagg atatttccaa tttcctagtc gagttatcca atatgctgca
      421 agtgggttac ctattgcagc ggttggtgat gagagaatga aggaagttta tcctgaaatc
      481 tttgttggca atagtattac agagctggag ccgtacatta aacaaatttg tgaagattat
      541 gattttgcac tatcagaatc ggctaaaatt ctaactagat ttagaaagaa ctattctgcc
      601 ttatcccgtg ccatgatgtt gattgatttg gtagaaaatt tagacaaact acagagccag
      661 acaacacaag agcgcgcaat tttatttact aa
//
LOCUS       DANLXB010000328          676 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.330, whole genome shotgun sequence.
ACCESSION   DANLXB010000328 DANLXB010000000
VERSION     DANLXB010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.330"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..147)
                     /locus_tag="PXD41_002623"
     CDS             complement(<1..147)
                     /locus_tag="PXD41_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6290089.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGI"
     gene            complement(140..>676)
                     /locus_tag="PXD41_002624"
     CDS             complement(140..>676)
                     /locus_tag="PXD41_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290090.1"
                     /translation="FKWKYILPLIAFTALILFLAIVFPENRYVEHALEPVINLLSGTG
                     KVSSSTDNLVKNHLFLPTLNQFISGDGLYYTETGGYYGGSDSGYIRQVLYGGVSYMLA
                     CFAFTYYFVRKVAVNWFEGSWIFTLSTIGILAILNIKADTFAFPGLMMLFLMFLSLFG
                     TSGRNVTFFCKNKEAEYV"
BASE COUNT          241 a          138 c          112 g          185 t
ORIGIN      
        1 aattcctaaa gtttcactga ccggtatttt tgagcagtca tcaacaatga tcacttcaaa
       61 attatatgca gtttgttgct ttaaactctc aagcaacgca ttgatttctt gattacggtt
      121 ataagaaggc acaataatac taaacatatt cagcctcttt gtttttgcaa aaaaatgtta
      181 catttcgacc gcttgttcca aacagcgaca agaacattag aaacagcatc atcagccccg
      241 ggaaagcaaa ggtatctgct ttaatattta aaatagctaa aatgccgatg gtggataagg
      301 taaaaatcca actgccttca aaccaattca ccgccacttt gcgtacaaaa tagtaagtga
      361 aggcaaaaca cgccaacata taacttactc caccatataa tacttggcga atatagccgg
      421 aatccgatcc accataatag ccaccagttt cggtgtaata taaaccatca ccggaaataa
      481 actgatttaa agtcggtaaa aacagatggt ttttcactaa attatcggtt gaagagctga
      541 cttttccggt gccggacaat aaattaatta ccggttctaa ggcgtgttca acataacggt
      601 tttccggaaa aacaatcgcc aaaaatagaa ttaacgcagt gaaggcaatc agtggcaata
      661 tatatttcca tttaaa
//
LOCUS       DANLXB010000329          675 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.331, whole genome shotgun sequence.
ACCESSION   DANLXB010000329 DANLXB010000000
VERSION     DANLXB010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.331"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>675
                     /locus_tag="PXD41_002625"
     CDS             <1..>675
                     /locus_tag="PXD41_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6290091.1"
                     /translation="RGDKNAMKGFIFNIPSIEYQKKCIANYFAFDQKIQLNTQTNQTL
                     EAIAQAIFKSWFVDFDPVRAKAAALSEGKSEHEANLAAMSVICGKDTSELNDTEYKAL
                     WQIAEAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTPPRKESEWFSDNANDTEWISIK
                     DMGNQGLFITESSEYLKAEAVDTFNIKRIPENTVILSFKLTVGRVSITTKETTTNEAI
                     AHFKIP"
BASE COUNT          244 a          124 c          133 g          174 t
ORIGIN      
        1 acgaggggat aaaaatgcaa tgaaaggttt tattttcaat atcccaagta ttgaatatca
       61 aaaaaaatgt attgctaatt attttgcctt tgaccaaaaa atccaactca acacccaaac
      121 caaccaaacc ctagaagcca ttgcacaggc aatcttcaaa agctggtttg tggattttga
      181 ccctgtgcgc gccaaagccg ccgccctaag cgaaggcaaa agcgaacacg aagccaacct
      241 tgcggcaatg tcggtgattt gtggtaaaga caccagcgag ttaaacgaca ccgaatacaa
      301 agcgctttgg caaatcgccg aagccttccc aagtgagttt ggagatgaag ggttacctat
      361 tggctggaaa ttcaatcaag cagacaattt atttgatgtt ggtattggga aaaccccacc
      421 aagaaaagag agtgaatggt tttctgataa tgcaaatgat acagaatgga tttctattaa
      481 agatatggga aatcagggat tatttatcac agaaagtagc gaatatctaa aagctgaagc
      541 cgtagataca tttaatatta aaagaattcc tgaaaatact gtaattttga gttttaaatt
      601 aaccgttggt agagtttcaa ttacgacaaa agaaacaact actaacgaag ctattgctca
      661 ttttaaaatt cctag
//
LOCUS       DANLXB010000330          668 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.332, whole genome shotgun sequence.
ACCESSION   DANLXB010000330 DANLXB010000000
VERSION     DANLXB010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.332"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..136)
                     /locus_tag="PXD41_002626"
     CDS             complement(<1..136)
                     /locus_tag="PXD41_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290092.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     S"
     gene            complement(206..>668)
                     /locus_tag="PXD41_002627"
     CDS             complement(206..>668)
                     /locus_tag="PXD41_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290093.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTREFDAAVKAFENAFNAKD
                     TAENTSPAESKETEQENKQETTKLVITKPTLKGSEKQIAWADEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDSSEPKQFWLSVKYGW"
BASE COUNT          153 a          136 c          120 g          259 t
ORIGIN      
        1 tagagataaa ccctatccct cttatagggt atctcaagat tattgtctgt acgtttgttg
       61 gcacatcgtc accataagta gcagcgacaa tttgcccgat aatgcgcata atttgtggtg
      121 ttacttgtgt agtcataata atctccagtt atctgtttgt tttagccgta agcctttgct
      181 cttacggctt atttgttatc tcaatctacc atccatattt tacggataac caaaattgct
      241 ttggttcgct actatcattt agacctttaa atttttcgat ccactttcca gcgtttgtca
      301 ttgcaaaaaa attatctacc attgcttgag cttgagtaat ttgttcttgc gttgctgtta
      361 ctgggataga ggtatcacca atcttcgcaa taaaaagatt gatgatttcg tctgcccaag
      421 cgatttgttt ttcagagcct tttaatgttg gttttgtgat tacaagctta gttgtttctt
      481 gtttgttctc ttgctctgtt tctttgcttt ctgctggcga tgtattttca gcggtgtctt
      541 tagcattaaa agcgttctca aatgctttta cggcagcgtc gaactctctt gttgttaatc
      601 ctttgccaag tttgctcact aactcacctg tggctaagtc aatgtacaac tgataattcc
      661 gatcacct
//
LOCUS       DANLXB010000331          663 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.333, whole genome shotgun sequence.
ACCESSION   DANLXB010000331 DANLXB010000000
VERSION     DANLXB010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.333"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>663
                     /locus_tag="PXD41_002628"
     CDS             <1..>663
                     /locus_tag="PXD41_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6290094.1"
                     /translation="ELLTELLSLEGFKMKVVHNGLEGLNELESNQYDLVLLDVMMPVL
                     SGVKTLKRIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKPFNNRELVARMKAIL
                     RRTTSRPASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGCDLDLTGTEFALLQM
                     LMRNSGEILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPEREDGLPWFKTLRGRG
                     YL"
BASE COUNT          228 a           98 c          132 g          205 t
ORIGIN      
        1 ctgagctact aactgaatta ctttcattag aaggatttaa aatgaaagtt gtgcataatg
       61 gtttagaagg cttaaatgag ttagagtcta atcaatatga tttagtatta ctagatgtga
      121 tgatgccggt attaagtggc gtgaaaacat taaaacgtat acgacaaaaa tactcattac
      181 ccgttttaat gttaagtgca agagatgatc aaattgatag aatcttaggt ttagaattag
      241 gggctgacga ttatgtaccg aaacctttta ataatcgtga actagtcgct agaatgaaag
      301 cgatacttcg aagaacaacc tctcgcccag cttcaacaga ccattctgaa cagaattata
      361 ctgaaaacat ctctaaatca ttacaatttg ccggagttga attacattca ggacgtcagc
      421 aggcttatta tcaaggatgt gatcttgatt taacggggac tgaatttgca ttattacaaa
      481 tgttaatgcg aaactcaggg gagattttgt ccagagaatt attgagttta aaaattttag
      541 ggaaaaattt aacgccttat gatcgtgcaa ttgatatgca tatttctaat cttcgtaaaa
      601 aattacccga acgggaagat ggattacctt ggtttaaaac cttaagaggt cggggttact
      661 tat
//
LOCUS       DANLXB010000332          657 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.334, whole genome shotgun sequence.
ACCESSION   DANLXB010000332 DANLXB010000000
VERSION     DANLXB010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.334"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>657)
                     /locus_tag="PXD41_002629"
     CDS             complement(<1..>657)
                     /locus_tag="PXD41_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290095.1"
                     /translation="IEFLNEVDIGNKVKFYYPDERHELFVELLIVLATLRIYRNRNIF
                     FFEKGFFNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIIDTINEGLDLDIAIENFEV
                     LSQEEMTECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDNSELILLAKQPMVEEIIP
                     KPDSKASSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQNIARVANVVYNLLPGMV
                     "
BASE COUNT          220 a          131 c           85 g          221 t
ORIGIN      
        1 cttaccatgc ccggcaataa gttataaacg acatttgcta ctcgtgcgat attttggtcg
       61 ttttgtaatg ccacagcact taattgcaaa ccactttctt ttaatttagc aattaagata
      121 tttgagtttg aatcaaagaa ttttagaatt gcagaggagg ctttgctatc tggtttaggg
      181 attatctctt caaccatagg ttgtttagca agtaagatta gctcactatt atcttcataa
      241 aagctattta tttcatcaac atttaataaa ccaatttcgc cttcttcagc tttcttaatg
      301 agagcctgct catataaacc catacattca gtcatttctt cctgactcaa cacttcaaag
      361 ttctcaatcg caatatctaa atctaaaccc tcatttatcg tatcaataat ttctggaaaa
      421 acctttccta ccaaactagg gaagtctaaa aatccattaa acgcaccagt cccgagaata
      481 gtgataaatt cgggaaaaaa gttaaaaaac cccttttcaa agaagaatat atttctatta
      541 cgatatattc ttaatgttgc tagaacaatg agcagctcta caaaaagctc atgtctttca
      601 tctgggtaat aaaacttaac tttattacca atatccactt catttagaaa ttctata
//
LOCUS       DANLXB010000333          644 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.335, whole genome shotgun sequence.
ACCESSION   DANLXB010000333 DANLXB010000000
VERSION     DANLXB010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.335"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>644
                     /locus_tag="PXD41_002630"
     CDS             <1..>644
                     /locus_tag="PXD41_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6290096.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANLXB010000334          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.336, whole genome shotgun sequence.
ACCESSION   DANLXB010000334 DANLXB010000000
VERSION     DANLXB010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.336"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            60..>643
                     /locus_tag="PXD41_002631"
     CDS             60..>643
                     /locus_tag="PXD41_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290097.1"
                     /translation="MARQEFKSQGKFTRISAPDGGIEAMCELPDGSVCGWQAKYFLSS
                     FSSSQWQQIEDSFKESLKNYPKLTKYYVCVATDRANANVSGKKSFLTKWEEYTQRWKD
                     FAQSQGREIEFEFWGSFELSDLLSKPENAGKKFFWFNESELSDKWFEQYNQQAINNLG
                     VRYTPEINVDLPIAMQLESLARTQIFKKHLSDEF"
BASE COUNT          230 a          106 c          116 g          191 t
ORIGIN      
        1 aaaacatcaa gcccttacaa ggttctcaaa atagtgcttt tgaagagcta gtatgccaat
       61 tggcacgcca agaatttaaa tctcaaggaa aatttactcg aatttctgca cctgatggtg
      121 ggattgaagc aatgtgtgaa ttgccagatg gttccgtatg tggttggcaa gccaaatatt
      181 ttttaagctc attttcttca tcacaatggc aacaaattga agattccttt aaagaatctt
      241 taaaaaacta tcctaaacta accaaatact atgtttgtgt ggcaaccgat agagcaaatg
      301 ccaatgtatc tggaaagaaa tcatttctta ccaaatggga ggagtatacc caaagatgga
      361 aagactttgc tcaatcacaa ggtcgtgaaa tagaatttga attttgggga agttttgaat
      421 tatctgactt attatcaaaa cctgaaaatg caggcaaaaa attcttttgg tttaacgaaa
      481 gcgaattatc tgacaaatgg tttgaacaat acaatcaaca agccattaat aatcttggtg
      541 tgcgttatac acctgaaatt aatgttgatt tacctattgc aatgcaatta gaaagcttgg
      601 caagaaccca aattttcaaa aaacatctga gtgatgaatt tca
//
LOCUS       DANLXB010000335          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.337, whole genome shotgun sequence.
ACCESSION   DANLXB010000335 DANLXB010000000
VERSION     DANLXB010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.337"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..493
                     /locus_tag="PXD41_002632"
     CDS             <1..493
                     /locus_tag="PXD41_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6290098.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..>643
                     /locus_tag="PXD41_002633"
     CDS             504..>643
                     /locus_tag="PXD41_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6290099.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYS"
BASE COUNT          182 a          127 c          160 g          174 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttc
//
LOCUS       DANLXB010000336          640 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.338, whole genome shotgun sequence.
ACCESSION   DANLXB010000336 DANLXB010000000
VERSION     DANLXB010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.338"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(19..303)
                     /locus_tag="PXD41_002634"
     CDS             complement(19..303)
                     /locus_tag="PXD41_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290100.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
     gene            complement(321..482)
                     /locus_tag="PXD41_002635"
     CDS             complement(321..482)
                     /locus_tag="PXD41_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL6290101.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
BASE COUNT          199 a          112 c          102 g          227 t
ORIGIN      
        1 cactcctctt tcacatcact aacgtcgata aaaacctctc cttactgacc tgtgataggt
       61 gtatataaac tcatctaaat ctataggaat atctgaatta atgatttctt gtagaaagag
      121 cataaaatgc tctaactgtt ctagtctctt atctgtttcc ttttttgact caaaacgctt
      181 ttgcttaaaa cgaacttcta tcgaatctac accgatgtaa attcgatgtt cctgcatttt
      241 gagtagtcgg acagtttcaa aaaaatgttt aggggtgatg tgagaaaggg ttatatttgc
      301 catagtttag cttgaaaacg ctatttatta cttgttttag caacatacaa agaatacttt
      361 tttaaagcct ctagcattac taaattaggc tctttaggat gttctaagct ctcaagaatt
      421 agcatttgat tttcaagaga aagctttaga acaagatttg aactattctc tattttttcc
      481 attttaatta tctcattaga tgactttcgc ataacaacag gttatgtgta aattctcgtg
      541 cagtgggaca agcccgattg tactgcactc gaattgtaac ataacctgta ggacattatg
      601 cgaaaattaa taatataagt ttttcatcaa tcggcggtat
//
LOCUS       DANLXB010000337          637 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.339, whole genome shotgun sequence.
ACCESSION   DANLXB010000337 DANLXB010000000
VERSION     DANLXB010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.339"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..141
                     /locus_tag="PXD41_002636"
     CDS             <1..141
                     /locus_tag="PXD41_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6290102.1"
                     /translation="GLINGIAVPKLNQRNLNSILIAIPPISEQHRIVEKIEKLFSEIE
                     KF"
     gene            complement(187..>637)
                     /locus_tag="PXD41_002637"
     CDS             complement(187..>637)
                     /locus_tag="PXD41_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6290103.1"
                     /translation="FMAATGSRVSELIQIKCEHIKIGYLDLYSKGGKLRRIYIPKSLQ
                     KECSEWLRLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRF
                     AKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIIDW"
BASE COUNT          219 a          109 c           88 g          221 t
ORIGIN      
        1 ggattaatta acggaatagc tgtacccaaa ttaaatcaaa gaaacctaaa ctctatttta
       61 attgctattc cacctatttc tgaacaacat agaatcgttg aaaaaattga aaaattattt
      121 tcggaaatag agaaatttta gaaaaactta tatgtccaag ggcgtgtgaa acacgcccct
      181 taaaaattac caatcaataa ttttattcac aatttcctgc tgttctgtgc ttgtttttcg
      241 taaatagatc cttgtggttt ctatgctttc gtgccccatt aaatcagcaa gaaaagcaat
      301 atcattaaat cgttctaaaa aactttttgc aaaacgatgg cgaaatgaat gtggataaac
      361 aattttagga tctaatttat agcgtctagc aaatactttt aattggctgg caatgccacg
      421 agtagtaatt ctatcaccat atttatttaa gaaaataaat ccattatgct tattatttaa
      481 tctcaaccat tcagaacact ctttttgcag agattttggg atgtaaattc gtcttaattt
      541 tccaccttta gaatagaggt ctaaatagcc tattttaata tgttcacatt ttatctggat
      601 taattcactt actctcgaac ctgttgctgc cataaaa
//
LOCUS       DANLXB010000338          631 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.340, whole genome shotgun sequence.
ACCESSION   DANLXB010000338 DANLXB010000000
VERSION     DANLXB010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.340"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            59..>631
                     /locus_tag="PXD41_002638"
     CDS             59..>631
                     /locus_tag="PXD41_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290104.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKL"
BASE COUNT          216 a           84 c          146 g          185 t
ORIGIN      
        1 gacgtctcgt agtaaacagc tagtttgtaa gaatagatat ttggaaggga aacgtaaaat
       61 gagagaacca ttattagatg aagatgaatt aaaaaaatgg ttgcaaacta tttttactga
      121 caatttggtc attattgtcg gttcgggttt gtcctgtgcc gaaggtttgc cgggaatggg
      181 agcattagct gatagattaa aagaacgaat gcctgaatgt cttgatgata tagataaggt
      241 aacatggaat accatttctg attgtctgga ttctgaaggc ttggaaggtg cattgttgaa
      301 gcatcaagca aatgagacga tagaagccgc tattattaaa ataacagccg agtatgtact
      361 ctccgaagag caaaaagcga taaacaaatg tattgctgag aatcagaagc tcaaattttc
      421 ttatttgctt ccccatattt cagcttcaaa tcctaaaatt gcccgtgtaa ttactactaa
      481 ttatgataga ttgattgagt ttgcggcaga gtatgaaaat tggggaatag attcaatgat
      541 ggtcggtcgt tattggggaa aacataatcc tgatttgagt aggaaattgc agataagaga
      601 cattagagta aaaggtaaat gtccaaaatt g
//
LOCUS       DANLXB010000339          628 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.341, whole genome shotgun sequence.
ACCESSION   DANLXB010000339 DANLXB010000000
VERSION     DANLXB010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.341"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            29..307
                     /locus_tag="PXD41_002639"
     CDS             29..307
                     /locus_tag="PXD41_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6290105.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            332..628
                     /locus_tag="PXD41_002640"
     CDS             332..628
                     /locus_tag="PXD41_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6290106.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
BASE COUNT          204 a          104 c          123 g          197 t
ORIGIN      
        1 tccatttaaa aataatggag acttttcaat gaaaaaatta cttgcaattg caacagtatt
       61 ttctttagca gcctgttcta ctcaaacact tgaactatct cctgctaagg aagctcaata
      121 tgatcgtgtt caacacttct ttgtttcagg gcttgctcaa aaacaagaga tagatgcagc
      181 aaaaatttgt aatggtgcag ataaggtagg taaggtagaa actgaaacta ctttctttaa
      241 tggcttgtta ggtacaatta cttatggtat ctattcacct cgccaaatcc gtgtatattg
      301 taactaatcc tagtaattta aggagttgaa aatgaaaaaa ttgcttgcta tgtctgtatt
      361 aacagccctg ctgactacag catgtacaac acaaactgcc catattggcg gcaaagttac
      421 tgataatatt aaaccaacta agagtgtaac tcagtcgttc tttataggtg ggattgggca
      481 agaagaaaca ttgaatgttg tagaggtttg tggttccaaa gataaagtgc agcaggttga
      541 aacagtactt tcaggtgggg acattctatt aggtcttgtg actatcggta tttatacacc
      601 tcgtactgca aatgtatatt gtaagtaa
//
LOCUS       DANLXB010000340          607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.342, whole genome shotgun sequence.
ACCESSION   DANLXB010000340 DANLXB010000000
VERSION     DANLXB010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.342"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..412
                     /locus_tag="PXD41_002641"
     CDS             <1..412
                     /locus_tag="PXD41_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290107.1"
                     /translation="NFYMWGMMFLYINKEHSILYYADHIIHECAHTALNIINATDELV
                     TNSADERFKAPLRKDTRPMIGLFHALFVLHRICSSFQKMKEKIDDVYYDEFNHRLNDN
                     LLKLHETYQTVRENAKTTEIGEKILNEIAKTWKL"
BASE COUNT          208 a           77 c           96 g          226 t
ORIGIN      
        1 aaatttttat atgtggggaa tgatgttttt gtatataaat aaggaacact ctattcttta
       61 ttatgcagat catataattc atgaatgtgc tcatacagct cttaacatta taaatgcaac
      121 tgatgaatta gtaacaaatt cagctgatga acgttttaaa gcacctttaa gaaaggatac
      181 tcgtcctatg attgggctat ttcatgcgtt gtttgtactc catagaatat gttcctcctt
      241 tcaaaaaatg aaagaaaaga tagatgatgt ttattatgat gaatttaacc atagattaaa
      301 tgataacctg ttgaagttac atgaaacata ccagactgtt agagaaaatg caaaaacgac
      361 agagattggt gagaaaattt taaatgaaat tgccaaaact tggaaacttt aatcaatctg
      421 aaattatgat gagaatgtta gttttcttta attcaatatt ctcatctaca ttaattgctt
      481 ttgctatttt cttttttatg gataatggta taaatgctca tgaggtatca ttcttggtat
      541 ctgttaaatt ttgggcgatt atgctttttt cattgtctat ttatattttt aaccagactc
      601 aaataag
//
LOCUS       DANLXB010000341          607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.343, whole genome shotgun sequence.
ACCESSION   DANLXB010000341 DANLXB010000000
VERSION     DANLXB010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.343"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..186
                     /locus_tag="PXD41_002642"
     CDS             <1..186
                     /locus_tag="PXD41_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6290108.1"
                     /translation="GTLKTKLNEFSLNQNIGRYFKQEVGITLHYKGVSSSVHAGFTKG
                     NTLQEQKFISLKVGYEW"
BASE COUNT          203 a           84 c          111 g          209 t
ORIGIN      
        1 ggaacactta aaactaagtt aaatgaattt tccttaaatc aaaatatagg ccgttatttt
       61 aagcaagaag tagggattac actccactat aaaggggtat caagttcggt acatgctggc
      121 tttacaaaag gaaatacatt acaagaacaa aaattcattt cactcaaagt tggatatgag
      181 tggtaagctt tatgtaacct gaagctacac ttgaatcggt tcaaacataa tgttactaaa
      241 aaagccttga aacattgatt ttcaaggctt tttaggtatc ggttgaaccg tataggatta
      301 taatttggtg ctggggtcat ctgaattgta tcacttcaag cattgataaa taagggtttt
      361 ggttaattca aattttattt gtactcctaa atatactcct aaaattcaaa gtgccttatt
      421 gcttaggcta ttttgtgtac aattattcgg atcgtgtata gggaaattta gttcgtagtt
      481 ttctatagta gtttaagttt ataaagaaaa aatttaaaac tttttgaaat tttacccact
      541 ttacccactg atttgttgga agccttgata tataaggctt tatagccagt gggaagcaag
      601 tgggtta
//
LOCUS       DANLXB010000342          604 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.344, whole genome shotgun sequence.
ACCESSION   DANLXB010000342 DANLXB010000000
VERSION     DANLXB010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.344"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>604
                     /locus_tag="PXD41_002643"
     CDS             <1..>604
                     /locus_tag="PXD41_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6290109.1"
                     /translation="EDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSIEWHR
                     KNEKEIPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEINIVRN
                     LSAHHSRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVAILWF
                     LVSQTSTNYHWLDKFEDLLNDFPNLPNTKVELMGFNREILE"
BASE COUNT          222 a           78 c          113 g          191 t
ORIGIN      
        1 tgaagattat tctctgatta atcaaaagtt cttaaaattt caatggaaat ctaattatgc
       61 ttatgcaaat tggctagaaa ctacagctaa taaaattaag cgtagtaaag atgattctat
      121 tgaatggcat agaaaaaatg agaaggaaat ccctttttgg gtaattactg aaacctggga
      181 ttttggtgca ttatctaagt tttactcatt gttaaatggg caacaccaaa ggaaaattgc
      241 taagaaattt aatgtagatg agaatacgtt aaagaattgg ttgaatgaaa taaacattgt
      301 aagaaacctt tctgctcacc attctcgtat ttggaacaga aaatttagcg atattgctat
      361 tcctaagcta gatgatcctc gttggtcgaa atttaaaaaa atgcagcagt atttttcaaa
      421 cttatcgctg gatgacaaag caaaggagag aattttcgga agggtagcta ttctgtggtt
      481 tttagttagt caaaccagca ctaattacca ttggttagat aagtttgaag atttattaaa
      541 tgacttccct aatttaccga atacaaaagt agaactgatg ggatttaaca gagaaatatt
      601 agag
//
LOCUS       DANLXB010000343          601 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.345, whole genome shotgun sequence.
ACCESSION   DANLXB010000343 DANLXB010000000
VERSION     DANLXB010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.345"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            3..263
                     /locus_tag="PXD41_002644"
     CDS             3..263
                     /locus_tag="PXD41_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL6290110.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            295..>601
                     /locus_tag="PXD41_002645"
     CDS             295..>601
                     /locus_tag="PXD41_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6290111.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     "
BASE COUNT          210 a           84 c          117 g          190 t
ORIGIN      
        1 taatgaaaaa attagtcctc tcgattttat ttgttatttc gcctatggct ttggcttata
       61 gctgcaatga ccctatccct tactgcaaag aaatgcaatc ttgcgagcaa gcaaagtttt
      121 atttaaatca atgcaatgcc ggtcgattag atagagataa cgatggcata ccttgtgaaa
      181 atgtttgtgg caagaaagga aagtccgaga aaaaagacga taagaaatca gataaatcaa
      241 aatctaaaaa aacttcaaat tagagacagg cgttgtgcct gattaaaagg ggtaatgatg
      301 aataaccagt cagtttggca cttattttgc gatgaatccg gtataagcgg taagcctttt
      361 tatgctttcg gtgcattatg gataagagaa gataaaatta gcttatttga aaaagaaata
      421 cagaaattac gagaaaagca ctattgcact gatgaaataa aatggcaagg tacaaattct
      481 aaacgcttta gtgaatttta tcgtgaattg gttagttttt tctttcaggc tgattattta
      541 ttttttaact gtattgtagt tcaacaagct attgtcaata aagcttttca taacggtgat
      601 t
//
LOCUS       DANLXB010000344          585 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.346, whole genome shotgun sequence.
ACCESSION   DANLXB010000344 DANLXB010000000
VERSION     DANLXB010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.346"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..296
                     /locus_tag="PXD41_002646"
     CDS             <1..296
                     /locus_tag="PXD41_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290112.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..>585
                     /locus_tag="PXD41_002647"
     CDS             324..>585
                     /locus_tag="PXD41_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290113.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQT"
BASE COUNT          214 a           97 c          107 g          167 t
ORIGIN      
        1 cagataccag atataacaag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtaacacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttcca aacac
//
LOCUS       DANLXB010000345          571 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.347, whole genome shotgun sequence.
ACCESSION   DANLXB010000345 DANLXB010000000
VERSION     DANLXB010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.347"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>571)
                     /locus_tag="PXD41_002648"
     CDS             complement(<1..>571)
                     /locus_tag="PXD41_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL6290114.1"
                     /translation="RDNNLRADAPLETISEAFKLDISKVYVALSKDLGITIKSPEQAA
                     TYVNDERYRRFNTLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDEAAIPTIFEYILG
                     IIWYKVSERQGNILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEAT
                     LADGNNQRRMEMEPVSRHLGDYRIRFNNPF"
BASE COUNT          171 a          115 c           78 g          207 t
ORIGIN      
        1 aaacggatta ttaaatctaa tcctataatc gcctaaatgt cttgaaacag gctccatttc
       61 cattcttctt tgattatttc catctgcaag ggttgcttca agcaataatg aatgtttcgg
      121 ataagaggtg cacgcttcat attcatatat aatgtctgcg taacctccag ctgcgtgggt
      181 cttcggcaat aaattggctt ctaatgataa cttcatgaaa tccaaaatat ttccttgtct
      241 ttcgctcact ttgtaccata taattcccaa aatatattca aaaatagtag gtattgcagc
      301 ctcatctgta acaagttctt caatcctttt atcatcacgt ttctcaaaac aatttagtaa
      361 ctctataagc acagaatcgt taaatttctt atcgatcaaa gtattaaatc ttctgtatcg
      421 ttcatcattt acataagttg cagcttgttc cggactctta attgtaattc ctaaatcttt
      481 acttaaagct acatatactt tgctaatatc taacttgaat gcttctgata tagtttcaag
      541 tggggcatca gccctgagat tattatctct a
//
LOCUS       DANLXB010000346          569 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.348, whole genome shotgun sequence.
ACCESSION   DANLXB010000346 DANLXB010000000
VERSION     DANLXB010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.348"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>569
                     /locus_tag="PXD41_002649"
     CDS             <1..>569
                     /locus_tag="PXD41_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6290115.1"
                     /translation="KTTLKPYQEETISRVIQDEINKKMAEIGTTTLEIGGKEHELEDL
                     ENQINALALTDEEKLAEDVENDLISKLDEAKAALAKNQQTLKEKRDELLGLNNKLDSS
                     PLVKKGKNALAEGTNAFASGENAIAFGTDSQATGNNAIALGANSKANAESAIAIGKGA
                     QALKEKALALGENAIANRASAIAIGDNHS"
BASE COUNT          226 a          102 c          115 g          126 t
ORIGIN      
        1 caaaacaaca ttaaaaccat accaagaaga aacaatatct agggttatac aagatgaaat
       61 taataaaaaa atggctgaaa taggtactac aacactagag attggtggta aagaacacga
      121 gctcgaggat cttgaaaacc aaattaatgc tttagcttta actgatgaag aaaaacttgc
      181 ggaagatgtg gaaaatgatt taatctcaaa gcttgatgag gctaaagcag ccttagcaaa
      241 aaaccagcaa acgctcaaag aaaagcgtga tgaattacta gggctaaata acaaattaga
      301 tagctcacca cttgttaaaa aaggtaaaaa tgcacttgca gaaggcacga atgcctttgc
      361 ttctggtgaa aatgccatcg cattcggcac ggattcacaa gctacaggta ataacgctat
      421 cgcactaggt gcaaattcaa aagcaaacgc agaaagtgcg attgcaattg gtaaaggtgc
      481 acaagcatta aaagaaaaag cccttgcttt aggcgaaaat gccattgcca acagagcatc
      541 tgctattgcg attggtgata accattcat
//
LOCUS       DANLXB010000347          569 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.349, whole genome shotgun sequence.
ACCESSION   DANLXB010000347 DANLXB010000000
VERSION     DANLXB010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.349"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
BASE COUNT          182 a           85 c          101 g          201 t
ORIGIN      
        1 ttataagcag gatataaaat ttttaatatt tcaaataaaa agtgagctaa aaaagatttt
       61 aactcacttt catttcgtag gctcaaatta gacctactac gccgatataa aaagttggtc
      121 tttttatatc aaagctaagc tcttaacaac gagtagtaga ttctctaata tgtttagctg
      181 taactttcat tggcttttgt tgcgctgtag tgtttttcat attgttctcc agattttgtg
      241 agtaattagt aagacctttt cttttgaaaa ggaccgagct ttcaaagtgg tctgattacc
      301 tattgagcaa tcagcttgct tttcaagccc catgtcatta tatcataacc attgttttta
      361 gtcaatacca ttttggggaa tgcatggaag gcgagtacaa attgaaggct gatgtcacga
      421 tctatcatga tacgccttat acaaaagttc tctttggaag tacatatatt gagattttag
      481 acgatgacca gtattacttt tcgattttag aaaaacgaag atggaagtta gaaaatttac
      541 ctgatgaatt agttgatgta ctaaaagag
//
LOCUS       DANLXB010000348          566 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.350, whole genome shotgun sequence.
ACCESSION   DANLXB010000348 DANLXB010000000
VERSION     DANLXB010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.350"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
BASE COUNT          187 a          116 c           77 g          186 t
ORIGIN      
        1 atacttcatt gatagccttc caagaaagta aatcttgcta ctctatagca cctttcatta
       61 aaagtggttg tttctcagaa taactttcac gaaattcttg ataagaaatt ggaaattgaa
      121 ttttcatttt catctccact agccttgata atctgtacca tcaccacaat cgtagtttga
      181 gccagattgg ttattattcg ttctacctgg aactccaaac gtaggcttta ttggtaaaga
      241 tgatggaatt aattctttta caccgctagg taaagaattt tcatgtattg taataggtag
      301 gctcctcgct aaatcaaggg ctaaattaac agaagtactg gataaaccgc ctaaagcccc
      361 cctcttgcaa accctgtagc aaaagcaacg ccataagata caagatctgg ttgattagcc
      421 ttattttcag aattccctcc aactactaag cttaattgta aaattgatgg ttctttcatt
      481 tcattctccc tttaatctaa ttctgatcac aaaaaccaat attaaaaata attctaaaaa
      541 taatactata cttacaacat cttcca
//
LOCUS       DANLXB010000349          563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.351, whole genome shotgun sequence.
ACCESSION   DANLXB010000349 DANLXB010000000
VERSION     DANLXB010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.351"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..447)
                     /locus_tag="PXD41_002650"
     CDS             complement(<1..447)
                     /locus_tag="PXD41_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6290116.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVIS"
BASE COUNT          167 a           94 c          108 g          194 t
ORIGIN      
        1 tgatataaca ctattggcta atattgcttg ttgtgcttgt ttttcacgta cacgctctaa
       61 aatagtgtca tattgagcaa tctgactctt taaagcatct tgtaattgtt gattaacaga
      121 gccttgtttt tcttgttcag caatttgagt acgtaactct tcaatttgat taactaaatc
      181 acggaagttt tctaactcca cattgaattc ctggggggag atattaccac cggttgcaat
      241 ggcattcttg ccgattgctt gagaacctgt gcctaacgca aaactacctt cacctacagc
      301 aaggttattg gtgccagtgg tgttgcctaa aggaagtgga ttggcataag agacttggct
      361 aagccctatc agagcgctaa gcaaggtaac agtagggagc tcttttgtgt gttttttata
      421 cagatgggtg aaactaaagt ttggcatatc aaaatttcct cattaaaact tttacttttc
      481 attcttaaaa aaatgctccg tgtcataata tttaatttga ttaaatgaaa taggaaaaga
      541 ttaaatttgt gaaaatattt tga
//
LOCUS       DANLXB010000350          560 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.352, whole genome shotgun sequence.
ACCESSION   DANLXB010000350 DANLXB010000000
VERSION     DANLXB010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.352"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>560)
                     /locus_tag="PXD41_002651"
     CDS             complement(<1..>560)
                     /locus_tag="PXD41_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290117.1"
                     /translation="FLSACFNESYDFRGKEFEEPVQAILVESDKIYFIGSTIDAIFDK
                     TLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSPQFIAKNLTMSD
                     IQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQPIIAKAKSYQKS
                     IEFSFDDTISVIAAPITIPASIILFV"
BASE COUNT          178 a           90 c           88 g          204 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc
//
LOCUS       DANLXB010000351          543 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.353, whole genome shotgun sequence.
ACCESSION   DANLXB010000351 DANLXB010000000
VERSION     DANLXB010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.353"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..504)
                     /locus_tag="PXD41_002652"
     CDS             complement(<1..504)
                     /locus_tag="PXD41_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290118.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSI"
BASE COUNT          212 a          100 c           85 g          146 t
ORIGIN      
        1 aatgcttaat tggaaaaagg cggaagaagt gatgttatat aaacggtatt cttgttccga
       61 accaaaaaaa cgtggcatca ttgcattgct ggataataaa aaatccacca taaacggcaa
      121 acctaataag gctgtcacac cacaaatcca ttgaatagca atgccgattt ttaaatcacg
      181 aacgaataaa gttttacctt gttggttatg ataaaaaaca ttataaatcg caatcccgaa
      241 cacaaacaaa atcagcattt tgacatacat tgccagcaca ccaatttctt ttgtactgtt
      301 aatcaataat ggaataatgc taaagccgat taatgcaata attgcaatca ggctatcttt
      361 aggaataata atgccattcg atttgccctt gattatttgg aaaaccaaat agccacaagc
      421 aacaagcccg actacaaacg acattcttaa aaaatggaaa aaccacggat cgtaaagata
      481 aaataagtta atgagtgctg acatttcaga cctattatga atttcgctga gtaaaattac
      541 gtt
//
LOCUS       DANLXB010000352          539 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.354, whole genome shotgun sequence.
ACCESSION   DANLXB010000352 DANLXB010000000
VERSION     DANLXB010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.354"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(181..420)
                     /locus_tag="PXD41_002653"
                     /pseudo
     CDS             complement(181..420)
                     /locus_tag="PXD41_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT          171 a          107 c           79 g          182 t
ORIGIN      
        1 aaaataatgg cataagtgac tcacttatgc cattttttat atgctttaac gtttattaaa
       61 aatcttaaaa atattgttgg cttcctctaa ataatgcaag attttccgca ctcatattgc
      121 cgttaccaac acctgctacg acaatacctt gatagcctac atctaacaag gctttagtgg
      181 gccaattttc acaatctgct cacctttgat attcgccaat gttttcattt ctggcactgc
      241 ttcaattaag gtttcgatat tcaattgccc tgcttgataa gcactactat ttgcattctg
      301 ctgactacca gcaatcgttc cgcctgtcgc taaaatagtg atattaggta attctgccgc
      361 attagctgtt acaaataagc cacctaacat tgctgctaat gctaattttt tgaatttcat
      421 ataaggctcc ttaattaaaa aaactaaaga cagataatac cgataaatca atgtaaatta
      481 tttgatctga tacataaaag cgggaattaa ttactgggta gaaataggtt atatcgcta
//
LOCUS       DANLXB010000353          534 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.355, whole genome shotgun sequence.
ACCESSION   DANLXB010000353 DANLXB010000000
VERSION     DANLXB010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.355"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>534
                     /locus_tag="PXD41_002654"
     CDS             <1..>534
                     /locus_tag="PXD41_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL6290119.1"
                     /translation="YLKQLLKTSIDVSGSIVRPFIAVVKCLTELEFLSYDEFTYFVPL
                     IRDDESAKQIISDIKLYREGKILPEEIIYKRLMQMENYKLAQEEFIASDVDENLICLV
                     GMNRKSRNYDKPYYKLYENLKKVFLDGENIYESLLNSAKNINQKPGILWRSLLFKTTN
                     IGVVRKNGKSSIHKQCP"
BASE COUNT          203 a           68 c          101 g          162 t
ORIGIN      
        1 ctatctaaaa cagcttctta aaacgagtat agatgtaagt ggtagtatcg ttagaccgtt
       61 tattgcggtt gtaaagtgcc tgacggaact tgagttttta agttatgacg agtttactta
      121 ttttgttccg ctaattagag atgacgaaag tgcaaaacaa atcatatcgg atattaaatt
      181 atatcgagaa ggtaaaattt taccggaaga aataatttat aagaggctta tgcaaatgga
      241 aaactacaaa cttgcacaag aagaatttat agcctctgat gttgatgaaa atctaatatg
      301 tttagtggga atgaatcgta aaagcagaaa ctatgacaag ccgtactata aattgtatga
      361 gaatttaaag aaggtatttc ttgatggcga aaacatttat gaatcgctat taaattctgc
      421 aaagaatata aatcaaaaac ctggaatatt gtggagaagt ttactcttta aaacaaccaa
      481 tattggtgtt gtaagaaaaa atgggaagtc ttcaattcac aaacaatgcc catt
//
LOCUS       DANLXB010000354          530 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.356, whole genome shotgun sequence.
ACCESSION   DANLXB010000354 DANLXB010000000
VERSION     DANLXB010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.356"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            184..>530
                     /locus_tag="PXD41_002655"
     CDS             184..>530
                     /locus_tag="PXD41_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290120.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVL"
BASE COUNT          188 a           83 c          102 g          157 t
ORIGIN      
        1 aatcctttat taatgttgat ggggtaagtg gtcaattaga atcaaaatgt attaagctca
       61 gtttaaataa agaaaatgaa attttgcaat ttgaacaatt aggacgggtt tatgtggcag
      121 caaaaaataa acgtagcacc tgcaaagatt agtttatctg cttttagcct aattgaagta
      181 ttaatggcta gtgcattagg ggcgttttta ttattgcttg ttgcttcaag ttatgccgat
      241 ttctattaca cacaaaccaa acaaaaagaa cagctctact tgcaagcaga agctcaccag
      301 ttactaaact acttccaaca gcattttcaa cacattggct atcaaggctc tcacagaaca
      361 gacagtaatt ttgatttatt tcagcaagca gggaaaagcc tgaatattgt gcataaaaat
      421 tgcattattg gattttacga tttaaaccaa gatggctgtt tgggaaaacg taagacaaaa
      481 acggccgctt gtaagttagg aacagtgaat aataccagag aggtgttaaa
//
LOCUS       DANLXB010000355          529 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.357, whole genome shotgun sequence.
ACCESSION   DANLXB010000355 DANLXB010000000
VERSION     DANLXB010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.357"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..521
                     /locus_tag="PXD41_002656"
     CDS             <1..521
                     /locus_tag="PXD41_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6290121.1"
                     /translation="LKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIYISPE
                     INKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQPMSQN
                     QLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLGYIEY
                     DVEMLRDTVNLL"
BASE COUNT          183 a           88 c           95 g          163 t
ORIGIN      
        1 ttttaaaacc tagctggttt attcttgcta tcattatgac attgagatgc acaggaatta
       61 ggagagggca attggttaaa ctgaaaatcg gtgatgttaa tttatcaaat aggacgatct
      121 atatttcacc agaaattaat aaaaaccatg attatcatat agtaccgata tccgattcac
      181 tttatcccca tatagaaagg ctgattcagg agttaaagat ccataaacaa acggatgatt
      241 gccagttatt taacctcaat ttattttctc gttatactcg taggaaaggt cagccgatga
      301 gccaaaacca gcttactcat atatttaggc atatttccga tttggttggc ttcacgtcat
      361 caccacatag atttcggcat acagtagcta ctcaattgat gaagaaacct gaaaatgttt
      421 atgtagttaa gaaattatta ggtcataaag atatcagcgt tacattagga tatattgaat
      481 acgatgtgga aatgctacga gacaccgtga acttactcta ataaaagag
//
LOCUS       DANLXB010000356          507 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.358, whole genome shotgun sequence.
ACCESSION   DANLXB010000356 DANLXB010000000
VERSION     DANLXB010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.358"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>507)
                     /locus_tag="PXD41_002657"
     CDS             complement(<1..>507)
                     /locus_tag="PXD41_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290122.1"
                     /translation="NDLNFSSCLYIKPNTSKLYVILNGALIKEPRNPLIYHRHSWHLE
                     FDGSVLYIADPTLFKYESINLAWYVGDKDTDLYPYLAEFVTSVATHLNVETDHIVTYG
                     SSGGGFAALQLGARIGNGVVTVCINPQTNIMKYVPSHRNAFLNACFDFNAEEYDSLSN
                     QEKFNALV"
BASE COUNT          180 a           87 c           76 g          164 t
ORIGIN      
        1 aatactaaag cattaaattt ctcttgatta gaaagactat cgtactcttc cgcattaaag
       61 tcaaagcaag cgtttaaaaa ggcattacga tgacttggta catatttcat gatgttggtt
      121 tgtggattaa tacaaacggt aactacaccg tttccaattc ttgctcccaa ctgtaatgca
      181 gcaaatccac caccacttga accataagta acaatatggt ctgtctcaac attcaaatgt
      241 gtagcaacag aagttacaaa ttcagctaag tatggatata aatcagtatc tttatctcca
      301 acataccaag ccaaattaat tgattcatat ttaaataatg ttggatctgc gatatataga
      361 actgagccat caaattctag atgccaacta tgtctatgat aaattaaggg atttctgggt
      421 tctttgatta atgcaccatt taatatcaca tataattttg atgtattagg tttgatatat
      481 agacacgatg aaaaattaag atcatta
//
LOCUS       DANLXB010000357          505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.359, whole genome shotgun sequence.
ACCESSION   DANLXB010000357 DANLXB010000000
VERSION     DANLXB010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.359"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..233
                     /locus_tag="PXD41_002658"
     CDS             <1..233
                     /locus_tag="PXD41_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290123.1"
                     /translation="LVANGIVNEPSVDCFSQEIAQFTGCHIFSSLYIAFNTQRSFKSH
                     WDSRDIFAVQMQGKKRWIIHTPTFKKTIVYAS"
     gene            223..>505
                     /locus_tag="PXD41_002659"
     CDS             223..>505
                     /locus_tag="PXD41_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL6290124.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAE"
BASE COUNT          150 a           80 c          101 g          174 t
ORIGIN      
        1 cattagtcgc aaatggtatt gtaaatgaac caagtgttga ttgcttctct caagagatag
       61 ctcaatttac aggctgtcat attttttcaa gtttatatat tgcgtttaat actcaaagat
      121 cttttaaaag ccattgggat agtcgtgata tttttgcagt tcaaatgcag ggtaaaaagc
      181 gttggattat tcacactcca acatttaaaa aaaccattgt ttatgcatcg tagtaaagat
      241 atgcctgaat atgctcctaa tcttgatgat gtatatatgg atattgtatt agaagctgga
      301 gatgttcttt atttacctcg tggctggtgg cacgatccta ttcctgttgg agaagaaact
      361 gtgcatttag ctgtaggcat ttttcctgct tatactcata actatctgac ttgggtatct
      421 caaaatatgg ttgagaaaga aattgcccga gcttctttat cgcattatga gtcagataaa
      481 gagttgatag cacagttggc agaac
//
LOCUS       DANLXB010000358          497 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.360, whole genome shotgun sequence.
ACCESSION   DANLXB010000358 DANLXB010000000
VERSION     DANLXB010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.360"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(175..>497)
                     /locus_tag="PXD41_002660"
     CDS             complement(175..>497)
                     /locus_tag="PXD41_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL6290125.1"
                     /translation="RAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIGNYIVDFV
                     CFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAVLDTIFYE
                     ITRG"
BASE COUNT          169 a           91 c           72 g          165 t
ORIGIN      
        1 agagggttat tctttcaaaa attcaaaaca actaaaaaat tagcattctc cttttgtagg
       61 agaaaatgtt gttctttcaa aattctaaaa taaccgcaaa attaactctc gccccttgtg
      121 ggagagagac agataaatca ttcgttcaga atgatttatc agagagaggg gaaattaccc
      181 tctcgtaatt tcataaaaaa ttgtatctaa aacagcctct agatcgctat gaatttgatt
      241 attccaaaat cttaaaaccc tgaacccctg accgtttaaa aaatgagttc gtagattatc
      301 atagttttgt tgatctaaat gttgtgaacc atctaattca ataactaatt tcgctgaaaa
      361 gcaaacaaaa tcgacaatat agttacctat aacttgttgc cgtttaaatt ttatcgctaa
      421 aaatcgtttt gctcttaatg cttgccaaag aaccttctct gcttctgtca tattagtccg
      481 aagctgttta gctcttt
//
LOCUS       DANLXB010000359          480 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.361, whole genome shotgun sequence.
ACCESSION   DANLXB010000359 DANLXB010000000
VERSION     DANLXB010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.361"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>480
                     /locus_tag="PXD41_002661"
     CDS             <1..>480
                     /locus_tag="PXD41_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL6290126.1"
                     /translation="KINAEKDSITQLGNKNIFCNITSKLSPLFHCPILLSEHFQLWLL
                     AESTVGSLINQDNAIFLQLDDTVNLSVLLSGSLLSKQSKMNVDNMLMPRFSHLSDEIF
                     PELDEIHRYKLVNQVTFPAIVRLIDRYLPNNLKSQEQKISWLCQKIDENQPLALAILS
                     "
BASE COUNT          160 a           78 c           80 g          162 t
ORIGIN      
        1 aaaattaatg cagaaaaaga cagtattact caattgggaa acaaaaatat attctgtaac
       61 attacatcta aactctcgcc gctgtttcat tgtcctattt tattaagtga acattttcag
      121 ctgtggttgc ttgcagaatc tacggttggc tcattaatta accaagataa tgctattttt
      181 ctacaattag atgatactgt gaatctaagt gtattgctta gtggtagttt actgtctaaa
      241 caatcaaaga tgaatgttga taatatgctt atgcctagat ttagccatct cagtgatgaa
      301 atattccctg aactagatga aattcatcgc tataaattag tcaatcaggt gacgttccca
      361 gctattgtga gactcattga tcgttatttg cctaataatt taaaaagtca ggaacagaaa
      421 atcagctggc tttgtcaaaa aattgatgaa aatcaaccgc ttgcattagc tattttatcg
//
LOCUS       DANLXB010000360          479 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.362, whole genome shotgun sequence.
ACCESSION   DANLXB010000360 DANLXB010000000
VERSION     DANLXB010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.362"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(116..191)
                     /locus_tag="PXD41_002662"
     tRNA            complement(116..191)
                     /locus_tag="PXD41_002662"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXD41_002663"
     tRNA            complement(195..269)
                     /locus_tag="PXD41_002663"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXD41_002664"
     tRNA            complement(313..397)
                     /locus_tag="PXD41_002664"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
BASE COUNT          149 a          110 c          109 g          111 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtca
//
LOCUS       DANLXB010000361          473 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.363, whole genome shotgun sequence.
ACCESSION   DANLXB010000361 DANLXB010000000
VERSION     DANLXB010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.363"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>473
                     /locus_tag="PXD41_002665"
     CDS             <1..>473
                     /locus_tag="PXD41_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290127.1"
                     /translation="CSKALGFSGGFAGFQEDYLSNLTQFMEKHGLLYLVDLTKQKYPV
                     NDMCMTRSLALKKQDISERIFFSGKEIPKRIFTGFNFRYDMHLANGFRIGNSLKTPYS
                     DIGICEDINEALKNPSIKIDCRDGTIRSMADVVIGRYLDKVLFYYFNLIGDQLVQ"
BASE COUNT          167 a           64 c           89 g          153 t
ORIGIN      
        1 ttgctcaaaa gctttaggat tttctggagg ctttgcaggg tttcaagaag attatttatc
       61 taatttgacg caattcatgg aaaaacatgg gctcttatat cttgtagatt taacaaaaca
      121 aaaatatcca gtaaatgata tgtgcatgac aaggagctta gctctgaaaa agcaagatat
      181 atctgaaaga attttcttta gcggaaagga aatccctaag agaatattta ctggatttaa
      241 tttccgatat gatatgcatt tagctaatgg ttttcgtatc ggaaattcct taaaaacccc
      301 atattctgac ataggtatat gtgaagacat aaatgaagca ttaaaaaatc catcaataaa
      361 aattgattgc cgtgatggca caatcagaag tatggcagat gtagtcatag gtagatatct
      421 tgataaagta ttgttttatt attttaactt gataggtgat cagttagtcc agc
//
LOCUS       DANLXB010000362          455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.364, whole genome shotgun sequence.
ACCESSION   DANLXB010000362 DANLXB010000000
VERSION     DANLXB010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.364"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(28..450)
                     /locus_tag="PXD41_002666"
     CDS             complement(28..450)
                     /locus_tag="PXD41_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290128.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFSVTFTALFTMMRLLHIFILSDLLDKIGCNTYE
                     LPKIEDIHKYEMLSILKIQAAKENNAELRYYVKKKKKK"
BASE COUNT          153 a           66 c           65 g          171 t
ORIGIN      
        1 aacgtcgaga tattgatatt ctgactctca ttttttcttc ttctttttca catagtatct
       61 caactctgca ttattttcct tagctgcttg tatttttaat attgaaagca tttcgtattt
      121 gtgtatatct tcaattttag gcagctcata agtgttacat cctattttat caagaaggtc
      181 tgataaaata aaaatatgta ataaacgcat cattgtaaat aatgcagtaa atgtaactga
      241 aaaaaagaaa attgctgcaa tataatcaat ggtttttgtg agatatattt ccttttgctg
      301 tatcgcaata tagataggca cttgatgaac aagttggaag taagcatcca aataaacaac
      361 tatcaatatg aagcctaaaa accattctgt ttgcataaga acattgatag ggctgttttt
      421 tgtgctaaaa atttctttaa ttgaactcat aattt
//
LOCUS       DANLXB010000363          442 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.365, whole genome shotgun sequence.
ACCESSION   DANLXB010000363 DANLXB010000000
VERSION     DANLXB010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.365"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            37..>442
                     /locus_tag="PXD41_002667"
     CDS             37..>442
                     /locus_tag="PXD41_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290129.1"
                     /translation="MELGKTTETDVKEMYNLEPEGVNKYSKGNQYFIDPTQLDLEDLK
                     STLIIFDEKGVLVFVGSEFNSISSIEDSKNRYKKFDYLYKILASKYKLVKKERPFVGD
                     QYAKFKDGNSEIELSEPHMGGFKINLTYAKKEF"
BASE COUNT          173 a           59 c           75 g          135 t
ORIGIN      
        1 agtacttctg tattagctga accaaccgtt tttaaaatgg aactaggtaa aacaacagaa
       61 acagatgtaa aagaaatgta taaccttgaa ccggagggtg ttaataaata cagcaagggt
      121 aatcagtatt ttattgatcc aacgcaatta gatttagaag atcttaaatc aacgcttatt
      181 atctttgatg aaaaaggggt attagttttt gttggttccg agtttaattc tatatcttct
      241 atcgaggatt caaaaaaccg gtataaaaaa ttcgattatt tgtacaaaat actagcaagc
      301 aaatataaac ttgtaaaaaa agaacgtcca tttgtaggcg atcaatatgc taaatttaaa
      361 gacggtaatt cagaaatcga attatcagaa ccacatatgg gtggttttaa aattaacttg
      421 acttatgcaa aaaaagaatt ct
//
LOCUS       DANLXB010000364          431 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.366, whole genome shotgun sequence.
ACCESSION   DANLXB010000364 DANLXB010000000
VERSION     DANLXB010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.366"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>431
                     /locus_tag="PXD41_002668"
     CDS             <1..>431
                     /locus_tag="PXD41_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6290130.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          126 a           78 c          105 g          122 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaagacagc aattagtgca gcagatatgc tcaatgataa agtcctaccg
      361 ttctttgagt cccaaggatt accgatgttg cgtattctta ccgaccgagg cagtgagtac
      421 tgtggcaagg t
//
LOCUS       DANLXB010000365          428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.367, whole genome shotgun sequence.
ACCESSION   DANLXB010000365 DANLXB010000000
VERSION     DANLXB010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.367"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>428
                     /locus_tag="PXD41_002669"
     CDS             <1..>428
                     /locus_tag="PXD41_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6290131.1"
                     /translation="TAIPNFLEKVNNDFAISARNRDLYSHYLPYQGIDDWENSNFNFR
                     TLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNYHLVVAKMSYEN
                     LKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPL"
BASE COUNT          155 a           72 c           67 g          134 t
ORIGIN      
        1 taacagccat tcctaacttc ctggagaaag ttaataatga ttttgctata agtgctagaa
       61 atagagactt atatagtcac taccttcctt atcagggtat tgatgattgg gagaattcta
      121 attttaactt tcgaacacta aatggagttt attatgatga taatctaact tcaacagaac
      181 tcctgcgaaa atttatgatt caaagagatt ataacactct ttatgctcta agttctgctc
      241 gcacaggaaa tgctgatagt ctggctaaaa attaccatct tgtagttgcg aaaatgtcct
      301 atgaaaacct gaaaaaagaa ttatccaaga aacccgactc tacatttaat aaactgaaaa
      361 agctgtatga aaccaatggt gaattcttaa atgaatatat tttagacaat ttccgaggaa
      421 atccactt
//
LOCUS       DANLXB010000366          424 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.368, whole genome shotgun sequence.
ACCESSION   DANLXB010000366 DANLXB010000000
VERSION     DANLXB010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.368"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            150..>424
                     /locus_tag="PXD41_002670"
     CDS             150..>424
                     /locus_tag="PXD41_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL6290132.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTET"
BASE COUNT          162 a           45 c           96 g          121 t
ORIGIN      
        1 atttgataaa taccatgaaa tgccattaga gactgtagat tggcatgatg ggatgataaa
       61 agaggctact ggagagtata agtcatagtg attataagat agtgagaaag aatacttatt
      121 ttgaaaggaa tacatgggaa ttgatacaga tgaagaatag aattgaacat cctaagattt
      181 ttatttcata tgcttgggga tcacaggaac atgatgagaa ggttattgct ttagctacaa
      241 atcttaaagg agatggtata gatgtcattt ttgataaatg gcagctaaaa gaaggcaatg
      301 atacctttaa attcatggaa aaaagtgttt tagatgagag tattaccaat gtactgattc
      361 ttatagatcc tatttatgca aagaaagcaa atgaaagagc cggtggcgta ggtacagaaa
      421 caca
//
LOCUS       DANLXB010000367          418 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.369, whole genome shotgun sequence.
ACCESSION   DANLXB010000367 DANLXB010000000
VERSION     DANLXB010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.369"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
BASE COUNT          144 a           78 c           59 g          137 t
ORIGIN      
        1 gatagctcga aatatctgtt tataaaataa cctaattaat aaggcacttt ggattttagt
       61 tatatcctga aaaatcaaat tataaagaaa ccttatctat caatacttga agccattaag
      121 ttcaagtctc gaccaggcac catttgacta aatttagttc aacagagcta aacgaaaaaa
      181 ccttagaaag cctgtaaaat caacgtttac aggctttttt gttgttttag ctcaatggca
      241 ctaaacattt catatcgcaa attttaagta gcctagcaaa ttttccgcca aatatgaccg
      301 cttgtaatgc cgttaggtta ttgcctggcg gcctttttgt tacagctctt atatttttta
      361 caccaaagtt cagaaaaagt cacttttatc actaacatta agatgaaacc ttgataca
//
LOCUS       DANLXB010000368          417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.370, whole genome shotgun sequence.
ACCESSION   DANLXB010000368 DANLXB010000000
VERSION     DANLXB010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.370"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            89..>417
                     /locus_tag="PXD41_002671"
     CDS             89..>417
                     /locus_tag="PXD41_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL6290133.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     SFQELNT"
BASE COUNT          140 a           66 c           71 g          140 t
ORIGIN      
        1 ttgaatatat tccttttgcc agcatcattg gtgcaatcag cattattccg attctttata
       61 taatgacggc aaaagtagga aaaaccgtat gaatttaatt atttgttgca cgcccttgca
      121 agtgttgatt gctgaaaaaa tcattgaaat gcaccctaat gagcgattct atggggtgat
      181 gctttctacg gtaaaaaacg cgaaatttga tttttaccaa gctagattag cccaaaagtg
      241 cgaacaattt tttgcgatgc aacaacatag cgagcgtatt caattattaa aagaaattat
      301 ttatttaaaa cgtacttttg gcggtaagaa gtttaataaa gtctttttag caaatatcaa
      361 tgagttagaa attcaatttc tgttaagtgc catttcattt caagaactca atacctt
//
LOCUS       DANLXB010000369          416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.371, whole genome shotgun sequence.
ACCESSION   DANLXB010000369 DANLXB010000000
VERSION     DANLXB010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.371"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            6..317
                     /locus_tag="PXD41_002672"
     CDS             6..317
                     /locus_tag="PXD41_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HDL6290134.1"
                     /translation="MAKSLDAKREELTNEIRDILKNAEELFNETSDSSTEEYKKLKDK
                     LAKQFDDVKDRFATLKDDTVDSARTVVKQTDTLVQDNPYKAITVAGVVGLLLGVLISR
                     R"
BASE COUNT          155 a           48 c           80 g          133 t
ORIGIN      
        1 caattatggc taaaagctta gatgcaaaac gtgaagagtt aacaaacgag attcgcgata
       61 ttttgaaaaa tgcagaggaa ttatttaatg aaacatctga ttcttctacg gaggaatata
      121 aaaagttaaa agataaatta gcaaaacagt ttgatgatgt aaaagatcgt tttgcaacat
      181 taaaagatga taccgttgat agtgcaagaa ctgtagttaa acaaactgat accttagttc
      241 aagataatcc gtataaagca attaccgttg ccggtgtggt agggttatta ttaggtgttt
      301 taatttctag aagataatta tctgtaattc gtcattaagt cattaagcca cgccatattt
      361 ggggtggctt attatttaat ataaggaatg gttataatgt tagataatat taaatc
//
LOCUS       DANLXB010000370          408 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.372, whole genome shotgun sequence.
ACCESSION   DANLXB010000370 DANLXB010000000
VERSION     DANLXB010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.372"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(173..>408)
                     /locus_tag="PXD41_002673"
     CDS             complement(173..>408)
                     /locus_tag="PXD41_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6290135.1"
                     /translation="LRHSHVAYLIEQGFSPVVIAERLGHESISITLNYAHLYLGRDKT
                     EKKESVIGAIKKHKRKIDKTIEQSHSMSNDMEL"
BASE COUNT          124 a           82 c           45 g          157 t
ORIGIN      
        1 ttacatcaga aacattaaga cttgccataa tccccccttg ccacatttca atctattcag
       61 tagacattat agcatatttt acctgttttt tctatatttt tggctaaaaa catgatgcta
      121 attgcttcaa aaaaatggag agtatcaaat ttataatact ctccatgtat ctctatagct
      181 ccatatcgtt actcatacta tgactctgct caattgtttt atctattttc cttttatgtt
      241 tcttaattgc tccaataact gattcctttt tctctgtttt atccctacca agatataaat
      301 gtgcatagtt taaggttatt gagatacttt catgacctaa tctttctgca attaccacag
      361 gagaaaatcc ttgctctatc aaataagcaa catgagaatg tcttaaat
//
LOCUS       DANLXB010000371          407 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.373, whole genome shotgun sequence.
ACCESSION   DANLXB010000371 DANLXB010000000
VERSION     DANLXB010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.373"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            37..>407
                     /locus_tag="PXD41_002674"
     CDS             37..>407
                     /locus_tag="PXD41_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6290136.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLH"
BASE COUNT          145 a           80 c           71 g          111 t
ORIGIN      
        1 cttatagtaa aagcagttaa aaattagaga gtttatatgt ctaaaaaccg tctagaacaa
       61 attttactat tcctaaaaaa ccacaatatt gctaccgtag agcaactggt aaaagtgact
      121 gaggcttctc ctgcaactat ccgccgtgat ttaataaaat tagatgaaga aggcgtcgtg
      181 attcgcacac acggaggggt cagcttaaac caatttatac cgtttcaacc aacaacaaat
      241 gagaagcaat ttaagcaaat tgtcgaaaaa gaacgcatag ctgaatatgc cgtttcgctt
      301 atttcaccgg gaaattctat tttattagat gctggcacta caacgctatg cattgcgaaa
      361 aaaatcgctc atatgccact tcgagtgatt acaactgatc tacatat
//
LOCUS       DANLXB010000372          407 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.374, whole genome shotgun sequence.
ACCESSION   DANLXB010000372 DANLXB010000000
VERSION     DANLXB010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.374"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            233..>407
                     /locus_tag="PXD41_002675"
     CDS             233..>407
                     /locus_tag="PXD41_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6290137.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDI"
BASE COUNT          159 a           69 c           57 g          122 t
ORIGIN      
        1 tgatagtctt tatatgctgc ataaagaggc aaaattactg atgcagctga cgctaaaata
       61 cctagcattc catataatgg attatattga ttattcatga atgtttcttc tcctgtgagc
      121 ttaagataaa atttactcta ttctaaattg ctcaataaac tgctacaatc cacaaaattt
      181 atcctttacc acatcaagtt atatcccaac tcccacaatc tataggtgtt atatgaaagt
      241 acacgaaaaa atcaaattac tgcgagaaaa taatcattgg acacaagatg aaatggctca
      301 aaaattaagt atgacaacca aaggttatgc aaaaatagaa cgtggtgaaa ctatctctaa
      361 tttaccgaaa atagaacaaa tcgcagaagt atttaatatg gatattt
//
LOCUS       DANLXB010000373          390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.375, whole genome shotgun sequence.
ACCESSION   DANLXB010000373 DANLXB010000000
VERSION     DANLXB010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.375"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>390)
                     /locus_tag="PXD41_002676"
     CDS             complement(<1..>390)
                     /locus_tag="PXD41_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6290138.1"
                     /translation="NKGLIYSLNKAINLSSGEYIARMDADDISLPTRLSEQILYLEEN
                     HLDLCGCNALLFSEHGNLGLTNKLNSHEALEKLMVAGDIGIIHPTFLARRKVFVESGG
                     YNPLALHAEDMEFIAHILSMGFRLGNNP"
BASE COUNT          137 a           79 c           50 g          124 t
ORIGIN      
        1 aggattattc cctaatctaa atcccattga taaaatatgg gcaataaatt ccatatcttc
       61 cgcatgtaaa gctaagggat tataccctcc agattcaaca aatacttttc tccttgctaa
      121 aaaagtaggg tgaattattc caatatcacc agccaccata agcttttcta aagcctcatg
      181 actattcaac ttatttgtaa gaccaaggtt gccatgttca gaaaaaagca aagcattaca
      241 accgcataag tctaaatggt tttcttctaa atataaaatt tgctctgaca atctagtagg
      301 taaagatata tcatcagcat ccattctcgc tatatattca ccagaggata agtttatagc
      361 tttatttaat gaatatatca accccttatt
//
LOCUS       DANLXB010000374          363 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.376, whole genome shotgun sequence.
ACCESSION   DANLXB010000374 DANLXB010000000
VERSION     DANLXB010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.376"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>363)
                     /locus_tag="PXD41_002677"
     CDS             complement(<1..>363)
                     /locus_tag="PXD41_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha2 family transposase"
                     /protein_id="HDL6290139.1"
                     /translation="QHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSP
                     HLEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYTVVVPNTQSATLL
                     PIIREKVKPDSLVYADFYR"
BASE COUNT           99 a           89 c           77 g           98 t
ORIGIN      
        1 tcgataaaaa tcggcgtaaa caaggctgtc tggcttcact ttctcccgaa taatcggcaa
       61 aagtgtggca gattgcgtat ttggtacgac aacggtataa accttgtcat cacgttttaa
      121 cagcccaaat acggcagttt tgcctgcggc accacaccct cgtttacctt tgcgagcacc
      181 accgaaataa ctttcgtccg cttcaatttc accctcaaac atttccagat gagggctatg
      241 ttgatagatg agcaatcgca aacggtgaaa gtaataggca gcggtggttt tgtttacatt
      301 caccaactca gccgctgttc gagcagtgac acctgctaca aacagttcaa tgagtttatg
      361 ttg
//
LOCUS       DANLXB010000375          361 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.377, whole genome shotgun sequence.
ACCESSION   DANLXB010000375 DANLXB010000000
VERSION     DANLXB010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.377"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            50..355
                     /locus_tag="PXD41_002678"
     CDS             50..355
                     /locus_tag="PXD41_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290140.1"
                     /translation="MSKLNKLLSRKTSRKIIPEQVNFDINLPIYIPLFLSDKTAKIQA
                     VWELEQENGERDAGAVKRNRIQFRYLPEGVHKLTLIVGTPLLSKGSKVYQCLIKVNK"
BASE COUNT          132 a           49 c           64 g          116 t
ORIGIN      
        1 ctttacagta atgaatgagt ttattttaca ttttacaaag gaacattcta tgtctaagtt
       61 aaacaaatta ttatcgagaa aaacatcgcg taaaattatt cctgagcaag ttaattttga
      121 cattaacttg cctatctata tcccgctgtt tttatcagat aagacagcga aaattcaagc
      181 agtatgggag ttagaacaag aaaatggtga gcgtgatgct ggcgctgtaa agcgaaatcg
      241 tattcagttt agatacttgc cagaaggggt acataaatta acattaattg ttggtacgcc
      301 tttattatca aaaggaagta aggtttatca atgcctaatt aaagttaata aataatatta
      361 a
//
LOCUS       DANLXB010000376          361 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.378, whole genome shotgun sequence.
ACCESSION   DANLXB010000376 DANLXB010000000
VERSION     DANLXB010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.378"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
BASE COUNT          123 a           72 c           64 g          102 t
ORIGIN      
        1 tattgtaatc tcgcaattca acatcactaa taaaaaattc tccaacatat tcagagagtt
       61 ttttctactg ataccaacta aattttggtt caatactcga agttaaattt ggttcagaga
      121 aaaaagcctc taaatggcaa aagggtaagg ggccctaacg ggcaagggta atcccctaag
      181 ggggataaga gtaacctttc caaggggaaa ggtcttaccc aaaagggcaa agggctaaac
      241 ggctttcttt caacgcaaac atcatctttt tcggtctatt tcaatgcact caattctcaa
      301 aaaaattctt ggcaaaagta aatcctcgtc tcaaagttcg gttaaatctg acaatgtttt
      361 c
//
LOCUS       DANLXB010000377          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.379, whole genome shotgun sequence.
ACCESSION   DANLXB010000377 DANLXB010000000
VERSION     DANLXB010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.379"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>338
                     /locus_tag="PXD41_002679"
     CDS             <1..>338
                     /locus_tag="PXD41_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6290141.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANLXB010000378          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.380, whole genome shotgun sequence.
ACCESSION   DANLXB010000378 DANLXB010000000
VERSION     DANLXB010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.380"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>338
                     /locus_tag="PXD41_002680"
     CDS             <1..>338
                     /locus_tag="PXD41_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290142.1"
                     /translation="LVLTGQAGSGKSHLLGDFVQKRQNSGKYSLLLLGQDFTEKSNAW
                     NQILSKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLWNNQLNGLIEL
                     VSQYPNIGLV"
BASE COUNT          116 a           47 c           68 g          107 t
ORIGIN      
        1 gcttgtttta actggtcaag ctggtagtgg aaaatctcat ttattgggtg attttgtcca
       61 aaaaagacaa aattctggaa agtattcttt gttgttattg gggcaggatt ttacagaaaa
      121 atccaatgct tggaatcaaa tcttatccaa acaattaaat cttaatatca cacccgaagt
      181 atttttatcc gcattagata gtatcggaga aatgcaaaaa gaacgggtta ttttagccat
      241 agacgcctta aatgagggtg aagggaaatc attatggaat aaccaactta atggattaat
      301 tgagttggta agtcaatatc caaatattgg actggttc
//
LOCUS       DANLXB010000379          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.381, whole genome shotgun sequence.
ACCESSION   DANLXB010000379 DANLXB010000000
VERSION     DANLXB010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.381"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..>338)
                     /locus_tag="PXD41_002681"
     CDS             complement(<1..>338)
                     /locus_tag="PXD41_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6290143.1"
                     /translation="VWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIAN
                     QFDECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLSSLTRETATFT
                     LALPIETDNA"
BASE COUNT           91 a           75 c           83 g           89 t
ORIGIN      
        1 ttggcattat cggtttcaat cggcaacgca agcgtaaaag tagcagtctc tcgtgtgagg
       61 cttgaaagtt gctcaatcac aaaatggctg atgatttcct gattaggatc ggctttggca
      121 ttacctccag caaagtttac tgcatctaaa tattgggcgt aaacctgatg acggcgaaca
      181 atcgcaccga tacattcgtc aaactgatta gcaatacccg taactaagcc aaacagattt
      241 gatagcgtaa gagtagggcg attgcttggg ccgctgctgt tacgctcaaa tcctgttgcc
      301 tcgatggggt aagggtcgta agttcgacct tgccagac
//
LOCUS       DANLXB010000380          329 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.382, whole genome shotgun sequence.
ACCESSION   DANLXB010000380 DANLXB010000000
VERSION     DANLXB010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.382"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
BASE COUNT          123 a           43 c           62 g          101 t
ORIGIN      
        1 cttatataaa agaaggtgag gatgcggagt atcacaaaag atataaatgc aaaataagaa
       61 aaccatggta taaagttcca tcggtttatt caactaacat aggaatgctg aaaagaagtc
      121 atgaagcacc aaaactaata ttgaataaat tgggggctta tactaccgat actgcgtatc
      181 gtataaagtc aaataaattt caagatgaga ttcttgtgtg ctgtttccta aatccattaa
      241 ctatgatttt atctgagtta aatggaaggt tttatggtgg aggcgtatta gaattagttc
      301 cttctgaaat tagaaatcta tatattcca
//
LOCUS       DANLXB010000381          327 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.383, whole genome shotgun sequence.
ACCESSION   DANLXB010000381 DANLXB010000000
VERSION     DANLXB010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.383"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            35..110
                     /locus_tag="PXD41_002682"
     tRNA            35..110
                     /locus_tag="PXD41_002682"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:68..70,aa:Phe,seq:gaa)
     gene            116..191
                     /locus_tag="PXD41_002683"
     tRNA            116..191
                     /locus_tag="PXD41_002683"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:149..151,aa:Asn,seq:gtt)
BASE COUNT           86 a           73 c           76 g           92 t
ORIGIN      
        1 aaaaaatcag cataatgcac cacgcaacga cgttgcctcg atagctcagt cggtagagca
       61 ggggattgaa aatccccgtg tcggtggttc gattccgcct cgaggcacca tcaattcctc
      121 cttagttcag tcggtagaac ggtggactgt taatccatat gtcgcaggtt cgagtcccgc
      181 aggaggagcc atattctgaa gccctgatga gtaatcatca gggttttctt tttgagcttt
      241 ccggctaact actaagaaat tgctcaattt ttagtattat gcgttcaaaa acgctaaatt
      301 tttgagaatt gtatttgacg aagcccg
//
LOCUS       DANLXB010000382          319 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.384, whole genome shotgun sequence.
ACCESSION   DANLXB010000382 DANLXB010000000
VERSION     DANLXB010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.384"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(29..105)
                     /locus_tag="PXD41_002684"
     tRNA            complement(29..105)
                     /locus_tag="PXD41_002684"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(69..71),aa:Arg,seq:acg)
     gene            complement(119..213)
                     /locus_tag="PXD41_002685"
     tRNA            complement(119..213)
                     /locus_tag="PXD41_002685"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(176..178),aa:Ser,seq:gct)
BASE COUNT           92 a           71 c           71 g           85 t
ORIGIN      
        1 tttaatttga atagagtaaa aattaaaatg gcgcacccga gaggattcga acctctgacc
       61 gctcggttcg tagccgagta ctctatccag ctgagctacg ggtgcgtgat aaagtaaatg
      121 gcggtgagag agggattcga accctcgata gagcttttta accctatact cccttagcag
      181 gggagcgcct tcagcctgct cggccatctc accactcact gtgtctgtgg gcgccatatt
      241 actagaattt aaaaagatgt caaattcttt ttcctgaaaa ttgaaaaatc ccgagtgttt
      301 gcctattgaa taaacaaaa
//
LOCUS       DANLXB010000383          316 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.385, whole genome shotgun sequence.
ACCESSION   DANLXB010000383 DANLXB010000000
VERSION     DANLXB010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.385"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(<1..315)
                     /locus_tag="PXD41_002686"
     CDS             complement(<1..315)
                     /locus_tag="PXD41_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL6290144.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYH"
BASE COUNT          108 a           44 c           54 g          110 t
ORIGIN      
        1 atgatattct tttcctaaat cacaaaaatg tttattcaaa caatcacaaa taatttgttt
       61 gctagtattg attggcttaa ttaccgcaat catacaccac tgattattcc gctgagaaag
      121 ggttaaggta taattacgtt tggtataacg tgctttagtt tggatttgct gaataaaaga
      181 ttggatattt tcaatttcac tatgaagtgc aattcgatct tgcagtgtaa aaataaccgg
      241 cgagataaaa taaacagcga tcaccataat agtgatagtg gttagtattt caattaatgt
      301 gatggcttta tacata
//
LOCUS       DANLXB010000384          309 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.386, whole genome shotgun sequence.
ACCESSION   DANLXB010000384 DANLXB010000000
VERSION     DANLXB010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.386"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            11..>309
                     /locus_tag="PXD41_002687"
     CDS             11..>309
                     /locus_tag="PXD41_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HDL6290145.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEV"
BASE COUNT          107 a           45 c           70 g           87 t
ORIGIN      
        1 aggagaaaaa atgtacagta aaaacacgac taaatcggaa attgataagc tggatcaaaa
       61 aattttacgt tggctaatta aagatgctcg cacgccttat gcggaaatgg caaaagtttt
      121 tggtgtgagt gccgcaacta tccatgtccg tgttgaaaaa atgcgccaag ccggcattat
      181 tgaatctacc aaaatcgtag tggacgagcg taaggttggg tatgacgtgt gttgctttat
      241 tggcattatt ttaaaatcag ccaaagatta tgataaagta attgctaaac ttagtgaatt
      301 taatgaagt
//
LOCUS       DANLXB010000385          297 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.denovo.387, whole genome shotgun sequence.
ACCESSION   DANLXB010000385 DANLXB010000000
VERSION     DANLXB010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.denovo.387"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..>297
                     /locus_tag="PXD41_002688"
     CDS             <1..>297
                     /locus_tag="PXD41_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6290146.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANN"
BASE COUNT          101 a           34 c           71 g           91 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataat
//
LOCUS       DANLXB010000386        18933 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.guided.027, whole genome shotgun sequence.
ACCESSION   DANLXB010000386 DANLXB010000000
VERSION     DANLXB010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18933
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.guided.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            complement(244..1011)
                     /locus_tag="PXD41_002689"
     CDS             complement(244..1011)
                     /locus_tag="PXD41_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6290147.1"
                     /translation="MSKIIKIGKVANNSDAIDAISTQPRHSVIVGTIKRLQTDRIDLL
                     YQHRVDPNVPIEEVAGAIKDLMKQGKVLNWGLSEAGEKTIRKAHAIQPLTAVQSEYSL
                     FFRGREKDVILVCEELGIGFVPWSPLAMGALAGYVDENSRFEADPSKDLRGIIPRFTP
                     EAMQQNVKLIQLVQKWAKRKLCTPAQLSLAWLMAQKAFIAPIPGTSKARHLLDNLGAD
                     DVKFTEEELAQFRQELEAIEIVGLRLPEAILNFSEAK"
     gene            1010..1330
                     /locus_tag="PXD41_002690"
     CDS             1010..1330
                     /locus_tag="PXD41_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290148.1"
                     /translation="MELKVIHKNLVDSAKIKLHAVYLVIFLFVSHFAMIFGMADPISA
                     GYQPTTPAMTHSMQMDAKQITEMHNQMMTGEITPEEMMKMHQEMNPNMNMPNTQGGHS
                     EHHK"
     gene            1512..1967
                     /locus_tag="PXD41_002691"
     CDS             1512..1967
                     /locus_tag="PXD41_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDL6290149.1"
                     /translation="MKLHKFTRSLLLLSLGITAFAQAQTLSMEVWKSPTCGCCNEWIS
                     YMQKNGFEVKVNETGNYDAHKRFNIKYEHASCHTAVIDGYVIEGHVPAEDIKRLLAEK
                     PDAIGLSAPGMPIGSPGMDGEAYGGRKDPYDVVLIKKNGESEVFKSYNQ"
     gene            1980..3527
                     /locus_tag="PXD41_002692"
     CDS             1980..3527
                     /locus_tag="PXD41_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HDL6290150.1"
                     /translation="MKRRDFLRYGIGISLASSSLYSLANMMNHAQHGNMAMMHSVPTG
                     LMPTEAMPSGLSLNGILPKLANQSTQAGLFKATLKAEPIKIRLADNKETEFWAYNGQL
                     PGPQIEVFEGDTVEIEFINHLPQPSTVHWHGLDVPNEADGNPMDMVEPQGKKVYRFTL
                     PQGSAGTYWYHPHPHDHVSEQVYKGLAGTFVVKAKNDPLAHLPEQHWVISDLRLNADG
                     TIPANTMLDWINGREGEFVLINGQYQPQIQVKTNERIRLWNATSARYFRLNIPGVKWI
                     VVGTEGGLLEKPRSPVDELLLTPAERVEVIMVGETQGTVNLQSGYYDRRKMMVQEQPK
                     DLTLATIQVKSEPVQLPESLRSLPNWDEPKQVRQIRFSEKMMNHTNMPMMNHGTHHAT
                     TTLTDNPIPPMMNGMFLINGQTFDMNRIDFVTKLNEVEQWEIFNESHMDHPFHLHGTQ
                     FEVIQHTLNGKTFKPEGRALKDVVNLRPYEKVIIRFKQGHTGLKMYHCHILEHENLGM
                     MGMFKVE"
     gene            complement(3617..3772)
                     /locus_tag="PXD41_002693"
     CDS             complement(3617..3772)
                     /locus_tag="PXD41_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6290151.1"
                     /translation="MGLNRAEMMYREGAYVIDPVFPATLGYAGAGVVVAVGDDAGEFQ
                     IGDKVSV"
     gene            3861..4040
                     /locus_tag="PXD41_002694"
     CDS             3861..4040
                     /locus_tag="PXD41_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290152.1"
                     /translation="MFLVNQLLAITIATSAVLTNAQLAILAVAFWIAILPCARLATAV
                     GVWVFDDVVHNNSPN"
     gene            4089..4607
                     /locus_tag="PXD41_002695"
     CDS             4089..4607
                     /locus_tag="PXD41_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290153.1"
                     /translation="MPFKTVTFAQATTNDGQSLLAVNDLFIGPKSHTSAQYILQWNGA
                     EEVQSSSGIIVSTGLGSTGWFQSILAGAMAITGEASHPLLQGFSWSDRKLQFSVREPF
                     PSRTTGVALTFGTIEPDSPLQLGSLMPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQ
                     GQLISQKGRQRI"
     gene            complement(4610..5233)
                     /gene="tetR(H)"
                     /locus_tag="PXD41_002696"
     CDS             complement(4610..5233)
                     /gene="tetR(H)"
                     /locus_tag="PXD41_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(H)"
                     /protein_id="HDL6290154.1"
                     /translation="MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWH
                     VKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQALLMYRDGGKIHAG
                     TRPSESQFETSEQQLQFLCDAGFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEREK
                     VETDTVAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVLKSAK"
     gene            5325..6527
                     /gene="tet(H)"
                     /locus_tag="PXD41_002697"
     CDS             5325..6527
                     /gene="tet(H)"
                     /locus_tag="PXD41_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL6290155.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLHIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
     gene            complement(6623..7933)
                     /locus_tag="PXD41_002698"
     CDS             complement(6623..7933)
                     /locus_tag="PXD41_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL6290156.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(7933..8235)
                     /locus_tag="PXD41_002699"
     CDS             complement(7933..8235)
                     /locus_tag="PXD41_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290157.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            complement(8276..8464)
                     /locus_tag="PXD41_002700"
     CDS             complement(8276..8464)
                     /locus_tag="PXD41_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290158.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
     gene            complement(8771..9223)
                     /gene="ssb"
                     /locus_tag="PXD41_002701"
     CDS             complement(8771..9223)
                     /gene="ssb"
                     /locus_tag="PXD41_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6290159.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEGKLRTRKWQDQNGQERYTTEIQG
                     ELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF"
     gene            complement(9579..10064)
                     /locus_tag="PXD41_002702"
     CDS             complement(9579..10064)
                     /locus_tag="PXD41_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL6290160.1"
                     /translation="MNLISDEIYRQLVKDSGLNTSLKQLFSHFDTGSDYELLQEQFTQ
                     ARAYFMAAQDSMVQSVRQDLSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDKSVPVEVRKKVVAVEKDRILINMQISVFNHILRQLADCAEKLKEVDNAVAKSDLN
                     S"
     gene            complement(10073..10831)
                     /locus_tag="PXD41_002703"
     CDS             complement(10073..10831)
                     /locus_tag="PXD41_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL6290161.1"
                     /translation="MTTQLDPQLGPLRSEITFTLHTQYAHKLWVGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKSSGITRRDYQEKNARYQAAIKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNTTVEEEQSVETHITAQTNESQK"
     gene            complement(11010..12200)
                     /locus_tag="PXD41_002704"
     CDS             complement(11010..12200)
                     /locus_tag="PXD41_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6290162.1"
                     /translation="MFSSTNKPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLITD
                     KTKWHYVSHLDCLQSRYQIYQQQQLVKDKQPSQTEQELSKIQQNILTSTMEVRDFDEE
                     VRKKSSKNQTSNKGVRAKNEDKSLILDLLPLGKSDVQYRTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEVQQRIIQKQDVKKPKGYLYTLIQRAKQG
                     EFKPYYFELGKNLPSQNQANNNSAHSIQKLTEQPTEKPVLTSADREQMASRMQKFRAE
                     LLLQ"
     gene            complement(12359..12916)
                     /locus_tag="PXD41_002705"
     CDS             complement(12359..12916)
                     /locus_tag="PXD41_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL6290163.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMEILDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            complement(12909..14555)
                     /locus_tag="PXD41_002706"
     CDS             complement(12909..14555)
                     /locus_tag="PXD41_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6290164.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLGKSLSSRELSSELENDGYIISHALILKMERCVNYLYPHIPEVLF
                     SGLGHTQIDKLLAIRNNAEEVWAAHQFDTDVTFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALEGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQT
                     AKSEPLIKNENKAVTPQKAQHIIDEVIDDNESDDEQNNAITDLSQLGSSLLDNQDNQE
                     DYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEAY
                     SLALDIAESMGIDHLVEHIVKQPVDYTYAMKPADTELSPSALTLYSFLSMLQTAEHKD
                     ENSCVLDSKFLFELDDLTLVKIFRLIRVSRHIRQQGGEND"
     gene            complement(14564..15925)
                     /gene="dnaB"
                     /locus_tag="PXD41_002707"
     CDS             complement(14564..15925)
                     /gene="dnaB"
                     /locus_tag="PXD41_002707"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6290165.1"
                     /translation="MSSLNKSLVQPHSIEAEFSVIGGLLLDNELFDEVSSKINEGDFY
                     NFTHRLLFKHISELIEAGKPADILTLDQYLTQKKVIEDLGGFAYLAEIVKNTPSTANI
                     HAYTDIVLLYSKQRQLLKLGQFIVDQTQSAKTPDKFEAVVDDIEKKITEFSLSDNTKS
                     AADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLKKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADSLDDEE
                     WSKLTSAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSVEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEVYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            complement(15937..16761)
                     /locus_tag="PXD41_002708"
     CDS             complement(15937..16761)
                     /locus_tag="PXD41_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL6290166.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTTIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETISQLCALLMPQFANSHFSA"
     gene            complement(16859..16944)
                     /locus_tag="PXD41_002709"
     tRNA            complement(16859..16944)
                     /locus_tag="PXD41_002709"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16908..16910),aa:Leu,seq:caa)
     gene            complement(17256..18716)
                     /gene="xseA"
                     /locus_tag="PXD41_002710"
     CDS             complement(17256..18716)
                     /gene="xseA"
                     /locus_tag="PXD41_002710"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL6290167.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
BASE COUNT         5252 a         3960 c         3864 g         5857 t
ORIGIN      
        1 atatttgtcc ataaattcat tgagttgatt atgccatttt tacacttatt gactatagcg
       61 ttttgcctaa tcatctgtct gattccagtt ttaccctttt cccaatatct ttcaatttcg
      121 ataaatcttc cactaatctt gctacatatt caagaaaaag tgcgatcgtt tttcaaagga
      181 ttttatgaaa acgaccgctg taagaaagaa tttttattta cgactttttc aggtatctga
      241 aaactatttc gcttctgaaa aattcaaaat tgcttcaggc aaacgcaagc cgacaatttc
      301 aatggcttct aattcttggc ggaattgcgc caattcttct tcggtaaatt tcacatcgtc
      361 tgcgcctaaa ttatccaaca aatgacgggc tttgctcgtc ccaggaattg gcgcgataaa
      421 cgctttctgt gccattagcc aggccaaaga aagctgtgca ggcgtacaaa gtttgcgttt
      481 tgcccatttt tgcacaagct ggattaactt cacattttgt tgcatcgctt cgggtgtaaa
      541 gcgtgggata ataccacgca aatctttgct tggatcagcc tcaaaacggc tgttctcgtc
      601 cacataacca gccaatgctc ccattgccag cggcgaccaa ggcacaaacc caatccctaa
      661 ttcttcacaa acgagaatga catctttttc acgaccacgg aaaaacaacg agtattcgct
      721 ttgtacggcg gttaaaggct gaatagcgtg tgccttgcga atggttttct cgcctgcttc
      781 cgacaagccc caattcaaaa ctttgccttg tttcattaaa tctttaatag cgccagccac
      841 ctcttcaatc ggcacattgg gatcaacacg gtgttgatag agtaagtcaa tacggtcggt
      901 ttgtaagcgt tttatcgtac cgactattac tgaatggcgt ggttgggtag atatcgcatc
      961 aattgcatca ctattattag ctacctttcc tatttttatt attttactca tggaattaaa
     1021 agttattcat aaaaatctcg tggatagtgc aaaaattaaa ttacatgcgg tttatcttgt
     1081 gattttctta tttgtgagtc actttgctat gatctttggc atggcagatc ctatttcagc
     1141 aggctatcaa cccactacac cagcaatgac tcattcaatg caaatggatg ctaaacaaat
     1201 aacagaaatg cacaaccaaa tgatgacggg cgaaataacg cctgaagaaa tgatgaagat
     1261 gcatcaagaa atgaacccta atatgaatat gccgaatact caaggtggtc attcagaaca
     1321 tcataaataa taattctgat cacattttaa aaaataatag tggatggtac gttggcatat
     1381 ctctactaca agcagtagga ttttgagaaa aattttcaaa tgatagaatt ttttcagatt
     1441 acttgacctt aaccctaggt taagctttaa aatgatgtcc attcaatctc aataaaaaat
     1501 aaggacatct tatgaaatta cataaattca cccgctcatt gttgctttta agtttaggca
     1561 taaccgcttt tgctcaagca caaacacttt ctatggaagt gtggaaaagc ccgacttgtg
     1621 gctgttgtaa tgaatggatc agctatatgc agaaaaacgg ttttgaggtt aaagtcaacg
     1681 aaacaggcaa ttatgatgct cataagcgct ttaacattaa atatgaacat gcttcttgcc
     1741 acacagccgt gattgatggc tatgtgattg aaggacatgt acctgctgag gatatcaaac
     1801 gtttactcgc agaaaaaccc gatgcaatag gcttgtctgc accgggaatg ccaattggtt
     1861 caccaggtat ggacggtgaa gcatacggcg gacgcaaaga tccttatgat gttgttttga
     1921 ttaagaaaaa cggtgaaagt gaagtgttta aatcctataa ccaatagggg ggggaaagaa
     1981 tgaaacgtcg agatttttta cgttatggaa ttggaattag cttagccagt agctcgcttt
     2041 atagcctcgc gaatatgatg aaccacgcac aacatggcaa tatggcgatg atgcattcag
     2101 tacctactgg cctaatgcca actgaggcaa tgccttcagg tttatcgctt aatgggatat
     2161 taccaaaact tgctaatcaa tcgactcaag ctggactgtt caaagccact ttaaaagcag
     2221 agccaattaa aattcgcctc gcagacaata aagaaacgga attttgggct tataacggac
     2281 aactaccagg gccacaaatt gaagtatttg aaggagatac cgtagaaatt gaatttatca
     2341 atcacctacc acaaccctca acagtacatt ggcacggctt agatgtacca aatgaggcgg
     2401 atggtaaccc gatggatatg gttgaaccgc aagggaaaaa agtctatcgc tttacgctac
     2461 ctcaaggcag tgctgggaca tattggtacc accctcatcc acatgaccat gtttccgaac
     2521 aagtctataa aggcttagca ggcactttcg ttgttaaagc gaaaaatgat ccgcttgcac
     2581 accttcctga acaacattgg gtgatttccg atctgcgttt aaatgccgat ggcaccattc
     2641 cagcaaacac gatgttagat tggataaacg gtcgtgaggg tgaatttgtg ttaatcaacg
     2701 gtcaatatca gccccagatt caagtgaaaa cgaatgaacg aatccgtctt tggaatgcca
     2761 ctagcgctcg ttattttcgt ttaaacattc caggggtgaa atggattgtg gtgggtaccg
     2821 aaggtggttt acttgaaaaa cctcgctcgc ctgttgatga actgctactt acaccagccg
     2881 aacgcgttga agtgattatg gtgggtgaaa cgcaaggaac agtcaattta caaagcggtt
     2941 attatgatcg ccgtaagatg atggttcaag aacagcctaa agatctcact ttagccacaa
     3001 ttcaggtgaa atcagaacct gttcagttac ctgaaagctt aaggtccttg cctaactggg
     3061 atgagccaaa gcaggttcgc caaattcgct ttagtgaaaa aatgatgaac catacgaata
     3121 tgccaatgat gaatcacggt acacatcacg ctactacaac actaacggac aaccctattc
     3181 caccaatgat gaatggtatg ttcttaatca acggtcaaac ctttgatatg aaccgtattg
     3241 attttgttac caaattgaat gaagtggaac agtgggaaat cttcaatgaa agccatatgg
     3301 atcatccatt ccatttacac ggcactcaat ttgaagtaat tcaacatacg ttaaacggta
     3361 aaacctttaa gccagaaggc agagcgttaa aagatgtggt taatttacgc ccttatgaaa
     3421 aagtgattat tcgctttaag caaggacata ctgggttgaa aatgtaccat tgccatattt
     3481 tagaacatga aaatctcggt atgatgggga tgtttaaagt ggaatagtgg tatctaacta
     3541 taaaaataga gggatttcgt cataaaaaat ctgcacctta atcagttggt ttttagtcca
     3601 acttttgggg tgcagatcag acgctcactt tgtcgccgat ttgaaattcg ccagcgtcat
     3661 cgcccactgc cacgaccacg cctgcccctg cataacccaa agtcgcaggg aacacagggt
     3721 caatcacata cgccccttcc cgatacatca tctcggcacg gtttagtccc aatgcacggc
     3781 acggttttta aacattttca ttatagtttt ccttatcaaa atgggatttg gcaaacattg
     3841 ggcaaaccta agcccgccca atgtttttag ttaatcaatt acttgcaatc acaatcgcca
     3901 caagtgcagt tttgacaaat gcacagctcg ccattttggc agttgcattt tggattgcaa
     3961 ttttgccctg tgcaagattg gcaaccgcag tgggcgtttg ggtttttgat gatgtcgttc
     4021 ataacaattc tccaaattaa aggttgatta tcaaaacaaa aaccgttttt aaacccatta
     4081 ataaaaaaat gccatttaaa acggtcactt ttgcacaagc aacaaccaat gatggtcaat
     4141 ccttattagc ggttaatgac ttatttattg gccctaaaag ccacacttcc gcacagtata
     4201 ttttgcaatg gaatggcgct gaagaagtgc aatcttcatc aggcattatt gtatcaacag
     4261 gattgggatc aacggggtgg tttcaatcta ttcttgctgg tgcgatggca attacaggag
     4321 aagcttcgca ccctctatta caaggcttta gctggagtga tcgaaagcta caatttagtg
     4381 taagagagcc atttccaagt agaacaacag gtgttgcact gacttttggc actattgagc
     4441 ctgactcacc actgcaatta ggatctttga tgccagagaa tggcgtaatt ttctctgatg
     4501 gcatcgaaga tgactattta caatttaatg caggttgtat tgctcacatt ggtatcgctg
     4561 acatacaagg gcaactaatt agccaaaaag ggcgtcagcg aatttagatt tatttagcgc
     4621 tctttaatac tgtttcaagt ccagagatca tcacatcaag gacaaacaaa aatgcagcat
     4681 caccattatc actatccata attgcaacgg cttgggttaa taatggcgga taggcaacag
     4741 tatccgtctc tactttttca cgctcttttt ggctttcttg atgctcttga gtttccagta
     4801 cggagcctaa tgtaaaatgc gcaatagagc ttaatgcata cacggcttga gatagactaa
     4861 acccagcatc acacaaaaac tgtagttgct gttctgatgt ctcaaattga ctttcagagg
     4921 ggcgtgttcc cgcatgaatt ttgccaccat cacgatacat taataaggct tggcggaagc
     4981 ttttcgcgtt atttcgcaaa aagtcctgcc atgtttcatt cggcaatggc aaaacatgat
     5041 gatggtgctt ttgcaaaata gtttctgcta atgcatctaa caaagcgcgt ttatttttta
     5101 catgccaata caatgtgggt tgttccacac ctattttttg cgccagctta cgcgttgtta
     5161 atccttcaat accaacttca ttaagtaaaa tcaacgcatt atcaataact tgttctttat
     5221 ctagctttgc cattacctac ctcaaaataa aatagccttg acaatctatc actgatagag
     5281 atattttaca cccactctat cactgataaa tttttaggat ctcaatgaat aaatcaatta
     5341 ttattatact gctgatcacc gtattagatg ccattggtat cgggcttatc atgccagtac
     5401 tccctactct attaaatgaa tttgtcagtg aaaattcact ggcaacccat tacggtgtgc
     5461 tattagcgct ctatgctacc atgcaggtta tttttgctcc tattctagga cgactgtctg
     5521 ataaatacgg cagaaaaccc atcttgctgt tttccctttt aggcgcggca ctcgactatc
     5581 ttttaatggc attctcaacc acactttgga tgctctatat tgggcgcatc attgcgggga
     5641 tcacaggcgc aacaggtgcc gtatgtgcat cagcgatgag tgatgtgact cccgctaaaa
     5701 atcgaactcg ctattttggt ttcttaggtg gtgcttttgg tgttggcctt attatcggcc
     5761 caatgctagg gggattatta ggtgatatca gtgctcatat gccatttatt tttgccgcta
     5821 tttcacactc gatattatta atactctctt tgctcttttt ccgagaaaca caaaaaagag
     5881 aagcgcttgt tgccaatagg acacctgaaa accaaactgc ctcaaataca gtcactgttt
     5941 tttttaagaa aagcctctac ttttggttag caacctattt tattatccag cttatcgggc
     6001 aaattcctgc caccatctgg gtgctgttta cacaatatcg ttttgattgg aacacaactt
     6061 ctatcggtat gtctttggcg gttctgggtg tattacatat tttctttcag gcgattgtcg
     6121 ctgggaaatt ggcacaaaaa tggggcgaaa aaaccaccat tatgatcagt atgtctattg
     6181 atatgatggg ctgtttatta ttagcgtgga taggccacgt ttgggtcatc ttaccagcat
     6241 taatttgctt agcggcagga ggtatggggc aacccgcatt acaaggttat ttatcaaaat
     6301 ctgtcgatga taatgcgcaa gggaaattac aaggtactct ggtgagccta accaatatta
     6361 ccgggatcat tggtcccctt ttatttgcct ttatttatag ttatagcgtc gcttattggg
     6421 atggtctgtt atggctgatg ggggcaatac tttatgctat gttgcttatt accgcttatt
     6481 ttcaccaaag aaaaaccaca cctaaagctg ttatttcaac cccttaatac tagaaattat
     6541 aaagatcata aaagtcctgt ccgctcttaa taacgttgat aggactttat ttgggtatcc
     6601 ggattacagg gttgaaacag ggctataaac gccccgcctc aatctcccgc accagtgttg
     6661 atatgtcagc gccgtagtta gtggatggcc ccgcttcggc aacgccatag aacggcatcc
     6721 tgcccatagc gccctcgggt atccgttgac gctgatagcg tggcttcttg atcttctgga
     6781 agccctcagt aaacaggatc ttggctcgca gcgcttcaaa gctgtagcca cggccaacac
     6841 gattaacaac acgaatcagg ttgttcagtg actcggtgta ggcgttggta atggggtggt
     6901 cgaagtaagc gaaaatgtca tcgtgccagt tgcccatcgc tttgataagc gggtcatagt
     6961 gggctttcat ttccggcgta atctgtcgca gccaagagta atatgcctcc tgtgcctggt
     7021 gccgggtctg acagtcccaa atctcgaaaa aggcttcttt cagttcgtag gcttggccaa
     7081 tctcagggta attcaatgtc cagcctgaaa aacgcatgta ttcggcatct gtcagctcgt
     7141 gacggcgttt cagtaggaca aacctatctc gcatcaaccc acggcgctgc tgtggcgtca
     7201 gggcgcttct gatggctttt ctggcgcgtt ccagtgattc gttcgccatc ctgacaacgt
     7261 ggaacttgtc gatgatcacc gtggcgtcag gaatcatggt ttctactgct tgccggtacg
     7321 gcctccacat atccattgcc acgtagcgca ccaggtcgcg gtcagtgcgt ttgctcaggt
     7381 agcgggtgac ggtggtttta ttgcggttat ccagcatgtc cacaatggtc tgctgctgaa
     7441 tgttggtgat cacgcagcgg ggtttgatga tgtggatttc gtcgataccc aaccactgcg
     7501 gcatttcaaa attgagcgtc ttttcgaggc gttcacaata gtcgttgaaa atgttacgga
     7561 cggtcttttc atcgacgccc acatcctcgg caacactgga gaacgtgcgg cgcaggctct
     7621 cgcgctcgat gtactggatc aggcggttgg tcatctgccg cttttcgtct ttgtgcggta
     7681 caggctccag aaacgtcttt cggcaagact ggcagcgata gcgacggcgg ttaagcatga
     7741 tgccggtacg ccttccgtgg acgggtgtat ccatgatcac ctcatcacgg cgaccaaagc
     7801 cgacgatttc aggatgattg cagtgggggc actgcgtagg cggttcggaa acttcggcgt
     7861 gtacctggta atcgtgctcc agttcggata cctggagcac tttgtaatca ggccagttga
     7921 ggatattcga cattactcct ttgccacctt aaccgattcc tcggtgccag tggcagcagt
     7981 gactagcgcg ttatgaactc gacgactggt atcttcactg tctgtttcaa tccacgcgcc
     8041 aaaggcatgc accattgcag caaaagactt cccatcaagg atttcaccag acttgcctct
     8101 gagcaaagcg cccataccat agctgcttga cggatgatcg gcagtccacc tgagagtctc
     8161 gggagacatt tggcgaagcc ccattcgctt tatcgtggcg atagactcgt ccggaaaata
     8221 gagtttgatt ttcatgctga cctcgctgaa agccgcccct agggcggcat gttagtcaaa
     8281 ttgcttcgcc gcggcggatg ttgcgaatac gaaaacggag gtgctttgtc gcttggtgaa
     8341 ccccttggcc gcgtaattct gattctttat tcgggttgtt gttgattagg tcttcagcaa
     8401 ccctttcaag ctcgctaagc gcctcttcga tttcattcag cgcatcattt gcatcgtatg
     8461 acatggcttc tatcctgcac caagttcggc ggtgcgcccg ttgggcttat gcccgagccg
     8521 ttgttctcag ctcttgaatc taatattagg gcatctggcc ttttccgtca accctaaaat
     8581 ccggtttatt tacaaaatta cgtctagcgc agatcaaccg ctaaatccgg atacccaaaa
     8641 tatcatatat aaatactatc aaattaaaga tgttgtgtcg aaattaatgt aaaaaaagag
     8701 aaccctttta aaataaaggg ttctctatat ttatatgggt tttattttac agttttaaat
     8761 tatatgtaac tcagaacgga atatcatcat caaagttatc cattggtaaa tcttgtggat
     8821 gtgttgcttt tggagattgg ctcatagctt gatagttaga ttgttgtcca tctacgctat
     8881 ttgtagcatt acggctatct aacatttgta atagttcacc ttggatttcg gttgtataac
     8941 gctcttgccc gttttggtct tgccacttac gtgtccgtaa ttttccttcg atataaattt
     9001 tagagccttt acgtaggtac tgaccacaaa tttcagcata acggcgataa aaaacgatac
     9061 gatgccattc agtgacttct cgacgttctc cggtattttt atccgtccaa ctttcagaag
     9121 ttgccacact aatattagca actgcttcac cattaggcat agtccgcatt tcaggatcgt
     9181 tgccaagatt accgacaata atcactttat tgattcctgc catcgtattt actccttcaa
     9241 taaattaagt tagttctatt aaacttgatt cagcctaaga aaaaagtatt taattaaaat
     9301 ttggttagag tgaatttttc atttttacgt gtgcaatcac ttattcctcc gttgtaaagg
     9361 ctttttcttc gtgaaggtaa ggggcttgta cccttacctt taaaaggcct tttaatgcag
     9421 gatttacaaa ctgcactttt tcagggatta caaaccggat tttcaggtat tacaaacttg
     9481 aatatgtcct aattaacgga ctgtttgttt taccacgtca gcccaccgtg gttggcgttt
     9541 acacacaacc aatataggag ttgttatata taaatttact acgaatttaa gtctgatttc
     9601 gcaacggcat tatctacctc tttcaacttt tcagcacaat ctgccaactg tcgcaaaata
     9661 tgattaaaca ccgaaatctg catattaatc aaaatcctgt ctttttctac tgcgacaact
     9721 tttttcctca cctccactgg gacagactta tcatctacaa tcggctgcca aactgtgcca
     9781 ccggttctgg cattttgcat actacgccag cgtaaaaatg taccgcctga ggatgaggcc
     9841 ttatccttaa tcatataaac agccaaaggt gaaagatcct gccgcacaga ctgcaccata
     9901 ctatcctgtg cagccataaa ataagcccga gcttgagtga actgttcttg caaaagttca
     9961 tagtctgagc cagtgtcaaa atggctaaat agctgtttca gagaagtatt cagcccagaa
    10021 tctttgacta attgccgata aatttcatca gagatgaggt tcatatcact ccttattttt
    10081 gagattcatt tgtctgtgcc gtgatatggg tttctacgga ttgctcttct tcaacagtag
    10141 tgttttgctt gatgaaggga gcaaactcag cacgatgctc accggtaagt acagcatctg
    10201 agagtgtata gcccattcgt tttatcgcag cttgatagcg agcattcttt tcttgatagt
    10261 cccgacgagt gattcctgaa ctcttataac gctcaacgat cccaaaacat ttccggatta
    10321 accttgcacc agcttcaatc caatcttgag cttctgcacg attgataatc gcaatatgag
    10381 ctgccgtcat tactgaacgg caaaggctat caaaatcacc aagtaagtag agtaattgat
    10441 accctagctg tgaattaaca taaatcgggt aagaaatcgg ggaaatattg gcacagcgtt
    10501 caatagaaat tccctccggc aacattttgg cgtagagcgt gacaatgtcg ttggtgagct
    10561 tttggatttc cttccgataa ttgatcacac tttcttcaaa ttgaatcaga taatcgtcag
    10621 cataaggatc atcttctgat gcagcccgtt gaatttgggt tagcattgca aagcaatttg
    10681 gtacgctgat aatggaggat tgagttactt tgccttcctc attacgaatc attggtcgcc
    10741 ccacccataa tttatgggca tattgggtat gtaacgtaaa agtgatctca ctacgaagtg
    10801 gaccaagttg aggatctaat tgagtggtca tatatgctcc ttgtttattt gattattttt
    10861 tagtctttgg aaaggggctt tccattgtct gttttttaat ctttgcagac actgcctacg
    10921 ctgtttattt tttatccatt gtgtacctgg tacacactga ttatttttca ctcactatta
    10981 agccccttaa cagtgattgt tttttaatct tattgtaaaa gtaattcagc tctaaacttc
    11041 tgcatacgac tagccatttg ctctctgtct gctgaagtta agaccggttt ctcagtaggc
    11101 tgctcagtca gtttttgtat agaatgagca gaattattgt tagcctgatt ctgtgaggga
    11161 agattttttc ctaattcaaa atagtagggt ttaaattcac cctgcttcgc ccgctggata
    11221 agcgtataga gataaccttt cggttttttc acatcctgct tttgaataat gcgttgttgt
    11281 acttccaaca aaatagcttg gcataaaccg aggtctaatc ccttcattgc ctgtgcagta
    11341 agtttttgtt caagtgaagt taatgggatt tcttgtggcc aagtaatttc gctcggttcc
    11401 ccagtacagt acttattaat atataaagta cggtactgta catctgactt ccctaatgga
    11461 agtaagtcta aaatcaatga cttatcttca tttttagccc taactccctt attggaagtc
    11521 tggtttttag aggatttttt cctgacttcc tcatcaaaat ccctaacttc catagtggaa
    11581 gttaggatgt tttgttgaat tttgcttaat tcttgttctg tttgcgatgg ctgtttatct
    11641 ttcaccagct gctgttgctg gtatatctga taacgacttt gtaaacagtc taaatgagag
    11701 acatagtgcc atttggtttt gtctgttatt agactttcaa caatatgatt tgccacacca
    11761 ttaataaggc tatctttatg tttggtgcat ttatctaaaa aagagagata gtcgctattt
    11821 aattgaattg catctaaaat tggcacaggt tcatcatgta ggatataaac attaccttgt
    11881 acataacctc gctcatcacg cactgtttca cataaagtaa gccagcgagt aagacggagt
    11941 aaatagagtg tttgagtcac gactttttcc gataatttag cctccgcata aggtctatcg
    12001 gataacattt tgctgagcgt ctcataagag ggaaataatc ctccttgaaa ggcttgaaca
    12061 ttgcacttaa tgagctgcca agcaaacttt gctcttggtg taaggcaggg atcttgtaat
    12121 aatcgagtag ggactgtttc gtgttggttg ccaaaaaata gcaatccatg ctctgttggc
    12181 ttattcgtgc tgctaaacat tgtttctctc caccaggata aaagagtttt tctcttgcta
    12241 ttctctctcc tatggctata atgcacggga cttctgcaaa gtccttgtaa ttcataagat
    12301 agagatacaa gactcaatat cgaatgcccc aaagctccaa cttcggggca tttatttttt
    12361 acttatgttt tgaataccat tcggaaacca gtttccaaac aaccgttaga ttcatattgc
    12421 cttcctcagc aatcagacat agaagctcta atccttcttg tgaatctagg atttccattc
    12481 gttgtttgta tctttgccaa atttcccaaa tatgggtaga ttcttcatca cttgctgccg
    12541 cttttcgtcc cattttttct tcgataccga gtaattgacg gcgagccgag acttcagagg
    12601 ttgataaacc aaaatactgg tgcaacattt caatagaggc tccgagcaat aatgctcggt
    12661 caataatttg tcgctgttga gtattggctt gtgcaatagc cagtaatttc caaaaggttt
    12721 cgtgattaat ctccacctta gcaaaagaga caacggagtt gctaatatcc ataatttcat
    12781 caatactgag attattgatc gcttttagtt gctcctcaga aaatcccatt tttagacaag
    12841 gatggatatt tccctcttta atattgagca gggcgttacc aatcaatgct tcatttacgg
    12901 taatcggctt aatcattttc tcctccttgt tggcgaatat ggcgactgac ccgaatgaga
    12961 cggaaaattt tgactaaggt aagatcatca agctcaaaca ggaatttgga atctaagaca
    13021 cagctatttt catctttatg ttcagcagtc tgtaacattg agaggaatga gtagagtgtt
    13081 aaagcagacg gtgaaagttc agtatctgcc ggtttcattg cataagtgta atccactggt
    13141 tgtttcacaa tatgttcaac cagatggtca atgcccatac tttcggcaat atctaaggcc
    13201 agtgagtagg cctctgagcg atattgacgt gcggggtgaa tcaaccaaat atcttcaacc
    13261 ggttggcgac cttcacaagc aaaagtcagt ccattcgctt cagctcgttg ctctcgctgt
    13321 tcttgaatac tcattcccgg agtgagtcca aagttatggg caatttggga tagataatct
    13381 tcttgattat cttggttatc gagcaatgaa gagccaagct gagataaatc agtaatagcg
    13441 ttattctgct catcatcact ttcgttatca tcaattacct catcaataat atgttgagct
    13501 ttttggggag taacggcttt attttcattt ttgatgagag gttcagattt tgcagtttgt
    13561 tgttcctgtc tggtattgat ttgatcgact gttttttcaa ctaaattatc aatttcttgt
    13621 tgtttagccg ctattttttt gaatttttgt tcatctaagt caatatccag ataaagtgtt
    13681 tcaaaactca ctttaccctc taaagcttca accattgccg taatcaattc actttggaat
    13741 tcttttgctt gaaatggtgt agcctcatta aatttggata aattttctga ccagagcgat
    13801 tcaaaagtaa catcagtatc aaattgatgg gctgcccata cctcttcagc attattacga
    13861 atagctaata gtttatcgat ctgtgtatga ccaagaccac taaaaagaac ttctggtata
    13921 tgtggatata agtaattaac acaacgttcc attttaagaa tgagagcatg agagataata
    13981 tatccatcat tttctaactc agaagataac tctctcgaag aaagagactt acctaatttt
    14041 ttctcgtaat actccttcgc ctgcaaaatc cccaatgctt tttcaataaa tgacaaatcc
    14101 gcacgggtat cattttcaat caaatgcccg ataagtaaat tgagttcagc ttcgacactg
    14161 tcggcagtat caccttgcca aggtttatat tgacaactga tggaccaaaa ttttggatct
    14221 ttggtctcgg taaagagctc cttgagtgcc tgaatacgag tattaccacc gtcagcgata
    14281 atatagaaat cttctcccgg acgacgggtg atattcggct tatgatctaa ccctcgacga
    14341 cgaatagact ctttgatcat ctcaaagtta gggttacggg ttttccgagg gttatgctca
    14401 tacggacgca acttatccag cgttactgta atatattcaa catcgctact gtaatgcgtt
    14461 ggtgtggctg tttggtagga tggagccgta tttgaaatag gtgaaacatt taatcctttt
    14521 gctatcgctg ccagtctttt ttcatctttt gtcataatct atcctaatgc gttgtgtttg
    14581 ttctgttttc aaatagggca aattcacttc tgaaattcgt cattacggaa gtaagtggtc
    14641 cgtttctttg cttgccgata atgatttcag cagtgccttt aaacggagaa tccgcatcat
    14701 aaacttcatc tcggtagatg aataaaatga catcggcatc ttgctcaagt gagccggatt
    14761 cccgtaaatc agagttgatc gggcgtttat tggcacgttg ttccacagac cggttcagct
    14821 gagagagggc ataaaccgga caatccatct cttttgccag taatttgagt gaacgagaga
    14881 tgttggcaat ttctaaattg cgattttcat aacgttgcga ggtttgcatt aactgaatgt
    14941 aatcaatgaa aatagctgcc ggtttgccat atttacgagc attttgtcga actttagtgc
    15001 gtaatttttg aggcgtgaga ctaccttcat catcaataac taaacgattt ttccaatgtt
    15061 ctaggatata gcccattgct gaggttagtt ttgaccattc ctcatcatcc aaactgtctg
    15121 cctgtctaat attttgcaat cccactctgg cacgcatagc tagaaaacgt tgtaaaatct
    15181 gatctgccgg catttccatg ctgtgataga acacaggagc cgactcgaat tttttaagtg
    15241 tatggtaagc gatagtttga gaaaatgcgg tttttcccat agaagggcgg gcaccaatca
    15301 cgattaaatc gcctggctgt ccacctgttg tcgcttcgtc aataccttga ataccagttg
    15361 gagtacctgt cacaggatct ccatttttag ccgagagttc catacgagag agcatattgg
    15421 caaaaatatc acttaaatct gctgcagatt ttgtattatc tgataggcta aactcagtaa
    15481 tttttttctc aatgtcatca acaacagctt caaacttatc tggcgttttc gcactctgtg
    15541 tctgatcaac aataaactgc cccagtttta aaagctgtcg ctgtttacta tataagagaa
    15601 cgatatccgt ataagcgtgg atattagctg tagatggagt gtttttgact atttctgcaa
    15661 gataagcaaa tccgcccaaa tcctcgatca cttttttctg ggtaaggtat tgatccaatg
    15721 tcaatatatc tgctggttta ccggcttcaa tcaattcgga aatatgctta aacagtagac
    15781 ggtgagtaaa attataaaaa tccccctcat tgattttgct actcacttca tcaaagagtt
    15841 cattatccaa gagtaatcca ccgattactg aaaattcagc ctctatagaa tgcggctgta
    15901 caagtgattt atttaagcta gacatacatt ctccctctat gctgagaagt gagagtttgc
    15961 aaactgtggc atcagtaacg cacaaagctg actgatcgtt tcatattcag cttggctctg
    16021 acgatagacc ggttttgaaa aagttgccgc ttcacgatat gccacgcggt caggtaccga
    16081 aaattccagc aatgttttgt tttcatcaaa ctcattttgg aagagagtat gaaggtagtc
    16141 ggaaaccaat ttgacatctt tagtgtgatc aacacagtta atcatcgctt tcagcggtgg
    16201 tagggtaaag ccaaatgccg taaaggtttc gaggtcttga tacattccaa tcgtgccacg
    16261 aataaactcc ttagcagata aaatgtgggg aagaatagga cagaataaaa catctgctgc
    16321 caatacagac atatcgacag taatatctct ggtaccacga gtgtcaataa tgatgacatc
    16381 gtaaccttca attttctgga gcagtaaact aaaacgtaat gcaccgtcag gtgaatctct
    16441 cagcattggg ctgattttat ttgacgggtc attagactgg atcaagtcaa gatttgggat
    16501 agtcgttcta gaaataatgt gggtaggatc tacatcttta aaatgcagaa attcgtaagt
    16561 tccaccggga gcttgatatt ccaactcata ataagagctt aatgtgggtt gggtatcggt
    16621 atcaataaga agggttctta gaccgtgttc tgcacagaat gcaccaatgt tagcagcatt
    16681 cgtactcttg gcagagccac ctttagttga agcaatagta atggtaaaag gtttgtttgt
    16741 accgttttgt aatggtttca taatttactc tcttaacaag ggttaaggag tattggccat
    16801 taatacggtg tatttgaatt gattatttga aagagagaaa ctacaagtgt gattcaaatg
    16861 gtgcctgagg tcggactcga accgacacgg ttattcacca acggattttg aatccgtcat
    16921 gtctaccaat ttcatcactc aggctaagag tgctttttat tcaatcgcct gtatgtccta
    16981 tcagtttacg cataagattt tgaatccgct gcgtctaccg atttcgccac actggcttaa
    17041 tttttgcacg attataggga aatatgaccg cttgtgcaag cgtaaaaatg ccttttgaaa
    17101 tcggttgatt taaaaatcag cactcaattc atctttacaa aaatagttat gcacatcacc
    17161 tgtggataac taagtgaaca accctgttta taaatattta acctactgat tttactataa
    17221 ataattttaa aaattggcag cgttcaaaat ttcccctaca aaaaatccac tacttgactt
    17281 attatttttc ctgtttttag ttgggtgata atagcctcac cacgttcaat attttctgtt
    17341 gaagtaagcg ttttaccgtc tttagtttgg gtaattgagt agcctctggt caagattttc
    17401 aatgggctaa gtccatcaag tttagtgcat aactcttgaa aatgtcgctg ctctttcagc
    17461 attatttttt cgatagaata agccaagcgt tgcgacattt ttgccaccat cgtttgttgc
    17521 tgataaagtt gataaggtag cgggttgcgt tcaaaccgtt gcgtaatgtt tttccatttt
    17581 tgctgttttt tgctgagttg ctgctccatt tgccaatgga gtttcagctc caattgctta
    17641 agcatttggg attggcgttc aatctgcttt tgcggatgtt ggtgaattaa acggacattt
    17701 agctctttcc ccacctgctt tttggctgca acaagtgcat aaattgcctg ctcgaggcgg
    17761 tattccatat aatcaaaacg ttgctgttgc gattgaattt gtttgcttgg atgctgagca
    17821 ttcaggcgta aggggagttg ttggaaacgg ttaaatttat ggttccaaac tcggtcaaag
    17881 gctaaattca ctttatcaaa ctgatgttgt aattggcgtt tcaattcatt ttgatctctg
    17941 ctgactaatt ccgcagcagc cgaaggcgtt ggtgcgcgca aatctgcaac aaaatcagca
    18001 atggtcacat cggtttcgtg tcccaccgca ctgataatcg ggatttgtga atgataaatg
    18061 gcataagcga cactctcttc gttgaaacac cataaatcct ctaatgaacc gccacctcgc
    18121 ccgacaatta atacatcaca ctcattgcgg cggtttgcca gttcaatcat attcacaata
    18181 tcttgcgttg cttctttgcc ttgcacgaga gccgggtaaa taaccactga taagctcgga
    18241 tctcgtcgtt gcaaaatatg taaaatatct tgtaatgcgg ctccgcttga ggaggtaata
    18301 ataccaacgg ttttaacaaa agtaggaatt ggctttttat gctcttgagc aaacaagcct
    18361 tgagctgaaa gttttgcttt aagttgctca aattgctgct gtaacaagcc ttcgcccgcc
    18421 ggttgcatac tctcaataat gagctgatag tcacctcgtg gctcatagag tgtaacactt
    18481 gcccgcacca gcacctgcat accgttttgt gggcgaaaat tcactcttac atttttcatt
    18541 ttaaacatcg cacaacgcac ttgtgctttg tcatctttta aagtgagata ccaatgcccc
    18601 gaaactggtt ggctgaaatt tgagatttcg ccggttagcc aaatatggct catttccatt
    18661 tcgagcaaat ggcggacgga atagttgagt tgggtaacag ttaaaatatt gctcataata
    18721 atcaaaaaag cgtaaatgta gtagaagtgt aacgagaaat gaaagcgaga ggaagctttt
    18781 gcagtcaaca agcggttatt ttttgctgtt ttttggcaaa taaaacgaaa accctcgatg
    18841 tgattcacta tcgagggttt ggaatgtggt tgcgggggcc ggatttgaac cagcgacctt
    18901 cgggttatga gcccgacgag ctaccaagct gct
//
LOCUS       DANLXB010000387         8895 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749860-rid16725263.guided.102, whole genome shotgun sequence.
ACCESSION   DANLXB010000387 DANLXB010000000
VERSION     DANLXB010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749860
            Sequence Read Archive: SRR17934111
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574595.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574595.1
            Genome Coverage       :: 107x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:02:16
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,664
            Genes (coding)                    :: 2,597
            CDSs (with protein)               :: 2,597
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 39 of 67
            Pseudo Genes (incomplete)         :: 19 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8895
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749860-rid16725263.guided.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: CO"
                     /collection_date="2020-01-06"
                     /collected_by="Colorado State University Veterinary
                     Diagnostic Laboratory, Fort Collins, CO"
     gene            <1..650
                     /locus_tag="PXD41_002711"
     CDS             <1..650
                     /locus_tag="PXD41_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6290168.1"
                     /translation="KAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKET
                     IEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEG
                     TATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQIS
                     STVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            846..2255
                     /locus_tag="PXD41_002712"
     CDS             846..2255
                     /locus_tag="PXD41_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6290169.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            2401..2874
                     /gene="gpt"
                     /locus_tag="PXD41_002713"
     CDS             2401..2874
                     /gene="gpt"
                     /locus_tag="PXD41_002713"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6290170.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            2987..3610
                     /gene="gmk"
                     /locus_tag="PXD41_002714"
     CDS             2987..3610
                     /gene="gmk"
                     /locus_tag="PXD41_002714"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6290171.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            3700..5097
                     /locus_tag="PXD41_002715"
     CDS             3700..5097
                     /locus_tag="PXD41_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL6290172.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(5210..6055)
                     /locus_tag="PXD41_002716"
     CDS             complement(5210..6055)
                     /locus_tag="PXD41_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6290173.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6196..>8895)
                     /gene="ttrA"
                     /locus_tag="PXD41_002717"
     CDS             complement(6196..>8895)
                     /gene="ttrA"
                     /locus_tag="PXD41_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL6290174.1"
                     /translation="GIENRSTACARGAAFLEGVNSPYRITQPLKRVGKRGEGKWQTIS
                     FEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGMKANQLLVTFAGPEGRQ
                     PILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQHAKPDWDHAEFILFIG
                     TSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLATQNNHWVPIKPEGDLA
                     LVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHLIICEPNHPKFGQALRI
                     SDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFVEQIAKLLDGSEVLVKS
                     SMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKANAITHGGTMHSTGFYT
                     SWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFPNEVKPKGTNLARSKKA
                     YQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQGYPYFAKAWINHMANPV
                     YGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVPDTHNFESWGFSTAWGG
                     VPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLPGFGENAIADLEGNRYP
                     LHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPKIEQTLKAEERLKVANV
                     YCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSNGEHYWGCPRYMSPRFA
                     DGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPEGLVAMNRLDAEEKGIK
                     HGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGASSYTIDGVEIPANPMI
                     AKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKLA"
BASE COUNT         2404 a         1946 c         2054 g         2491 t
ORIGIN      
        1 aaaaagcggc gaaagagaaa gcggaagcgg agcgtttagc agcagaaaaa gaagtagatc
       61 ctatagctat tattaaagca aaaggtattg atgatacaaa ttacggctta aaacttggta
      121 atagtaaaga aactattgag ggtaaagtca cagtcagaac acagagttat ttatataatc
      181 agccatattc tgtagtaaca gcacaagcag ttcaaagaaa tggctgggaa aacggtaatt
      241 atattgataa agttgatgga acagttacag ttaaaggatt gaaaacagag aaattaccaa
      301 cagagggtac tgcaacatat tcaggaaaag catttaacca cgatggagct aaaggtttta
      361 atggtggtga tctaacctat aatgttaatt tctctaagcg taccggttca ggtagagttg
      421 agggagaatt tggaaactta atcgtattag aagaggggac gattaataat actcagattt
      481 cttcaacagt acatggcaat aatcctttaa acctttctgg aaaatataca gtcgaatttt
      541 tcggtaaaaa tgcagaggaa attgccggtg aaattcagac aaaagcaaat cttactgggg
      601 aagtgagtaa ttttggactt gccggcactc gtggcgatat ccaaaaataa ccttttctaa
      661 cgttcaatgc cgtttaacga aaaattaaac ggcatttgtc ttgatattgc ttgtagatac
      721 cataagacac aatagtttag atttcaattt acagcttcta ataaccctct cccacaaggg
      781 gagagagtga taaatcccgt agaggcgaac atataggtcc gcccctacca attttcttta
      841 tctttatgaa aaaatatccc cttttatttt cgctgttcag ccccgttgta tgggcagaaa
      901 aggtgattga acacaacact gacccgattt cctttgagcg tcagccgcaa gcggttaaat
      961 ttgagcaaaa tgttgtaaaa aattcacaaa aaccgaccgc ttatcagcct gcgtattcag
     1021 tcaatcagaa tgttgaacag caaattaacc aagcgattct cagccaagat tgggcaacgc
     1081 ttgaaccgct tttaagccgt tatccgcaaa ctgaaaattt tgacccgttg ttgtggcact
     1141 atgcgcaagc cgcacttgcc tatgcgaaaa aagatcatca aaccgcagtt tttcactatc
     1201 gccaactgtt agctaagccc ccgagtttgg tttaccctcg ttttgatttg gcgttgattt
     1261 tggcagaaga tcagcaattt cgtgcggcag agcaggaatt taaggctatt caagcccatt
     1321 taccgccgga acttgctaaa attgcccgca atactcaagt ccaaattgct gaaaatgagg
     1381 cgtggcagcc cgatttttat ctgcaatata cccaaacaga taacgtgaat aatgcctcat
     1441 cttcgccgat tgtgaatgta aatgggcgga ttttccgcaa aaatgcagac agtttgccac
     1501 aatcagcaaa aggcgtgcgt tatggcttag ggttgagtaa attgcacaac gtgaaaggca
     1561 atcattttgt cggtttaacg ctcaattata gcgggattta ctattgggat aaccgagatt
     1621 accgtgagca atccgtatcc gtttcgccga attatagcta ccgcaccgtc gcttatcggc
     1681 tgactttttc gccttttatt gagcaaaatt ggctggggag tagccgttat aatgttcaat
     1741 ttggggcaac actcaacggt ttgcgttacc ttaattcgca atggttggtg tcggggagtt
     1801 ttacccattt gcaaaaacgg tattttgagg agctaaccgc aagccgttat aacagctatc
     1861 agcaccaact cagtggcggt gtgcagtggc aagcggtcaa aaatgggcgg ttttttgcaa
     1921 atttagacgg cgtgcgtgaa attgcacggg aaaaagcaca aagctcgaat aagtggctgg
     1981 ctcgagtggg ggcggttttt caaggcgaac gctgggcaac gcaggcaagt atcggctttg
     2041 gcaagcgata ttttgccgac aagcactatt tgtttggcta taagcggtta gacacggaat
     2101 atcaagccaa tttagcggtt tggaaccgca cttggcattg gcagggcatt gtgccgaagc
     2161 tgaatttccg ttatcaaaaa attgacagca atattgctga tttttactct cgccaaaaca
     2221 aggaagtctt tttcacttta gaaaagctat tttagtgttg gttttttgtg ctaagcatac
     2281 gattgcgtag ctgccggcac aaaaaaataa atgaaatgat ggcgaaaaaa gcattttcgg
     2341 gttatcctag tgcaattttt tatatcgggg tagcccccaa ttttatatta ggttgtttct
     2401 atgagtgaaa aatacacaaa tgaaaaatat gtcgtgacgt gggatatgtt ccatatgcac
     2461 gctcgcaagt tggcagaaaa tttattacct gccacacagt ggaaagggat tattgcggtg
     2521 agccgtggcg gcttgtttcc ggcagccgtt ttagcacgtg agttgggtat tcgccacgta
     2581 gaaacagtgt gcattgccag ctacgatcac gatagccaag gtgagttaaa tgtgttacac
     2641 gcagccgata ccgatggcga aggctttatt gtggtagatg atttagtgga taccggcaac
     2701 acggcaaaag aaattcgcag aatgtacccg aaagctcgtt ttgtaaccgt gtttgcgaaa
     2761 ccgcacggtg caccgttggt tgatgattat gtgattgata ttccacaaga aacgtggatt
     2821 gagcagcctt gggatttagg cattaccttc gttcagcctt tggcacgtag ataattttgt
     2881 gtaatggaca atgaaagttg tccattattt tttatttatt cctatgaaat gtaggggcga
     2941 atcatcattc gccctattcc caaaatcaaa taggtatata caaataatga gtttaggcaa
     3001 tctttatatt atttctgccc caagtggagc aggaaaatct tccttaatta acgccttgtt
     3061 ggcggattta ccccgttcgg aagtacagct ttcgatttca cacactaccc gtcagcctcg
     3121 tccggcagaa caggacggcg tgcattatta tttcacttcg cacgatgagt ttaagcagct
     3181 gattgagcaa gggtattttt tagaatgggc ggaggtgttt ggcaattatt acggcacatc
     3241 attgccgatg attgaacgta gcctagagca gggcattgat gtctttttgg atattgactg
     3301 gcaaggggct agacaaattc gggaaaaagt gccgaatgtg aaaaccgttt ttattttgcc
     3361 accgtcaaaa acagaattgg aaaaacgttt aatcgggcgt gggcaagatt ccgctgaaac
     3421 cattgccaaa cgtatggcag aggcggtgtc ggaaatgaac cattacaatg agttcgatta
     3481 tgtgattatt aatgatgatt tccaacaggc attggcagag ctaaaagcga ttttaattgc
     3541 cgagcgtttg agcttaggtt cgcaacaaat tcgtcatcag catttgatta ctgatttgtt
     3601 aaataattaa atgaacagtt gttcatttaa ctggaaaggc aatctgtttt tgggtagaat
     3661 acgcccattt tcccctcttt attttcaaaa ggaaatgtaa tgaaactttc aaaattagca
     3721 ttttctgtgg cgttggctct aaccgtaacg gcttgtacca cagggaatat gagcaatgac
     3781 gggactttgc aacaagcaca gcaaacctat caaagctatg atgaaattac caaacaatat
     3841 caaattaacg agcaatggtg gcaaggctat acggatgcgg aattaaaccg tgtggttgat
     3901 ttagccatca aaaataacct tgatttagcc aaaagcggaa ttgcagtcaa taaagccttg
     3961 tataacgcta atttagtagg ggcaaattta gtgccaacct ttagtggttc aggttctgtt
     4021 tctgcggcta aaggtttagg ttcggcttct tcaaataatg tttcgaccgg tgtttcaaca
     4081 accgcagctc aagctgcatt taatttaagt tatactgtgg atttatggcg acgtttagcc
     4141 gataccgcca gtgcggcaga atggacgcat aaagccacca ttgaagactt aaaagctacc
     4201 cgtttatcta ttattaatgc ggttgtgact acttactacc agttagctta ctatcgtgat
     4261 gcgattcgta ttaccgaaga gagcattcgc cattatgagc aaatcagccg tattttaact
     4321 aacaaaatga atgccggtgc gattgatagt ttagcggttg atcaggctca acaagcggtc
     4381 ttaaacgcca gaaatagtgt aattgatctg aaaaccaacc aaaaaattgc cgagcaaaca
     4441 ttacgcaatt tgttaaatgt tcagccaaat actccgctta acattcgtta cccgaatatt
     4501 atgagcgtga aattgcaagg ggtagattta aatgtgccag tgtcagccat tgctaatcgc
     4561 cctgatgtag taggctcgtt acaacgctta caaagtgcat ttaaaacctt aaccgcaacc
     4621 gagaaaagct ggttcccaac cttaaccatc ggtggttcta ttaccggtag tgcaaccaat
     4681 atcggcaatg tggcagataa ccctgtgggt aacggcttaa ttaaattgga tttaccgttc
     4741 ttagattgga atcgggttaa aaataacgta aaaatttctg aaacggatta tgtgactgcc
     4801 cgtttaaact atgagcaaaa aattacctca gccttaaatg aaattgaccg ttattattac
     4861 agttatacgc agtcgagaag ctcgttaaaa atccttcaag ataccaatgc gaaaaataaa
     4921 cgtatcagtt catactataa aaaccgttat gaacaagggg tgtcggagtt ccgtgagtgg
     4981 attaccgcac tgaataccga gcttaattct cagttggcga ttttaaatgc aaaatatgcg
     5041 attttgacca acgagaatgc ggtttaccaa gcaatggcag gtaaatacag aagataatta
     5101 tatctaaaac tatatactat ggttggtaaa agtgggttaa ggcttgatgg cttaacccgc
     5161 ttcgctattt attgctactt aaaccatttt ggtaatgtta gtttagctac tagaacttaa
     5221 tcacatcacc gtttttcggc acagttacac gatttaatcc ctctttttgt acataatcac
     5281 gcatctgatc actgctgatt gaggtttgtg gcagggcgtc catatgcaca gttaagattt
     5341 tcgcttgtgg agcgattttg tgtgctttgg aaacatcttc ggtacacata atcgggctgc
     5401 cttcaaagtt tggtagtttg gcacagccgg cattcagcac cacaaagtct ggtttgtaag
     5461 tgttgaacga atgttcgatt tcgtggttcc aaatggtatc tcccaccaaa tagacggtcg
     5521 gtttgccttc cgctttcatc actacgtcca tcgcatcgcc gaccatttcg gcaattttcg
     5581 ggttcgcata catcgcatcg gtgccgtgct ggccacgagt tcgggttaag gttacgcctt
     5641 caaacggggt atctttgccg accacacgca catcggtaaa gccttgtgaa cggattaaac
     5701 gggcatcacc ggcattctgc acaaaaatcg gcagattttt cggcacacgt tgttgtgcta
     5761 catcgtccca gtgagcgtgg tgagtgtgag ttacgatcac cgcatccacg ccatttaaca
     5821 cttcatcaat gctcacagtc atatccaagg tcggattacg ttttttcgca ttcggcggta
     5881 agtagcgatc tttctccgct aaatacggat caaccaaaaa cgtcttgccg gcatattcaa
     5941 ttttcgccgt tgcattacga atatgttggt attggctctg ctcagcggca aaacttgatg
     6001 tagcgaaaag tgccgttgca atcaggctca gtgctgtttt tttgacaaaa gtcataggtt
     6061 ctccaaaata aattaaaatg cagagtatga ttttttacgc tctgcaatgc tggtttgcat
     6121 aaggaacagt gtcccttaca tcaataaaag cggtcgattt tgcacatttt tctgcaaaac
     6181 caaccgcttg ttcggctagg ctaatttctc taccttcgcc ggaatgccat ttctcaccgc
     6241 tgagccacag acccaatcta cccacgggga tttgaccgct ttggtgtggt cgataatgcc
     6301 gaggtcgttg aggttaatcc ctttggcgat catcgggttg gctggaattt ccacgccgtc
     6361 aatggtgtag gaacttgccc caatctgttt atgaccgtag ccgtgttcga tgccgattgt
     6421 gcctcgggcg ataccgtcca acaccacaat ctgcaccgtc aagccggcgg ttggggtgct
     6481 gagtttcacc acatcgccgt gtttaatgcc tttttcttcc gcatctaaac ggttcatcgc
     6541 cactaagccc tcaggcttga tcgagagcag acgcaacagt ggggcggtaa tactgctcat
     6601 aatgttcgat ttaaacgaaa tcagtttaaa gccccattcc gactgcggat agtgctgctc
     6661 cagcgtggag ccgtccgcaa aacgtggcga catataacga gggcagcccc aatagtgttc
     6721 accgttgctg tggtgctggg ctttatacac gttttcgttc caaatttgca ggcagttttt
     6781 ccactggaac tccatattct cctctttcca cgcactttcg tgtggggcaa aacgtccgcc
     6841 tttgcaatac acattcgcca cttttaatcg ctcttcggct tttagcgttt gttcaatttt
     6901 cggcataatc cgttgcacgc cggtgagcag cagatcttgc tcgctggcgt ccggtgcagg
     6961 tttctcaccg gcaaaggcaa tgttcgctgc cgcccgtagg aagtaatctt cggtacggtg
     7021 gagcggatag cggttgcctt ctaaatcggc aatcgcattt tcgccaaagc ccggcaagcc
     7081 catttttttc gccaccgcaa tcacgaaatt ctccatacag atggtgtcgc cttcggcagt
     7141 tttggcgttt ttggacggca caatcgggtg gcgtgcggtg ctggtgcgtt gaggcacacc
     7201 gccccacgcc gttgaaaagc cccagctctc aaagttgtgg gtgtccggca cgatgtagtc
     7261 cgtcagtgca gtggtttcgt tcataaaagc atcaatagag acaaagagcg gtagaatttt
     7321 cggatctttt aatttctcca acgcaatcgg gttcatagcg gttaagccgt aaacggggtt
     7381 cgccatatgg ttgatccacg ctttcgcaaa gtatggatag ccctgcacca ttgaggtaaa
     7441 catctcggta gtttgcccgc cggtgaacgg ataccacgcc ccttgtgccg gatacggatt
     7501 ttcgcccttc gtcactttct gcttaaattc gcttgaattt tggtacgcct ttttactgcg
     7561 ggcaaggttc gtgccttttg gcttcacttc attcgggaag ttcgctaaat tgtagcgagg
     7621 cccgtccccg aaatctttga atttgcctgc ggctactgcc attccgcctt ttttgttgag
     7681 gttaccgacc attgcattca gcaacaaaat cgcccaactg gtataaaaac cggtgctgtg
     7741 catcgtgccg ccgtgagtga tggcattggc tttatgaccg tgcgaagtga attttttcgc
     7801 taagttttca atggtttgca ccggcacgcc acaaatgtcg ctatattcgg caagggtttt
     7861 ctcttgtgtc gcctctttca gcaactgcat tgaggatttc accaacactt ccgagccatc
     7921 aagcagtttt gcaatttgtt cgacaaaaat gaccgcttgt aagcaatctt ttgctgaaat
     7981 gagttcgccg cttgcctgat cttttaccac aatcaggttt tcttccactt tctcttcggg
     8041 gtcgagttgc acatcttgca gatcgctaat ccgcaacgcc tgcccgaatt tcgggtggtt
     8101 cggttcgcaa ataatcagat gtgacgcatt ggcatagctg acgtggccgg cattttccat
     8161 cgctgccaga cttgggcggg agaggtagtc agcattgaaa cgctcgtttt cgataatcca
     8221 acgcaacatt cccattacca acgccaaatc gccctcgggc ttaatcggca cccaatggtt
     8281 gttttgggtg gcgagggagg aggtcatctc caaacgaggg gaaaccacca catagctgaa
     8341 attgtcatca gggcggcgtt tggcaagctg gcgagcctga cgcttaaacg gattgcccga
     8401 ctgtgccgga gacgtgccga taaacagaat aaattcagcg tgatcccagt ccggcttggc
     8461 gtgttgttgg ttgtcaaaat ctttcataaa ggcacccgaa ccggcacggt acgcagcgcc
     8521 acaataagcc ccgtggttgg aaaagttgat cgtgccgaag ctcttttggg caaagcgttg
     8581 caaaatcggc tgacgacctt cggggccggc aaaagtaact aaaagctggt ttgctttcat
     8641 tcccaaatca ggctgtttcg ggttaatcgg atcgaccaga ttgcggatcg tcttcaagcc
     8701 ctccacttcg ccttcaccaa ataggttgcc accattgatg atttcctcca ccaactgctc
     8761 aaagctgatg gtctgccact tgccttcgcc ccgttttccg acccgtttca acggttgggt
     8821 aatccgatac gggctgttca ccccctccaa gaacgccgcc cctctagcac aggcggtgga
     8881 gcgattttca atgcc
//
